<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:47:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716068" ref_strand="+" ref_description="SGN-E716068 [FB16AB07]">
      <seq>aaaaggagaaacagagaagaaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagtacagacaactcgtaactcaagcaatcagtcttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaaggtgcattgggattgttggtcatcacatcaaaagattagtggacaatggcttccttcagtatgactggcacaaaattagagagaaactatgtatctgccattttcaagaatcatgactcatttttggactaatagaatcctctttctagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7947" stop="2046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7647" g_stop="7531" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="230" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="302" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="338" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="384" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="472" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2626" i_stop="2497" i_length="130">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2496" g_stop="2346" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="681" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E716068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7647" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2496" e_stop="2346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGACA</genome_strand>
        <mrna_strand>AAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG..................................................................................................................................GTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344363" ref_strand="+" ref_description="SGN-E344363 [cTOF-16-F24]">
      <seq>gtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaagtatatattgataggtgcattgggattgttggtcatcacatcaaaagattagtggacaatggcttccttcagtatgactggcacaaaattagagagaaactatgtatctgccattttcaagaatcatgactcatttttggactaatagaatcctctttctagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5879" stop="2038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5579" g_stop="5538" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="114" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="150" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="196" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="284" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="342" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2509" g_stop="2347" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="505" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="522"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E344363" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5579" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGAC</genome_strand>
        <mrna_strand>GTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG.....................................................................................................................TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344009" ref_strand="-" ref_description="SGN-E344009 [cTOF-12-O6]">
      <seq>aaggggtactttttttttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttttatatgctcaaggtcaactttggctgcaacgtcatcacatcatggggaaagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaagtatatattgataggtgcattgggattgttggtcatcccatcaaaagattagtggacaatggcttccttcagtatgactggcccaaaattaaaaagaaactatgtatttgccattttcaagaatcatgactcatttttggactaatagaatcctctttttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5271" stop="2038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4973" g_stop="4899" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="109" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="155" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="243" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="301" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2509" g_stop="2347" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="464" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="504"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E344009" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344009" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4973" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGAC</genome_strand>
        <mrna_strand>AAGGGGTAC-TTTTTTT-TTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTTTATATGCTCAAGGTCAACTTTGGCTGCAACGTCATCACATCATGGGGAAAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG.....................................................................................................................TATATATTGATAGGTGCATTGGGATTGTTGGTCATCCCATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCCCAAAATTAAAAAGAAACTATGTATTTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339057" ref_strand="+" ref_description="SGN-E339057 [cTOF-6-B12]">
      <seq>aacagagaagaaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagtacagacaactcgtaactcaagcaatcagtcttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaagtatatattgataggtgcattgggattgttggtcatcacatcaaaagattagtggacaatggcttcctttagtatgactggcacaaaattagagagaaactatgtatctgccattttcaagaatcatgactcatttttggactaatagaatcctctttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7938" stop="2050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7638" g_stop="7531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="221" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="293" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="329" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="375" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="463" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="521" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2509" g_stop="2350" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="681" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E339057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7638" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTA</genome_strand>
        <mrna_strand>AACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG.....................................................................................................................TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTTAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356181" ref_strand="+" ref_description="SGN-E356181 [cTOS-20-K14]">
      <seq>gggtcaattcagtacagacaactcgtaactcaagcaatcagtcttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaagtatatattgataggtgcattgggattgttggtcatcacatcaaaagattagtggacaatggcttccttcagtatgactggcacaaaattagagagaaactatgtatctgccatttttcagaatcatgactcattttttgactaatagaatcctctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7874" stop="2051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7576" g_stop="7531" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="159" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="231" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="267" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="313" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="401" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="459" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2509" g_stop="2351" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="618" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E356181" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7576" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCT</genome_strand>
        <mrna_strand>GGGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG.....................................................................................................................TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTTCAGAATCATGACTCATTTTTTGACTAATAGAATCCTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719412" ref_strand="+" ref_description="SGN-E719412 [FC07DB07]">
      <seq>aattcgataaagtcaattcagtacagacaactcgtaactcaagcacccagacttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcaccgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgaccgaaaaaccaattatcaagtatatattgataggtgcattgggattgttggtcatcacatcaaaagattagtggacaatggcttccttcagtatgactggcacaaaattagagagaaactatgtatctgccattttcaaaaatcatgactcatttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7884" stop="2069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7585" g_stop="7531" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.94"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="168" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="240" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="276" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="322" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="410" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="468" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2509" g_stop="2369" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="609" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E719412" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7585" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGAC</genome_strand>
        <mrna_strand>AATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCACCCAGACTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCACCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG.....................................................................................................................TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAAAATCATGACTCATTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321439" ref_strand="+" ref_description="SGN-E321439 [cTOB-23-K6]">
      <seq>aaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagtacagacaactcgtaactcaagcaatctgtcttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaggaggggtgacattcttttcttgcatatgaggaaagaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcacagacactggagaagttaacgtccttacagaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgatgggttcttgccttatgttgggtgggtaacgataatcatgagccgaaaaccaattatccagaatatattgataggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7928" stop="2319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7628" g_stop="7531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="211" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="283" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="319" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="365" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="453" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2627" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="511" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2509" g_stop="2495" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="526" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E321439" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7628" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2627"/>
          <exon e_start="2509" e_stop="2495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAGGTTTGTTGTCTATTGAACTTCTAATTCTGCTTTTACATTAGTGCTTTATAAGGTTAACTATCTAGGTGATATGGAATTCAAATGCTAAGACTTTTTTTTCCTTTCTTCTTATTGCAGTATATATTGATAGGT</genome_strand>
        <mrna_strand>AAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCTGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGGAAAGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCACAGACACTGGAGAAGTTAACGTCCTTACAGAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGGTGGGTAACGATAATCATGAGCCGAAAACCAATTATCCAG.....................................................................................................................AATATATTGATAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471229" ref_strand="+" ref_description="SGN-E471229 [cSTB-23-A16]">
      <seq>ggagaaacagagagacgccaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagttcagacaactcgtaactcaagcaatcagtcttgggatgattgttacatcagcacttataatatggaaagcgttgatgtgtgtaactggcagtgagtcacctgtggtggttgtgctttccggaagtatggaacctggctttaaaaggggtgacattcttttcttgcatatgagcaaggatcctattcgtgcgggagaaattgttgtgtttaatgttgacggacgtgaaattccaattgttcatcgagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgttggttgggtaacgataatcatgactgaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7932" stop="2338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7632" g_stop="7531" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="215" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="287" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="323" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="369" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="457" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2638" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E471229" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7632" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAACAGAGAGACG-CAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAAC</genome_strand>
        <mrna_strand>GGAGAAA-CAGAGAGACGCCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTTCAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACATCAGCACTTATAATATGGAAAGCGTTGATGTGTGTAACTGGCAGTGAGTCACCTGTGGTGGTTGTGCTTTCCGGAAGTATGGAACCTGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGATCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAC..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATCGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACTGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437403" ref_strand="+" ref_description="SGN-E437403 [cSTA-3-L21]">
      <seq>cataccaaaaggagaaacagtgaagaaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagttcagacaactcgtaactcaagcaatcagtcttgggatgattgttacatcagcacttataatatggaaagcgttgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctccggaagtatggaacctggctttaaaaggggtgacattcttttcttgcatatgagtaaggatcctattcgtgcgggagaaattgttgtatttaatgttaatggacgtgaaattccaattgttcatcgagtaataaaggttcacgagcgcaaagacaccggagaagttaacgtccttacaaaaggagacaacaacttagaagatgacagacttctatatgctaaaggtcaactctggctgcaacgtcatcacatcatggggagagctgttgggttcttgccttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7953" stop="2369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7653" g_stop="7531" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="236" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="308" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="344" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="390" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3365" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="478" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2684" g_stop="2669" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="494" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E437403" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7653" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3365"/>
          <exon e_start="2684" e_stop="2669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCAAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGGGTGAGTTGACAGTTAGATCTGCTCTTTAGATCTTTGCTTTCTCGTTTCTTGAGGTCCTCTGCTTAAGAGACCCATCAGCAATTGTTAGGTTGTGAGGTCTTACAGTGGTGTTGCCTTGGCTCTCATTCCCTTCTATGCTTTATCTTATTTGAATATGCACCACTTCCTTTCGATTCTACTCTATGCAATATTGCAAACTCCAACAACTAATCCATTATAAATATGCAGAATTCATATTGTTAATCATTTTCCATTGGAAGATCCTCCACGTAAAGTAAAATTTTCACAGAAGTTGTCATTTTTTATACCACTATTTCCATGCTAGGGAAGTTTCATGAATTTGTTGACACTCGAGAAAGAATTGAAGTTTTCACTCGTATCTCTCCTTTTTTTCATTCTTTTTATAGTACTACTTTTATTTTCAGTACTTCTTTTTCTTCAATATTTCCATCATAGCTTTCAAACCTGTTCTGGAAAACGTTTTGTCTTCAGGCGAGTGTCTATTGGAAACAACCTCTCTACCTCACAGAGGTAGGGGTAAGGTCTGGTCTACGTACGCCCAACCCTCCCCAGACCCCACTTGTGCGAGTATATTCAGAATATGTTAATTGTATTCAGCCCCCCTTTGTGTGTTACCTATTTGTTCCTTGAATGCTGAACGACTTGCTTGTTAATTTCAGGTTCTTGCCTTATGTT</genome_strand>
        <mrna_strand>CATACCAAAAGGAGAAACAGTGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTTCAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACATCAGCACTTATAATATGGAAAGCGTTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCCGGAAGTATGGAACCTGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGTAAGGATCCTATTCGTGCGGGAGAAATTGTTGTATTTAATGTTAAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATCGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACCGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTAGAAGATGACAGACTTCTATATGCTAAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCCTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337914" ref_strand="+" ref_description="SGN-E337914 [cTOE-14-D14]">
      <seq>atttattgatttcagaccaaaaggagaaacagagaagaaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagtacagacaactcgtaactcaagcaatcagtcttgggatgattgttacgtcagcacttataatatggaaagcattgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctctctggaagtatggaaccaggctttaaaaggggtgacattcttttcttgcatatgagcaaggaccctattcgtgcgggagaaattgttgtgtttaatgttgatggacgtgaaattccaattgttcatagagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctcaaagtcaactctggctgcaacgtcatcacatcatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7965" stop="3076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7665" g_stop="7531" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="248" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="320" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="356" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="402" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3376" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="479" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E337914" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7665" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGG</genome_strand>
        <mrna_strand>ATTTATTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAAGTCAACTCTGGCTGCAACGTCATCACATCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475731" ref_strand="+" ref_description="SGN-E475731 [cSTB-41-H9]">
      <seq>cttgatttcagaccaaaaggagaaacagagaagaaaaacagagagacgcaaaaatgggatggatcggagagcaaatcgattcgataaagtcaattcagttcagacaactcgtaactcaagcaatcagtcttgggatgattgttacatcagcacttataatatggaaagcgttgatgtgtgtaactggcagcgagtcacctgtggtggttgtgctttccggaagtatggaacctggctttaaaaggggtgacattcttttcttgcatatgagtaaggatcctattcgtgcgggagaaattgttgtgtttaatgttgacggacgtgaaattccaattgttcatcgagtaataaaggttcacgagcgcaaagacactggagaagttaacgtccttacaaaaggagacaacaactttggtgatgacagacttctatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7960" stop="3114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7661" g_stop="7531" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5650" g_stop="5538" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="245" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4970" g_stop="4899" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="317" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4512" g_stop="4477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="353" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3832" g_stop="3787" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="399" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3452" g_stop="3414" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="438" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E475731" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7661" e_stop="7531"/>
          <exon e_start="5650" e_stop="5538"/>
          <exon e_start="4970" e_stop="4899"/>
          <exon e_start="4512" e_stop="4477"/>
          <exon e_start="3832" e_stop="3787"/>
          <exon e_start="3452" e_stop="3414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAA-CAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTGGTTTGTGTTCATCTTTTGTCCTTTTGATTTAGTTCAATTCATTGAGCTTGTGTATATATATATGGATGGTTTGATTTTTTATTTTTTGATATAGTTCTGTGTGATTTTGGATTTATCAATTGATTAATTAATTGTGCTGCTGTGTGTGTTGTGACCCATATGGGTTGACTCATTTTGATGGATTCAGTATTCAGAATGAATTGACTGGTTTTTTGCTGGATGTTGAGTGATAGATTCTGGAAAACTTTCATTTTTTCATGGATTTGGGGTTTTTGATGATTTTTTTGGGTTTTGGACTTATCAATTGATGGACGCATTTGGGTTGACCCGTTTTGATGGATTCAGTATTTAGAATGAATTGACTGTTTTTTTTGCTGGTTGTTAACTTCTGGAAAAACTTCGTTTTGTGAGGATTTGGATTTTTTTTTTTTATGAATTTGTTGGGATTTCAGACTAGAGGCTGAGATTTTCTGGAAAAAAATTCTCTCTTTAGGTGTTTGGTGGAGTATATAGATTAGGTTCCTATCTGTTTCATGGTAAAAAGGCACAGCCTGGTTTGTTGCATTTACGCAGGGTTGGGGGAAAGGTCGCACCCCTAAAGGGTGTGTTGTAGGCAGCTTACCTAGGTGCAAACATCAATAGCGGTTTCATGGTGTATTTTAAATTTTTAGTGTTTTGCTTTTAGTACCAAAGAAACCAAATTTAGATGTTTATTTATGATTATTGAGCTAAGTTCAAGGCCAATGACCAAATCCAGTTGGTTTTTAAGCTTGTTTGAGACATCCCATGGAAGTTTTGAAGTAGCTTCTTGTTAGGTGGCATTCATGTGGTTGCTAACTGTGTCTTGAACGATTGCTTGTTTGGGTTGTGCAGTTTGCTCAGAAATAGGCTACAAGTAGTCCTGTACCTTATTCTTCTTTATCTAATTATTGAAATAATTTGAAATGAAGTGTCCAACTTTGTAGTCATTGTCTAGAGGTGAATTATAGAGCATGAAATAGCTGTGTTCCCTTATTCACTTATTATCTATAGGTTCACATATTTTATGTTATGAAGCTGAAAGATTTATACCCAAATCAAGATATCTGTTCTAGTCAATGTTAGCAAAAAGAGAGAACTGTTTTATGCATATTTGTAGTTTATTTTTGGGCATTAAAAATCAAGAAATATCTTAATTGTTAATGACATGGTTGAATTATATCTCCATGTAAGGATATTATGAAACTTAACATTGCCCATTGAGAAAAATTTATTATCTTAGAAAATCATCTTCTCAAATAATTAAATGTGCAATAATGCAACTATGGAACTAATGCAGATGCAAGCTGAAGCGAATGTCTATCCTCTTCTCAATGATTTAGTGTCTAGTTTTTGCTTTGTTGCGGATTATACGAGCTAGAAAATAGTTGGACTTCTAGATTGGTATAGAGGGAATATCTAGTTGGCATTGATTTGAAGAATTGAACTTGAAATTCAGTTTACAAACTTTACAAGAAGTGTTTGTTTTGGCTGCTTTTGCCAAGTGAAAGTTGACTACTTTGGGAAATAATTTCAGACTCAAATTTTCAAATATTTCAACTCAGAATTGACTTCTTGAATTTTTATTTTGAAGAATAGAGTCCGAGTCTTTGAACAATTTGAAAACCTTAGTTTTAAATTTGTTAGAGCACTTGTTTCTTTTTTTTTTTTTTGGCAAAATCAGTTCAACCCCACACTTCTTGAAAGAATTGATATTAGAACTGAGTTGTTCAATGTTAAATCTATTTTCATTTCTTCTGATGTGTGAAAAAGTATGAAAATGGAAGTTGATGGATTTTGTTCTTTACTCTGTAAAAGTTAATATTCTTTAGTCTGACCCTTCTTCACATAATCACTTTCAGGGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGGGTGAGCTAAAGAAACTTGTTCACAAGAAAAAAAAGAGGACTTGGGGATGGGAGAGGGCATCTAAACAAACGGATAACAGCCAACTGTAGCTGGACTTGTTTCTACTTCTTTTGCTGTGTGCTACTCTGTTTGTTTATCCTTTGCTAAAGATTCTTTACTAGAGGTTAAATACTAGAGGATATTAGGATATGAAACTAAAGAAAGGGAGTTCAAAAAAAGTTTTGTTTAACTATCTTGTTTTTCATCTAAATATGCATAATCTATGCTAGATATATCTTCTTGTATTTGGCTTATTGCTGAATAGATATCAGGGTTTCTGGTTTCAGTAGCAACTTGTTATTATTTGAAATAAATAATGAGCCTTCCTATTCTAATGTTGTGCAAAGTACGCCTTTCATGTGAGTGACAGTATGATCCTGGTGTCTTTCTTACTATCGAGGAGAAACTCTCCTGAATTCCTTTTCTTTTCGTTTACACTATAGTGAGAAGTAGAAATACTTCTTTAAGTGGAGTGTTAGTTGCTCTTTCGACTCTGTATTACTGAAAACATCGTCTACTTTCTTGCAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGATGTAAGTAGTGCTTACCAGCATCTTCTGTTTTACCTGTTTTCTGCTCGAGTTACTTTGGCTTTTGAGAAGATAAACATACACAATAAACAATATTTCTTTGTATTCTCTGCTTTTGCAATGTCACTTGTGGGAGTTATTTATGTTCCCATAGTAACAGCTTGGCACCTTTTCACATTTCTATTTCGTCTACAACAACAGGATTAGGCACATATTAGAATAAAAATTGTTTCATTGAATAGACCTTATTTAGTTTTGCTCATAAATACCAGTAATATCTATTTTATGATTGGACTTCAATCTGTCAAAATCATGTTCCTGAAATTATTGCTATCATTTATATTGACTTCAAAATTTACTAATGCTGATGGCATTTTTTTGTTGCACAGGGACGTGAAATTCCAATTGTTCATAGAGTAATAAAGGTATGTTGGGAAGTTTTCTCTCTGTACCAAATTTTCTTTCATCTGGTTGTGTTGCCTGCATCTAATGTTTCTGTGCACTGGTAGTAAAACAAGGAATGTGCAATTAATTATCAATATTTGTAAAGGAAAAGAAGGATATAAGGGATTGATAGATGAAAGCACATTCTGAAGTGATAAAGTGATAGAATGACCCTCTTTTAACTAGATTAGGGTATGCAACCAATCAGAGCGGGCTTGGTTTGAAGCCTGGCTGATGATTAGCCATTCCTCTCTTCCTTGATAATTGAGAGAAGTACATACATAAAAAGTAAATTCTGGAGTCATATACCAGTGATGAATCTAACCGAGAATAGACTGTAAATTTCACAAATATTATCAGCAACTTTCTGTATCATTTTCTGCACGTGGTAATTCAATTTGTAATACAACTTTGTTGTATTTACTTCCAAACTCAATCCAAGTACCAACCTTCTGAACGAAGAGGGAACAGAAATTAAAATATTGTTGAATAATGACATGATAAGAAGGCACGTGTTTCCTGTACTTAACTAATTTTGGTTGTATCTGACATTTGCTGTCTGCCCACTTTTTCCTTCCTCTTGGGTAAACTAACCACCATTACTTCTTTATGTTTCCCCTTGTAGGTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAGGTATTTGTTTATGATGCATATTAGGTTAGAAGTCAAGAATGTATTGTATAGATCCCTTCCGCGCTCTTTCTCTCCCTCTCTCTCTGCATTGAGAGTCGGTTATCATAAATTTATTACAATTCATAAGGTGCTCATCAATCATTTCATAGTTTTTTATTTAATGAAAAAGTTTTACTTCAGACAATAATCTTCTGCTTGTTTGTTTGTACTGATCAACTGAGAAAGCCTTCTGTTATTTGCTTGTCCCCTAATTATTGTTAAGCAAGGTTTTATGGTTCTTACTCCTCAATAATGACTACTAATTTTCTTTGCTGTATATGATTCAAATCTTTAGGAGACAACAACTTTGGTGATGACAGACTTCTATATGCTC</genome_strand>
        <mrna_strand>CTTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTTCAGACAACTCGTAACTCAAGCAATCAGTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTGTTACATCAGCACTTATAATATGGAAAGCGTTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTTTCCGGAAGTATGGAACCTGGCTTTAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACATTCTTTTCTTGCATATGAGTAAGGATCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAC..................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGAAATTCCAATTGTTCATCGAGTAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG..............................................................................................................................................................................................................................................................................................................................................GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369842" ref_strand="+" ref_description="SGN-E369842 [TUS-25-O9](-)">
      <seq>actgcctcatcaaatcaagcacttgttctgtttagaaagctgtatcccggacacagaaccaaggagattaacatattcattgataatgctgttaaatatcttgaagatgtacaaatgcctgatggttcatggtatggtaactggggtgtttgcttcacatatggttcctggtttgctcttgaagggcttgttgcagcaggcaagtcctacaacaactctgcagctgttcgtaaaggcgttgaatttctgctaagaacacaaagatccgatggtggttggggcgaaagctaccgttcttgcccagacaaggtatatagagaactcgaaacaaatgactcaaatcttgtacaaactgcatgggcattgatgggattgattcactctggacaggctgatagagatccgaaaccccttcaccgtgcagcaaagttgttgatcaattctcagatggaagatggtgacttcccacagcaggaaattactggagtttttatgaagaattgcatgttgcattatgcagcatacagaaatatatatccattatggggtttggctgaataccgcaaaaatgtattattaccattagaaaacaactaaatatatataatttttcgatatagagtgcaatttggtcctttttttttttggtgttaatgtgagtgatgtaacaaaagtaaaaattcatagcctaagttaattttattattttgtattacataatttgtgaataaagaaagttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11381" stop="8955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11081" g_stop="10951" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10950" i_stop="10870" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10869" g_stop="10692" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="309" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10691" i_stop="10243" i_length="449">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10242" g_stop="10078" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="474" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10077" i_stop="9525" i_length="553">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9524" g_stop="9255" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="744" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E369842" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11081" e_stop="10951"/>
          <exon e_start="10869" e_stop="10692"/>
          <exon e_start="10242" e_stop="10078"/>
          <exon e_start="9524" e_stop="9255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATGGTATATTATATTTCTTTTCCGAGTTCTTGAACTTACTACAAATAGCTCGATAACATATGACATGAGTAATCATGTTAACAGGTATGGTAACTGGGGTGTTTGCTTCACATATGGTTCCTGGTTTGCTCTTGGAGGGCTTGTTGCAGCAGGCAAGTCCTACAACAACTCTGCAGCTGTTCGTAAAGGCGTTGAATTTCTGCTAAGAACACAAAGATCCGATGGTGGTTGGGGCGAAAGCTACCGTTCTTGCCCAGACAAGGTAAAGTAAAAGTAAAGGTCCTTTCTCAGGACTTCTCTGTCAGCACGTTTGAGTTATCTGCATCTAAAGTCTGATGCATTGTTTTTAAATTCCACACCCCTTTCCCCGTTAAAGAATGACAATAACAACAACAATGTCTCGATCTTTACATAGTTAGGATCGGATATTTTAGGTAAGATACATCCTCTTCATTTCAAACCATTTCATTCCAATATGCAAGCTAACACTGAAGGTTCTCAATACGAAGATAGACACTTTAACTTGGCCTCAACTGGCAACTGAACACTCCTAATTTGAGTATGCACGCCACACCTCAACTCGACTCCACTATACTAGAGGAACATTCCAACTTAGAAAATGATCACGTAGACATCTACATTACGAATTTCTAGTTAGATGTGTACTGTCGAAAAGCCACTGTGACTGAGTTTTGTTTTTGATCAAAACAGGTATATAGAGAACTCGAAACAAATGACTCAAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGACAGGCTGATAGAGATCCGAAACCCCTTCACCGTGCAGCAAAGTTGTTGATCAATTCTCAGATGGAAGATGGTGACTTCCCACAGCAGGTAATCACTCTGTAAATTACAAGCCAAACGGATAGAAGATTCATATAGTTGATACAAACTAGTTAAAGACTGAGTTGTGTTTGATTGATACTGATTGTTAAAGCGAAAAAAGCTCTTTCAATTTACCAAAAAATATACGTAAGAAAATAGACATTACTCTCCTCGTCCTATTTTATGCGACACATTTTGACTGGACACGAGCTTAAGAAAGTAAGAAATACTTCTAAAACCTGTTCTCTAAGAAACAAAATTTGTGTTTCTTTTAATCATCTCATTAGTAACAAAAAACAATAGAAAATTTAAAGCTAAATCGTTTCTAAATATAGAAATGAATCATTCTTTTTGGAACAGACTGAAAAGGAAGCATGGAATATGAAGTCAGTTTTATCATTGTCTAATGTGATGTGTGAATTAGGCGTACGTCACAAAACTCTATTATAGACAAAATTGTACCCCATTGGCTCTCGAGAATTTCTCGATTATATATAAAAAAATAGTTTTATTATCAAAATTTTTTTATTATCTGATTTTTTTGTAATACATATATGTGCAGGAAATTACTGGAGTTTTTATGAAGAATTGCATGTTGCATTATGCAGCATACAGAAATATATATCCATTATGGGGTTTGGCTGAATACCGCAAAAATGTATTATTACCATTAGAAAACAACTAAATATATATAATTTTTCGATATAGAGTGCAATTTGGTCCTTTTTTTTTTTGGTGTTAATGTGAGTGATGTAACAAAAGTAAAAATTCATAGCCTAAGTTAATTTTATTATTTTGTATTACATAATTTGTGAATAAAGAAAGTTACATA</genome_strand>
        <mrna_strand>ACTGCCTCATCAAATCAAGCACTTGTTCTGTTTAGAAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATG.................................................................................GTATGGTAACTGGGGTGTTTGCTTCACATATGGTTCCTGGTTTGCTCTTGAAGGGCTTGTTGCAGCAGGCAAGTCCTACAACAACTCTGCAGCTGTTCGTAAAGGCGTTGAATTTCTGCTAAGAACACAAAGATCCGATGGTGGTTGGGGCGAAAGCTACCGTTCTTGCCCAGACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATAGAGAACTCGAAACAAATGACTCAAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGACAGGCTGATAGAGATCCGAAACCCCTTCACCGTGCAGCAAAGTTGTTGATCAATTCTCAGATGGAAGATGGTGACTTCCCACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACTGGAGTTTTTATGAAGAATTGCATGTTGCATTATGCAGCATACAGAAATATATATCCATTATGGGGTTTGGCTGAATACCGCAAAAATGTATTATTACCATTAGAAAACAACTAAATATATATAATTTTTCGATATAGAGTGCAATTTGGTCCTTTTTTTTTTTGGTGTTAATGTGAGTGATGTAACAAAAGTAAAAATTCATAGCCTAAGTTAATTTTATTATTTTGTATTACATAATTTGTGAATAAAGAAAGTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258633" ref_strand="+" ref_description="SGN-E258633 [cLEG-50-M11]">
      <seq>ccaagcactattggccagtgagatgaatgatgagatagcagatacgcttagaaaaggacatgactttataaaacaatctcaggtgacgaacaatccgtctggtgatttcaaaggaatgtatcgacatatctcaaaaggatcatggactttttcagatcaagatcatggatggcaagtctctgattgcactgctgaagcattaaagtgctgccttctgttgtctacaatgcctcgtgaattagtcggtcaggcaatggagccagggcgattgtatgactcggtgaatgttattctttcattacagagcaaaaatggcggtttagcagcatgggaacctgcaggagcctccgagtatttggagctgctgaatcctactgaatttttcgcggacattgtcattgagcacgagtacgtcgaatgcactgcctcatcaattcaagcacttgttctgtttaagaagctgtatcccggacacagaaccaaggagattaacatattcattgataatgctgttaaatatcttgaagatgtacaaatgcctgatggttcatggtatggtaactggggtgtttgcttcacatatggttcctggtttgctcttggaaggcttgttgcagcaggcaagtcctacaacaactctgcagctgttcgtaaaggcgttgaatttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12281" stop="10451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11981" g_stop="11900" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11899" i_stop="11819" i_length="81">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11818" g_stop="11696" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="205" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11695" i_stop="11600" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11599" g_stop="11501" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="304" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11500" i_stop="11376" i_length="125">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11375" g_stop="11319" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11318" i_stop="11226" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11225" g_stop="11179" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11178" i_stop="11095" i_length="84">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11094" g_stop="10951" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="552" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10950" i_stop="10870" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10869" g_stop="10751" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="671" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E258633" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11981" e_stop="11900"/>
          <exon e_start="11818" e_stop="11696"/>
          <exon e_start="11599" e_stop="11501"/>
          <exon e_start="11375" e_stop="11319"/>
          <exon e_start="11225" e_stop="11179"/>
          <exon e_start="11094" e_stop="10951"/>
          <exon e_start="10869" e_stop="10751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAGGTTTGGATATTTAATTATTAAGAACTTTGTTCTAATGTTTTCGTTTCAACTAAGTCTTACAGTGTGAGAGTCTTCTCGTAGGTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAGGTATCTCAAAGTTCAATTTCTTGAAATTTGCTGACAAATGGTAAGATGATGGCTAGAAAGTTTGCCTAATTTTTCGTTTAACTTTTGTTTGTCTAGTGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAGGTAAACACTGAAAGATGTGCCCTCAAATCATTAATCACTGAAGTTGTTTTCTGCTTTTGCAAAAAAATTCAAGAGAAACCTATATCTTGAAGTTATAATAAGATCCATTTTAAATATAATCGCAGAGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAGGTAACACAATATTCCTATTTCCATGATTTGTCTCAACGTTGTTAAAAACCTTCAACCATTTTAACTTTCTTGTTCTGTTTTATTCACTGACAGCTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGAGTATGATCACTATAGTTCCTCTCTCTTTCCCTTTTCTTGTTAGTCTCCGTTTTACAGCTTGACACTGATTAAATGTCAATCCAGGTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATGGTATATTATATTTCTTTTCCGAGTTCTTGAACTTACTACAAATAGCTCGATAACATATGACATGAGTAATCATGTTAACAGGTATGGTAACTGGGGTGTTTGCTTCACATATGGTTCCTGGTTTGCTCTTGGAGGGCTTGTTGCAGCAGGCAAGTCCTACAACAACTCTGCAGCTGTTCGTAAAGGCGTTGAATTTCTGC</genome_strand>
        <mrna_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAG.................................................................................GTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAG................................................................................................TGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAG.............................................................................................................................AGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAG.............................................................................................CTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGA....................................................................................GTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATG.................................................................................GTATGGTAACTGGGGTGTTTGCTTCACATATGGTTCCTGGTTTGCTCTTGGAAGGCTTGTTGCAGCAGGCAAGTCCTACAACAACTCTGCAGCTGTTCGTAAAGGCGTTGAATTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255409" ref_strand="+" ref_description="SGN-E255409 [cLEG-30-F14]">
      <seq>ccaagcactattggccagtgagatgaatgatgagatagcagatacgcttagaaaaggacatgactttataaaacaatctcaggtgacgaacaatccgtctggtgatttcaaaggaatgtatcgacatatctcaaaaggatcatggactttttcagatcaagatcatggatggcaagtctctgattgcactgctgaagcattaaagtgctgccttctgttgtctacaatgcctcgtgaattagtcggtcaggcaatggagccagggcgattgtatgactcggtgaatgttattctttcattacagagcaaaaatggcggtttagcagcatgggaacctgcaggagcctccgagtatttggagctgctgaatcctactgaatttttcgcggacattgtcattgagcacgagtacgtcgaatgcactgcctcatcaattcaagcacttgttctgtttaagaagctgtatcccggacacagaaccaaggagattaacatattcattgataatgctgttaaatatcttgaagatgtacaaatgcctgatggttcatggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12281" stop="10647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11981" g_stop="11900" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11899" i_stop="11819" i_length="81">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11818" g_stop="11696" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="205" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11695" i_stop="11600" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11599" g_stop="11501" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="304" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11500" i_stop="11376" i_length="125">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11375" g_stop="11319" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11318" i_stop="11226" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11225" g_stop="11179" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11178" i_stop="11095" i_length="84">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11094" g_stop="10951" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="552" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E255409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11981" e_stop="11900"/>
          <exon e_start="11818" e_stop="11696"/>
          <exon e_start="11599" e_stop="11501"/>
          <exon e_start="11375" e_stop="11319"/>
          <exon e_start="11225" e_stop="11179"/>
          <exon e_start="11094" e_stop="10951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAGGTTTGGATATTTAATTATTAAGAACTTTGTTCTAATGTTTTCGTTTCAACTAAGTCTTACAGTGTGAGAGTCTTCTCGTAGGTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAGGTATCTCAAAGTTCAATTTCTTGAAATTTGCTGACAAATGGTAAGATGATGGCTAGAAAGTTTGCCTAATTTTTCGTTTAACTTTTGTTTGTCTAGTGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAGGTAAACACTGAAAGATGTGCCCTCAAATCATTAATCACTGAAGTTGTTTTCTGCTTTTGCAAAAAAATTCAAGAGAAACCTATATCTTGAAGTTATAATAAGATCCATTTTAAATATAATCGCAGAGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAGGTAACACAATATTCCTATTTCCATGATTTGTCTCAACGTTGTTAAAAACCTTCAACCATTTTAACTTTCTTGTTCTGTTTTATTCACTGACAGCTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGAGTATGATCACTATAGTTCCTCTCTCTTTCCCTTTTCTTGTTAGTCTCCGTTTTACAGCTTGACACTGATTAAATGTCAATCCAGGTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATG</genome_strand>
        <mrna_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAG.................................................................................GTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAG................................................................................................TGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAG.............................................................................................................................AGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAG.............................................................................................CTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGA....................................................................................GTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369843" ref_strand="+" ref_description="SGN-E369843 [TUS-25-O9]">
      <seq>ccaagcactattggccagtgagatgaatgatgagatagcagatacgcttagaaaaggacatgactttataaaacaatctcaggtgacgaacaatccgtctggtgatttcaaaggaatgtatcgacatatctcaaaaggatcatggactttttcagatcaagatcatggatggcaagtctctgattgcactgctgaagcattaaagtgctgccttctgttgtctacaatgcctcgtgaattagtcggtcaggcaatggagccagggcgattgtatgactcggtgaatgttattctttcattacagagcaaaaatggcggtttagcagcatgggaacctgcaggagcctccgagtatttggagctgctgaatcctactgaatttttcgcggacattgtcattgagcacgagtacgtcgaatgcactgcctcatcaattcaagcacttgttctgtttaagaagctgtatcccggacacagaaccaaggagattaacatattcattgataatgctggtaaatatcttgaagatgtacaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12281" stop="10663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11981" g_stop="11900" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11899" i_stop="11819" i_length="81">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11818" g_stop="11696" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="205" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11695" i_stop="11600" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11599" g_stop="11501" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="304" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11500" i_stop="11376" i_length="125">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11375" g_stop="11319" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11318" i_stop="11226" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11225" g_stop="11179" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11178" i_stop="11095" i_length="84">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11094" g_stop="10963" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="540" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E369843" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11981" e_stop="11900"/>
          <exon e_start="11818" e_stop="11696"/>
          <exon e_start="11599" e_stop="11501"/>
          <exon e_start="11375" e_stop="11319"/>
          <exon e_start="11225" e_stop="11179"/>
          <exon e_start="11094" e_stop="10963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAGGTTTGGATATTTAATTATTAAGAACTTTGTTCTAATGTTTTCGTTTCAACTAAGTCTTACAGTGTGAGAGTCTTCTCGTAGGTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAGGTATCTCAAAGTTCAATTTCTTGAAATTTGCTGACAAATGGTAAGATGATGGCTAGAAAGTTTGCCTAATTTTTCGTTTAACTTTTGTTTGTCTAGTGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAGGTAAACACTGAAAGATGTGCCCTCAAATCATTAATCACTGAAGTTGTTTTCTGCTTTTGCAAAAAAATTCAAGAGAAACCTATATCTTGAAGTTATAATAAGATCCATTTTAAATATAATCGCAGAGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAGGTAACACAATATTCCTATTTCCATGATTTGTCTCAACGTTGTTAAAAACCTTCAACCATTTTAACTTTCTTGTTCTGTTTTATTCACTGACAGCTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGAGTATGATCACTATAGTTCCTCTCTCTTTCCCTTTTCTTGTTAGTCTCCGTTTTACAGCTTGACACTGATTAAATGTCAATCCAGGTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCC</genome_strand>
        <mrna_strand>CCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAG.................................................................................GTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAG................................................................................................TGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAG.............................................................................................................................AGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAG.............................................................................................CTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGA....................................................................................GTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGGTAAATATCTTGAAGATGTACAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703298" ref_strand="+" ref_description="SGN-E703298 [FA21AE03]">
      <seq>aggcacctctcattttgcaactaagggaagagttatatgatcgaccatacgatgaaattaactggaagaaagtgcgccatgtatgtgcaaaggaggatctttattaccctcatccattggttcaagatttgatgtgggatagtctctacatatgtaccgagcctttgttgacccgttggcctttcaacaagctgagaaacaaagctcttgaagttaccatgaaacacatacactatgaagacgagaatagtcgatacatcaccatcggatgtgtcgaaaaagtattgtgcatgcttgcttgttgggtcgaggatcctaacggcgattatttcaaaaaacatcttgctaggatccctgattatttatgggtagctgaagatggaatgaaaatgcagagtttcggtagtcaagaatgggatactggttttgctatccaagcactattggccagtgagatgaatgatgagatagcagatacgcttagaaaaggacatgactttattaaacaatctcaggtgacgaacaatccgtctggtgatttcaaaggaatgtatcgacatatctcaaaaggatcatggactttttcagatcaagatcatggatggcaagtctctgattgcactgctgaagcattaaagtgctgccttctgttgtctacaatgcctcgtgaattagtcggtcaggcaatggagccagggcgattgtatgactcggtgaatgttattctttcattacagagcaaaaatggcggtttagcagcatgggaacctgcaggagcctccgagtatttggagctgctgaatcctactgaatttttcgcggacattgtcattgagcacgagtacgtcgaatgcactgcctcatcaattcaagcacttgttctgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13063" stop="10748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12766" g_stop="12675" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12674" i_stop="12517" i_length="158">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12516" g_stop="12328" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="281" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12327" i_stop="12230" i_length="98">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12229" g_stop="12116" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="395" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12115" i_stop="12020" i_length="96">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.392" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12019" g_stop="11900" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11899" i_stop="11819" i_length="81">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11818" g_stop="11696" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="638" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11695" i_stop="11600" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11599" g_stop="11501" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="737" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11500" i_stop="11376" i_length="125">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11375" g_stop="11319" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="794" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11318" i_stop="11226" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11225" g_stop="11179" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="841" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11178" i_stop="11095" i_length="84">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11094" g_stop="11048" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="888" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E703298" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12766" e_stop="12675"/>
          <exon e_start="12516" e_stop="12328"/>
          <exon e_start="12229" e_stop="12116"/>
          <exon e_start="12019" e_stop="11900"/>
          <exon e_start="11818" e_stop="11696"/>
          <exon e_start="11599" e_stop="11501"/>
          <exon e_start="11375" e_stop="11319"/>
          <exon e_start="11225" e_stop="11179"/>
          <exon e_start="11094" e_stop="11048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGCCTCTCATTTTGCAACTAAGGGAAGAGTTATATGATCGACCATACGATGAAATTAACTGGAAGAAAGTGCGCCATGTATGTGCAAAGGTATGATTATCAAAGGTCGTTTGATTACCGACATAAAGTTTGGTAGTATTTATCCCTGTATAGCTTTGTTTACGAACCAAACGAGTCCTCAGTTTTGAAGTTAGTATCTACATTATACCATCTTCTACGAATGCTCAAACACAAACTTGTTGCTGCAGGAGGATCTTTATTACCCTCATCCGTTGGTTCAAGATTTGATGTGGGATAGTCTCTACATATGTACCGAGCCTTTGTTGACCCGTTGGCCTTTCAACAAGCTGAGAAACAAAGCTCTTGAAGTTACCATGAAACACATACACTATGAAGACGAGAATAGTCGATACATCACCATCGGATGTGTCGAAAAAGTATGGCAACTTAATCATTTTGAACAGATTACAGAATTACCTGCATTTTGTTAATGACTTCTTTTGTTAGACACTGATGAAACACTTGGATGGTGTAGGTATTGTGCATGCTTGCTTGTTGGGTCGAGGATCCTAACGGCGATTATTTCAAAAAACATCTTGCTAGGATCTCTGATTATTTATGGGTAGCTGAAGATGGAATGAAAATGCAGGTCTGTAAATCTGAATTGTACTATTTGACAAACCAGAATAAGCAAGAATAGGATATGTTGTTACTGAATAGGCGACAATTTGTCGTTGAATTTCAGAGTTTCGGTAGTCAAGAATGGGATACTGGTTTTGCTATCCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAGGTTTGGATATTTAATTATTAAGAACTTTGTTCTAATGTTTTCGTTTCAACTAAGTCTTACAGTGTGAGAGTCTTCTCGTAGGTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAGGTATCTCAAAGTTCAATTTCTTGAAATTTGCTGACAAATGGTAAGATGATGGCTAGAAAGTTTGCCTAATTTTTCGTTTAACTTTTGTTTGTCTAGTGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAGGTAAACACTGAAAGATGTGCCCTCAAATCATTAATCACTGAAGTTGTTTTCTGCTTTTGCAAAAAAATTCAAGAGAAACCTATATCTTGAAGTTATAATAAGATCCATTTTAAATATAATCGCAGAGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAGGTAACACAATATTCCTATTTCCATGATTTGTCTCAACGTTGTTAAAAACCTTCAACCATTTTAACTTTCTTGTTCTGTTTTATTCACTGACAGCTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGAGTATGATCACTATAGTTCCTCTCTCTTTCCCTTTTCTTGTTAGTCTCCGTTTTACAGCTTGACACTGATTAAATGTCAATCCAGGTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTA</genome_strand>
        <mrna_strand>AGGCACCTCTCATTTTGCAACTAAGGGAAGAGTTATATGATCGACCATACGATGAAATTAACTGGAAGAAAGTGCGCCATGTATGTGCAAAG..............................................................................................................................................................GAGGATCTTTATTACCCTCATCCATTGGTTCAAGATTTGATGTGGGATAGTCTCTACATATGTACCGAGCCTTTGTTGACCCGTTGGCCTTTCAACAAGCTGAGAAACAAAGCTCTTGAAGTTACCATGAAACACATACACTATGAAGACGAGAATAGTCGATACATCACCATCGGATGTGTCGAAAAA..................................................................................................GTATTGTGCATGCTTGCTTGTTGGGTCGAGGATCCTAACGGCGATTATTTCAAAAAACATCTTGCTAGGATCCCTGATTATTTATGGGTAGCTGAAGATGGAATGAAAATGCAG................................................................................................AGTTTCGGTAGTCAAGAATGGGATACTGGTTTTGCTATCCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATTAAACAATCTCAG.................................................................................GTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAG................................................................................................TGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAG.............................................................................................................................AGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAG.............................................................................................CTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGA....................................................................................GTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469008" ref_strand="+" ref_description="SGN-E469008 [cSTB-10-K5]">
      <seq>gttcaattgatacgaaggcgatgagttgaggttatgtgtatgtatatcactgggcatcttaacactgtattcccagctgaacatcgaaaggaaattcttcggtatatatactgtcatcagaacgaagatggtggatggggtttgcacatagaaggtcacagtactatgttctgtacagctctgagttacatttgcatgaggatccttggagaaggaccagatggcggtgtaaataatgcgtgtgctagagcaaggaaatggattcttgatcatggtagtgtcactgcaattccttcttggggaaaaacatggctctcgattcttggagtttttgaatggataggaaccaatccaatgccacctgagttctggattcttccatcttttcttcccgtgcatccagcaaaaatgtggtgttactgtcgaatggtctacatgccgatgtcttacctctatgggaagagatttgttggtccaatcacgcctctcattttgcaactgagggaagagttatatgatcaaccatacaatgaaattaactggaagaaagtgcgccatgtatgtgcaaaggaggatctctattaccctcatccattggttcaagatttgatgtgggacagtctctacatatgtaccgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="14079" stop="12146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13769" g_stop="13680" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="120" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13679" i_stop="13492" i_length="188">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13491" g_stop="13294" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="318" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13293" i_stop="13006" i_length="288">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13005" g_stop="12921" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="403" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12920" i_stop="12842" i_length="79">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12841" g_stop="12675" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="570" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12674" i_stop="12517" i_length="158">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12516" g_stop="12446" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="641" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469008" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13769" e_stop="13680"/>
          <exon e_start="13491" e_stop="13294"/>
          <exon e_start="13005" e_stop="12921"/>
          <exon e_start="12841" e_stop="12675"/>
          <exon e_start="12516" e_stop="12446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGTGTATGTATATCACTGGGCATCTTAATACTGTATTCCCAGCTGAGCATCGAAAGGAAATTCTTCGGTATATATACTGTCATCAGGTATACGACGTAATGTCACAATGAGTATACTGATACCTAAAGAATTTAACTTATATACAATGACGATGTGCATGAGTTAACTTTTTTAGCATCTTAATGTTTACAAATTTAAGATTAGTATAGATAGTGTACGATGTCACGAGTGTATAGAACTTAAACTCGTTTCTGAATTGCTGACGTTGTTTCAGAACGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTCTGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGATGGCGGTGTAAATAATGCGTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCACCGCAATTCCTTCGTGGGGAAAAACATGGCTCTCGGTATGACTATGATTTAACTTATATACAATGATTACGTACAAAGTCTATAACAGATAGAGGATGGTTACGTATTTCACGTTAAACTAAGTGAATTATATCATTTCCCCTTGTCAAGTAATTTTCTATTGACATGTATCTTTGTTCAAACTCTTCAAAAATGTGGTCGTATGTGTGTTGGATCCTTCAAAAGTAGTGCAGTTGAAGGATCTGGCATGGACGCGGCAACATTTTTGGAGGGTCGAGCAACGTTGTCTTCTTGTGCTGAGAAATTTCCGCTCTTTCAATCAGATTCTTGGAGTTTTTGAATGGATAGGAACCAATCCAATGCCACCTGAGTTTTGGATTCTTCCATCTTTTCTTCCCGTGCATCCAGGTTGGTTAATATTATTTTCAGGATTTTCTATGCAGCATTGCGATCTGCCTCGTATTTTGACACTTCAACTTAAATGCAGCAAAAATGTGGTGTTACTGTCGAATGGTCTACATGCCGATGTCTTACCTCTATGGGAAGAGATTCGTTGGTCCAATCACGCCTCTCATTTTGCAACTAAGGGAAGAGTTATATGATCGACCATACGATGAAATTAACTGGAAGAAAGTGCGCCATGTATGTGCAAAGGTATGATTATCAAAGGTCGTTTGATTACCGACATAAAGTTTGGTAGTATTTATCCCTGTATAGCTTTGTTTACGAACCAAACGAGTCCTCAGTTTTGAAGTTAGTATCTACATTATACCATCTTCTACGAATGCTCAAACACAAACTTGTTGCTGCAGGAGGATCTTTATTACCCTCATCCGTTGGTTCAAGATTTGATGTGGGATAGTCTCTACATATGTACCGAGCC</genome_strand>
        <mrna_strand>GTTATGTGTATGTATATCACTGGGCATCTTAACACTGTATTCCCAGCTGAACATCGAAAGGAAATTCTTCGGTATATATACTGTCATCAG............................................................................................................................................................................................AACGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTCTGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGATGGCGGTGTAAATAATGCGTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCACTGCAATTCCTTCTTGGGGAAAAACATGGCTCTCG................................................................................................................................................................................................................................................................................................ATTCTTGGAGTTTTTGAATGGATAGGAACCAATCCAATGCCACCTGAGTTCTGGATTCTTCCATCTTTTCTTCCCGTGCATCCAG...............................................................................CAAAAATGTGGTGTTACTGTCGAATGGTCTACATGCCGATGTCTTACCTCTATGGGAAGAGATTTGTTGGTCCAATCACGCCTCTCATTTTGCAACTGAGGGAAGAGTTATATGATCAACCATACAATGAAATTAACTGGAAGAAAGTGCGCCATGTATGTGCAAAG..............................................................................................................................................................GAGGATCTCTATTACCCTCATCCATTGGTTCAAGATTTGATGTGGGACAGTCTCTACATATGTACCGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738709" ref_strand="+" ref_description="SGN-E738709 [LC14CH01]">
      <seq>cgaattttttgaccttgcttataccaaactttataatcctacttttaaatatatttttttgttattgctttatacccaaattcctccaatttaaatactataatgagtctttaacataaaaaaataaaataaagttcatccgaatttattgttcattccctttataccttacacactttcagcataaactccctcttattatttaagtaaaatttcactcattttatttcctatctccaacaactctacatataattatcctagtaaggatatatgcaattttcccttcttcattacttttttttttttatcaagtcttcgaaaacaacttctctatcgggtaaaaacaaataaaatacttaagggcaacatatatttcaaatttcaaatattttattgttgagggggaaaactttaaaatttctttcaaactttcaattaaaggatgtgaaaattaaaaattgctaaagggcaaaagggcccatatttgtatagaacaaataactatgttgaacaacaaacgtggaatttcaatccaaatggggaaacaataaaaaaacgggctaaaataaaaaaggctcgccaacaattttgaaataatcgttataaagtcaaccctagtagtgatcttctttggcgaatacattttcttgaaaaaaaaaatttcaaacaaaaatttccaccattaaaatttaaaaaaggtaaaaaaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18096" stop="14246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17798" g_stop="17152" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17151" i_stop="14615" i_length="2537">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14614" g_stop="14546" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="715" r_length="69" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E738709" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17798" e_stop="17152"/>
          <exon e_start="14614" e_stop="14546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTTTGACCTTGCTTATACCAAACTTTATAATCCTACTTTTAAATATATTTTTTTGTTATTGCTTTATACCCAAATTCCTCCAATTTAAATACTATAATGAGTCTTTAACATAAAAAAATAAAATAAAGTTCATCCGAATTTATTGTTCATTCCCTTTATACCTTACACACTTTCAGCATAAACTCCCTCTTATTATTTAAGTAAAATTTCACTCATTTTATTTCCTATCTCCAACAACTCTACATATAATTATCCTAGTAAGTATATATGCAATTTTCCCTTCTTCATTACTTTTTTTTTTTTTATCGAGTCTTCTGAAACGATTTCTCTATCGTGTAAAGACAGATAAAATACGTAAGGGCAACATATATTTCAAATTTCATATATTTTATTGTTGAGGTGGTAGACGTTAAGAGTTCATTCGAACATTCGATTAAAGGATGTGGAAATTGAAAATTGCTGAAGGGCAAAATGGTCCATATTTGTATAGTACAAATAACTATGTTGGAAGACAAACGTGGGAGTTCGATCCAAATGGTGGAACGATAGAAGAACGGGCTAAGATAGAAGAGGCTCGAAAACAATTTTGGAATAATCGTTATAAAGTCAAGCCTAGTAGTGATCTTCTTTGGCGGATACAGGTAAATATATCGACTCATTTCAATCTTTATTGAAGAGATTATGATCCCAAGGTCTCTTACTTCATTCAAAAAAGTCTTTTTTGTGGACCAGTTGTTAGAGGTCATAAAGGATCGTTACTCTATTCTACACAGTGTATTATTATCAAAGGAAAATTGCATATAATAGCAAAGTAATAACCTACAATAAATGGAGTAGCTAGGGTTTGAGTTAATTGTGAGGCGCTTCTCTCCCAAATATCTCGCTCGCCACTCTCCTCCAATCTCTCGCTCGCTTCCTCACTTTTTATACAAACACAAGTGTGTAAAAATTGTTTCTAATTGTATAAAGCAGAGAAAATTGTATAAATACATATATTTTTGTTCCCCCTCTCTCCTCTTCCAGATCTCGCTCGCCACTCTCCCAAAATCTCGCTCGCCACCCTCGCCTTTCTCACTTATACAAACACAAAGCGAAATGTATAAATTGTGTTTTTGTTTGTATAAAGCGTGAGAAAATTGTATATACACATGCAAGTACATATATTTTCATCCTATACACTTATAACTATACAATAAAAATACTCCCATGTCCAGTTTCTTTTGCATTTTTTTTTCGTTTATACAATTTTCAAATTGTATCTAATTTCTCTCTTTCTCGTTTTATACAATTCGATTCAATTGTATATTCCTTGTCAAGTCTCTTTTGTCTTTCTCTCTTTCTCATTTTATACAAATTCAAATTATATATAATCGTTCTATACACTTATAATAATACAATTCATTTTATACACTTCATTTTTATACAGTTCTCTGCCCAAGTGTCTTTCTCTTTCTTATTTTATACACTTCGTTTTATATAATATGCTTCAACTTTGAAGACTTTTTCAAAAGTTTTTAGCAAAAAAAAAAAGCAAAAACAAAGGTTCTGCTGCTATCGACACCTACCCGATTAACCAAAAATATAATCGATCGAGACCAAAACTTATATTTACTATAGAACGCAATTATATAATTTTGCTATAATATACAAATATAAACTTTTTATTTGTTATACGCTGAAATTTGTCCTATTATCAATTCTACCTGACAACATCTACCTACACAAGAGAATTAAATTGATGACATGACTTGTTTTTCATATTCTATATTTATGTCCTAAATTAAATCATTAAAAGTGGGTGGGTGGGGGTGGGGTATATGAAAAAGGTGTCCAATTAAGACTTGAAAGACAAGAGAGAAAAGACCAAAAAAATAGTCTATTAGAGGAAGACCCTAATATACTTTGTGGATTAGTATATAACAACAACAAAAATATAACACTCCCTCCGTCACAAAGAATGATCTGGTTTAAGTTGGTACGGAGTTTAAGAATATGAAGAAAGATTTTTTAATTTTGTGGTCATAAATTAAAGTTAGATCAAATATACAAAATTATTTTTTGATATTGTGGTCTTAAATATATCACGTGGAAAGCTCAAATTAAAATGTTACAAAAAAAAGATGTCATTTTTTTTAAAATAGACTAAAAAAGAAAGGAAATCATTCTTTTTGAAACGGAGAGAGTATAGACCAACAACAATAATAAATACGCTTATAGTTGGAATTCATCCCTCCTTAATTATTTATTTTGAGTTCAAGCTGAAACTGAGTCATCTGTTAATTCGAAGGGTGGTCATTCGTAGATCATTCCCCCTTCAAAGTCGTCTAAGTTAAACCTGTTACATATGATTTGTCTAATACAATTTACATTTCTAATGTGATTTTCAGGTTATTACACGATAAAGAGTTTATCCTAAATACACAAAGTGACAGAAATTACAAATTATACTGAAGCTTCAAATAAAAAACAATCTTTATAACACACGAACCTAAATATAATAGAGCCACAGGGAAAAAAAGTCCTAGTGTTCGATATCATCGAATGTTTGACTTCAAGTAGTGATTATTATTTAATAAAATTAAATAGAGTTGGAAGAGTCAACAACATGTTTTTATCATTCATTTTTTTTTATATAAAATATAGAGAAAAAGAATGGTCACCACTTGTTGATATCACTTTTTACTTTTATTAAATATTTTATTAATAATGTAAAAAGAAATTCTCATATAATTTTATTCGAGCAATTACAAATGATAACTCATAGTAAGTGAAATTACTAACAAAAAAAAAAGTAAAATAATTATCTATAGCATATTCAATTGAAAGGTAATTACATATAACTATTCATAAAAAATAAAATTAGTAATCTAAAAACTGTTAGAATCGAATTCACACACTGAATAAAAAACACAAGAACTTTAGAGAGAATAAGATGAAAGATCTAGAGAGAAAAAGAGAGAAACCAATATTTCGCGGTAACACCCAGTGAGTAAACTTTCACGGCGGTGTGGTATATATATATTAATAAATCAGAGTATTTTTGGTTACAGAGAATAAATGAAGAATAAATAGTACATTAAATATTAATCAGGCTCTACAACCTAACAAAAACTAAGTAAATTAATCTTTTTTTTAGCAAATTAAATTTCACTCACTTTTTTTAAAATTTTTTTTACAGTTTCTTGGAGAGAAAAATTTCAAACAAAAAATTCCAGCAGTAAAAGTTGAAGAAGGTGAAGAAATTAGC</genome_strand>
        <mrna_strand>CGAATTTTTTGACCTTGCTTATACCAAACTTTATAATCCTACTTTTAAATATATTTTTTTGTTATTGCTTTATACCCAAATTCCTCCAATTTAAATACTATAATGAGTCTTTAACATAAAAAAATAAAATAAAGTTCATCCGAATTTATTGTTCATTCCCTTTATACCTTACACACTTTCAGCATAAACTCCCTCTTATTATTTAAGTAAAATTTCACTCATTTTATTTCCTATCTCCAACAACTCTACATATAATTATCCTAGTAAGGATATATGCAATTTTCCCTTCTTCATTAC-TTTTTTTTTTTTATCAAGTCTTCGAAAACAACTTCTCTATCGGGTAAAAACAAATAAAATACTTAAGGGCAACATATATTTCAAATTTCAAATATTTTATTGTTGAGGGGGAAAACTTTAAAATTTCTTTCAAACTTTCAATTAAAGGATGTGAAAATTAAAAATTGCTAAAGGGCAAAAGGGCCCATATTTGTATAGAACAAATAACTATGTTGAACAACAAACGTGGAATTTCAATCCAAATGGGGAAACAATAAAAAAACGGGCTAAAATAAAAAAGGCTCGCCAACAATTTTGAAATAATCGTTATAAAGTCAACCCTAGTAGTGATCTTCTTTGGCGAATACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGAAAAAAAAAATTTCAAACAAAAATTTCCACCATTAAAATTTAAAAAAGGTAAAAAAATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690269" ref_strand="+" ref_description="SGN-E690269 [LH_Ea03B03]">
      <seq>ccattctgttaattaattctcagacggaagatggtgacttcccacaacaggagataactggtgttttctcgaggaattgcatgatacactatgcatcatatagaaatatatttccattgtggggtttggctgaataccgcagaaatgtcttagtaccattaaaacacaactacatatagagaatgcaatttaggccttccgcggattccatgtatagcggtagcttagtgaatcgagttgtccgttgtttgtttgttgttttaatgtaagtgatcacccaagtagtggttagatatgactatgatcgacccttaatcaaatggttcgggttcgagcctcgaggatggaaagaatcttgatatgatatgcttcctcctttagggttctacataggggatctacatgaatccaatgtatacattactcatgaatctactaaatatctattgatatttgtttgtaagctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24307" stop="21963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24007" g_stop="23958" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23957" i_stop="22927" i_length="1031">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22926" g_stop="22671" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="306" r_length="256" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22670" i_stop="22426" i_length="245">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22425" g_stop="22255" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="477" r_length="171" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E690269" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24007" e_stop="23958"/>
          <exon e_start="22926" e_stop="22671"/>
          <exon e_start="22425" e_stop="22255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTGTTAATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAGGTAATTACTCCACGAATTTATCTGTGTTCAGTATTTGGATGAATTTAAACGAAACGAACATAGATGATTCATATATATAGTCTGACTGGAACTAGTTTAGAATCTAGTCGTATTTGATTGATATTGATTAATAAATATAAAGAAACAAGCTCTATCAAACTGGCAAAACTGATACAATACGTGCGTCCACTATCAGTCAACGCACCAGGTCCCTTGACACACTCAAAATAAGAATGAAGAGTAAATAATGACAGAAAACAACACAAGAAGTTTACGTGGAAACGTCCTTGCTCAAGGGAGTAAAATCACGATCTGTCACACAGGATTTTCAACGGTCTTCACTAATCTTCACAAACAAAAGTGAAACCCGATTTGCTTGAAGAGCCTTAGCAGATGACACTCTGTCCACTAAGATATCACCACTAGACAACTTAGGATTCAACTAAGCAACATGCAGGTTGCTCACTAAATCACCATGCTCCGGATGACTTAGAGTTTAACTAAGCAACACACAAGGCTGCCCACTAAATTAGTTGGACTCACCTAATTTAGACTTTTTCAACAAACCAAAATATCTGAATCCTTTATACATTTCGAAACAGATTTACAATGCATGTGCAGAAATAATCCTAAGACAACTAACCTTCCAGCTCTTTCCGATTCGAGTTGATCTTAAGGATGCTTCTTCACTTCTTTTGTCAGCCTTGCAAGAGTTCTTGAGATGTTTTTCAAGTTGCAAAAACTAAGGTTGTGACTATTGGAACATCATCTTTATGTAGAATAGTCACAAAACCATGTCATTGGCCGAGGTTTCTGCCACTATTGGATTTGTGCACCAACTTTTTGTATTTTTTCCAACCTGACAGTTTGTGTGTATATTTCCACTCGGGGGCATGTCTCTTTACGAGGTCCCTGAGTTTGTTATATCATCAAAACTACAAATAACAAAAACAATATTTAATAGAACAGAGATTTGTTAAAACCAGTTTTATCAAATTATTGTTTTTATCTAACTTTATAAATATGTGCAGGAGATAACTGGTGTTTTCTTGAGGAATTGCATGATGCACTATGCATTATATAGGAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAGGAATGTCTTAGTACCATTAAAACACAACTACATATAGAGAATGCAATTTGGGCCTTCCGCGGATTCCGTATATAGCGGGAGCTTAGTGAATCGAGTTGTCCGTTGTTTGTTTTTTGTGTTAATGTAAGTGATCACCCAAGTAGTGGTTAGATATGACTATGATCGACCTGTTAGGTTGTGGAGCCTGATTAATATTTGTTATACTGCAATATTTATTCTCCATTTATTCTCTATAACCTAAAATACTCTGAATTATTAATATATATACCCACCGCCGTGGAAGTTTACTCACGGGGTGTTACCACGAAATATTGGTTTCTCTCTTTCTCTCTCTAGATCTCTCATCTCTTTCTCTTGAAAGTTCTTGTGTTCTAAATTCATCATGTGTGTGTGGATTCAATGCTAATACGACCCTTAATCAAATGGTTCGGATTCGAGCCTCGAGGATGGAAAGAATCTTGATATGATATGCTTCCTCCTTTAGGGTTCTACATAGGGGATCTACATGAATCCAATGTATACATTACTCATGAATCTACTAAACATCTATTGATATTTGTTTGTAAGCTCAATTATTATT</genome_strand>
        <mrna_strand>CCATTCTGTTAATTAATTCTCAGACGGAAGATGGTGACTTCCCACAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATAACTGGTGTTTTCTCGAGGAATTGCATGATACACTATGCATCATATAGAAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAGAAATGTCTTAGTACCATTAAAACACAACTACATATAGAGAATGCAATTTAGGCCTTCCGCGGATTCCATGTATAGCGGTAGCTTAGTGAATCGAGTTGTCCGTTGTTTGTTTGTTGTTTTAATGTAAGTGATCACCCAAGTAGTGGTTAGATATGACTATGATC.....................................................................................................................................................................................................................................................GACCCTTAATCAAATGGTTCGGGTTCGAGCCTCGAGGATGGAAAGAATCTTGATATGATATGCTTCCTCCTTTAGGGTTCTACATAGGGGATCTACATGAATCCAATGTATACATTACTCATGAATCTACTAAATATCTATTGATATTTGTTTGTAAGCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694109" ref_strand="+" ref_description="SGN-E694109 [LH_Ea03B03](-)">
      <seq>gctgttaattaattctcagacggaagatggtgacttcccacaacaggagataactggtgttttctcgaggaattgcatgatacactatgcatcatatagaaatatatttccattgtggggtttggctgaataccgcagaaatgtcttagtaccattaaaacacaactacatatagagaatgcaatttaggccttccgcggattccatgtatagcggtagcttagtgaatcgagttgtccgttgtttgtttgttgttttaatgtaagtgatcacccaagtagtggttagatatgactatgatcgacccttaatcaaatggttcgggttcgagcctcgaggatggaaagaatcttgatatgatatgcttcctcctttagggttctacataggggatctacatgaatccaatgtatacattactcatgaataaagtaaatatctattgatatttgttgtaagctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24303" stop="21963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24003" g_stop="23958" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23957" i_stop="22927" i_length="1031">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22926" g_stop="22671" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="302" r_length="256" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22670" i_stop="22426" i_length="245">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22425" g_stop="22264" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="463" r_length="161" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="478"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E694109" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24003" e_stop="23958"/>
          <exon e_start="22926" e_stop="22671"/>
          <exon e_start="22425" e_stop="22264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTAATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAGGTAATTACTCCACGAATTTATCTGTGTTCAGTATTTGGATGAATTTAAACGAAACGAACATAGATGATTCATATATATAGTCTGACTGGAACTAGTTTAGAATCTAGTCGTATTTGATTGATATTGATTAATAAATATAAAGAAACAAGCTCTATCAAACTGGCAAAACTGATACAATACGTGCGTCCACTATCAGTCAACGCACCAGGTCCCTTGACACACTCAAAATAAGAATGAAGAGTAAATAATGACAGAAAACAACACAAGAAGTTTACGTGGAAACGTCCTTGCTCAAGGGAGTAAAATCACGATCTGTCACACAGGATTTTCAACGGTCTTCACTAATCTTCACAAACAAAAGTGAAACCCGATTTGCTTGAAGAGCCTTAGCAGATGACACTCTGTCCACTAAGATATCACCACTAGACAACTTAGGATTCAACTAAGCAACATGCAGGTTGCTCACTAAATCACCATGCTCCGGATGACTTAGAGTTTAACTAAGCAACACACAAGGCTGCCCACTAAATTAGTTGGACTCACCTAATTTAGACTTTTTCAACAAACCAAAATATCTGAATCCTTTATACATTTCGAAACAGATTTACAATGCATGTGCAGAAATAATCCTAAGACAACTAACCTTCCAGCTCTTTCCGATTCGAGTTGATCTTAAGGATGCTTCTTCACTTCTTTTGTCAGCCTTGCAAGAGTTCTTGAGATGTTTTTCAAGTTGCAAAAACTAAGGTTGTGACTATTGGAACATCATCTTTATGTAGAATAGTCACAAAACCATGTCATTGGCCGAGGTTTCTGCCACTATTGGATTTGTGCACCAACTTTTTGTATTTTTTCCAACCTGACAGTTTGTGTGTATATTTCCACTCGGGGGCATGTCTCTTTACGAGGTCCCTGAGTTTGTTATATCATCAAAACTACAAATAACAAAAACAATATTTAATAGAACAGAGATTTGTTAAAACCAGTTTTATCAAATTATTGTTTTTATCTAACTTTATAAATATGTGCAGGAGATAACTGGTGTTTTCTTGAGGAATTGCATGATGCACTATGCATTATATAGGAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAGGAATGTCTTAGTACCATTAAAACACAACTACATATAGAGAATGCAATTTGGGCCTTCCGCGGATTCCGTATATAGCGGGAGCTTAGTGAATCGAGTTGTCCGTTGTTTGTTTTTTGTGTTAATGTAAGTGATCACCCAAGTAGTGGTTAGATATGACTATGATCGACCTGTTAGGTTGTGGAGCCTGATTAATATTTGTTATACTGCAATATTTATTCTCCATTTATTCTCTATAACCTAAAATACTCTGAATTATTAATATATATACCCACCGCCGTGGAAGTTTACTCACGGGGTGTTACCACGAAATATTGGTTTCTCTCTTTCTCTCTCTAGATCTCTCATCTCTTTCTCTTGAAAGTTCTTGTGTTCTAAATTCATCATGTGTGTGTGGATTCAATGCTAATACGACCCTTAATCAAATGGTTCGGATTCGAGCCTCGAGGATGGAAAGAATCTTGATATGATATGCTTCCTCCTTTAGGGTTCTACATAGGGGATCTACATGAATCCAATGTATACATTACTCATGAATCTACTAAACATCTATTGATATTTGTTTGTAAGCTCA</genome_strand>
        <mrna_strand>GCTGTTAATTAATTCTCAGACGGAAGATGGTGACTTCCCACAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATAACTGGTGTTTTCTCGAGGAATTGCATGATACACTATGCATCATATAGAAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAGAAATGTCTTAGTACCATTAAAACACAACTACATATAGAGAATGCAATTTAGGCCTTCCGCGGATTCCATGTATAGCGGTAGCTTAGTGAATCGAGTTGTCCGTTGTTTGTTTGTTGTTTTAATGTAAGTGATCACCCAAGTAGTGGTTAGATATGACTATGATC.....................................................................................................................................................................................................................................................GACCCTTAATCAAATGGTTCGGGTTCGAGCCTCGAGGATGGAAAGAATCTTGATATGATATGCTTCCTCCTTTAGGGTTCTACATAGGGGATCTACATGAATCCAATGTATACATTACTCATGAATAAAGTAAATATCTATTGATATTTG-TTGTAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451826" ref_strand="+" ref_description="SGN-E451826 [cSTS-14-G16]">
      <seq>atttcttctctttcaacctaccaaacttgaagaaaaaaatcaagaatgtggaaattgacgattgctcaagggcaagatgcatatttatacagcacaaataactacgttggacgacaaacgtgggagttcgacccaaatactggaacgacagaagaacgggccgagatcgaaaaggtccgtcagcaattttggaacaatcgttataaagtcaagcctaatagcgatcttctttggagaatgcagttcctcagagagaagaatttcaaacagagaatttctgcagtaaaagtagaagaaggtgaagaaattagccatgaaattgctacaattgcattgcgtagagctgtccatttcttctcagctttacaggcaactgatggacattggcctgctgaaagtgctggacctctcttctttcttccccctctggttatgtgtatgtatatcaccgggcatcttaatactgtattcccagctgaacatcggaaagaaattcttcgatatatatactgtcaccagaatgaagatggtggatggggtttgcacatagaaggtcacagtactatgttctgtacagctctgagttacatttgcatgaggatccttggagaaggaccagatggtggcgtaaacaatgcttgtgctagagcaaggaaatggattcttgatcatggtagtgtcatcgccattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41696" stop="13016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31912" g_stop="31884" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31883" i_stop="31172" i_length="712">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.925" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31171" g_stop="30954" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="243" r_length="214" r_score="0.821"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30953" i_stop="28562" i_length="2392">
            <donor d_prob="0.359" d_score="0.94"/>
            <acceptor a_prob="0.790" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28561" g_stop="28376" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="429" r_length="186" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28375" i_stop="28304" i_length="72">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28303" g_stop="28214" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="519" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28213" i_stop="27467" i_length="747">
            <donor d_prob="0.815" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27466" g_stop="27291" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="695" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E451826" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31912" e_stop="31884"/>
          <exon e_start="31171" e_stop="30954"/>
          <exon e_start="28561" e_stop="28376"/>
          <exon e_start="28303" e_stop="28214"/>
          <exon e_start="27466" e_stop="27291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCTCTTTCAGCCTACTAAACTTGGTGAGTTTTTACTCTCTTTCATTTTTTTTTAAGAAAACATTTTTGTGATCACTTCATCTTTAGTATTTTGCTTGATATATTATTGAACATTTAGAGAGAGATATTTCGTAGGTAAGTATTTATTACTTTCAATTTTAAGATTGTAAATTTTATATTAGAGAAAGTGCATTAAATCATTTATGAACTTGACAGCAAAATATATTTTACTATTTTAACTATAGTCATAATACATAAATATGTTCCTTTAACTTAGCTTCAAATCACATTTATGCCTTTCAACTTTGGATGTGCACAAATAGATATTTAAATTTGTATAAAATTAAACAAATAGACACACATGTTCTGCATGTCATTTTTTGTCCTACGTGTATTTTGCCATGTAGGACTCACGTATTTATTTATTTAAAAGTTGGATAATTAAAATGTCTGTTTTTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTAAAATTAAGTTTAACTCATCGTACGATATAATAAATTAATAATAGTGACATACATGATACAATTAACTACTAAAAATCCTAATTTTTTTTTATAAAAAAAAATCCATATAATTGTTTACAAGAATATTCAATTGATCATCTTTGGTTATTGTATCTAACTATGGTCCTTTAGATAATTAAATTCACATAAATTACCTATGAAATTCTCATTGATATCACTAAATTGTTATCCTTTTGTAAGTAGAAGAAGATATTAAAAAGATGTGGAAGTTGAAGATTGCAAAAGGACAAGATGATCGATACTTGTATAGTACAAATAACTATATTGGACGACAAATATGGGAGTTCGATCCAAATGCTGGAACAATAGAAGAACAAGCCAAAATCGAAGAGGCACGTCAACATTATTGGAACAATCGTTACAAAGTTAAGCCTAATAGTGATCTTCTTTGGAGAATGCAGGTCAGTAACTATAAGGGTCGTCTCGATCATAAGGCCACAAATTTTCCATCATTTTTGGTTGAAGTTTTGTCATGTGTAAGCTATATAAAAAGTATTAGCTTTAGTTTGACATAATACATAATTATGCCATTTAACTTGGTTTTGAATCACATTTATGTCCTTTAACTTTGGGTGTGTTCAAGTAGACAGTAAAACTTGTATAAAGTTGAACAAATAGATACACATGAACTTTGGGTGTGTTCAAGTAGACAGTAAAACTTGTATAAAGTTGAACAAATAGATACACATGTTCTATATGTAATCCTACATATCATTTTTTGTCCTATGTGGTGTCCTACGTATATTTTGTCAGGTAGGACTCATGTGTTTATTTATTTAATAGTTAGATAGTTAAAGTGTCTATTTGTGAATTATGAAAATTGGAGGTCGAAGTTAAAATTTGAAGCCAAGTTTATGGTTCAATATATGTATTAATTAAAACTTGAGAAAAAATAGACACATTGAATTAATTTATTTTTTAATAAGTCATCTCTGATTCAAATAATGACCCATTTATTGATTCATGCCATTTTAAAATGCTTAGAGAATTAGTTTTATGGCTTAATACATAAACAGATCCCTAAACTTGTTGAATTTGTTCTTTCAGGTACTTCAACTATGTTATTTCTCTATTGAATCATTGAACCACCATAATTTGTTGCTTTTAAACACCGTTGGCTGATGTAGAACAAGATTTTATGAAGGGTATTGATAGAGAATACATATGTTGTTTCATAACTCATTAATCCAATTGATAGAGAAAATATTCGAGAATAATTGTGTTTTACTTCAAGTTATTTGAACACATTAGAAAACAACTGAAACTACCACACAGTTTGTCTTCATTCCTTTAATCAAAATCATTACAATACAAACACAATTGAAGACATTTACAATAGAAAAACCGATCAAAATCGGTTAATAGTATTTAAAAGGAACAAATTATGGATGGTTCAATGATTCAATAGAAAAATGACGCAGTTGAGATAACTAAGAGAAAAAATCAACAATTTTAGAAATCTATTTATGAGTTCAGCCTAGTTTTATAGACTATTTATAAAGCCATAATACATACACATATCATCTAATTTAATCTTATCTTATATTGCCTCTTATATTTATGTTATTAACTTTAAATGTATGCAGGACTTAAACTTGTATAAAATTAAATAAACAGATTGATATGTCCTATCTGATATTGTAGGCGATGTCATATATGTGTTGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGGATTATATTTATGCCTTTCAACTTTGGGTACGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAATAAACACACATGTCCTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTCATATAGGACTCATTTGTTTATTTATTTAAAAGTTGGATAGTGAAATTGTTTATTTGTGCATTACAAAAGTTGGAGGTCAAAGTTAAAATTCGAAGTCAAGTTTAGGATCCAATATATGTATTATGCGTATTTGACTCATGTGTCTAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGTTGATATACCCCTTGTTATGAAAGTGGCTCATATATACCCCTACTTGTAAACAAATGACTCACATATACCCTTTTCCTCTAACGGAAATGAAAAAATAATAATTTTCAATCTATATTTTTATTATTTTTTTTCCAAAAAAATATAATCCCATATGAGTAAATTTAATCCTCGTCAAACATATTTTTTTGACTTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTTTTGAATACGAAATTAAATTACAATACACACAAAAAATAGTTTATTTTTTTTCTTTAAACTAAAGAATGAAAGAAAAAAATAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAATAAAAATAAAAATATACCTTGAACTTTTATAGAAGAATCATATATACCACTAAATAATTTCTATAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAAAATTTCGTTGAATGAAGGGTATATGTGAACCATTTTGTAACGACAGGGGTATATGTGAGCCGTTTGTATAACAGTAAAAGTATATATGAGTCACTTTTATAACGAGCGGTGTATCAGATCCAAATAATAAAGTTAAGGAAATATCAGACCCTTTGTTATATAAGTTAAAAAGTGAAATAATGCCAAGTTAAAAGGACAAATTGACGGATAATACAATTATTGTGCAGTTTTTGAGAGAGAAGAATTTCAAACAGAGAATTAGAGCAGTAAAAGTAGAAGAAGGAGAAGAAATTAGCCATGAAATTGCTACAGTTGCATTGCGTAGAGCTGTTCATTTCTTCTCAGCTTTACAGGCTACTGATGGACATTGGCCTGCTGAAAGTGCTGGTCCTCTCTTCTTTCTTCCACCTCTCGTAAGTTTTTTTTGTTTGAATTTGTGAACTTCTTTCGATAAAATGGGTGAACTAAAGCCAAAATTGTTTCAGGTTATGTGTATGTATATCACTGGGCATCTTAATACTGTATTTCCAGCTGAACATCGGAAGGAAATTCTTCGTTATATATACTGTCACCAGGTATATGATGGAGTGTCACAATGAATATACTAGTGCAAATAAAGTTCATTCTGAATTACTGATTGTTATATCCTGTATTAAGGTTAGTCAAAAAATATTGAAACAAAAATAAGATGAAACGGACAGAAAAACTTTTAATTCGAATCCACCGAAACCATTGTGTTTTATTAAGAAATTTAATTACCTAACTGTATTCGAGATTGCAGATTAATTTCTCCCAAGATAAAAGTTTGAAGTAGCGGTACATCAAACTTCAATTACTTCAGTGAACGTAAGAACAGTAACAAGAGCACAAGCGGAACCTCAAACTTTCCATAACTTCAGTGAACGTATGAACAGTAACAAGAGCGCACATAGACTCAGTCGATTGAATTTAGTTTTTGAGAGAAAATGTCTGCAAAAGTAGCGCTACTTAGGAAAAATTTTCAATGCTTGAAAAAATGAAAAGGACCTCCATTTTATAATCATTTTCAGCAAGAAACGTGTCTGTTCAAACCAAACCAGTTTTATCCAAAAAAAGCTGTCATGCAATGACGGCGCGAGGGGCACCTTCTTCTTGACCCTTTAAGAAGTAAAAGAAGTGTTTCCTAATATAAGGACAACAATTTTCTTTCTTCCACCAGTATGGGAGAAATGACTTTTCATTTTCCTTCCAAAATTGGTTCCCTCACTTTTCCATTTTTCTCTTCTCTTTTCCCATTCACATTTTGCTAAAACCCAACACTGATGACATTCTGTTTTATTCAGAATGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTATGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGAAGGCGGTGTTAATAATGCGTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCATCGCCATTCCTTC</genome_strand>
        <mrna_strand>ATTTCTTCTCTTTCAACCTACCAAACTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAATCAAGA-ATGTGGAAATTGACGATTGCTCAAGGGCAAGATG--C-ATATTTATACAGCACAAATAACTACGTTGGACGACAAACGTGGGAGTTCGACCCAAATACTGGAACGACAGAAGAACGGGCCGAGATCGAAAAGGTCCGTCAGCAATTTTGGAACAATCGTTATAAAGTCAAGCCTAATAGCGATCTTCTTTGGAGAATGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCAGAGAGAAGAATTTCAAACAGAGAATTTCTGCAGTAAAAGTAGAAGAAGGTGAAGAAATTAGCCATGAAATTGCTACAATTGCATTGCGTAGAGCTGTCCATTTCTTCTCAGCTTTACAGGCAACTGATGGACATTGGCCTGCTGAAAGTGCTGGACCTCTCTTCTTTCTTCCCCCTCTG........................................................................GTTATGTGTATGTATATCACCGGGCATCTTAATACTGTATTCCCAGCTGAACATCGGAAAGAAATTCTTCGATATATATACTGTCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTCTGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGATGGTGGCGTAAACAATGCTTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCATCGCCATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691929" ref_strand="+" ref_description="SGN-E691929 [LH_Ea07G07]">
      <seq>ttggtatggtttctggggtgtgtgcttcacatatgcttcctggtttgctcttggagggcttgctgcagcaggaaagagttacagcaactctgcagctgtccgtaaaggcgttgaatttttgctacaaagacaaaggtctgatggtggttggggagaaagctaccgttcttgtcccgacaaggtatatagagagcttgaaacagaacactcaaatcttgtacaaactgcatgggcattgatgggattgattcactctggccaggctgatagagatccaaaacccctccacagtgcggcaaggcttttgattaattctcagatggaagatggtgacttcccacaacaggaaataactggagctttcatgaagaattgcatgttgcattatgcaacacatagaaatatatttccattgtggggtttggctgaatatcgcaaaaatgttttagtaccctcagaaaacaactaaatatatattatattaattatatcttangaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="36561" stop="34487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36340" g_stop="36338" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36337" i_stop="36261" i_length="77">
            <donor d_prob="0.799" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36260" g_stop="36083" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="181" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36082" i_stop="35719" i_length="364">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35718" g_stop="35638" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35637" i_stop="35401" i_length="237">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.660" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35400" g_stop="35317" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="346" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35316" i_stop="34948" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34947" g_stop="34780" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="514" r_length="168" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E691929" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36340" e_stop="36338"/>
          <exon e_start="36260" e_stop="36083"/>
          <exon e_start="35718" e_stop="35638"/>
          <exon e_start="35400" e_stop="35317"/>
          <exon e_start="34947" e_stop="34780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTATATGATATTTCTCTTGCGAGTCCTTGAACTTTCTGCTCTATCAATGCATATGATATGATTAACTATGTCAACAGGTATGGTTTCTGGGGTGTGTGCTTTACATATGCTTCCTGGTTTGCTCTTGGAGGGCTTGCTGCAGCAGGCAAGAGTTACAGCAACTCTGCAGCTGTTCGTAAAGGCGTTGACTTTCTGCTACAAAGACAAAGGTCTGATGGTGGTTGGGGAGAAAGCTACCATTCTTGTCCCGACAAGGTAATGTAAAAGAAACAAAAGCCACGTAAAACAACAATAACTACAGCAATGTCTCAATTTGTGCATTGTAAGGTCAGTTATATGCTATGTTTCTCCGTACTTCACTTGGTGCGCATCACATTCTCCAAAAAGTAGTGCATTCTTGGACAATCTGCAACAACACTTTTGGGGAGTCCTTGCAACATAGTAGGTTATATGAACTCTGCACATGCATCCTACTACATTTGGAATCGTTTCATTCCAATACTGAATATTTTAAGTCTTTAAGTTTTCTATTGGCATGCATATAAATTTACCGCTAAAGAAGCGTATGAAGATGACTGGAAAATATAACGATGATTTAGCTTTGTATTTGATCAAACAGGTATATAGAGAGCTTGAAACAGAACACTCGAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGCCAGGTGAATTCCTTGTTACTAGTAGTAAAAGCATAATACATAAAGAAACACTCAAACTCGGTCTCAGTTGTCAAGTAAGCACTACAACTATGTGAGTGCACATCTACGCACTTCAACTCGTTTCCATTGTGTCATTTGAACACTTCAACTTATAAAATGATCATCTAGACACGTCGAGAATATATGTACCATGTCAGTGTCGGAGTGACAATGAGTCACAATACTTTCCTATTTGGACAGGCTGATAGAGATCCAAAACCCCTCCACCGTGCGGCAAGGCTTTTGATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAGGTAATTGCACTGTAATTTACAAGATAATCATAGGAGAAGATTCTTCAACTGTTAAAAGAACATGCTGTTAAGTATTGGATGAAATAGACTGGGAAAAAACGAAACAACCATAGATGATTCATTTAGTCGAATTGGTCATATTTGATTGATATTGATTAGTCGAGAAAAGCTCAAATATGTCATGGAACTTTCAGTGAAGAGTGGCGGGAATGTGGACTTTGTGTCCCAATGATGACATAAACAAAGCCTAACTATTAACCTATGGCATGACTGAGCCATTTCTGAAAGTTCGATAACATGCACTGAGCTTTTTTCGTCGATTAGTTAAATATGAAGAAGTTTTTAATCTGACTTCATAAATATGTGCAGGAAATAACTGGAGCTTTCATGAAGAATTGCATGTTGCACTATGCAACATTTAGAAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAAAAATGTTTCAGTATCATTAAAAAACAGCTAAAGATATATTACATTAGTTATATCTTAAGAAATAAATAAGGGAAAA</genome_strand>
        <mrna_strand>TTG.............................................................................GTATGGTTTCTGGGGTGTGTGCTTCACATATGCTTCCTGGTTTGCTCTTGGAGGGCTTGCTGCAGCAGGAAAGAGTTACAGCAACTCTGCAGCTGTCCGTAAAGGCGTTGAATTTTTGCTACAAAGACAAAGGTCTGATGGTGGTTGGGGAGAAAGCTACCGTTCTTGTCCCGACAAG............................................................................................................................................................................................................................................................................................................................................................................GTATATAGAGAGCTTGAAACAGAACACTCAAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGCCAG.............................................................................................................................................................................................................................................GCTGATAGAGATCCAAAACCCCTCCACAGTGCGGCAAGGCTTTTGATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAG.................................................................................................................................................................................................................................................................................................................................................................................GAAATAACTGGAGCTTTCATGAAGAATTGCATGTTGCATTATGCAACACATAGAAATATATTTCCATTGTGGGGTTTGGCTGAATATCGCAAAAATGTTTTAGTACCCTCAGAAAACAACTAAATATATATTATATTAATTATATCTTANGAAGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695769" ref_strand="+" ref_description="SGN-E695769 [LH_Ea07G07](-)">
      <seq>atggtatggtttctggggtgtgtgcttcacatatgcttcctggtttgctcttggagggcttgctgcagcaggaaagagttacagcaactttgcagctgtccgtaaaggcgttgaatttttgctacaaagacaaaggtctgatggtggttggggagaaagctaccgttcttgtcccgacaaggtatatagagagcttgaaacagaacactcaaattttgtacaaactgcatgggcattgatgggattgattcactctggccaggctgatagagatccaaaacccctccacagtgcggcaaggcttttgattaattttcagatggaagatggtgacttcccacaacaggaaataactggagctttcatgaagaattgcatgttgcattatgcaacacatagaaatatatttccattgtggggtttggctgaatatcgcaaaaatgttttagtaccctcagaaaacaactaaaaaggtattatattaattatatctaagaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="36561" stop="34487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36340" g_stop="36338" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36337" i_stop="36261" i_length="77">
            <donor d_prob="0.799" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36260" g_stop="36083" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="181" r_length="178" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36082" i_stop="35719" i_length="364">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35718" g_stop="35638" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35637" i_stop="35401" i_length="237">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.660" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35400" g_stop="35317" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="346" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35316" i_stop="34948" i_length="369">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34947" g_stop="34783" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="510" r_length="164" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E695769" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36340" e_stop="36338"/>
          <exon e_start="36260" e_stop="36083"/>
          <exon e_start="35718" e_stop="35638"/>
          <exon e_start="35400" e_stop="35317"/>
          <exon e_start="34947" e_stop="34783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTATATGATATTTCTCTTGCGAGTCCTTGAACTTTCTGCTCTATCAATGCATATGATATGATTAACTATGTCAACAGGTATGGTTTCTGGGGTGTGTGCTTTACATATGCTTCCTGGTTTGCTCTTGGAGGGCTTGCTGCAGCAGGCAAGAGTTACAGCAACTCTGCAGCTGTTCGTAAAGGCGTTGACTTTCTGCTACAAAGACAAAGGTCTGATGGTGGTTGGGGAGAAAGCTACCATTCTTGTCCCGACAAGGTAATGTAAAAGAAACAAAAGCCACGTAAAACAACAATAACTACAGCAATGTCTCAATTTGTGCATTGTAAGGTCAGTTATATGCTATGTTTCTCCGTACTTCACTTGGTGCGCATCACATTCTCCAAAAAGTAGTGCATTCTTGGACAATCTGCAACAACACTTTTGGGGAGTCCTTGCAACATAGTAGGTTATATGAACTCTGCACATGCATCCTACTACATTTGGAATCGTTTCATTCCAATACTGAATATTTTAAGTCTTTAAGTTTTCTATTGGCATGCATATAAATTTACCGCTAAAGAAGCGTATGAAGATGACTGGAAAATATAACGATGATTTAGCTTTGTATTTGATCAAACAGGTATATAGAGAGCTTGAAACAGAACACTCGAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGCCAGGTGAATTCCTTGTTACTAGTAGTAAAAGCATAATACATAAAGAAACACTCAAACTCGGTCTCAGTTGTCAAGTAAGCACTACAACTATGTGAGTGCACATCTACGCACTTCAACTCGTTTCCATTGTGTCATTTGAACACTTCAACTTATAAAATGATCATCTAGACACGTCGAGAATATATGTACCATGTCAGTGTCGGAGTGACAATGAGTCACAATACTTTCCTATTTGGACAGGCTGATAGAGATCCAAAACCCCTCCACCGTGCGGCAAGGCTTTTGATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAGGTAATTGCACTGTAATTTACAAGATAATCATAGGAGAAGATTCTTCAACTGTTAAAAGAACATGCTGTTAAGTATTGGATGAAATAGACTGGGAAAAAACGAAACAACCATAGATGATTCATTTAGTCGAATTGGTCATATTTGATTGATATTGATTAGTCGAGAAAAGCTCAAATATGTCATGGAACTTTCAGTGAAGAGTGGCGGGAATGTGGACTTTGTGTCCCAATGATGACATAAACAAAGCCTAACTATTAACCTATGGCATGACTGAGCCATTTCTGAAAGTTCGATAACATGCACTGAGCTTTTTTCGTCGATTAGTTAAATATGAAGAAGTTTTTAATCTGACTTCATAAATATGTGCAGGAAATAACTGGAGCTTTCATGAAGAATTGCATGTTGCACTATGCAACATTTAGAAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAAAAATGTTTCAGTATCATTAAAAAACAGCTAAAGATATATTACATTAGTTATATCTTAAGAAATAAATAAGGGA</genome_strand>
        <mrna_strand>ATG.............................................................................GTATGGTTTCTGGGGTGTGTGCTTCACATATGCTTCCTGGTTTGCTCTTGGAGGGCTTGCTGCAGCAGGAAAGAGTTACAGCAACTTTGCAGCTGTCCGTAAAGGCGTTGAATTTTTGCTACAAAGACAAAGGTCTGATGGTGGTTGGGGAGAAAGCTACCGTTCTTGTCCCGACAAG............................................................................................................................................................................................................................................................................................................................................................................GTATATAGAGAGCTTGAAACAGAACACTCAAATTTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGCCAG.............................................................................................................................................................................................................................................GCTGATAGAGATCCAAAACCCCTCCACAGTGCGGCAAGGCTTTTGATTAATTTTCAGATGGAAGATGGTGACTTCCCACAACAG.................................................................................................................................................................................................................................................................................................................................................................................GAAATAACTGGAGCTTTCATGAAGAATTGCATGTTGCATTATGCAACACATAGAAATATATTTCCATTGTGGGGTTTGGCTGAATATCGCAAAAATGTTTTAGTACCCTCAGAAAACAACTAAAAAGGTATTATATTAATTATATC-TAAGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692364" ref_strand="+" ref_description="SGN-E692364 [LH_Ea08I10]">
      <seq>cggttgaacataggaaggaaattcttcgctatatatactgtcaccagaatgaagatggtggatgggggttgcatatagaaggtcacagtacaatgttttgtacagctctgagttatatttgcatgaggatccttggagaaggaccagacggtggcgaaagcaatgcgtgtgctagagcgaggaaatggattcttgatcatggtagtgttattgcgattccttcttcgggaaaaatatggctctcgattcttggagcttttgagtggttaggaaccaatccaattcctcctgagttttatattcttccttcttttcttcccatgcatccagtcgaatgttttacatgccactgtcttatctctatggtaagagatttgttggtccaatcacacctctcattttgcaattgagggaagagttatatgatcaaccatacaatgaaatcaactggaaaagagtacgccatctatgtgcaaaggaggatctctattaccctcatccactggttcaggatttgatgtgggacactctctactttttttacgagcctttattgactcgttggcctttcaacaagctgagaaataaagctcttgaggttacgatgaaacatcttcattatgaagacgagaatagtcgatacatcaccgttcaatgtgtcaataaagtactgtgtatgcttgcttgttgggttgaggatccaaatggcagttatttcaaaaaacatcttgctcgggttccagattatttatgggtagctgaagatgggatgaaaatgcagaatagcggtagtcaatcatgggatactagttttgctattcaagcactattggccagtgagatgaatgatgagatatcagatactcttagaaaaggacacgacttcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="40078" stop="37095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39778" g_stop="39732" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39731" i_stop="39357" i_length="375">
            <donor d_prob="0.975" d_score="0.89"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39356" g_stop="39159" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="245" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39158" i_stop="38704" i_length="455">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38703" g_stop="38619" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="330" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38618" i_stop="38427" i_length="192">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38426" g_stop="38279" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="478" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38278" i_stop="38097" i_length="182">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38096" g_stop="37908" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="667" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37907" i_stop="37811" i_length="97">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37697" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="781" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37696" i_stop="37507" i_length="190">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37506" g_stop="37395" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="893" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E692364" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39778" e_stop="39732"/>
          <exon e_start="39356" e_stop="39159"/>
          <exon e_start="38703" e_stop="38619"/>
          <exon e_start="38426" e_stop="38279"/>
          <exon e_start="38096" e_stop="37908"/>
          <exon e_start="37810" e_stop="37697"/>
          <exon e_start="37506" e_stop="37395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGAACATCGAAAGGAAATTCTTCGTTATATATACTGTCACCAGGTATATGATTTAATGCATCAAATTCTTGGAATTTATGTTTTAAGTTGCCAGCATAATACATAAACGTGCTCTTTTAGTTCGGTTTTAGCTGAGCTTAGTGCGGCGAGTATGATATAAAGTTGAATAAGTATACAAACATTCTACGTGACAATTCGCATGACATATACTCGAACTAATGTGTGGCGTTCTACATGTATTATGGCACGTAGGATGTTTGTGTCCACTTGTTTGGTTTTATACAAGTTTAAGTGTCTATTTGTACACACTCAAAGTTGGAGGGCGTATATATCAGCTGATGCCAAGTTAAAATGCATATTTCTGTATTATGTCTTAAAAAAAAAGCTCTGAGTTACTGTGGAATTCTGTATTATTCAGAATGAAGATGGCGGATGGGGGTTGCATATAGAAGGTCACAGTACAATGTTTTGTACAGCTCTGAGTTATATTTGCATGAGGATCCTTGGAGAAGGACCAGACGGTGGCGAAAGAAATGCGTGTGCTAGAGCGAGGAAATGGATTCTTGATCATGGTAGCGTTACTGCGATTCCTTCTTCGGGGAAAATATGGCTCTCGGTATGATTAATTATCCTAGTAACTTTTTTAGAAGAATATATATACTATAGTAGGATTTAAGTTATATACACTTGTAGTGTACAAAATTTTTACAGTATCAATGTGTAATGTTTATTAATCTGTTTGAGTTTGATGGATTCAACGTTTAGGTTCTTATCATTGAACACATTGCATTTTTGAATTTATAGGTTCAAAACTTAGTAGTTTGCTTAAATTCTAGGGTCAAGAACATTAGGCTTGTTGAACTTATTCGTTATTTACTACATACATTCCTCTGCAATTATGGTGGATGGTTGGTTAATTGACGTTATCATTTAGATGACTTGATTCTGCGAAAGACACTATCTTTAAGGATATTTCACCCGGTACAACTGTATCACATATTCACAAGTTCTTCCGGTATAAAACTAGGAGCCAACAATATTGCTAATAAATCTTCCTTCTTATTCGTTCAGATTCTTGGAGCTTTTGAGTGGTTAGGAACCAATCCAATTCCTCCCGAGTTTTATATTCTTCCTTCTTTTCTTCCAATGCATCCAGGTAGGCCAATTTTTTTTATTGCTTTATGCATACACATCCTAAAATTGTCAGTTCATTTTGTTGTAAATATTAATTTTGAAGATTTGCTATGCAATGTTTTCTGGTTGTTTCTATCCTCTGTTAGTGTCGATATATTGATCTTCCAAGTATTTTGACTCTTAATTTAAATGTAGCAAAAATGTGGTGTTACAGTCGAATATTTTACATGCCACTGTCTTATCTCTATGGTAAGAGATTTGTTGGTCCAATCACACCTCTCATTTTGCAATTGAGGGAAGAGTTATATGATCAACCATACAATGAAATCAACTGGAAAAGAGTACGCCATCTATGTGCAAAGGTATGACTATCGAGGGTCGTTTGATTACTGATATTAGAAAAATAATCTCGACATAAATTTCGATATAATTTCTCCCTCTAAAACTTTGTCTACGGATCAAATGAGTCCCTAGTGTTGAAGTTAGTATAGATATCATACTATTTTCTACATATGATCAAAGACAAACAAACTTGTTGCTGCAGGAGGATCTCTATTACCCTCATCCACTGGTTCAGGACTTGATGTGGGACACTCTCTACTTTTTTTACGAGCCTTTATTGACTCGTTGGCCTTTCAACAAGCTGAGAAATAAAGCTCTTGAGGTTACGATGAAACATCTTCATTATGAAGACGAGAATAGTCGATACATCACTGTTCAATGTGTCAATAAAGTACGACAACTTTTTCATTTTTGATAGATTACAAAATACCTGCATTTTCTTAACAACTTCAATCGTTTGACACTTATGTTACACGTGTATGGTGTAGGTACTGTGTATGCTTGCTTGTTGGGTTGAGGATCCAAACGGCAGTTATTTCAAAAAACATCTTGCTCGGGTTCCAGATTATTTATGGGTAGCTGAAGATGGGATGAAAATGCAGGTTGGTAGATATAAATTATTTTCTATAAGCAAGGACATTATACTATTCCACGAACCACAATGATTTACGAAATAGGATCTCTTTTACACGTAATACATGTTTGTAAAATAGAAGGCTAGCTCCTTTTCCTATTGTGAAGTGATGCAAACAACTGTTACTGAAATTGCGGAGTTTTGTTGTTGAATTGCAGAATAGCGGTAGTCAATCATGGGATACTAGTTTTGCTATTCAAGCACTATTGGCCAGTGAGATGAACGATGAGATATCAGATACTCTTAGAAAAGGACACGACTTCATAAAAA</genome_strand>
        <mrna_strand>CGGTTGAACATAGGAAGGAAATTCTTCGCTATATATACTGTCACCAG.......................................................................................................................................................................................................................................................................................................................................................................................AATGAAGATGGTGGATGGGGGTTGCATATAGAAGGTCACAGTACAATGTTTTGTACAGCTCTGAGTTATATTTGCATGAGGATCCTTGGAGAAGGACCAGACGGTGGCGAAAGCAATGCGTGTGCTAGAGCGAGGAAATGGATTCTTGATCATGGTAGTGTTATTGCGATTCCTTCTTCGGGAAAAATATGGCTCTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGAGCTTTTGAGTGGTTAGGAACCAATCCAATTCCTCCTGAGTTTTATATTCTTCCTTCTTTTCTTCCCATGCATCCAG................................................................................................................................................................................................TCGAATGTTTTACATGCCACTGTCTTATCTCTATGGTAAGAGATTTGTTGGTCCAATCACACCTCTCATTTTGCAATTGAGGGAAGAGTTATATGATCAACCATACAATGAAATCAACTGGAAAAGAGTACGCCATCTATGTGCAAAG......................................................................................................................................................................................GAGGATCTCTATTACCCTCATCCACTGGTTCAGGATTTGATGTGGGACACTCTCTACTTTTTTTACGAGCCTTTATTGACTCGTTGGCCTTTCAACAAGCTGAGAAATAAAGCTCTTGAGGTTACGATGAAACATCTTCATTATGAAGACGAGAATAGTCGATACATCACCGTTCAATGTGTCAATAAA.................................................................................................GTACTGTGTATGCTTGCTTGTTGGGTTGAGGATCCAAATGGCAGTTATTTCAAAAAACATCTTGCTCGGGTTCCAGATTATTTATGGGTAGCTGAAGATGGGATGAAAATGCAG..............................................................................................................................................................................................AATAGCGGTAGTCAATCATGGGATACTAGTTTTGCTATTCAAGCACTATTGGCCAGTGAGATGAATGATGAGATATCAGATACTCTTAGAAAAGGACACGACTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605832" ref_strand="-" ref_description="SGN-E605832 [21763]">
      <seq>attaaggatactgtcactcctgtcaatttggttggatatggattggctttcttaggtgtggcgtattacaaccacgccaaattgcaggctcttaaggcaaatgaagcacagaagaagtcttcacaggctgctgatgaggaggctggaagattgttggaggaaagagaaggggagaatggtgctaagaagaatgagtctcagggttgagtttacttcgtattatccttaggtaggatgacattgagaggtgaaacctgaagatcagactataacgtccttgtgcggatgatttaggttctgttttttaggtataaatcgtttacattatctgttttgaggatcttataatagttttattgctcgtattaccttaccagatcgtgcatgtacttgagcatgactcgaggcaatttatgtttattttgacagaatagtaatactagaagagcttttaccgatgaaagtaactgatgctcagctaaatatgtctttgtttcccttgtcttggaatactttatttgtctttaacttcattgccttaagagttaagcaaatgcagctgttgtttaaagctttaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46826" stop="17552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46526" g_stop="45979" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45978" i_stop="45432" i_length="547">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45431" g_stop="45368" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="599" r_length="61" r_score="0.578"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E605832" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605832" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46526" e_stop="45979"/>
          <exon e_start="45431" e_stop="45368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGGATACTGTCACTCCTGTCAATTTGGTTGGATATGGATTGGCTTTCTTAGGTGTGGCGTATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGATG--CAGCTAAATATGTCTTTGTTTCCCTTTTCTTGAAATACTTCATTTGTCTTTAACATCATTGCCTTTAAAGCTTTCCCTTTGAAGTGTTCAACATGTTGAAGTATCGATAGACATAGATGAACCGATGATGTTGGTTGTCTTCGACATGTTCAAATAGTTGACCTGAAATTTGGTAAGATCCAGTCTTGTTGATGTTACTATATTGAATAAACCATATTGTTGTACGACAGATCGATAGATGACATGGTTTTCTTTGGTGTTTTCTTTGAGTCAGAACGTATCTATAAGGTAGTTTGGTAGGTGACATAATTCATATGAGTACAACATGATGCTTTCTGTAGTTCACTTAGCTTGGCCATCCTTTAGAAAGGATGCTTGGTTACTCTTTCGCGCTGTTTGTTTAGCTTGAATACGAGTTAATGCTGCCAATTTTTCCGAGTTTGATAGAAATGTTTGTCGATTTTTTCTCCGAAAGTCTGCCTCCTTGGTTGATTATAGAATAGGCTTGAATTTCTGGACTTAGAAGCAACTCTTTCAGGATGAAGTGATGAGGAATGGAAGTATATGCTTTTCTAAGTAATGTTAGTATTGTGTAGGATATTGATTGCAGATGGGAGATAAAGGAACTAGAGCTACTAATAAGTCATTGTAAACTACCAATAACAACATACTCG</genome_strand>
        <mrna_strand>ATTAAGGATACTGTCACTCCTGTCAATTTGGTTGGATATGGATTGGCTTTCTTAGGTGTGGCGTATTACAACCACGCCAAATTGCAGGCTCTTAAGGCAAATGAAGCACAGAAGAAGTCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGA-----------GTTTACTTCGTATTATCCTTAGGTAGGATGACATTGAGAGGTGAAACCTGAAGATCAGACTATAACGTCCTTGTGCGGATGATTTAGGTTCTG-TTTTTTAGGTATAAATCGTTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAATAGTAATACTAGAAGAGCTTTTACCGATGAAAGTAACTGATGCTCAGCTAAATATGTCTTTGTTTCCCTTGTCTTGGAATACTTTATTTGTCTTTAACTTCATTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGAG-TTAAGCAAATGCAGCTGTTGTTTAAAGCTT-TAAA-AAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714350" ref_strand="+" ref_description="SGN-E714350 [FB11AH01]">
      <seq>attacaaccacgccaaattgcaggctcttaaggcgaatgaagcacagaagaaggcttcacaggctgctgatgaggaggctggaagattgttggaggaaagagaaggggagaatggtgctaagaagaatgagtctcagggttgagttgtttcttcgtttacttcgtattatccataggtagaatgacattgagagatgaaacctgaagatcagattataacgtccttgtgcggatgatttagcttctgtttttttaggtataaatcatttacattatctgttttgaggatcttataatagttttattgctcgtattaccttaccagatcgtgcatgtacttgagcatgactcgaggcaatttatgtttattttgacagaacagtaatactagaagagcttttactaatgaaagtaactgatgcagctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46762" stop="45732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46462" g_stop="46043" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="445"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E714350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46462" e_stop="46043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGAT</genome_strand>
        <mrna_strand>ATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714488" ref_strand="+" ref_description="SGN-E714488 [FB11CD03]">
      <seq>attacaaccacgccaaattgcaggctcttaaggcgaatgaagcacagaagaaggcttcacaggctgctgatgaggaggctggaagattgttggaggaaagagaaggggagaatggtgctaagaagaatgagtctcagggttgagttgtttcttcgtttacttcgtattatccataggtagaatgacattgagagatgaaacctgaagatcagattataacgtccttgtgcggatgatttagcttctgtttttttaggtataaatcatttacattatctgttttgaggatcttataatagttttattgctcgtattaccttaccagatcgtgcatgtacttgagcatgactcgaggcaatttatgtttattttgacagaacagtaatactagaagagcttttactaatgaaagtaactgatgcagctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46762" stop="45732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46462" g_stop="46043" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="445"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E714488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46462" e_stop="46043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGAT</genome_strand>
        <mrna_strand>ATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257295" ref_strand="+" ref_description="SGN-E257295 [cLEG-46-L21]">
      <seq>aaaaatgcctttttactactttctatgaacagtgacaaaataattttttcaagtgaaaagcaacaacaaaggtcaagaatggtagtactactactagtgttcatgaacaatatagaatcttgaaatagcagatcaagaaaatggaacttaccataaagaaaactaaatggatggttcctttagctattgcacttttaatatcttttttcttaatcattttcactctttcaactaaaaccccatttcagaaatcatccattaaagctaaagttccaatctttgttgaatctaaactacatataccttctactagacctatttcaacaatacccaaattggcatatttgatttctggttcaagtggagatggggagagcttaaagaggacattaaaggctttgtaccatccattgaaccagtatgttgtacacttagaccttgaagcaccagctgatgagaggttagagttagtgaactttgtaaaaagggaacctttatttgttgaagttgggaatgtgagagtagttgtgagatctaatttggttacttatagaggacctactatggntagtaatacacttcatgctgctgctattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52132" stop="53332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52432" g_stop="53032" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E257295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52432" e_stop="53032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCCTTTTTACTACTTTCTATGAACAGTGACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTATAGAGGACCTACTATGGTTAGTAATACACTTCATGCTGCTGCTATTTTGCT</genome_strand>
        <mrna_strand>AAAAATGCCTTTTTACTACTTTCTATGAACAGTGACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTATAGAGGACCTACTATGGNTAGTAATACACTTCATGCTGCTGCTATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551025" ref_strand="+" ref_description="SGN-E551025 [TUS-54-N2]">
      <seq>gcctttttactactttctatgaacagtgaacaaaataattttttcaagtgaaaagcaacaacaaaggtcaagaatggtagtactactactagtgttcatgaacaatatagaatcttgaaatagcagatcaagaaaatggaacttaccataaagaaaactaaatggatggttcctttagctattgcacttttaatatcttttttcttaatcattttcactctttcaactaaaaccccatttcagaaatcatccattaaagctaaagttccaatctttgttgaatctaaactacatataccttctactagacctatttcaacaatacccaaattggcatatttgatttctggttcaagtggagatggggagagcttaaagaggacattaaaggctttgtaccatccattgaaccagtatgttgtacacttagaccttgaagcaccagctgatgagaggttagagttagtgaactttgtaaaaagggaacctttatttgttgaagttgggaatgtgagagtagttgtgagatctaatttggttacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52138" stop="53282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52438" g_stop="52982" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E551025" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52438" e_stop="52982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTACTACTTTCTATGAACAGTG-ACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTAT</genome_strand>
        <mrna_strand>GCCTTTTTACTACTTTCTATGAACAGTGAACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688785" ref_strand="+" ref_description="SGN-E688785 [t3_tus_54_N02]">
      <seq>gcctttttactactttctatgaacagtgaacaaaataattttttcaagtgaaaagcaacaacaaaggtcaagaatggtagtactactactagtgttcatgaacaatatagaatcttgaaatagcagatcaagaaaatggaacttaccataaagaaaactaaatggatggttcctttagctattgcacttttaatatcttttttcttaatcattttcactctttcaactaaaaccccatttcagaaatcatccattaaagctaaagttccaatctttgttgaatctaaactacatataccttctactagacctatttcaacaatacccaaattggcatatttgatttctggttcaagtggagatggggagagcttaaagaggacattaaaggctttgtaccatccattgaaccagtatgttgtacacttagaccttgaagcaccagctgatgagaggttagagttagtgaactttgtaaaaagggaacctttatttgttgaagttgggaatgtgagagtagttgtgagatctaatttggttacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52138" stop="53282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52438" g_stop="52982" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E688785" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52438" e_stop="52982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTACTACTTTCTATGAACAGTG-ACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTAT</genome_strand>
        <mrna_strand>GCCTTTTTACTACTTTCTATGAACAGTGAACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701385" ref_strand="+" ref_description="SGN-E701385 [FA15DC11]">
      <seq>acgatctactatggttagtaatacacttcatgctgctgctattttgcttaaggaaggtggtgagtgggattggttcattaatcttagtgcttctgattatcctttggtgacacaagatgatttacttcatactttttcaaccgtgccaagagaacttaattttattgagcatacaagtgacattggatggaaggaatatcacagagccaggcctgtaataattgattcagggctgtacagcctgaataaatcagatctcttctggatcccgcagaaaaggagtatgccaacagcatttaaactattcacaggctctgcttggacgatgctctctcgcccctttatggagtaccttttatgggggtgggataatcttccaagaatagtcttaatgtactatgccaacttcctttcaacgcctgaaggatatttccacactgtcatatgtaatgcagaagagttcctgaacactacagtgaatcacgaccttcatttcatatcctgggataaccctccaaagcaacatccacatgttctaactcttaaggattacaagaacatggttgacagcaatgcatcattcgccagaaaattccgcaggaatgaaccagtgcttgacaagattgattctgagctcttggggcgcaaagtcgatggttttgttcctggtagttggtttgatggcggggattccaacgctacaatctcacagtacattctaagaaacataacttcactgagacctggaccaggtgcacagagaatgaaaagtcttatttctagtttgttgtctgataaagattttagctcaaagcactgcatctagttcctgactggttgncattcgcgtgctataatggaaatctttcggttgaataacggatcaattcatcgttgcttattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52685" stop="57442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52985" g_stop="53103" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53104" i_stop="54961" i_length="1858">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54962" g_stop="55037" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="195" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55038" i_stop="55127" i_length="90">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55128" g_stop="55243" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="311" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55244" i_stop="56547" i_length="1304">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56548" g_stop="57142" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="906" r_length="595" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E701385" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52985" e_stop="53103"/>
          <exon e_start="54962" e_stop="55037"/>
          <exon e_start="55128" e_stop="55243"/>
          <exon e_start="56548" e_stop="57142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCTACTATGGTTAGTAATACACTTCATGCTGCTGCTATTTTGCTTAAGGAAGGTGGTGAGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTTTGGTGACACAAGATGGTATGTAGTTAAAAACTAGTTCTTGCGAGTTGCAATCTTTTTGATCTATCTTTGCCCTTTTCTGTGTGTTTGCTAGTGAGTATCCTTTTCTGAGCTAGTTGGGACTTGGGACCAGGTGTGGAGTAGGTAGAGCTAAGGGGGTTCAGAACCCTTAAGTGGAAAATTGTGCTATTTATACTTGGTTAAAATTAACTTATATATCTTTTTCATGTACTTACTTCATTAGTTTAATATATCAATCTTACTTTCATTTGCTTGAGATTCTTGGTTTTCAGATTGAATAATGGTGCTTGCTTGCTATTGCTTCATTTCTTTTATTTTCAACACAGGAAATGCCAACTAGAGTTGGTGAACTTTGTAGGGTAACTTTGTTTGTTGAAGTTGGGAATGTGAGAGTAGTGGTGAGATCTGATTTGGTTACTTAAAGAGGACCTACTATGGTTAGTAATGCACTTCATGCTGCTGGTATTAAGCTGATGGAAGGTGGTGAGGGGGATTGGTTAGTTAATCTTAGTGCTTTATGTAGTTAAAAACTATTTTTTGAAATCTGTTTATTATATCTTTGCCCTTATCTGTATGTTTGCTAGTGAGTATCCTTTGCTGGACTAGTTGGGAGCATTTGCTTAATATTTGAATATCAGTTTCATTTGCTGAGATTCTTGGTTTTCGGATTGAATAACTGTGGTACTTGCTAGCTATTGCTGCCTTCTTTTATGTTTAATGATAGGTGACGCCAACTTGTTTTCTTCAGTCTCAAATCTGTATAGATGCTTCTATTATAAGTGGTAGCTAGAATTATGGTTACAGTTATGTTTGGCCATTTGTGGTGGTGAAAGTCGAAATAGTAGTGAAGGATTCCAGTAGACGAAGCAGCATGAACGGCAGTAATTTAACTATAAGAGAATTTAGACTTACTAGTTGTCATTGCTCTTACTTCAGCCTGATACTCAATGAAGTCTCTTTTAGTTTGTAAAAGAATTGTATGTTTGTGTAAATATAACTGTGGGAATTAAGATAGTCCTAATTTTTCTTAAATAACACATCTTTTCGAGTATTCAAATGAGATGGACCTAAATAAAATGTGATGGATACAGAACATTCATGTAGCCAAAGGTTAGTTTAGAATTGAGGTGTACTTGATTGATACATCAATTGAATTCCTTTACTATAAATTAATAACTTTATTGGATCCAGGCTTGACATTGATACAAATTTATTTTAAGCAGCAACTATTTTATACAAGTTCAGGAACTGGTTCATTGAGAAAAGACTTGTATGTTCGTGTAAAGTGAGTTCTTAGAGAATCATAATTTGTCTTAAAAATAACATTCTTTTTATTGGAATGAAATGAGCCCAATAGAATGTAATGGATACAAAATAGAAGAATTAACCTAAAGAGTCGTCCATCCAACTGCTTAAACTAAAATAGCCGAACTTGAAATATGTGTATTCCATTTATAAATATGTGTAGAACTGCGTATAATCCATGTATACTAGCTTGGAAATGTAAATGGTGAATCGGACGGTTATTTGTGTAAAGATCAACTAGAAGAATTAACCTAAATAGATCCTACAAAGTACAAAATATCCATGTATCCACCCAGCTAGTTTGGAGTTGAGGTATACTTGATTGCTAACTGGTTGAATTCCTTGTTTTGATTGTTTAGGGGAGTGGGGGAGGGGAGGTGCTTTTGTGTGAAATAGATTGTTGTTGAACACTTCTAGCATTATTGTTATGCTACTCCAAACTGGACATTGCTTAAAAATTCTTCTAAGAGCCTAACGTCATATATGTGTAGACTGGCTCATTGATTACCGTCTTTCTAATGATCCTGTGCATTGATATTGTGTTTGGCAGATTTACTTCATACTTTTTCAACCGTGCCAAGAGAACTTAATTTTATTGAGCATACAAGTGACATTGGATGGAAGGAGTATGTGGAGCTTTTCATTTGATCAATCAACTTTTTTTTGGTGAGATTTAGTGTGTTTAGCTAACTAAAATGTTATATTTCTGTTTGTAGATATCACAGAGCCAGGCCTGTAATAATTGATTCAGGGCTGTACAGCCTGAATAAATCAGATCTCTTCTGGATCCCGCAGAAAAGGAGTATGCCAACAGCATTTAAACTATTCACAGGTGAGAATTTTGTGCATTTGTGTTGATGCAAAAGGAAGCAATCAAGCTCTTTTGGCTGCTTTGTTTTCTTAATCGCCATTCTCAGCTTTCAAAGCGGTATTTAATCGTCTAAAGCCTCCCCGCAAAGCACCTCTAAATTGTTCCTTGGGTTGGTTTTAGTCCTGTTTTCAGCCAATTCTTCCATAGGATTTCCGTGAGTTAGTCATGTGTATTTGGATTTCGAATCTGCTTGAATTAACAACTTAGTATCAAATACACTTCATGAATTTTCCTTTTCATCCTTTCTACTCTATGCAATGATAATATATTGGAATTTCCTCAGGGGTGACTGTCTCTTCCGTTCCTTAACTTGAGGTAGAGTTCATGATAGGCAGACTCATGTTCTCAATAAGGCCACACGGAAGTATAGATGTTAGGGGAAATACACTTTTTAGGGGAAAAACATTGGGTTTTTGGGTGTGGAGGAAATGATTGGTTTGGAAACCGAACAACGTAAAATTTTAAGTGCTAGGAATATCACACAAATAACTTTCTTGAAGGGGCCTTAAGCATGAGAAAACTCTTTCAAATGGCCTTTCGTTGGTTATCCCTGATATGGTCCATGAATAAACATTGTAGAGTAACTGCACATTTTGATACCAAGAGTTTTTACAAAGAGTTAAAACTACAAAACCAGGTGCACCTTATCTTCCTACTACTGCCTGAGAATCAGCTGTCCTTTTTGATTGTCCACTTATGCAATTACACTGTTGTTTTCGCTTAGTTCAAGTGTGATTCCCCATACTACACTATGATCTCTTAACACATTTTATAGTGAGCTATGTTGTGTTATAACATAAAACATGATTGTTTGAATGTCTGAATTGTCAAATCGTATGAAAATGGGAAAGATATCATACTGGACCTGATTACGCAAGCTTTTGGAAAAACTCAGACATTTGCCTCGATTTCCTTGTACTCAGGCTCCTTCTCAAGGGTTTTTGAGAATTCCTACTGCAAAACAGAAAGATGAAAGCAAAGACATTTCAAACTGCCATTTTCATTTCGTCTTGAATATCAAAATGAATACTTTATCAATGGGGTAGTCAGACTAACTCATTTCTGGCAAGCACTATACTGTTGCACTTGCATATGGTTTCTTACTTTGAACAAGTTGCTGTAGGTCAAGTTCTGTCTTTTTTGCTCCTGTATGATCACTCTGCACTCTGTCCTATGTTTATAAATATTTGCCTGTATACAATCAAATATCAATATACATAGTATATCAGAGATTTTGAAATTGTGATGCTATCGCTTTTCCTCAGGCTCTGCTTGGACGATGCTCTCTCGCCCCTTTATGGAGTACCTTTTATGGGGGTGGGATAACCTTCCAAGAATAGTCTTAATGTACTATGCCAACTTCCTTTCAACGCCTGAAGGATATTTCCACACTGTCATATGTAATGCAGAAGAGTTCCTGAACACTACAGTGAATCACGACCTTCATTTCATATCCTGGGATAACCCTCCAAAGCAACATCCACATGTTCTAACTCTTAAGGATTACAAGAACATGGTTGACAGCAATGCATCATTCGCCAGAAAATTCCGCAGGAATGAACCAGTGCTTGACAAGATTGATTCTGAGCTCTTGGGGCGCAAAGTCGATGGTTTTGTTCCTGGTAGTTGGTTTGATGGCGGGGATTCCAACGCTACAATCTCACAGTACATTCTAAGAAACATAACTTCACTGAGACCTGGACCAGGTGCACAGAGAATGAAAAGTCTTATTTCTAGTTTGTTGTCTGATAAAGATTTTAGCTCAAAGCACTGCATCTAGTTCCTGACTGGTTGCAATTCGCGTGCTATAATGGAAATCTTTCGGTTGAATAACGGATCAATTCATCGTTGCTTATTCCC</genome_strand>
        <mrna_strand>ACGATCTACTATGGTTAGTAATACACTTCATGCTGCTGCTATTTTGCTTAAGGAAGGTGGTGAGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTTTGGTGACACAAGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACTTCATACTTTTTCAACCGTGCCAAGAGAACTTAATTTTATTGAGCATACAAGTGACATTGGATGGAAGGA..........................................................................................ATATCACAGAGCCAGGCCTGTAATAATTGATTCAGGGCTGTACAGCCTGAATAAATCAGATCTCTTCTGGATCCCGCAGAAAAGGAGTATGCCAACAGCATTTAAACTATTCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCTTGGACGATGCTCTCTCGCCCCTTTATGGAGTACCTTTTATGGGGGTGGGATAATCTTCCAAGAATAGTCTTAATGTACTATGCCAACTTCCTTTCAACGCCTGAAGGATATTTCCACACTGTCATATGTAATGCAGAAGAGTTCCTGAACACTACAGTGAATCACGACCTTCATTTCATATCCTGGGATAACCCTCCAAAGCAACATCCACATGTTCTAACTCTTAAGGATTACAAGAACATGGTTGACAGCAATGCATCATTCGCCAGAAAATTCCGCAGGAATGAACCAGTGCTTGACAAGATTGATTCTGAGCTCTTGGGGCGCAAAGTCGATGGTTTTGTTCCTGGTAGTTGGTTTGATGGCGGGGATTCCAACGCTACAATCTCACAGTACATTCTAAGAAACATAACTTCACTGAGACCTGGACCAGGTGCACAGAGAATGAAAAGTCTTATTTCTAGTTTGTTGTCTGATAAAGATTTTAGCTCAAAGCACTGCATCTAGTTCCTGACTGGTTGNCATTCGCGTGCTATAATGGAAATCTTTCGGTTGAATAACGGATCAATTCATCGTTGCTTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745469" ref_strand="+" ref_description="SGN-E745469 [GI|47105609]">
      <seq>ggtacaccaattttcatcttactttttttattttacaatacaaaaaccctaaactagggcttttcttcccgccttcttcctcactctcactgtgtcagttccggtgaacggagctgaagagtacacacagattccggtgaacagagctgaagagtacacacagattccggtgaacggagctgaaacctacgcagagattccggtgagcggagattaaagctgagagtaacagagaaacaatggtctccctgaagattttactatctctaattgaatctactgtattgaatcccacacctcctacgccatcggagaggatcgagctgcttcacgccattcgtcactctcttccatctttccagtcactactttcctatccgccccccaagccctcggaccgagttcaagtccagtccaaagaagtgagacttccagattctggcccaatttcactggatgatcaggatgttcaaattgccctaaagttaagtgatgatctacatcttaatgaagtagactctgttcggttgcttgtttctgccaatcaagagtggggattattgggacgtgagccattagagatattccgcctcgcagctggactgtggtatacagagagaagagatcttataacagcactttacacactgttgagggctgttgtccttgatcaaggactggaacctgatcttgtggcagatattcagagatttttggacgatctcattaatgctggagttagaaagcggttaatctcactcataaaggaactcaatcgagaagagccatctggtttgggtgggcctaactgtgaacgctatattcttgattcaagaggagctttggtggaaaggagagctgttgtttccagggaaaggctcattctggctcattgccttgtcctttctgttttggtggtgcgtgcaagccctaaagatgtgaaggacgtcttttctactctaaaggatagtgcagcagggcttagtggtagcactgacactttaagccatcagataacatatagtcttctattctcccttgtggtggctctcatatcagatgcattgagtgcagtacctgataaaacatcagtcttgtcccgtgatgcagcttttaggcaggaatttcaggaatctgtaatggtcactgggaatgatcctgttgttgagggctattttgattgcttaaggagtgcatgggttgtacatcttatgctaatacatgacgggattgatgcaaaagatacatcagcaactgcttcatcaaataatgatataaggaacatctattcatgcttggaagttatattctccaacaatgtcttcctgtcttggctgaataagatcctcctaactcctgcctatcagaatgatgatgaggatatgatctacatgtacaatgcctatttgcacaagatgataacatgccttttgtctcatccattggccaaggacaaggttaaagaagcaaaagagaaggctatgacggcacttggtccgtaccgcttgtctacttcacatgatcatactgtggagggaattgggcattttcaaaaggccactgaacctgcaccacaaacttttgtctctctcttggagtttgtgagtgaaatttaccaggttagtgccttttcttgctaattttggagtccctagggcattatcactacgaaaaggtatgaacggtgataccaaattgattttgtatttcaacacataaaactcttgaatatggaaaacaattcaaaactatctttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58027" stop="70980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58326" g_stop="58705" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58706" i_stop="59356" i_length="651">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59357" g_stop="59452" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="476" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59453" i_stop="61529" i_length="2077">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61530" g_stop="61604" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="551" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61605" i_stop="64120" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="656" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64226" i_stop="64309" i_length="84">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64310" g_stop="64420" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="767" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64421" i_stop="64837" i_length="417">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64838" g_stop="64997" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="927" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64998" i_stop="66023" i_length="1026">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66024" g_stop="66109" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1013" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66110" i_stop="66673" i_length="564">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66674" g_stop="66796" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1014" r_stop="1136" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66797" i_stop="66872" i_length="76">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66873" g_stop="67103" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1137" r_stop="1367" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67104" i_stop="69387" i_length="2284">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69388" g_stop="69477" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1368" r_stop="1457" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="69478" i_stop="70367" i_length="890">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="70368" g_stop="70686" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1458" r_stop="1776" r_length="319" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E745469" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58326" e_stop="58705"/>
          <exon e_start="59357" e_stop="59452"/>
          <exon e_start="61530" e_stop="61604"/>
          <exon e_start="64121" e_stop="64225"/>
          <exon e_start="64310" e_stop="64420"/>
          <exon e_start="64838" e_stop="64997"/>
          <exon e_start="66024" e_stop="66109"/>
          <exon e_start="66674" e_stop="66796"/>
          <exon e_start="66873" e_stop="67103"/>
          <exon e_start="69388" e_stop="69477"/>
          <exon e_start="70368" e_stop="70686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACACCAATTTTCATCTTACTTTTTTTATTTTACAATACAAAAACCCTAAACTAGGGCTTTTCTTCCCGCCTTCTTCCTCACTCTCACTGTGTCAGTTCCGGTGAACGGAGCTGAAGAGTACACACAGATTCCGGTGAACAGAGCTGAAGAGTACACACAGATTCCGGTGAACGGAGCTGAAACCTACGCAGAGATTCCGGTGAGCGGAGATTAAAGCTGAGAGTAACAGAGAAACAATGGTCTCCCTGAAGATTTTACTATCTCTAATTGAATCTACTGTATTGAATCCCACACCTCCTACGCCATCGGAGAGGATCGAGCTGCTTCACGCCATTCGTCACTCTCTTCCATCTTTCCAGTCACTACTTTCCTATCCGGTAAATTTCTATTCATTTTATTTGGTAGGTCAGTGTAGCTATTGAAGTGAACAAGGAAAAAAACGAGTTTTAAGCTTAAACAGTGGATATCTCAATTATATATATAAGAATGTGTGAGATATGAGGAACAAATAAACTTTAGTTTGAGTTTGATTATTTATTGTTGAAATTTAGTAGACCAGAACAGAGTCCTCATTCATAATGAAAAAAAGGAGGTCTCAAATATTGATGAATGGATATAGAGGATTCGTATAGCCTAGCTGACCTAATTAGGTTTGACTTAGGGATCAGCTAATTGAATGATTGATTGAATTATGCAGTTGTTATTGAATTTCTTTTTTAGATTGTAGAAATGTTATTTTTCTGAATACTCAAGCATGTATATCGATGCGTTAAGAGGTAATTATTTGTGTCTATTGATCTATGAATTTCATTTTCTTGGAATGGTTGGTTTGTTGGTTGATTTTGCTTAAGAAAGAAATATGTGCCTGTGAAATGTTTTGGCCAAAATGAGAATTTTTCACATTGTCTTTTTTTTTTCTCCTTTCAAAATGTGGATTTTTTTTTGAAATTAAAAATATATGTGGAAAAATTATTGTGAAAGAATGATGTTATCAATGACCAAGCTCACTTTTCCCCCTTAATATGTAGCCCCCCAAGCCCTCGGACCGAGTTCAAGTCCAGTCCAAAGAAGTGAGACTTCCAGATTCTGGCCCAATTTCACTGGATGATCAGGATGTTCAAATTGTGAGTTCCGTCACGTGCTGTATTCTCATTATACCATATGTAACTTAATTCATGATTTTTTTTAAAGGATTCTTTTTTTTTCATTACTATCAAAGCATCATAATCCCTTGGAAATTATAATTGGATACTTGCTCATACTAATCTATCTACTCAAGAACGGTTTTTCAATATCAAGTCCCTAAACCTTGGGAGCTGTAGCTCAATATGAGCTAGAAATCTCTTTCTGTGTAATAATTATGTCCTTTTACCAAATGTTACTACACAGTATTTATTTGAGTATGAGTGTTATAGACGGGTAATTTAACAAAGAATGTACCACGAAATGCCACAACTGTTACAGGTAGAATGCTGTTATAGAGAGGTAAAATATAACATGAAAGTTTGACTCTGGAGAAAATAAGGATGTTATAATGAAATGCTGTTATAACGAGGTTTGATTGTACATTGTTGGGTTGATGTCAACTGGACTTATCTTATTTTCTTAGTTAATAATCTCCACCTAAAAACTAGCCATCATCTCTTTACAACCTAAACTTGACCCTTCTGCTAAGAGAACATTATTCTACTAAATGCTGGGAAAGAAAATGTAGAAGACGGACAAAAAATTGTATATTATTCTGAATGATGGCCTCACGAGCTAAAATTGTGTGGCAAACATACAGTGCCATGTTAGCAAAATGTGTCTAACAGACACAATTTAACTTGAGTTTAGGTGGGGCTGCATATGTATTCAGCCAATATTTTGTAATGATAAAATACATATACCTAAATTGTGACTTCACCCTAATTTTTTTTAGTTAAAATCATTGTATCTCTCTTAATTTCTTTATTAATTTTGGTCAAAGTACCCAAAATTGATTGACCATATCTGGTAAGGATCCCACACCTACAACCTTAAGTGGTGAACTATATCTGTGGATATATAGAAGTAGTGTTACCTTTCTCAAAAAATAAAAGTGGTGAAGGTTGCAGAAACTTTTAGATGTAGCTGGGAAGATATTCCATTGTGCTGAGATGTGAAGTGCATGTGCTCCAAGCATTGCTGGGACTTATTTCTTAGTATCTGTGGTCTTCCTTGGATGATGCCTAATAGCATCAGTGGTTTGTTAGAATGATGGCAGGTAGACATATTCCAAAAGGATCTGAAACAAATATGTTTCATTTTTCCTCTCTGCATCTTTTGGACTCTATGGTTGGAGAAGAATAGAGCTTGTATTGGAGGACAAAAAAGTCATATTAATAGGATCAAGAACACCTATTTGCATAATTTTTTTTTTCTGGTGTAAGAGTAGGCATATTGATGGTATAGTGCAGTTTATGATTTTTCGAGAAATCTTAGGAGGAACAAATTAGTTGCATAGTTGTCATAGATCAGTTTATTTTGGTCTTTCAAGAGTCTTGTACTTTTGTATTTTCATTAATAGCACCCTTACCATCTGAGCACATTAAGCCGATGCACTTGATGATACTGAGAATGAAGGAAGCACGGTTATGTGCACAAAAATTGAAATAGAGTTGACATGTCTGCTCCCTCTGATTCCCTGTGATTTAGGGGCATGAGTTGAGACTCACAGCCATAATTATCTTTTAATGTCATTTTCAAAGAAAAAAAACTTTTGCCATTTCAGGACGAAAAACTCTTCATTCGCCTCGCCTGACTGCATCTTGACCAATTGGCATTGCAGTCTCTAGTGTAAAGTAAAGTCAATGTAGGTATTAGAGGAATTCAAGCAAGATTTACAAATGCAACTATTGGATGTAGTGAGTGGAGAAATATTAGGGGAAGAGGAAGACAAGAGTCACCTCGAATGAACTAAACAAATAATTGTGACATGTGTGGGAGGTAGAAAGTATCCTATCGAATTAGTCGAGGTGCATATAAGTCGACGCGGACAACACAGTAATAAAAAATTGTGTTCACACACATAATGGCGAAATTTAAATGTTCTATATCTACTTTGTCTTTGAATTGAACACCTGTTTTATCTTTAGGTGCATATTGTAAATATTTCTCTTTCACATTTGTTTTGGTGTTGCAAACAATTTGTATTGTTCTAATTTGTTTTGTGATATTTAGGCCCTAAAGTTAAGTGATGATCTACATCTTAATGAAGTAGACTCTGTTCGGTTGCTTGTTTCTGCCAATCAAGAGGTAGGTCATTTTCTCTATTTGTTTGTCTTGTAGAATTTTTGGAATTTCTTATGTAATCAGTTTTTGCTTATGCAAAGAGTACTATACAGTTTACTCCTCTTTGATATTTGAAAATTTGCGTTGCTTCCCTTTCTGGACATTGTTTTTGTTGCCTCTAGTCCTTGCCCTATCGGGATAAAGGTAGTGTCTTTGACCCATGTGCAATGTGATCATCGACTCGATAAGCTTCTTTCTAGCCACCACCAACAGTTGCACTTGCACGTAGGTTTGATTTTTCTGCCTCCTTATGTGTTTGTTTGGAGGAAGCCTCCACAGTGATCTCTCACCTCCTTAAACAGTTGGTTCGATCGAAGGTGTAGCAGAGTAGCCTCATTTTCACACCTCTAAGTTATTGACTGACTTGATCCAACTGTCAATTCGGGAGTCAGGACAAATAATCCTATAACTGGAACTTCCATCATTCTCCTGCTTTTACAGTTCCAACTTTTTTTTTCTTGAAATAGGTAACTTTATATTATATCACAAAATAGTACATGGTTGTACTGGAACCATTATATACAGATGTCTCCTTTTCCACTTGTTTCAGTCTATATTGAGTCTAAACATCAATTACTGATTAAGTGTTGATGGAGTATACTTGATTACACCAAAAACATAACAATAGAATGCAGTTTAACTCGACTTTCTGGACATCATTCTCTATGTTCTCAAAACACCTAGAATTTCTTTCTTTCCAAATAGTCCACCATATACTCGCAGAGACAATTCTCAATCTGTTTCTGTCCTTTGCATTCTCTAAGACCTTCCTTGGCATTGTCCAGGAGATGCCTTTGAGATTTGAAAATCCTCCATATTTGTTGGGTGTACTTGCAGTGTAGGAACAGATGGTTCACGGTCTCTAATGCCTCCCCACAAAGAAAACAACTAGAGCATAAGGTTATCCCTCTTCTCTTCAAGTTATCTGGAGTCAGAGCAACTTCTTTGTCCAATAACTATATGAAGCATGAGATTTATGTGGTATTTTGCATCTCCATATTTGTTTCCATGACCAACTGTATGTTTGTTGGTTTGTCCGATCCATCAACTTGTAGGCTGAGTTAACTTTGAATATTCCCCTCTGCTATTTCCCTTCCACCACATAACATCTTCCGCTGTCTGTTCATCTGGATAGGAACTAAAATAAGAATATATAGGCTATAGGTTATTCATGTCTCTCTGCTTGACGCTGGCCAAGAGTTCCCACTTTTCTATTTCATCCTTGCTGGCTACCTCCAATGAGATTTAACTGTAATGACCAATCAAGATAAATATTTTTGGAGATCACTGTAGGCTTTCCTTGAGATTGCGTCGGCATATATCAAATCCTTCCTCTCCCTGCACATATGAACTTTTGATCTTTTGGCTCATTGGGGCTTGGATGTAATTTTTAGAAATATGGCATAACAAGCAACTCCCTTTTTTCAATTTTCTCAGTTGGCTCACAAATCTGCTCATCTAGTGTTGAGTCCTAGGTCTGGTCTGATCCATATGCTTTGTCCCTTCCTTTTTATTTTGATTAACTTGACAAGATTTCTCATCAAAAGGGTCAAATCAGCCATAACAAGAGGTATAAAGAACCTACAAAACGATATGGTTCTCTACAAAAATACCCTATCCTATATACAACCAGGAACTGCATGGGTGCAAAAAACAAGAAGGAGATTGGTGACTACTCAATTGTCCAAAACTCATTTTTCTGATAATAAAGGGAACCCATAGTTGCTACCCTTTGGATGTGCGCAAGGTAAACCCTGCTCCAGTGTAATAACACGCAAACTACACAGGAGAGGTAAACTACACCTGGCAGCTTGACCGAGAAGGCATGCAAAGATTTTTGAACCTTAGACCCCTTATTTGAGAGATCTCCTACTCAACCAACTCGGCCACCCTTATGGATTTCAACTGACCAAAACTCATTTCTATCCATTTAAATACTCTCCTGTTTCTCTCTCCAAAATAATCCACATCAAAGCCAGAGGAGCAACATTCTATCTCCTGCTTATTCTTTTTTCTTCTTACATCTTTCCTGCAGCAACAAGTCATTTACAGATCTAGACATCACCCATGACATACCTTCTGCCCTTCCTTTATGTAGCTTCCACCCTTACACAACTGCCAAAAGCGTTGAGGTTCTGTATTAACTGATATCATAAATTAAGGTGTTCTTTCTGGTGCTGTAGAGTTACCTTCTTTGATGTATCACTATCACAACCCCATCAGAAGGTTGCACTATTGAGACATTCTGTTCACTAAGCTGGTAGATTTCAAGCCATGATGTGACAGCTCAATAATCTTAAGCGCTTCAAAGAATGAAGTTACTTTTTGTCTAGACATCTCCGACTTAAGTACATTTAGTTTTAGGAGCTGAATTCGGGTTTCAGTCACCACCTATAAGTTCTTCTTGATAAAGAAGTTTTCTTCAACACTTTGTTTTCATGACCAGTTTTCACTCTCTTTCTGATTATTGATGCATGCAGTGGGGATTATTGGGACGTGAGCCATTAGAGATATTCCGCCTCGCAGCTGGACTGTGGTATACAGAGAGAAGAGATCTTATAACAGCACTTTACACACTGTTGAGGGTATACTTCTTTCTTAGTTTCTAGGGATAGAGAAGTTTATCTCTTGTTAGCTGCCTGTTAGATATGACACAAGTTATTTTGCAGGCTGTTGTCCTTGATCAAGGACTGGAACCTGATCTTGTGGCAGATATTCAGAGATTTTTGGACGATCTCATTAATGCTGGAGTTAGAAAGCGGTTAATCTCACTCATAAAGGTTGTTTGATTAACTTAATTTTCTTTCATGTCGATCCCTTTGAGTTACATCTGTTCATTTTTGACCATCTTTATCGACAGAGCTTAGATAGACAGTTTTTTTTGGTTGGAAGAGTGTTTTGTGTGTGTAGGTTTTCCTTCAAGTCAACCGTTCAAATTTTTCACTAGTAAGTCCTTAAGTACAAATTCAGAGTCGTATTTTTGATGTAAAGTATCTTCAGTGTCATCTAAATTAAATTTCAGGTAATTTCAAAAACCTAGGACGGTTGTCCTCTCGATGATACTGAGAATGTTCCTTCAGTGCACGTGATCATGTGAAACATGAGTTCATAAATTTGTTTGTTGTTCATTTGACAGAAGTGAGGTGAATGAATATATGCTGATGGTTTCTTGATATTATATGTTGAGTATTTTTTAGGAACTCAATCGAGAAGAGCCATCTGGTTTGGGTGGGCCTAACTGTGAACGCTATATTCTTGATTCAAGAGGAGCTTTGGTGGAAAGGAGAGCTGTTGTTTCCAGGGAAAGGCTCATTCTGGCTCATTGCCTTGTCCTTTCTGTTTTGGTGGTGCGTGCAAGTAAGTTATGGATGGCTATATTTTGATCTTATCCTTATTCACTTCCAAGTTTTTTTAGTCATAGAAATTGTTTCTATTAGGACATACTTATAGTGGCACTATTCTTTTTATTATTGTGTGGGCTAGTAAGTTATGATTGCTTAAGTTAACTCCCGATAAGGATATGCTTATCTTTTCTTCGTTTTAGTTGGGCTTGCATGGTTTCAGGGAAATATGTTGCCAGAGATGATTTCCGGGTAAATCCTATAATGGATCACTGGGATGGTTAATCATTCTAATATTTTCTTTTAGTCCTACTTGACGATGATTGATACAGATTGTTTGTGCATAACCAAGTGTTATTTTCATGTTTAAGAAGCCTGGTACAGCAAGCATTTAGCTAATATGCTTTGTCACATCGTTTTAGACGATTACATGATCATAATATCAGACATCAGTTGTATGTTTCTGAAGTATGTTTCTGTGTGCTCATAAATATTAGTTAAATGTTTTTGAAGTTGTGTACGCTAGAGTCCCATCAATCTGCTATATCTGTTTGTCTGGCCTTATTTTTCTGCATATGACTCCAACACTGAAGTCAACATCCTCAATGTGCTTTGCGCTGTAGAAGAAACTGTACTCATTTGATTGTTATATTAATTTTGTGGTTCTTCAGTTTCCATTTGTCTTAAGCCTTGGGGATGGAGTTAATCAATACTTGTGCTGGTGGGAGGTAGCAGGTACTTAATGCAATAGTCGAGGTGCCCACAAATTGGACTGGCTACCACGATTATAAAAATGTTGTGGTTTCCCCGTTATGATTCTCTGCATGACTTTGTCCCCCTGAATGGGTGTACAATGTGCTTCGTACATCACAAAATGAGAAATGTTCGTTAGCCACTGTTTCAAGTTTTTAGTGTAGTCAGGAATAGCATATATGCCTGGACTGCTCCACATCTCATTTATTCTCCTTTACAGCAATTTAGTTATTCTGTATTTATGTATCTCTTTACCACTGAAAAAGTAATTATCTCTTTCTCATTGTAGGCCCTAAAGATGTGAAGGACGTCTTTTCTACTCTAAAGGATAGTGCAGCAGGGCTTAGTGGTAGCACTGACACTTTAAGCCATCAGGTTTTCTCAGTTTTTGACCATGGTTTTTTCAAGCTTAATGATGAAAACTGATTACAAATTCGGAAGTAGTGGCTTGGCCGGGAAGTTAAATCATCGAATCTTGGGCATTTAATAGATGGTTCTTTTGAAGCTGTATCCTTTCACATAAGAACCTTGTAACTTCTCCAAGTGCCACTTTATGTTCTCTCTCTCTATATATATATATAAGTCAAACTACGTGAAGACGCCAGCATTGGATTTTAAAGCTCAGCCTGTCTCTATACACCATCTCAACTCTTGTACCTGAATTGGGGTTTAAAGCTCAGCCTCAGTCTCTATATACCACCTCAATTTTTTGTTCCTTTAAGAGTTCCAGTATTTTGATTTTGGGGTTTTGCTTTAGGATTATCAGATCTAGATTTTCTTTACATTCTCCTTTTCTTTTTCAAATGCCGAATAGAGGATGGAATGAAACTATTTTCTATCTTGAACTGTATGGCATGTACCCTCTAGCTATCCCTCTTTTCTTGTTCTTCAGTATTTCGCTCTATACTTCTATCTGATCCTCTTTTGAAAAAACTGCAGATAACATATAGTCTTCTATTCTCCCTTGTGGTGGCTCTCATATCAGATGCATTGAGTGCAGTACCTGATAAAACATCAGTCTTGTCCCGTGATGCAGCTTTTAGGCAGGAATTTCAGGAATCTGTAAGCAGACAACCATCTTTTAATGTTTGACTACCAATGGTTTGTCATTTTCAAAACCCTCTATATCTTTTTTTAGGTAATGGTCACTGGGAATGATCCTGTTGTTGAGGGCTATTTTGATTGCTTAAGGAGTGCATGGGTTGTACATCTTATGCTAATACATGACGGGATTGATGCAAAAGATACATCAGCAACTGCTTCATCAAATAATGATATAAGGAACATCTATTCATGCTTGGAAGTTATATTCTCCAACAATGTCTTCCTGTCTTGGCTGAATAAGATCCTCCTAACTCCTGCCTATCAGGTGAAAATTGACTTGTCTCTGATTAAGCAACTACTGATGTTTTATCTTAGCAATTCTCCTTATCCCTGTTATGATTATTCTGGTGTAATCAAATATACTTAAGGTAGGAGTTAGCAGGATTTTGAAGTAAAATTTGTGTATATGGTTTTCAGTACAACCTGTGTACTGTTTGTGAAGAAATATACGAAGTTACCTGTTTAAAAAAAATTATTCTGGTCTAACATGACATGTGATCCCCCCCCCCCCCCCCCCCACAAACCCCAAATCCGAACAACAACACAACAATGAAACTCATTGCAATTTTGGAGGGAACGACATGGGTGCCTTTCATTTTTGGAGAGTCTGAGCATCATAGAAACTCCGAGATTCTGCACTTTTAGTCCTCTATCTCCCTTCCAAAAAGTGTGCATATGATAGTCAGTGTGGAGAGAGAGTTTGGGAGATGCTTTGAAGACAAATCAAGGCCCATCCATGTTGTGAAAGGGAACTGCCTATCCACACTGTTTTTGTGGTGTAAAGGAAATTGTATAGAGGAAATAGATCTTGTAGATCTCATAGTCTCTCCGTAATCTAGATTTTTATTTTTCTTCCCCTTGTAACGCTTTCAGAGATAGCCAGCATTCCTTAATGCCAAGGGATATAGCCAGCATTCCTTAATGCCAAGGGATACCATTTATAAAAAAAACCTTTAGATCTTTAATCCCAAAGCTATACCAACACCAACACTTTGATGTGGTAGTAGACTCCCAATTTACCATGTAAAACTTCGTCTATCCGCTTGAACCATGCCATAGAAAATCTCTCAATCTCTCCAACCAGAAAAAGAAAAAAAGAAAATCTATCATTCTCTCAAGTTTTTCAACTTCCTCGTAAACCTGACTGGAGCATGTAGCAACAATGTGAAATATGTGGGAATACTCGATGATAGTGTACTCTTGGTTAACACATTCTTTCCACTTTGGATAGGCCTCATTGCCAACTACATGCCTCTTTTATACCCTTCTTATGTCCAGATTCCAAGCTGCTTGGTGTTTATTAGATGTTTCTAGTGGTTAATCAAGATATGTTGTAGAAAAAGACCCAATGTTACAATTTAATACCTGTGTTAGGAGCTATATATTTTCTACCAAGCTGACTGGGATGATCACACATCTTCTAAGATTGATCTATAGGTTTGACACCACCTGGAATCATGTCAACACTTGTCTCAAGTAAGTCAAATGAGCATTGTCAGTATCACATAACACTAAAGTATCATCTGCAAACAAAGGTATGGCACTCTTACAGTACATTGTCAAGCTACTGTTGGAGAAAACATCCTCAAGTAACCTCCTGCTACAACTCTATGCATCATCCTGTTAAATGCTTCCATCAGGCCGTTACTAGAGTGAAAAACATAGGGGAAAGCGGGGTGCACAGTCTCACACACCGAACAATCTACATGGACTACCATTCATGAGTACTTGGCTGTTGAGATGCAAAATTTGATCAATTTCTACCATCTTGCACCAAAATCCATTATCAGAATAATTAAGTTAAGAATTTCACTGTCACAATGATCACAAGTCTCTTCAAGATCTAGTTTGCACAAATCCGGGGTTCTCCTTGCTTTCTTCTCGAATCACACCACAGCATTTGCAGCTAGTGCTGTATCTAGAATATGTTTGCCTTCCACAATAACATTTTGCAAAGTAGATACTATCTCACACAAGACCTTCTTTAATCTATTAGAAAGCACCTTCAATGTAATATTATGTGGCCCATATGGAGAGATAACCAGGATAGCTTTTCAAGGAGTAGAAAATGCGTTTGTACACTTGAGGGGTAACCGCTTATCACCTATTTCTTTTTGGTGCGCCCACGAGGTGCCTAATAATCATAGAAGATCATATATTTTTGTTAAGTTTTCACTTTTAACATCGTACTAGCCTATACACTTTTTTTGCCGTACATTAATAACATTATTACTTTATTAAAAAATAGGCAAACAATCCCATCACTTAAACATCCTGTTTTCTGCATAATGTATTGATTATTGGTTGCTGGTTGTAGAAAATCGTATATTTTTGTTATTTCTTTTTTGTCTATCTCGTGATGAATCACCTTCCTTGTGATTTTTTACTCCTGTAGTTGTCATGGGTAATTGGCATATTTCTTGAGTTGTGTAAACAGATACATGGTCCTGGTAGCATATCATGCTTGTTGGTTTGACCCTGTTTTTGTAATTGTCTAGTCCTTCCATTTAGTAATTAACTCAGGTTTCTTTTCTATCTCTCATGGGCAGAATGATGATGAGGATATGATCTACATGTACAATGCCTATTTGCACAAGATGATAACATGCCTTTTGTCTCATCCATTGGCCAAGGACAAGGTTTGTTTAGTTTCTTTTGTTTCAATATTCTAATATTTTTTGAGGGTAAATGATTGAAATTGACTCTAAAAAAGAAGTTATGCTTGTTATTTCCACCCAATTCTGTAGTTCTTTTCTTTCTGAGGCACATGCAATCCGAGGAGTCCGAGTCCTGCTTTGCTTGCTGTCCAGCCCCACCCTGCTGGGATTTTGTTACACTGCCATATGAGTTCATGTCCTATAAAGCAAATATGTAAATTTACACATTCACTAACTTGTATTTATGTGGTGTGTTGAAGCTCATGTATAGTTGGGTTCTCTTTATGGCTGAATAATGAGTGTATGTTCCCCAAGTATCCCTATGATAAAATGCCGTCCTTGCTTTCTCTATCCCATGTGCTATTAGGTATTGAGAGAGATAGAAGAGCTTTGATGAAGTAGAGAGAGTTTTTGTCCACTTGAGGAGTAGCCTCTTTGTGGGACTACACTGGGTATGGTATTGTTGAGGAGTAGCCTCTTATCCCTTGTATCCTTTTGGTGTATTGCATGGTTGTGCTTTTTGTTGTTCTATTCAATATGTACTTGCTTGAATTTTTCGAAGGAATTTCTTTAATTGGAAAAGTTTTTCTTTCTTTTTTTGAATGAGCTATGAAATTGAGATTATTGTTCATTGTTTGGATTAAACTTTTAGATGGTGAACAAACGATCATGAATACAGGCTGTGTCTTGTTGTTTTTTTGGAAAAAAGCTTTAAATTCTAGTAAGGTTTTTTCGTATCAAGTGATCTTGAGATTATTTTATGGTGGGGATTTAGGCTTGCCTGTGAGATTGCTGTATTTACCAAGTGGGAACATAAAGATTGGTGGCTTCTTCATTTCTATTGAATTACTCACTCACTTTTTTTATTACAGGTTAAAGAAGCAAAAGAGAAGGCTATGACGGCACTTGGTCCGTACCGCTTGTCTACTTCACATGATCATACTGTGGAGGGAATTGGGCATTTTCAAAAGGCCACTGAACCTGCACCACAAACTTTTGTCTCTCTCTTGGAGTTTGTGAGTGAAATTTACCAGGTTAGTGCCTTTTCTTGCTAATTTTGGAGTCCCTAGGGCATTATCACTACGAAAAGGTATGAACGGTGATACCAAATTGATTTTGTATTTCAACACATAAAACTCTTGAATATGGAAAACAATTCAAAACTATCTTTCCATTAATAAAATACGAGTT</genome_strand>
        <mrna_strand>GGTACACCAATTTTCATCTTACTTTTTTTATTTTACAATACAAAAACCCTAAACTAGGGCTTTTCTTCCCGCCTTCTTCCTCACTCTCACTGTGTCAGTTCCGGTGAACGGAGCTGAAGAGTACACACAGATTCCGGTGAACAGAGCTGAAGAGTACACACAGATTCCGGTGAACGGAGCTGAAACCTACGCAGAGATTCCGGTGAGCGGAGATTAAAGCTGAGAGTAACAGAGAAACAATGGTCTCCCTGAAGATTTTACTATCTCTAATTGAATCTACTGTATTGAATCCCACACCTCCTACGCCATCGGAGAGGATCGAGCTGCTTCACGCCATTCGTCACTCTCTTCCATCTTTCCAGTCACTACTTTCCTATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCAAGCCCTCGGACCGAGTTCAAGTCCAGTCCAAAGAAGTGAGACTTCCAGATTCTGGCCCAATTTCACTGGATGATCAGGATGTTCAAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTAAAGTTAAGTGATGATCTACATCTTAATGAAGTAGACTCTGTTCGGTTGCTTGTTTCTGCCAATCAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGATTATTGGGACGTGAGCCATTAGAGATATTCCGCCTCGCAGCTGGACTGTGGTATACAGAGAGAAGAGATCTTATAACAGCACTTTACACACTGTTGAGG....................................................................................GCTGTTGTCCTTGATCAAGGACTGGAACCTGATCTTGTGGCAGATATTCAGAGATTTTTGGACGATCTCATTAATGCTGGAGTTAGAAAGCGGTTAATCTCACTCATAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAATCGAGAAGAGCCATCTGGTTTGGGTGGGCCTAACTGTGAACGCTATATTCTTGATTCAAGAGGAGCTTTGGTGGAAAGGAGAGCTGTTGTTTCCAGGGAAAGGCTCATTCTGGCTCATTGCCTTGTCCTTTCTGTTTTGGTGGTGCGTGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTAAAGATGTGAAGGACGTCTTTTCTACTCTAAAGGATAGTGCAGCAGGGCTTAGTGGTAGCACTGACACTTTAAGCCATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACATATAGTCTTCTATTCTCCCTTGTGGTGGCTCTCATATCAGATGCATTGAGTGCAGTACCTGATAAAACATCAGTCTTGTCCCGTGATGCAGCTTTTAGGCAGGAATTTCAGGAATCT............................................................................GTAATGGTCACTGGGAATGATCCTGTTGTTGAGGGCTATTTTGATTGCTTAAGGAGTGCATGGGTTGTACATCTTATGCTAATACATGACGGGATTGATGCAAAAGATACATCAGCAACTGCTTCATCAAATAATGATATAAGGAACATCTATTCATGCTTGGAAGTTATATTCTCCAACAATGTCTTCCTGTCTTGGCTGAATAAGATCCTCCTAACTCCTGCCTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGATGAGGATATGATCTACATGTACAATGCCTATTTGCACAAGATGATAACATGCCTTTTGTCTCATCCATTGGCCAAGGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGAAGCAAAAGAGAAGGCTATGACGGCACTTGGTCCGTACCGCTTGTCTACTTCACATGATCATACTGTGGAGGGAATTGGGCATTTTCAAAAGGCCACTGAACCTGCACCACAAACTTTTGTCTCTCTCTTGGAGTTTGTGAGTGAAATTTACCAGGTTAGTGCCTTTTCTTGCTAATTTTGGAGTCCCTAGGGCATTATCACTACGAAAAGGTATGAACGGTGATACCAAATTGATTTTGTATTTCAACACATAAAACTCTTGAATATGGAAAACAATTCAAAACTATCTTTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435289" ref_strand="+" ref_description="SGN-E435289 [STM-61-E20]">
      <seq>cagtcctggagtgaacggagccagaatgatttgtaaatctaaggtattggagttgcttgaagttgtccagttcaaatctcctgatactgtgttgaaatcttcacaagcagtttcaagcgcgaagtatgggtttctggctgaagatatacttatcaatcctgctacttctgaaaaaggtggtgtttattactactcagaacgtggagaccgtttaattgatctagctgcatttcgtgacaaattatggcagaaatacaacttgtttaatccccagcatagctccttcaatactgaagttgagctaaatgaaatccgagatacaatccaacagctgttacgatggggttggaaatacaacaaaaatcttgaagaacaagcagctcagcttcatatgttaactggctggtctcaaattgttgaggtttctgcctccagcaaaatatcctctcttcccaaccgttctgaaatattatttcagttgcttgatgcctctcttggtgcttctggttctcccgactgctcattgaagatggcactgatactgacacaggttggtgtcacatgcatggccaaactacgtgatgaaagattcttacgccctagtggtttaaactctgaaactgtcacttgtcttgacatcatgatgacaaaacaattatctaatggagcatgccattctattctattcaagcttatactggcgattcttagaaacgaatcatcagaagcattngaggaggcgccatatgccttgctccttagctatatccagtactgtcaacatatgctttgatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78913" stop="82196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79213" g_stop="79255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79256" i_stop="80532" i_length="1277">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80533" g_stop="80625" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="136" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80626" i_stop="80708" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80822" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="250" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80823" i_stop="80962" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80963" g_stop="81133" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="421" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81134" i_stop="81238" i_length="105">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81239" g_stop="81294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="477" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81295" i_stop="81374" i_length="80">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.208" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81375" g_stop="81447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="550" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81546" g_stop="81736" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="742" r_length="192" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81737" i_stop="81840" i_length="104">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.323" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81841" g_stop="81896" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="798" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E435289" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79213" e_stop="79255"/>
          <exon e_start="80533" e_stop="80625"/>
          <exon e_start="80709" e_stop="80822"/>
          <exon e_start="80963" e_stop="81133"/>
          <exon e_start="81239" e_stop="81294"/>
          <exon e_start="81375" e_stop="81447"/>
          <exon e_start="81546" e_stop="81736"/>
          <exon e_start="81841" e_stop="81896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCTGGAGTGAACGGCGCCAGAATGATTAGTAAATCTAAGGTAAAGTTTTACCACTCACTGTGTCTTGAATATTCAGGAATATGATTACATCCTCTTGTTTTTGCACTGGTTCTCATTGTTATTAATGTCACATTCCAAACATTTTATTTCATGCTTTTGTTTCCTGTATATGCCGTGCCCTCTTGTCCCTCTCTCTGGCTGTCGTTTACTATCACTTCTCAACATTCTATTAAACAAGTCAACAAGTTATTTGCCTTTTGTTCATATGAAGTCAAGCATTTGCTCAAAATCATTGAAACTCTCTGATCTAAACTTTTATGTTTTCTTTTATTTTCATATTTAACTTGCTCTCAACATTTCTTCCACTTAAGTGGTGACATTACCCAGATTGTTCCTGCCATAATCCGTTATCTATGTTCAATGTGTTCTTAACTTCTGCCCCACCTCCATTGTGTTTTTTTTGGGATAAAGGTACCAATTTATAACAGAGAACTATTACCTACAATCCTCCTAGATTCTCCAAAAAAGAAGTAATGTCCTCCACTTCTTTGGGGAGGACAAGATTACACCAAAAATATAAGGTTACTAGATGGTTCAACTTCCAACATTGGAGAGGTTCGCTCTTGTTCTCAGAGCATCTTAGGTTCCTTTCCTTCCAAATTGTCCACCAGATGCATGTAGGGACAATCTTCCATCTCTCCTTGTGACATGATTTTTTGCCTTCTTTGTTCCAACTTGCTAGAACTTCTGATGTTTCTCTTGGCATAACCCAACTAATTCCTCCAAAATTAAAGAACATCTGCCACAGTGTCTCTGTCACCCTGCACTGTATGAAGAGATGGTTTGTTGTCTCTATTTCAAGTTCACAAAAAAAGCATCTGGATCATAACCGTCTACCCCACCTCCATTATGTATATCTTAATCATTTTTCCACTTCTTCATCTGCACATTATGAGGTATCTCCCAAACCACTTAGAGCAACCTTCCCTAAAGTTTCTCCCTTTTGTTGTTGATGTATGTAGTAGGAGAGCACACTTCTATTATTTATGTCTTCACTATCGAAAGTCAATATTCAACCAACAAAAGTATAAAATGTACCAAACTTAATACTGGTATTATCTTGTGATCCCATTAACCAAATGAGCCCTTATTGTGGTATTCCTTTCTTGTCACTTGTGTTCTCTTCATAACATTTCAATTTATTTTAAATAATTTTTTGGTAGATCCTTTTTTTTGTTTTTGGATAAGTAAGATAAGTATCTTCTATTTTCATTAATAAAGAAAGTAAGAACAACTTCCATTGCATTTATGTGTAGGTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTGGTAGGAACCTTGTTAGGTTTGGAGCAGTTTTTCATTGCTATTATCTTTGGGGAGTACTCTTATCATTCTCTGGCATTCTGCAGGCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAGGTACAGTATTTCTTTGCAATCCAGTTTTTCCTTTCTTTTGTCCCTTATTTATTTATAAGATCCCTTTAGCCACCTGAGATTGTTTTTATCTATTGGAGGTGCTGCATAACCTTTCTTTTAAAATTTTATCCCTCTTTCAGAAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAGGTCACATTTCTTTTCCTTCGTCACTTGGTTCTCAATTCGTCGGTATGCTTTGCTGTAAGTACGTGCGTTGGGCTAACATATTCTGTTATGCAAATTTTCTTCTAGGTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCAGTGAGTGACCATTTTCGTTTTTTTTCTTTCTGTTTTGTTGCCAATCTTTGATCCCGTCTCACTTTTTCTTCCATGCATAGGTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAGGTTATACATTTCTCATCTTCTTAGTTTGTTGAAGTGGTTACACCATGTATTGCAGTTACCTCGATTATATTCTTATTTTGCTTAAGATATTTGTGTAGGTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCGTGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATT-GAGGAGGCGGTATAGTGTTTCATATTTGCTTAATCTTTGATTAATCTATTCCTTTAGCTTTGTTGCAGAGAAAAGGAAGTCTCTGACTTTTGCTGTTTGTTTCTTGACTACAGCCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGC-TTGATCCTG</genome_strand>
        <mrna_strand>CAGTCCTGGAGTGAACGGAGCCAGAATGATTTGTAAATCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTG...................................................................................GCTGAAGATATACTTATCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGCAG............................................................................................................................................AAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAATACTGAAGTTGAGCTAAATGAAATCCGAGATACAATCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCTTGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAG.........................................................................................................GTTTCTGCCTCCAGCAAAATATCCTCTCTTCCCAACCGTTCTGAAATATTATTTCA................................................................................GTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAG..................................................................................................GTTGGTGTCACATGCATGGCCAAACTACGTGATGAAAGATTCTTACGCCCTAGTGGTTTAAACTCTGAAACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCATGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTTAGAAACGAATCATCAGAAGCATTNGAGGAGGCG........................................................................................................CC-ATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTTGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465572" ref_strand="+" ref_description="SGN-E465572 [cPRO-21-F3]">
      <seq>cagtcctggagtgaacggagccagaatgatttgtaaatctaaggtattggagttgcttgaagttgtccagttcaaatctcctgatactgtgttgaaatcttcacaagcagtttcaagcgcgaagtatgggtttctggctgaagatatacttatcaatcctgctacttctgaaaaaggtggtgtttattactactcagaacgtggagaccgtttaattgatctagctgcatttcgtgacaaattatggcagaaatacaacttgtttaatccccagcatagctccttcaatactgaagttgagctaaatgaaatccgagatacaatccaacagctgttacgatggggttggaaatacaacaaaaatcttgaagaacaagcagctcagcttcatatgttaactggctggtctcaaattgttgaggtttctgcctccagcaaaatatcctctcttcccaaccgttctgaaatattatttcagttgcttgatgcctctcttggtgcttctggttctcccgactgctcattgaagatggcactgatactgacacaggttggtgtcacatgcatggccaaactacgtgatgaaagattcttacgccctagtggtttaaactctgaaactgtcacttgtcttgacatcatgatgacaaaacaattatctaatggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78913" stop="81964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79213" g_stop="79255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79256" i_stop="80532" i_length="1277">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80533" g_stop="80625" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="136" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80626" i_stop="80708" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80822" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="250" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80823" i_stop="80962" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80963" g_stop="81133" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="421" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81134" i_stop="81238" i_length="105">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81239" g_stop="81294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="477" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81295" i_stop="81374" i_length="80">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.208" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81375" g_stop="81447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="550" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81546" g_stop="81664" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="669" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E465572" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79213" e_stop="79255"/>
          <exon e_start="80533" e_stop="80625"/>
          <exon e_start="80709" e_stop="80822"/>
          <exon e_start="80963" e_stop="81133"/>
          <exon e_start="81239" e_stop="81294"/>
          <exon e_start="81375" e_stop="81447"/>
          <exon e_start="81546" e_stop="81664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCTGGAGTGAACGGCGCCAGAATGATTAGTAAATCTAAGGTAAAGTTTTACCACTCACTGTGTCTTGAATATTCAGGAATATGATTACATCCTCTTGTTTTTGCACTGGTTCTCATTGTTATTAATGTCACATTCCAAACATTTTATTTCATGCTTTTGTTTCCTGTATATGCCGTGCCCTCTTGTCCCTCTCTCTGGCTGTCGTTTACTATCACTTCTCAACATTCTATTAAACAAGTCAACAAGTTATTTGCCTTTTGTTCATATGAAGTCAAGCATTTGCTCAAAATCATTGAAACTCTCTGATCTAAACTTTTATGTTTTCTTTTATTTTCATATTTAACTTGCTCTCAACATTTCTTCCACTTAAGTGGTGACATTACCCAGATTGTTCCTGCCATAATCCGTTATCTATGTTCAATGTGTTCTTAACTTCTGCCCCACCTCCATTGTGTTTTTTTTGGGATAAAGGTACCAATTTATAACAGAGAACTATTACCTACAATCCTCCTAGATTCTCCAAAAAAGAAGTAATGTCCTCCACTTCTTTGGGGAGGACAAGATTACACCAAAAATATAAGGTTACTAGATGGTTCAACTTCCAACATTGGAGAGGTTCGCTCTTGTTCTCAGAGCATCTTAGGTTCCTTTCCTTCCAAATTGTCCACCAGATGCATGTAGGGACAATCTTCCATCTCTCCTTGTGACATGATTTTTTGCCTTCTTTGTTCCAACTTGCTAGAACTTCTGATGTTTCTCTTGGCATAACCCAACTAATTCCTCCAAAATTAAAGAACATCTGCCACAGTGTCTCTGTCACCCTGCACTGTATGAAGAGATGGTTTGTTGTCTCTATTTCAAGTTCACAAAAAAAGCATCTGGATCATAACCGTCTACCCCACCTCCATTATGTATATCTTAATCATTTTTCCACTTCTTCATCTGCACATTATGAGGTATCTCCCAAACCACTTAGAGCAACCTTCCCTAAAGTTTCTCCCTTTTGTTGTTGATGTATGTAGTAGGAGAGCACACTTCTATTATTTATGTCTTCACTATCGAAAGTCAATATTCAACCAACAAAAGTATAAAATGTACCAAACTTAATACTGGTATTATCTTGTGATCCCATTAACCAAATGAGCCCTTATTGTGGTATTCCTTTCTTGTCACTTGTGTTCTCTTCATAACATTTCAATTTATTTTAAATAATTTTTTGGTAGATCCTTTTTTTTGTTTTTGGATAAGTAAGATAAGTATCTTCTATTTTCATTAATAAAGAAAGTAAGAACAACTTCCATTGCATTTATGTGTAGGTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTGGTAGGAACCTTGTTAGGTTTGGAGCAGTTTTTCATTGCTATTATCTTTGGGGAGTACTCTTATCATTCTCTGGCATTCTGCAGGCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAGGTACAGTATTTCTTTGCAATCCAGTTTTTCCTTTCTTTTGTCCCTTATTTATTTATAAGATCCCTTTAGCCACCTGAGATTGTTTTTATCTATTGGAGGTGCTGCATAACCTTTCTTTTAAAATTTTATCCCTCTTTCAGAAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAGGTCACATTTCTTTTCCTTCGTCACTTGGTTCTCAATTCGTCGGTATGCTTTGCTGTAAGTACGTGCGTTGGGCTAACATATTCTGTTATGCAAATTTTCTTCTAGGTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCAGTGAGTGACCATTTTCGTTTTTTTTCTTTCTGTTTTGTTGCCAATCTTTGATCCCGTCTCACTTTTTCTTCCATGCATAGGTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAGGTTATACATTTCTCATCTTCTTAGTTTGTTGAAGTGGTTACACCATGTATTGCAGTTACCTCGATTATATTCTTATTTTGCTTAAGATATTTGTGTAGGTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGC</genome_strand>
        <mrna_strand>CAGTCCTGGAGTGAACGGAGCCAGAATGATTTGTAAATCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTG...................................................................................GCTGAAGATATACTTATCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGCAG............................................................................................................................................AAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAATACTGAAGTTGAGCTAAATGAAATCCGAGATACAATCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCTTGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAG.........................................................................................................GTTTCTGCCTCCAGCAAAATATCCTCTCTTCCCAACCGTTCTGAAATATTATTTCA................................................................................GTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAG..................................................................................................GTTGGTGTCACATGCATGGCCAAACTACGTGATGAAAGATTCTTACGCCCTAGTGGTTTAAACTCTGAAACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543697" ref_strand="+" ref_description="SGN-E543697 [TUS-65-K9]">
      <seq>gaacggcgccagaatgattagtaaatctaaggtattggagttgcttgaagttgtccagttcaaatctcctgatactgtgttgaaatcttcacaagcagtttcaagcgcgaagtatgggtttctggctgaagatatacttaccaatcctgctacttctgaaaaaggtggtgtttattactactcagaacgtggagaccgtttaattgatctagctgcatttcgtgacaaattatgggagaaatacaacttgtttaatccccagcatagctccttcagcactgaagttgagctaaatgaaatccgagatacagtccaacagctgttacgatggggttggaaatacaacaaaaatcatgaagaacaagcagctcagcttcatatgttaactggctggtctcaaattgttgaggtctctgcctctagcaaaatttcctctcttcccaaccgttctgaaatattatttcagttgcttgatgcctctcttggtgcttctggttctcccgactgctcattgaagatggcactgatactgacacaggttggtgtcacatgcatcgccaaactacgtgatgaaagatttttatgccctagtggtttaaactctgatactgtcacttgtcttgacatcatgatgacaaaacaattatctaatggagcatgccattctattctattcaagcttatactggcgattctcagaaacgaatcatcagaagcattgaggaggcgccaatatgccttgctccttagctatatccagtactgtcaacatatgcttgatcctgatcttcctaccacagtaatgcagttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78925" stop="82225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79225" g_stop="79255" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79256" i_stop="80532" i_length="1277">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80533" g_stop="80625" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="124" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80626" i_stop="80708" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80822" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="238" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80823" i_stop="80962" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80963" g_stop="81133" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="409" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81134" i_stop="81238" i_length="105">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81239" g_stop="81294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="465" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81295" i_stop="81374" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.208" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81375" g_stop="81447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="538" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81546" g_stop="81736" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="729" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81737" i_stop="81840" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.323" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81841" g_stop="81925" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="814" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E543697" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79225" e_stop="79255"/>
          <exon e_start="80533" e_stop="80625"/>
          <exon e_start="80709" e_stop="80822"/>
          <exon e_start="80963" e_stop="81133"/>
          <exon e_start="81239" e_stop="81294"/>
          <exon e_start="81375" e_stop="81447"/>
          <exon e_start="81546" e_stop="81736"/>
          <exon e_start="81841" e_stop="81925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGCGCCAGAATGATTAGTAAATCTAAGGTAAAGTTTTACCACTCACTGTGTCTTGAATATTCAGGAATATGATTACATCCTCTTGTTTTTGCACTGGTTCTCATTGTTATTAATGTCACATTCCAAACATTTTATTTCATGCTTTTGTTTCCTGTATATGCCGTGCCCTCTTGTCCCTCTCTCTGGCTGTCGTTTACTATCACTTCTCAACATTCTATTAAACAAGTCAACAAGTTATTTGCCTTTTGTTCATATGAAGTCAAGCATTTGCTCAAAATCATTGAAACTCTCTGATCTAAACTTTTATGTTTTCTTTTATTTTCATATTTAACTTGCTCTCAACATTTCTTCCACTTAAGTGGTGACATTACCCAGATTGTTCCTGCCATAATCCGTTATCTATGTTCAATGTGTTCTTAACTTCTGCCCCACCTCCATTGTGTTTTTTTTGGGATAAAGGTACCAATTTATAACAGAGAACTATTACCTACAATCCTCCTAGATTCTCCAAAAAAGAAGTAATGTCCTCCACTTCTTTGGGGAGGACAAGATTACACCAAAAATATAAGGTTACTAGATGGTTCAACTTCCAACATTGGAGAGGTTCGCTCTTGTTCTCAGAGCATCTTAGGTTCCTTTCCTTCCAAATTGTCCACCAGATGCATGTAGGGACAATCTTCCATCTCTCCTTGTGACATGATTTTTTGCCTTCTTTGTTCCAACTTGCTAGAACTTCTGATGTTTCTCTTGGCATAACCCAACTAATTCCTCCAAAATTAAAGAACATCTGCCACAGTGTCTCTGTCACCCTGCACTGTATGAAGAGATGGTTTGTTGTCTCTATTTCAAGTTCACAAAAAAAGCATCTGGATCATAACCGTCTACCCCACCTCCATTATGTATATCTTAATCATTTTTCCACTTCTTCATCTGCACATTATGAGGTATCTCCCAAACCACTTAGAGCAACCTTCCCTAAAGTTTCTCCCTTTTGTTGTTGATGTATGTAGTAGGAGAGCACACTTCTATTATTTATGTCTTCACTATCGAAAGTCAATATTCAACCAACAAAAGTATAAAATGTACCAAACTTAATACTGGTATTATCTTGTGATCCCATTAACCAAATGAGCCCTTATTGTGGTATTCCTTTCTTGTCACTTGTGTTCTCTTCATAACATTTCAATTTATTTTAAATAATTTTTTGGTAGATCCTTTTTTTTGTTTTTGGATAAGTAAGATAAGTATCTTCTATTTTCATTAATAAAGAAAGTAAGAACAACTTCCATTGCATTTATGTGTAGGTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTGGTAGGAACCTTGTTAGGTTTGGAGCAGTTTTTCATTGCTATTATCTTTGGGGAGTACTCTTATCATTCTCTGGCATTCTGCAGGCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAGGTACAGTATTTCTTTGCAATCCAGTTTTTCCTTTCTTTTGTCCCTTATTTATTTATAAGATCCCTTTAGCCACCTGAGATTGTTTTTATCTATTGGAGGTGCTGCATAACCTTTCTTTTAAAATTTTATCCCTCTTTCAGAAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAGGTCACATTTCTTTTCCTTCGTCACTTGGTTCTCAATTCGTCGGTATGCTTTGCTGTAAGTACGTGCGTTGGGCTAACATATTCTGTTATGCAAATTTTCTTCTAGGTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCAGTGAGTGACCATTTTCGTTTTTTTTCTTTCTGTTTTGTTGCCAATCTTTGATCCCGTCTCACTTTTTCTTCCATGCATAGGTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAGGTTATACATTTCTCATCTTCTTAGTTTGTTGAAGTGGTTACACCATGTATTGCAGTTACCTCGATTATATTCTTATTTTGCTTAAGATATTTGTGTAGGTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCGTGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATTGAGGAGGCGGTATAGTGTTTCATATTTGCTTAATCTTTGATTAATCTATTCCTTTAGCTTTGTTGCAGAGAAAAGGAAGTCTCTGACTTTTGCTGTTTGTTTCTTGACTACAGCCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTGATCCTGATCTTCCTACCACAGTAATGCAGTTATTG</genome_strand>
        <mrna_strand>GAACGGCGCCAGAATGATTAGTAAATCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTG...................................................................................GCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAG............................................................................................................................................AAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAG.........................................................................................................GTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCA................................................................................GTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAG..................................................................................................GTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCATGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATTGAGGAGGCG........................................................................................................CCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTGATCCTGATCTTCCTACCACAGTAATGCAGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304469" ref_strand="+" ref_description="SGN-E304469 [cLEX-12-F16]">
      <seq>aacggcgccagaatgattagtaaatctaacgtattggagttgcttgaagttgtccagttcaaatctcctgatactgtgttgaaatcttcacaagcagtttcaagcgcgaagtatgggtttctggctgaagatatacttaccaatcctgctacttctgaaaaaggtggtgtttattactactcagaacgtggagaccgcttaattgatctagctgcatttcgtgacaaattatgggagaaatacaacttgtttaatccccagcatagctccttcagcactgaagttgagctaaatgaaatccgagatacagtccaacagctgttacgatggggttggaaatacaacacaaatcatgaagaacaagccgctcagcttcatatgttaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78926" stop="81413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79226" g_stop="79255" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79256" i_stop="80532" i_length="1277">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80533" g_stop="80625" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="123" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80626" i_stop="80708" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80822" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="237" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80823" i_stop="80962" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80963" g_stop="81113" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="388" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E304469" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79226" e_stop="79255"/>
          <exon e_start="80533" e_stop="80625"/>
          <exon e_start="80709" e_stop="80822"/>
          <exon e_start="80963" e_stop="81113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCGCCAGAATGATTAGTAAATCTAAGGTAAAGTTTTACCACTCACTGTGTCTTGAATATTCAGGAATATGATTACATCCTCTTGTTTTTGCACTGGTTCTCATTGTTATTAATGTCACATTCCAAACATTTTATTTCATGCTTTTGTTTCCTGTATATGCCGTGCCCTCTTGTCCCTCTCTCTGGCTGTCGTTTACTATCACTTCTCAACATTCTATTAAACAAGTCAACAAGTTATTTGCCTTTTGTTCATATGAAGTCAAGCATTTGCTCAAAATCATTGAAACTCTCTGATCTAAACTTTTATGTTTTCTTTTATTTTCATATTTAACTTGCTCTCAACATTTCTTCCACTTAAGTGGTGACATTACCCAGATTGTTCCTGCCATAATCCGTTATCTATGTTCAATGTGTTCTTAACTTCTGCCCCACCTCCATTGTGTTTTTTTTGGGATAAAGGTACCAATTTATAACAGAGAACTATTACCTACAATCCTCCTAGATTCTCCAAAAAAGAAGTAATGTCCTCCACTTCTTTGGGGAGGACAAGATTACACCAAAAATATAAGGTTACTAGATGGTTCAACTTCCAACATTGGAGAGGTTCGCTCTTGTTCTCAGAGCATCTTAGGTTCCTTTCCTTCCAAATTGTCCACCAGATGCATGTAGGGACAATCTTCCATCTCTCCTTGTGACATGATTTTTTGCCTTCTTTGTTCCAACTTGCTAGAACTTCTGATGTTTCTCTTGGCATAACCCAACTAATTCCTCCAAAATTAAAGAACATCTGCCACAGTGTCTCTGTCACCCTGCACTGTATGAAGAGATGGTTTGTTGTCTCTATTTCAAGTTCACAAAAAAAGCATCTGGATCATAACCGTCTACCCCACCTCCATTATGTATATCTTAATCATTTTTCCACTTCTTCATCTGCACATTATGAGGTATCTCCCAAACCACTTAGAGCAACCTTCCCTAAAGTTTCTCCCTTTTGTTGTTGATGTATGTAGTAGGAGAGCACACTTCTATTATTTATGTCTTCACTATCGAAAGTCAATATTCAACCAACAAAAGTATAAAATGTACCAAACTTAATACTGGTATTATCTTGTGATCCCATTAACCAAATGAGCCCTTATTGTGGTATTCCTTTCTTGTCACTTGTGTTCTCTTCATAACATTTCAATTTATTTTAAATAATTTTTTGGTAGATCCTTTTTTTTGTTTTTGGATAAGTAAGATAAGTATCTTCTATTTTCATTAATAAAGAAAGTAAGAACAACTTCCATTGCATTTATGTGTAGGTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTGGTAGGAACCTTGTTAGGTTTGGAGCAGTTTTTCATTGCTATTATCTTTGGGGAGTACTCTTATCATTCTCTGGCATTCTGCAGGCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAGGTACAGTATTTCTTTGCAATCCAGTTTTTCCTTTCTTTTGTCCCTTATTTATTTATAAGATCCCTTTAGCCACCTGAGATTGTTTTTATCTATTGGAGGTGCTGCATAACCTTTCTTTTAAAATTTTATCCCTCTTTCAGAAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTG</genome_strand>
        <mrna_strand>AACGGCGCCAGAATGATTAGTAAATCTAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTG...................................................................................GCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGCTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAG............................................................................................................................................AAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACACAAATCATGAAGAACAAGCCGCTCAGCTTCATATGTTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569695" ref_strand="+" ref_description="SGN-E569695 [14168]">
      <seq>cgatggggttggaaatacaacaaaaatcttgaagaacaagcagctcagcttcatatgttaactggctgggtctcaaattgttgaggtttctgcctccagcaaaatatcctctcttcccaaccgttctgaaatattatttcagttgcttgatgcttctcttggtgcttctggttctcccgactgctcattgaagatggcactgatactgacacaggttggtgtcacatgcatgggcaaactacgtgatgaaagattcttatgccctagtggtttaaacctctgatactgtcacttgtcttggacatcatgatgacaaagcaattatctaagtggagcatgccattctaattctattcaagcttatactggcgattcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="80750" stop="82006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81050" g_stop="81133" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81134" i_stop="81238" i_length="105">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.848" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81239" g_stop="81294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="141" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81295" i_stop="81374" i_length="80">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.208" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81375" g_stop="81447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="214" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81546" g_stop="81706" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="379" r_length="165" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E569695" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81050" e_stop="81133"/>
          <exon e_start="81239" e_stop="81294"/>
          <exon e_start="81375" e_stop="81447"/>
          <exon e_start="81546" e_stop="81706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCT-GGTCTCAAATTGTTGAGGTCACATTTCTTTTCCTTCGTCACTTGGTTCTCAATTCGTCGGTATGCTTTGCTGTAAGTACGTGCGTTGGGCTAACATATTCTGTTATGCAAATTTTCTTCTAGGTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCAGTGAGTGACCATTTTCGTTTTTTTTCTTTCTGTTTTGTTGCCAATCTTTGATCCCGTCTCACTTTTTCTTCCATGCATAGGTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAGGTTATACATTTCTCATCTTCTTAGTTTGTTGAAGTGGTTACACCATGTATTGCAGTTACCTCGATTATATTCTTATTTTGCTTAAGATATTTGTGTAGGTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAA-CTCTGATACTGTCACTTGTCTT-GACATCATGATGACAAAACAATTATCTAA-TGGAGCGTGCCATTCT-ATTCTATTCAAGCTTATACTGGCGATTCTCAG</genome_strand>
        <mrna_strand>CGATGGGGTTGGAAATACAACAAAAATCTTGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGGTCTCAAATTGTTGAG.........................................................................................................GTTTCTGCCTCCAGCAAAATATCCTCTCTTCCCAACCGTTCTGAAATATTATTTCA................................................................................GTTGCTTGATGCTTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAG..................................................................................................GTTGGTGTCACATGCATGGGCAAACTACGTGATGAAAGATTCTTATGCCCTAGTGGTTTAAACCTCTGATACTGTCACTTGTCTTGGACATCATGATGACAAAGCAATTATCTAAGTGGAGCATGCCATTCTAATTCTATTCAAGCTTATACTGGCGATTCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276580" ref_strand="+" ref_description="SGN-E276580 [cLEN-17-L11]">
      <seq>ctgacacaggttggtgtcacatgcatcgccaaactacgtgatgaaagatttttatgccctagtggtttaaactctgatactgtcacttgtcttgacatcatgatgacaaaacaattatctaatggagcatgccattctattctattcaagcttatactggcgattctcagaaacgaatcatcagaagcattgaggaggcgccaatatgccttgctccttagctatatccagtactgtcaacatatgcttgatcctgatcttcctaccacagtaatgcagttattgacaatggatgaacaggaaaatgatgatcaggatcttgaaaagattgtcaaagatcagaccgaaatggcatatgcaaatttttcaataataaggaaggaggctcaatcacttctagatctgatcataaaagatgcaatccatggcagcgaatctggaaaaaccatctcgctctatgttttggatgctttaatttgcattgatcatgaaaagtttttcttgagtcaactgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="81244" stop="84214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81439" g_stop="81447" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81546" g_stop="81736" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="200" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81737" i_stop="81840" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.323" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81841" g_stop="81967" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81968" i_stop="82100" i_length="133">
            <donor d_prob="0.539" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82101" g_stop="82178" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="405" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82179" i_stop="83803" i_length="1625">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83804" g_stop="83914" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="516" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E276580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81439" e_stop="81447"/>
          <exon e_start="81546" e_stop="81736"/>
          <exon e_start="81841" e_stop="81967"/>
          <exon e_start="82101" e_stop="82178"/>
          <exon e_start="83804" e_stop="83914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACAGGTTATACATTTCTCATCTTCTTAGTTTGTTGAAGTGGTTACACCATGTATTGCAGTTACCTCGATTATATTCTTATTTTGCTTAAGATATTTGTGTAGGTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCGTGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATTGAGGAGGCGGTATAGTGTTTCATATTTGCTTAATCTTTGATTAATCTATTCCTTTAGCTTTGTTGCAGAGAAAAGGAAGTCTCTGACTTTTGCTGTTTGTTTCTTGACTACAGCCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTGATCCTGATCTTCCTACCACAGTAATGCAGTTATTGACAATGGATGAACAGGAAAATGATGATCAGGATCTTGAAAAGGTTCTAAAATCTTCGTGGGGAAACTTCCCATTGGATCTCCCTATTGTTGTATTCTTACTGGATCAATTTAACACAATGATGTAACGAGTTGTTATTCCATTCTCTCATTCTGTTCTATCTTAAATTTGAACAGATTGTCAAAGATCAGACCGAAATGGCATATGCAAATTTTTCAATAATAAGGAAGGAGGCTCAATCACTTCTAGATCTGGTGGGTAGCACATTTCAGATTGAATTCTTAATTTTGTTTGTTGTTTCTTCTGATGCTGATCTATATCGGGGATTGGGACCGGTAGTGTGAACAAGCTCGTACAGGCAGATTTAACTTCTCTCACTCATCTGCACAAGTTATTTTATTTAAAGTATACCATTATTACTCCATTTCTCTACTTCCTGTGTTTATTGTTGAAGTGTGTGACCATCTTATCTAAAATCGTTGTTAGAAAGCAGACTATTTATTATTTAATAATATTCTTAACACGTCCTCTCACTTGTGGGCCTGATTCTTTTTCATGGGCCAAGCATGTGAAAATTCTTTTTGATATGGGTGGCGGTGAGATTCGATCTTAGGACCTCTATTTGCTCTGTTACTAGTGTTGTGAAAAGCGACAAAAAGTGCGAAGCGAGGCAAGGCGCAAGCACTGCACTTTTATGCTTTGAAGTGAGGCGCTGCTAAAAGTGCGAGGGCTTCTGTAGGCAAAGCAAGAAGTGCGCTTAAAGCAAAGGCGATAAAAAGCGCTCTTAACCGTGTTAGGTTTTTTATTTTTAACTTCTGTTAATATACTTGTCTGCTGCAACTCAACATTTCCCTCTTCTTCTTCTGTGACTCAAACATCTCAACATCTGTTGCTGCAACTCAACGAGAAGTTCTTCCTCTCTTTTCTTCTTCTTCTTTGGACTCTCTTTCTGGCTTTTAACGACTACTTTTAGGGTTTCCCCCCTGTTATGCTCTGTTTTTTTTTTTACTTATTTGGTTTTGCTGTTTGCATTTGCTCAATATGTTATGATTATGAGTATTATTGACTATTTTTTATTTGCTTTTTAATTTAAGAATTGAAAGATTTGCTTAGTATGTTATTTCTATTAATTGGTTATTTATATATGCATATTTAATATTTTTTTATTTGTTGTACTAAACAATACTTTAGTAGAAAAGAGCGTGCGCTTTGCTTCACACTTCACGCTTTGGCGAAGCAAGCTCTCGTCGCTTTTTTCTGCTTCTCGCTCTCCAAAACACTGCTTGATACCAAGTTGAAGTGTCTGACCGTCTCATTTAAAAACTTAAGCTATTAGAGAGAGCACATTTTTATTAGTTCTTGGGCCTAACTCAACACACCTCCTAATGTTAAATTAGGTGTTGGACCTATTTCACACCCCAAAAGCTAAGCTCAAATGGAGGAGGATTTCCCAAGCTTTATAAGGGGTCTACCCATCTAATTGACCAACAATGTAAGACTTTTTTCTTTCTTTTAACACCTCAGCTCACCTCACACCCGATGCTTAGCATCTAGTGCGTGCGCAATTTTAATTTCGGGGGTCCAATATTGGGTGAGACGGGTCCTGCCTTGATATCAAGTTGATGTGTGACCATCTCATATAAAAATTTAATTTGTTAAAGAGAGCACTTTTGTTAATTAATTATATTCTCAACAATTATCATAATTCATCTACTTTTTACTCGATGAAACTTTTAAAATTGATTTCCTGTTCCTTTTCCTCTGTATCTATCACATTATGGCTCCATATTTTCCTTTTGCATTTTGAAGTGTGTATGTATCATAATTGCTTTCTTGCTTCGCTAGCTTACCGTGCTTTTTTGTTTTATTCTAAAAACAGATCATAAAAGATGCAATCCATGGCAGCGAATCTGGAAAAACCATCTCGCTCTATGTTTTGGATGCTTTAATTTGCATTGATCATGAAAAGTTTTTCTTGAGTCAACTGCAG</genome_strand>
        <mrna_strand>CTGACACAG..................................................................................................GTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCATGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATTGAGGAGGCG........................................................................................................CCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTGATCCTGATCTTCCTACCACAGTAATGCAGTTATTGACAATGGATGAACAGGAAAATGATGATCAGGATCTTGAAAAG.....................................................................................................................................ATTGTCAAAGATCAGACCGAAATGGCATATGCAAATTTTTCAATAATAAGGAAGGAGGCTCAATCACTTCTAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAAAAGATGCAATCCATGGCAGCGAATCTGGAAAAACCATCTCGCTCTATGTTTTGGATGCTTTAATTTGCATTGATCATGAAAAGTTTTTCTTGAGTCAACTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242457" ref_strand="+" ref_description="SGN-E242457 [cLED-30-N2]">
      <seq>gttagagtcaatgcagcgtgtctgcactcttgaagcggaacttgctcttcttctgagaattagccacaagtatggtaaatctggggcccaggtgcttttttcaatgggtgcatatgagcacatatctgcctgtaaggcactaaatatgcaattgaagggaagctaccggcgcatggatggcaaatttggaagagaactgtcagttgatgttgataaacagcgaatgataatagctccaatcttgagattggtgttttcacttacttcattggttgatgcatctgaattttttgaggttaaaaacaaagttgtacgtgaagtcattgaatttgtaagaagtcatcaattactttttgatcaaatcctacgagaagatctttctgatgctgatgtcttgacaatggaacaaataaatttggttgttggcatacttacgaagatttggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccagactctnttattacaaaccaatctatggattttctggaggaacgtcggaaggcagaaatgaatgcatctcgtctttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84913" stop="86847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85213" g_stop="85369" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85370" i_stop="85442" i_length="73">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85443" g_stop="85580" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="295" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85581" i_stop="85952" i_length="372">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85953" g_stop="86096" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="562" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86506" g_stop="86547" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="604" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E242457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85213" e_stop="85369"/>
          <exon e_start="85443" e_stop="85580"/>
          <exon e_start="85953" e_stop="86096"/>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGTCAATGCAGCGTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAGGTATTTTTTCCTCTATTCATGTGATTTAGTTTGCAATATCCTCTTTGATTAAATTGTTACAATCTTTTACCAGGGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAGGTGTGCTTCATTTCTTCATTCGAATGCAGTATAATGTTGTAAAGACAATATCAACAACTTTTACTTTAACATGAAATATTTTTAATTTCAAGAAAAATGTTGTGAAGACATGAAAAATTATTTCATTTTAAAGTCAAAAAAGTTTTTGATACCTTATGGTGCTTAAAATTCTTGTTTCTGACAAATAATCTTTTGTAGAAAGAAACAAAGAGTTATCCTTAATGGTTGGTTCAATTAATTATATAGTTCTAGAATATGAAATATCTGAATGAACTTCTGGCAATTTGGCACTTATTCAAGAGGTTTACCATATTTTAAAAAAGTCCTCTTTCTCTTGCGATCTATCCTTTTAATTAAGTGGGTGACTAGCAGGTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAGGTACGTTTCCGTACAGTTTTTTTGCATACTGTCTTTTAGGTGGATTTCAATTCCATTGATGGTTATATTACTGATGATATTTTAGCCATTTAAATAGCCAGTTGCTATTCTTGCCCCTATAATTAACAAATTTTTTTAACTTACTTTTGAACTGTATTTCTGTGTAGATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTT</genome_strand>
        <mrna_strand>GTTAGAGTCAATGCAGCGTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAG.........................................................................GGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAG.......................................................................................................................................................................ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTNTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254152" ref_strand="+" ref_description="SGN-E254152 [cLEG-34-C10]">
      <seq>gtgtctgcactcttgaagcggaacttgctcttcttctgagaattagccacaagtatggtaaatctggggcccaggtgcttttttcaatgggtgcatatgagcacatatctgcctgtaaggcactaaatatgcaattgaagggaagctaccggcgcatggatggcaaatttggaagagaactgtcagttgatgttgataaacagcgaatgataatagctccaatcttgagattggtgttttcacttacttcattggttgatgcatctgaattttttgaggttaaaaacaaagttgtacgtgaagtcattgaatttgtaagaagtcatcaattactttttgatcaaatcctacgagaagatctttctgatgctgatgtcttgacaatggaacaaataaatttggttgttggcatacttacgaagatttggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccagactcttttattacaaaccaatctatggattttctggaggaacgtcggaaggcagaaatgaatgcatctcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84930" stop="86841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85230" g_stop="85369" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85370" i_stop="85442" i_length="73">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85443" g_stop="85580" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="278" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85581" i_stop="85952" i_length="372">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85953" g_stop="86096" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="422" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="545" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86506" g_stop="86541" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="581" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E254152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85230" e_stop="85369"/>
          <exon e_start="85443" e_stop="85580"/>
          <exon e_start="85953" e_stop="86096"/>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAGGTATTTTTTCCTCTATTCATGTGATTTAGTTTGCAATATCCTCTTTGATTAAATTGTTACAATCTTTTACCAGGGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAGGTGTGCTTCATTTCTTCATTCGAATGCAGTATAATGTTGTAAAGACAATATCAACAACTTTTACTTTAACATGAAATATTTTTAATTTCAAGAAAAATGTTGTGAAGACATGAAAAATTATTTCATTTTAAAGTCAAAAAAGTTTTTGATACCTTATGGTGCTTAAAATTCTTGTTTCTGACAAATAATCTTTTGTAGAAAGAAACAAAGAGTTATCCTTAATGGTTGGTTCAATTAATTATATAGTTCTAGAATATGAAATATCTGAATGAACTTCTGGCAATTTGGCACTTATTCAAGAGGTTTACCATATTTTAAAAAAGTCCTCTTTCTCTTGCGATCTATCCTTTTAATTAAGTGGGTGACTAGCAGGTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAGGTACGTTTCCGTACAGTTTTTTTGCATACTGTCTTTTAGGTGGATTTCAATTCCATTGATGGTTATATTACTGATGATATTTTAGCCATTTAAATAGCCAGTTGCTATTCTTGCCCCTATAATTAACAAATTTTTTTAACTTACTTTTGAACTGTATTTCTGTGTAGATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTT</genome_strand>
        <mrna_strand>GTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAG.........................................................................GGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAG.......................................................................................................................................................................ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257172" ref_strand="+" ref_description="SGN-E257172 [cLEG-46-H13]">
      <seq>gtgtctgcactcttgaagcggaacttgctcttcttctgagaattagccacaagtatggtaaatctggggcccaggtgcttttttcaatgggtgcatatgagcacatatctgcctgtaaggcactaaatatgcaattgaagggaagctaccggcgcatggatggcaaatttggaagagaactgtcagttgatgttgataaacagcgaatgataatagctccaatcttgagattggtgttttcacttacttcattggttgatgcatctgaattttttgaggttaaaaacaaagttgtacgtgaagtcattgaatttgtaagaagtcatcaattactttttgatcaaatcctacgaaaagatctttctgatgctgatgtcttgacaatggaacaaataaatttgggtgttggcatacttacgaagaattggccatatgaagagaccgatgaatatggttttgtttcaaggctttttgtgatgatgcgttttcttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84930" stop="86638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85230" g_stop="85369" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85370" i_stop="85442" i_length="73">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85443" g_stop="85580" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="278" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85581" i_stop="85952" i_length="372">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85953" g_stop="86096" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="422" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86264" g_stop="86338" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="497" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E257172" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85230" e_stop="85369"/>
          <exon e_start="85443" e_stop="85580"/>
          <exon e_start="85953" e_stop="86096"/>
          <exon e_start="86264" e_stop="86338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAGGTATTTTTTCCTCTATTCATGTGATTTAGTTTGCAATATCCTCTTTGATTAAATTGTTACAATCTTTTACCAGGGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAGGTGTGCTTCATTTCTTCATTCGAATGCAGTATAATGTTGTAAAGACAATATCAACAACTTTTACTTTAACATGAAATATTTTTAATTTCAAGAAAAATGTTGTGAAGACATGAAAAATTATTTCATTTTAAAGTCAAAAAAGTTTTTGATACCTTATGGTGCTTAAAATTCTTGTTTCTGACAAATAATCTTTTGTAGAAAGAAACAAAGAGTTATCCTTAATGGTTGGTTCAATTAATTATATAGTTCTAGAATATGAAATATCTGAATGAACTTCTGGCAATTTGGCACTTATTCAAGAGGTTTACCATATTTTAAAAAAGTCCTCTTTCTCTTGCGATCTATCCTTTTAATTAAGTGGGTGACTAGCAGGTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAGGTACGTTTCCGTACAGTTTTTTTGCATACTGTCTTTTAGGTGGATTTCAATTCCATTGATGGTTATATTACTGATGATATTTTAGCCATTTAAATAGCCAGTTGCTATTCTTGCCCCTATAATTAACAAATTTTTTTAACTTACTTTTGAACTGTATTTCTGTGTAGATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCT</genome_strand>
        <mrna_strand>GTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAG.........................................................................GGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAAAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGGTGTTGGCATACTTACGAAG.......................................................................................................................................................................AATTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTTCAAGGCTTTTTGTGATGATGCGTTTTCTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259336" ref_strand="+" ref_description="SGN-E259336 [cLEG-43-O7]">
      <seq>ggggcccaggtgcttttttcaatgggtgcatatgagcacatatctgcctgtaaggcactaaatatgcaattgaagggaagctaccggcgcatggatggcaaatttggaagagaactgtcagttgatgttgataaacagcgaatgataatagctccaatcttgagattggtgttttcacttacttcattggttgatgcatctgaattttttgaggttaaaaacaaagttgtacgtgaagtcattgaatttgtaagaagtcatcaattactttttgatcaaatcctacgagaagatctttctgatgctgatgtcttgacaatggaacaaataaatttggttgttggcatacttacgaagatttggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccagactcttttattacaaaccaatctatggattttctggaggaacgtcggaaggcagaaatgaatgcatctcgtctttgctttagcctgagttcttatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84995" stop="86866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85295" g_stop="85369" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85370" i_stop="85442" i_length="73">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85443" g_stop="85580" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="213" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85581" i_stop="85952" i_length="372">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85953" g_stop="86096" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="480" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86506" g_stop="86566" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="541" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E259336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85295" e_stop="85369"/>
          <exon e_start="85443" e_stop="85580"/>
          <exon e_start="85953" e_stop="86096"/>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAGGTATTTTTTCCTCTATTCATGTGATTTAGTTTGCAATATCCTCTTTGATTAAATTGTTACAATCTTTTACCAGGGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAGGTGTGCTTCATTTCTTCATTCGAATGCAGTATAATGTTGTAAAGACAATATCAACAACTTTTACTTTAACATGAAATATTTTTAATTTCAAGAAAAATGTTGTGAAGACATGAAAAATTATTTCATTTTAAAGTCAAAAAAGTTTTTGATACCTTATGGTGCTTAAAATTCTTGTTTCTGACAAATAATCTTTTGTAGAAAGAAACAAAGAGTTATCCTTAATGGTTGGTTCAATTAATTATATAGTTCTAGAATATGAAATATCTGAATGAACTTCTGGCAATTTGGCACTTATTCAAGAGGTTTACCATATTTTAAAAAAGTCCTCTTTCTCTTGCGATCTATCCTTTTAATTAAGTGGGTGACTAGCAGGTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAGGTACGTTTCCGTACAGTTTTTTTGCATACTGTCTTTTAGGTGGATTTCAATTCCATTGATGGTTATATTACTGATGATATTTTAGCCATTTAAATAGCCAGTTGCTATTCTTGCCCCTATAATTAACAAATTTTTTTAACTTACTTTTGAACTGTATTTCTGTGTAGATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCT</genome_strand>
        <mrna_strand>GGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAG.........................................................................GGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAG.......................................................................................................................................................................ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370814" ref_strand="+" ref_description="SGN-E370814 [TUS-28-P24]">
      <seq>gaagattaggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccaaactcttttattacaaaccaatctatggattttctggaggaacgtcagaaggcaaaaatgaatgcatctcgtctttgctttagcctgagttcttatctctgttttcttgttacgaagaagtctttaatattgttggtctcagatggtcgaatggactatcgcacttctgctggtcagcaacagccaacattgaatttacttggttttcttctcaactcgctgactacagcattggaaagagctactgaggacagatatttattgcttagcaagattcaagacataaatgaactttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgttcgagaacattcagacaaggagatatgtcgcgatgtttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="85960" stop="88059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86096" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="127" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86506" g_stop="86601" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="223" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86602" i_stop="86751" i_length="150">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86752" g_stop="86889" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="361" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86969" g_stop="87069" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="462" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87689" g_stop="87759" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="534" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E370814" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86096"/>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86601"/>
          <exon e_start="86752" e_stop="86889"/>
          <exon e_start="86969" e_stop="87069"/>
          <exon e_start="87689" e_stop="87759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTACGTTTCCGTACAGTTTTTTTGCATACTGTCTTTTAGGTGGATTTCAATTCCATTGATGGTTATATTACTGATGATATTTTAGCCATTTAAATAGCCAGTTGCTATTCTTGCCCCTATAATTAACAAATTTTTTTAACTTACTTTTGAACTGTATTTCTGTGTAGATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCGGTACGTCAAAATTGACTTGTTTAATTATTTTCCTGCTTATGAACTTTTAAGTCAACGGTTAGGCATTAAATGTTTATGTCCTTTTCTTGCTGGTGCCTTGATAAATATTTTTGGCATGTGTCACAATTTTGTTCACTCTATTTGGATCAGGTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAGGTGAAAGATATGTGTTTTGGCTACTGAATAAAGAATTAATATTTGATTATCTGAGCTTTAAATCTCTTCATTATCCCAGATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATG-TTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTT</genome_strand>
        <mrna_strand>GAAG.......................................................................................................................................................................ATTAGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAAACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCAGAAGGCAAAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAATATTGTTG......................................................................................................................................................GTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG...............................................................................ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTTCGAGAACATTCAGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370271" ref_strand="+" ref_description="SGN-E370271 [TUS-28-O24]">
      <seq>aggcgaagatttggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccagactcttttattacaaaccaatctatggattttctggaggaacgtcggaaggcagaaatgaatgcatctcgtctttgctttagcctgagttcttatctctgttttcttgttacgaagaagtctttaagattgccggtctcagatggtcgaatggactatcgcacttctgctggtcagcaacagccaacattgaatttacttggttttcttctcaactcgctgactacagcattggaaagagctactgaggacagatatttattgcttagcaagattcaagacataaatgaactttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcgatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatattatccttgttcattttcaggacagttcttttgaatgtgacaacaaacgctactcaaaagatgacttgaaattgctatgtgggaagttattttcagctttggagaggcttgaattactaagcgaggataaaacaggtcatgaccttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="85958" stop="88754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="131" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86506" g_stop="86601" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="227" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86602" i_stop="86751" i_length="150">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86752" g_stop="86889" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="365" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86969" g_stop="87069" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="466" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="586" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="686" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88430" g_stop="88454" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="711" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E370271" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86601"/>
          <exon e_start="86752" e_stop="86889"/>
          <exon e_start="86969" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCGGTACGTCAAAATTGACTTGTTTAATTATTTTCCTGCTTATGAACTTTTAAGTCAACGGTTAGGCATTAAATGTTTATGTCCTTTTCTTGCTGGTGCCTTGATAAATATTTTTGGCATGTGTCACAATTTTGTTCACTCTATTTGGATCAGGTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAGGTGAAAGATATGTGTTTTGGCTACTGAATAAAGAATTAATATTTGATTATCTGAGCTTTAAATCTCTTCATTATCCCAGATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAG</genome_strand>
        <mrna_strand>ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCG......................................................................................................................................................GTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG...............................................................................ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAAATTGCTATGTGGGAAGTTATTTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272039" ref_strand="+" ref_description="SGN-E272039 [cLEM-8-L21]">
      <seq>aggcgaagatttggccatatgaagagaccgatgaatatggttttgttcaagggctttttgtgatgatgcgttttcttttctctcgtgagccagactcttttattacaaaccaatctatggattttctggaggaacgtcggaaggcagaaatgaatgcatctcgtctttgctttagcctgagttcttatctctgttttcttgttacgaagaagtctttaagattgccggtctcagatggtcgaatggactatcgcacttctgctggtcagcaacagccaacattgaatttacttggttttcttctcaactcgctgactacagcattggaaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="85958" stop="87158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86264" g_stop="86386" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="131" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86506" g_stop="86601" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="227" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86602" i_stop="86751" i_length="150">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86752" g_stop="86858" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="334" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E272039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86264" e_stop="86386"/>
          <exon e_start="86506" e_stop="86601"/>
          <exon e_start="86752" e_stop="86858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAGGTAATAAGAATTTTTAGGTTTAGCTTGATTGTGTATTATTAAGGCAAGATGTATACAACGGTGAAGCTTGTATGGTCATAGACCGCCTCACTTTTGTTTCCTTTTGTATGTATTATCAGGAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCGGTACGTCAAAATTGACTTGTTTAATTATTTTCCTGCTTATGAACTTTTAAGTCAACGGTTAGGCATTAAATGTTTATGTCCTTTTCTTGCTGGTGCCTTGATAAATATTTTTGGCATGTGTCACAATTTTGTTCACTCTATTTGGATCAGGTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGC</genome_strand>
        <mrna_strand>ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG.......................................................................................................................GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCG......................................................................................................................................................GTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543696" ref_strand="+" ref_description="SGN-E543696 [TUS-65-K9](-)">
      <seq>ttaagattgccggtctcagatggtcgaatggactatcgcacttctgctggtcagcaacagccaacattgaatttacttggtttcttctcaactcgctgactacagcattggaaagagctactgaggacagatatttattgcttagcaagattcaagacataaatgaactttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcgatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatattatccttgttcattttcaggacagttcttttgaatgtgacaacaaacgctactcaaaagatgacttgaatttgctatgtggaaagttaatttcagctttggagaggcttgaattactaagcgaggataaaacaggtcatgaccttaaagtatttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgaccggccatctccttcttttgttctttcataaatttttagcataggggggtatgaggaatttagttgtaatgtaattgtatatttatcttttacatagtgcttgtcctatatttttttaatcctccaatctgttgtacatattgtatatcatacttacagcctcttttgtgctttttgtgggggagttctgaatgttacagaagacagattacactagaaggctattagtagttatactcctaaaaaaaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86442" stop="89057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86590" g_stop="86601" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86602" i_stop="86751" i_length="150">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86752" g_stop="86889" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="149" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86969" g_stop="87069" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="370" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="470" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88430" g_stop="88754" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="795" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="820"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E543696" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86590" e_stop="86601"/>
          <exon e_start="86752" e_stop="86889"/>
          <exon e_start="86969" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGATTGCCGGTACGTCAAAATTGACTTGTTTAATTATTTTCCTGCTTATGAACTTTTAAGTCAACGGTTAGGCATTAAATGTTTATGTCCTTTTCTTGCTGGTGCCTTGATAAATATTTTTGGCATGTGTCACAATTTTGTTCACTCTATTTGGATCAGGTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAGGTGAAAGATATGTGTTTTGGCTACTGAATAAAGAATTAATATTTGATTATCTGAGCTTTAAATCTCTTCATTATCCCAGATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCT</genome_strand>
        <mrna_strand>TTAAGATTGCCG......................................................................................................................................................GTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGG-TTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG...............................................................................ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716200" ref_strand="+" ref_description="SGN-E716200 [FB16BF01]">
      <seq>cagcattggaaagagctactgaggacagatatttattgcttagcaagattcaagacataaatgaactttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcgatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatattatccttgttcattttcaggacagttcttttgaatgtgacaacaaacgctactcaaaagatgacttgaatttgctatgtggaaagttaatttcagctttggagaggcttgaattactaagcgaggataaaacaggtcatgaccttaaagtatttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgaccggccatctccttcttttgttctttcataaatttttagcataggggggtatgaggaatttagttgtaatgtaattgtatatttatcttttacatagtgcttgtcctatatttttttaatcctccaatctgttgtacatattgtatatcatacttacagcctcttttgtgctttttgtgggggagttctgaatgttacagaagacagattacactagaaggctattagtagttatactcctataggtcttgccccttatttataggtttttgtacttcgattatcatattattttgtgtatttactgttcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86543" stop="89127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86843" g_stop="86889" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86969" g_stop="87069" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="148" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="268" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="368" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88430" g_stop="88826" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="765" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="778"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E716200" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86843" e_stop="86889"/>
          <exon e_start="86969" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAGGTGAAAGATATGTGTTTTGGCTACTGAATAAAGAATTAATATTTGATTATCTGAGCTTTAAATCTCTTCATTATCCCAGATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTCAGA</genome_strand>
        <mrna_strand>CAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG...............................................................................ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTTTGTACTTCGATTATCATATTATTTTGTGTATTTACTGTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716852" ref_strand="+" ref_description="SGN-E716852 [FB18AH06]">
      <seq>cagcattggaaagagctactgaggacagatatttattgcttagcaagattcaagacataaatgaactttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcgatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatattatccttgttcattttcaggacagttcttttgaatgtgacaacaaacgctactcaaaagatgacttgaatttgctatgtggaaagttaatttcagctttggagaggcttgaattactaagcgaggataaaacaggtcatgaccttaaagtatttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgaccggccatctccttcttttgttctttcataaatttttagcataggggggtatgaggaatttagttgtaatgtaattgtatatttatcttttacatagtgcttgtcctatatttttttaatcctccaatctgttgtacatattgtatatcatacttacagcctcttttgtgctttttgtgggggagttctgaatgttacagaagacagattacactagaaggctattagtagttatactcctataggtcttgccccttatttataggtttttgtacttcgattatcatattattttgtgtatttactgttcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86543" stop="89127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86843" g_stop="86889" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86969" g_stop="87069" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="148" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="268" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="368" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88430" g_stop="88826" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="765" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="778"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E716852" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86843" e_stop="86889"/>
          <exon e_start="86969" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAGGTGAAAGATATGTGTTTTGGCTACTGAATAAAGAATTAATATTTGATTATCTGAGCTTTAAATCTCTTCATTATCCCAGATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTCAGA</genome_strand>
        <mrna_strand>CAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG...............................................................................ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTTTGTACTTCGATTATCATATTATTTTGTGTATTTACTGTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370270" ref_strand="+" ref_description="SGN-E370270 [TUS-28-O24](-)">
      <seq>tttcaagacaggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcgatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatattatccttgttcattttcaggacagttcttttgaatgtgacaacaaacgctactcaaaagatgacttgaatttgctatgtggaaagttaatttcagctttggagaggcttgaattactaagcgaggataaaacaggtcatgaccttaaagtatttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgaccggccatctccttcttttgttctttcataaatttttagcataggggggtatgaggaatttagttgtaatgtaattgtatatttatcttttacatagtgcttgtcctatatttttttaatcctccaatctgttgtacatattgtatatcatacttacagcctcttttgtgctttttgtgggggagttctgaatgttacagaagacagattacactagaaggctattagtagttatactcctataggtcttgccccttatttataggtttctgcacttcaattatcatattattttgtgtatttactgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86688" stop="89127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86988" g_stop="87069" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="202" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="302" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88430" g_stop="88832" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="705" r_length="403" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E370270" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86988" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTCAGAATGTCT</genome_strand>
        <mrna_strand>TTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435290" ref_strand="-" ref_description="SGN-E435290 [STM-61-E20]">
      <seq>aggaagtggatgaaatcatcaatatgtgtgttcccaagggttgtatttcgtcgtccgagaacattcagaaaaggagatatgtcgcaatgttggagatgtgccagattgttggagataggaatcaacttatgacactattgcttttactagcggaaaacgtgatgaatgttatccttgttcattttcaggacagttcttttgaatgtggcaccaaaccctactcaaaagacgacttgaatttgctatgtggaaagttaatttcagctttggagaggcttgaattactaagtgaggataaaacaggtcatgaccttaaagtgtttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgactggccatctccctctgttgttctttcctaaatttttagtatagagggtatgaagaatttggttgagttgtaatgtaattgtatattatcttttatatagtgcttgttctatatttttttaatcctccaatctgttgtacatattgtatttcatactacggccaatattgtgcaatttagctattcccatagtgtatttaaaaaaagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86697" stop="88989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86997" g_stop="87069" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87689" g_stop="87808" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="193" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.783" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87887" g_stop="87986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="293" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88430" g_stop="88689" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="555" r_length="262" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E435290" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435290" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86997" e_stop="87069"/>
          <exon e_start="87689" e_stop="87808"/>
          <exon e_start="87887" e_stop="87986"/>
          <exon e_start="88430" e_stop="88689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAGGTACATGTAGCTTCATGTAATACAATTCCAGGATAGAGTTTTGCTCGTCTAGTTATGAGATGTCTGATTTAGATCATTAAAACTAGCTGGAGGGTGGCGGGGCATTGCCACATATAGTAAAGGTTGGGTGGTCAGTTGAACACCCTTCGTCGAAAATTTATAGATAGTAAGCTTCCTATTAGTTCAACTCCGTCTGTCCAAATCGTGTTTTCTGGTCATCTCCTTTTTGAGTGCTGATACAAACGACAGTTTATTTGCAACCAGCCCAAGTGGCAGTGATGACCTCACCTAAAGAATAACTACTACGACTGTTTTACTCAAGTAATTACTTGTATCCAGACATAATGTCTCCCTGAAATTTCTTTAATATCCAAGGCCCAAAAATAGATCCGGTTTGGTGGTCAAACATAGGAAGTACACTCAATTTTTATTTCATTAACCTTTAATGCAATATGTGGATTTTGTTGACCATCACATATTAATTGATGTAGTCATATGCTTAATCTTGCAATTGTTGTGCTGACTGGATGAGCTACATTGTTTATTGGTGAATGATTATCATGCTTTAAATCCCTTTAGTATGCTAATCTGACTAATTTTCTGATTGGTTATATTCCAGGAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAGGTACCATATTTATGGCACTTCTCTTTCGTTCATGGCTATGCAAATTCTGCTTGGTTTAACTTCTACTGGGCATTGCAGTTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAGGTATGCTAACAGTAACTTTTATCTTATGATATAGTCGTAAGTTTAAGATTACCAATCCTCTCTAAGGGTGTATTTGATTGGTCAAGATGTTTTGGACAACAAGTATCTTAAAATTGAGGGAAGTGACTTCCCCAATAGTAATTGGGAGCCTAGCTCCATTGGCCCTTGTGATTACTTTTTACAACATACCCAGTAGTTGCACAGGTGGGCTCTTTGGAGGGTGAGGAGTACGCAGATCCTGTGCCTACCTTTTGGAAGGTGGGTAGGGAGGCTGTTTCTAATGGGAATTTCCGATTATAAAAAAAAGCTTGTAATATTTCTCGTTCCACCATGTTTTGCATTATGTAAATTTTTGATACCTGAATGGCCAATGCTTGTTATATTTCTCCGTTTCTGTAATTTTGGGATTTAACCTTTCATTTTAATATTTTTCTTCTTTGCAGGATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAA--T--TT-AGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTT</genome_strand>
        <mrna_strand>AGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATGTCGCAATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATGTTATCCTTGTTCATTTTCAGGACAG..............................................................................TTCTTTTGAATGTGGCACCAAACCCTACTCAAAAGACGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAACAGGTCATGACCTTAAAGTGTTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACTGGCCATCTCCCTCTGTTGTTCTTTCCTAAATTTTTAGTATA-GAGGGTATGAAGAATTTGGTTGAGTTGTAATGTAATTGTATA-TTATCTTTTATATAGTGCTTGTTCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATTTCATAC-TACGGCCAATATTGTGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229915" ref_strand="+" ref_description="SGN-E229915 [cLEL-33-M23](-)">
      <seq>taaaagtatttcgaagattagctagttctctgaaagaaatatcgattcagaagtcacctgtttgaccggccatctccttcttttgttctttcataaatttttagcataggggggtatgaggaatttagttgtaatgtaattgtatatttatcttttacatagtgcttgtcctatatttttttaatcctccaatctgttgtacatattgtatatcatacttacagcctcttttgtgctttttgtgggggagttctgaatgttacagaagacagattacactagaaggctattagtagttatactcctataggtcttgccccttatttataggtttctgcacttcaattatcatattattttgtgtatttcctgttcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88151" stop="89127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88826" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="392"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E229915" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTCAGA</genome_strand>
        <mrna_strand>TAAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTCCTGTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555108" ref_strand="+" ref_description="SGN-E555108 [cTSC-6-H10]">
      <seq>agaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttgagggttgctacccaaaacaaaaaagggttttattaaattctattgttttaaggaaagcaacatttgaaaaaattgggtcattttttatttcaaaatgattgaaattttaaatttcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccggggggggggggggggcccccccccccccccaaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96921" stop="17555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96621" g_stop="96579" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="122" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="238" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95891" g_stop="95570" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="560" r_length="322" r_score="0.860"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95569" i_stop="94830" i_length="740">
            <donor d_prob="0.000" d_score="0.44"/>
            <acceptor a_prob="0.304" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94829" g_stop="94798" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="592" r_length="32" r_score="0.344"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E555108" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96621" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95570"/>
          <exon e_start="94829" e_stop="94798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTGGTTCATATTTTTTGGATCACAATGTGAGAAGTATGAGATGTTTGGTAAGTTTTTCTCATGATCACATAAATATGGCTCTTCCATTCTCTGAGCAAGTAAACCCCCAATTTTGTCGATTTTCGTGTGCTATAGTCCATTGATTTTTAGTGATCCATAATTTCGACATCATTTTTGCTAAGGTTATAAATGAACGTTTGTTAAGACCTTAACTATAGAGTTATTTGGTCACCATGGCCAAAATGACTCATTTTAAAGGTCAAACAAGCCCCTGAAAAGTAAACCCCCTATTTTATCGATTTTCGTGTGCTATAGTCCATTGAGTTTTAGTGATCCATAATTTCGACGTCATTTTTGCTAAGGTTTTACATGAACGTTCGTTAAGATATTTTATTTGGTCATCATGGCCAAAATGACTCATTTTAAAGGTCAAACAAACCCTTGAGAAAGTAAACCTCCATTTTGTCAATTTTGTGTGCTATAATCCATGAATTTTTGGTGATCCAGAATTCCAACGTCATTTTTGTCAAAATTTTACATGGATGACCGTTAAGACCTCACATATGGAGCCAGTTTGTCACCACATGCAAAACGACTAATTTTCAAGGTAAAACAAGCACTATAGAAGGTATACCCCTCATTTTGCTGATTTTCATATGCTATATAGTCCATGGATTTTCGGTCATTCGGAATTCTGACATCATTTTTGACAAATTTTATATAAACGTCTGTTAAGACCTTAGGTATGAAGCAAGTTGGTCACCACAACTAAAAG</genome_strand>
        <mrna_strand>AGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGGGTTGCTACCCAAAACAAAAAAGGGTTTTATTAAATTCTATTGTTTTAAGGAAAGCAACATTTGAAAAAATTGGGTCATTTTTTATTTCAAAATGATTGAAATTTTAAATTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGGCCCCCCCCCCCCCCCAAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216457" ref_strand="+" ref_description="SGN-E216457 [cLEL-1-J7](-)">
      <seq>gtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaataagattgaacttttaaatttcttttaagtgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96715" stop="95321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96415" g_stop="96369" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="163" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95891" g_stop="95622" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="433" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="457"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E216457" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96415" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGAC</genome_strand>
        <mrna_strand>GTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATAAGATTGAACTTTTAAATTTCTTTTAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227211" ref_strand="+" ref_description="SGN-E227211 [cLEL-30-N6](-)">
      <seq>tcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttcttttaagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96543" stop="95321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96243" g_stop="96156" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95891" g_stop="95622" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="358" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="373"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E227211" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96243" e_stop="96156"/>
          <exon e_start="95891" e_stop="95622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGAC</genome_strand>
        <mrna_strand>TCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227713" ref_strand="+" ref_description="SGN-E227713 [cLEL-30-N6](-)">
      <seq>aaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtaggtttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttcttttaagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96541" stop="95321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96241" g_stop="96156" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95891" g_stop="95622" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="356" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="371"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E227713" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96241" e_stop="96156"/>
          <exon e_start="95891" e_stop="95622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGAC</genome_strand>
        <mrna_strand>AAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGGTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217006" ref_strand="+" ref_description="SGN-E217006 [cLEL-1-E10](-)">
      <seq>atctcctaatgatccttttcccccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtaggtttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgcgtcattttttatttcaatatccctgaaattttaaatttcttttaagtggaaaaaaaaaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96700" stop="95321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96400" g_stop="96369" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="148" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95891" g_stop="95627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="413" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="443"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E217006" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96400" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAA</genome_strand>
        <mrna_strand>ATCTCCTAATGATCCTTTTCCCCCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGGTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGCGTCATTTTTTATTTCAATATCCCTGAAATTTTAAATTTCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392289" ref_strand="+" ref_description="SGN-E392289 [TUS-35-E14](-)">
      <seq>caaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97134" stop="95334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96932" g_stop="96917" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="95" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="186" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="265" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="381" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95634" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="641" r_length="260" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="655"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E392289" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96932" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG--TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</genome_strand>
        <mrna_strand>CAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392528" ref_strand="+" ref_description="SGN-E392528 [TUS-35-C14](-)">
      <seq>cttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97103" stop="95334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96803" g_stop="96746" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="149" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="228" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="344" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95891" g_stop="95634" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="604" r_length="260" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="618"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E392528" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96803" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG--TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</genome_strand>
        <mrna_strand>CTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230480" ref_strand="+" ref_description="SGN-E230480 [cLEL-35-I21](-)">
      <seq>ttttggatcccaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgattagatgataagcatatatgggaaagcattgaaggatactgaaaaaaaagtggaaaaattgaagtctcagaaaaagtaaaaatctcattaaaaaaaagttatttcaagtttaaataaaaactttggtggaggtttttttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96558" stop="95334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96258" g_stop="96156" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95891" g_stop="95634" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="367" r_length="264" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="385"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E230480" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96258" e_stop="96156"/>
          <exon e_start="95891" e_stop="95634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTA-G-----TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</genome_strand>
        <mrna_strand>TTTTGGATCCCAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATTAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAAAGTGGAAAAATTGAAGTCTCAGAAAAAGTAAAAATCTCATTAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGGTGGAGGTTTTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230840" ref_strand="+" ref_description="SGN-E230840 [cLEL-35-I21](-)">
      <seq>ttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattccccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatacttaaaaaagagtggaaaaattgaagtctcaaaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttggtggaggtttttttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaatatgattgaaattttaaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96556" stop="95334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96256" g_stop="96156" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95891" g_stop="95634" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="365" r_length="264" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="383"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E230840" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96256" e_stop="96156"/>
          <exon e_start="95891" e_stop="95634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTA-G-----TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</genome_strand>
        <mrna_strand>TTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCCCCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTTAAAAAAGAGTGGAAAAATTGAAGTCTCAAAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGGTGGAGGTTTTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267342" ref_strand="-" ref_description="SGN-E267342 [cLEI-17-E13]">
      <seq>gcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96908" stop="17556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96608" g_stop="96579" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="109" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="225" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95891" g_stop="95640" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="475" r_length="250" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E267342" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267342" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96608" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTT</genome_strand>
        <mrna_strand>GCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG--TTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328442" ref_strand="-" ref_description="SGN-E328442 [cTOC-21-D20]">
      <seq>tgatttggaagacttgggacaatgtttggctgtgataagtacaccattaagcctgatctgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagtttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaattgtgtcattttttatttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97601" stop="95355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97302" g_stop="97228" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="162" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="332" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="411" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="527" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95891" g_stop="95654" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="766" r_length="239" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E328442" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328442" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97302" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG-TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAAT</genome_strand>
        <mrna_strand>TGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACACCATTAAGCCTGATC-TGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203383" ref_strand="+" ref_description="SGN-E203383 [cLEB-3-D14](-)">
      <seq>attggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttgaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96751" stop="95376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96587" g_stop="96579" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="88" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="204" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95891" g_stop="95677" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="419" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="438"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E203383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96587" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAA</genome_strand>
        <mrna_strand>ATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281375" ref_strand="-" ref_description="SGN-E281375 [cLEL-1-N12]">
      <seq>agagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttttgagtgttgctactcataacataagagtgttgtgttatattctattgttttaatgagagcaacatttgaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96751" stop="95376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96582" g_stop="96579" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="83" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="199" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95891" g_stop="95677" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="416" r_length="217" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="432"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E281375" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96582" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG--TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAA</genome_strand>
        <mrna_strand>AGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTGTGTTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326922" ref_strand="-" ref_description="SGN-E326922 [cTOC-18-B5]">
      <seq>agcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagtttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgagagcaacatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96909" stop="95381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96609" g_stop="96579" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="110" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="226" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95891" g_stop="95681" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="438" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E326922" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326922" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96609" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTT-TTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGA</genome_strand>
        <mrna_strand>AGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747518" ref_strand="+" ref_description="SGN-E747518 [GI|29837283]">
      <seq>acggggggatatttcatttcttgctttatctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatggcgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaagtaaacaactcaataaatcggcattttaccattcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctctgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgtcgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagcttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattaaagtctcagaagaagtaaaaatctcatgaaaaaaaaagttatttcaagtttaaataaaaaccttgttgtagtttttttttttttttgagtgttgctactcataacataagagcgttttattatattctattgttttagtgagaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="95386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="78" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="160" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="233" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="331" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="424" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="498" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="537" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="626" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="703" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="778" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="910" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="998" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="999" r_stop="1077" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1078" r_stop="1168" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1247" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1363" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="95891" g_stop="95692" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1364" r_stop="1563" r_length="200" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1564" polyA_stop="1586"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E747518" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1514</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATG-AAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGGCGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAGTAAACAACTCAATAAATCGGCATTTTACCATTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTCGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGCTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTAAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAAGTTATTTCAAGTTTAAATAAAAACCTTGTTGTAG-TTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGCGTTTTATTATATTCTATTGTTTTAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319655" ref_strand="-" ref_description="SGN-E319655 [cTOB-12-B13]">
      <seq>taaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttgagtgttgctactcataacataagagtgttttattatattctattgttttaatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96977" stop="95392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96758" g_stop="96746" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="104" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="183" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="299" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95891" g_stop="95692" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="499" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E319655" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96758" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGA</genome_strand>
        <mrna_strand>TAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289511" ref_strand="+" ref_description="SGN-E289511 [cLET-3-K17]">
      <seq>caattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttnttttttttttttgagtgttgctactcataacataagagtgctttattatattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97282" stop="95406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96982" g_stop="96917" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="145" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="236" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="315" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="431" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95706" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="616" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E289511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96982" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTA</genome_strand>
        <mrna_strand>CAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG-TTNTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGCTTTATTATATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203025" ref_strand="+" ref_description="SGN-E203025 [cLEB-1-N20]">
      <seq>gcacgaggaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgtagttttttttttttttttttgagtgttgctactcataacataagagtgttttattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97259" stop="95410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96963" g_stop="96917" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.89"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="126" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="217" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="412" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95710" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="596" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E203025" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96963" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAG--TTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATAT</genome_strand>
        <mrna_strand>GCACGAGGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711998" ref_strand="+" ref_description="SGN-E711998 [FB03CD09]">
      <seq>gctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgtcgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattaaagtctcagaagaagtaaaaatctcatgaaaaaaaaagttatttcaagtttaaataaaaactttgttgtagtttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97653" stop="95451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97353" g_stop="97228" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="214" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="293" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="384" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="463" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="579" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95891" g_stop="95751" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="721" r_length="142" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E711998" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97353" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATG-AAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>GCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTCGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTAAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325024" ref_strand="+" ref_description="SGN-E325024 [cTOC-13-K21]">
      <seq>tcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagcaaaaaaagtaaaaatctcatgaaaaaaaaggtatttcaagtttaaataaaaactttgttgtagtttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97131" stop="95451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96924" g_stop="96917" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="87" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="178" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="257" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="373" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95751" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="517" r_length="144" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E325024" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96924" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAG---AAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>TCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGCAAAAAAAGTAAAAATCTCATGAAAAAAAAGGTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687725" ref_strand="+" ref_description="SGN-E687725 [T3_tus_79_K09]">
      <seq>ccctaataatttggaaaatcttatactcaaagagggtcctgattcagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaagagtggaagaattgaagtctcagaagaagtaaaaatctcatgaaaaaaaagttatttcaagtttaaataaaaactttgttgatatttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98545" stop="95456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98247" g_stop="98202" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.89"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="121" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="253" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="341" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="420" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="511" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="590" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="706" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="95891" g_stop="95755" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="843" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E687725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98247" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTT</genome_strand>
        <mrna_strand>CCCTAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGATTCA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGATATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208631" ref_strand="+" ref_description="SGN-E208631 [cLEC-39-O15]">
      <seq>aatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggcttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagcttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgctgagatgatcagcatatatgggaaagcattgaacgatactgaaaaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97254" stop="95545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96954" g_stop="96917" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="117" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="208" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="287" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="403" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95845" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="450" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E208631" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96954" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGT</genome_strand>
        <mrna_strand>AATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGCTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGCTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGCTGAG........................................................................................................................................................................................................................................................................ATGATCAGCATATATGGGAAAGCATTGAACGATACTGAAAAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744702" ref_strand="+" ref_description="SGN-E744702 [GI|19171206]">
      <seq>ctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="95547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="49" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="131" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="204" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="469" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="508" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="597" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="674" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="749" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="881" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="969" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1048" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1049" r_stop="1139" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1140" r_stop="1218" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1219" r_stop="1334" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="95891" g_stop="95847" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1335" r_stop="1379" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1382" polyA_stop="1432"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E744702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1359</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747189" ref_strand="+" ref_description="SGN-E747189 [GI|33339153]">
      <seq>ctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaagcattgaaggatactgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="95547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="49" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="131" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="204" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="469" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="508" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="597" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="674" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="749" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="881" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="969" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1048" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1049" r_stop="1139" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1140" r_stop="1218" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1219" r_stop="1334" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="95891" g_stop="95847" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1335" r_stop="1379" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1382" polyA_stop="1432"/>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E747189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1359</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346038" ref_strand="+" ref_description="SGN-E346038 [cTOF-24-D17]">
      <seq>tttctaaggtcataatgtctcaaagcaatcaaccttggtgttttttgccatgggatttaccttattctggacaatcctgttgcgtgtgccggttgcattggaagcacctaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaagggtttggaagcatttatagaccagtccaataattggagagaataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatgggggtgttggtacatattttgggatcacaatgtcaaaagcatggtatgttgggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaactngatgagatgataagcatatatgggaaagcatngaangatactgaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97252" stop="95548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96952" g_stop="96917" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="121" r_length="84" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.87"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="215" r_length="94" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="295" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="413" r_length="118" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95891" g_stop="95848" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="457" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E346038" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96952" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAGGTCATAATGTCTCAAAGCAATCAA-CTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCAT-GGATTTA-CTTATTCTGGAC-ATCCTGTTGCGTGTG-CGGTTGCATTGGAAGCA-CTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAA-GGTTTGAAAGCATTTATAGA-CAGTCCAATAATTGGAGAG-GTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAAT-GGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTT-GGATCACAATGTCAAAAGCATGGTATGTT-GGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAG</genome_strand>
        <mrna_strand>TTTCTAAGGTCATAATGTCTCAAAGCAATCAACCTTG............................................................................................GTGTTTTTTGCCATGGGATTTACCTTATTCTGGACAATCCTGTTGCGTGTGCCGGTTGCATTGGAAGCACCTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGGTTTGGAAGCATTTATAGACCAGTCCAATAATTGGAGAGA...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGG.................................................................................................GTGTTGGTACATATTTTGGGATCACAATGTCAAAAGCATGGTATGTTGGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTNGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAGCATNGAANGATACTGAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203382" ref_strand="+" ref_description="SGN-E203382 [cLEB-3-D14]">
      <seq>gcaccagtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatgggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97604" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97310" g_stop="97228" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="171" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="250" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="341" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="420" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="536" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95891" g_stop="95870" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="558" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E203382" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97310" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGAAAG</genome_strand>
        <mrna_strand>GCACCAGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243498" ref_strand="+" ref_description="SGN-E243498 [cLED-34-B2]">
      <seq>aacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatgataagcatatatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97560" stop="95839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97260" g_stop="97228" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="121" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="200" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="291" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="370" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="486" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95891" g_stop="95873" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="505" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E243498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97260" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
          <exon e_start="95891" e_stop="95873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGGTAATAAATATCACTTTTCATTTGATAGAAATAATTTAATATGATTTTTTTTGAGTTGAAATATGCCTAAGAGTCAAGAGTCTTGTCGGAAAATAACAAGTTTTAAGGATAAAGTATGCGTTCACTCTATTTATTCGACTCGATATTTTGTTATGATACATTAGTTTCATAAAAGTACAACCATATCTTTTGAATTATAAAAGGTAATATATTAAGGACTTGTTAACATTTTTTTGTGTTTTTATTTTTTATTTTTTTTTGTAGATGATAAGCATATATGGGA</genome_strand>
        <mrna_strand>AACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG........................................................................................................................................................................................................................................................................ATGATAAGCATATATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297874" ref_strand="+" ref_description="SGN-E297874 [cLET-38-A2]">
      <seq>aaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggatgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtctttgaagaactcgatgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97641" stop="95854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97341" g_stop="97228" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="202" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="281" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="372" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="451" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="568" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E297874" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97341" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTC-TTGAAGAACTTGATGAG</genome_strand>
        <mrna_strand>AAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGATGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTTGAAGAACTCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242775" ref_strand="+" ref_description="SGN-E242775 [cLED-31-O6]">
      <seq>aacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttgaagaacttgatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97560" stop="95852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97260" g_stop="97228" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="121" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="200" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="291" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="370" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96156" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="486" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E242775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97260" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG</genome_strand>
        <mrna_strand>AACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235292" ref_strand="+" ref_description="SGN-E235292 [cLED-11-O19]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggcccctccattcaccttgagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="95870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="482" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96170" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="584" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E235292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTG</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238420" ref_strand="+" ref_description="SGN-E238420 [cLED-17-P3]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaatatggccccttcattcaccttgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="95873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="482" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96173" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="581" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E238420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTC</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTTCATTCACCTTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324500" ref_strand="+" ref_description="SGN-E324500 [cTOC-9-G11]">
      <seq>aagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaagtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtcaaaagcatggtatgttggtgagtttttctggtgatcatgtaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="95897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97362" g_stop="97228" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="223" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="302" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="393" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="472" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96197" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E324500" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97362" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATA</genome_strand>
        <mrna_strand>AAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAAGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231611" ref_strand="+" ref_description="SGN-E231611 [cLED-4-C21]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="95942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="482" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96271" g_stop="96242" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="512" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E231611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGTC</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268462" ref_strand="+" ref_description="SGN-E268462 [cLEI-13-N8]">
      <seq>ttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccagaatggggtgttggtacatattttggatcacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98584" stop="95943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98412" g_stop="98406" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="84" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="159" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="291" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="379" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="458" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="549" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="628" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96271" g_stop="96243" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="657" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E268462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98412" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
          <exon e_start="96271" e_stop="96243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTACATTTCTTCCTTTTATTTTTAATCTTCAAATTAAATTAAATTAAATTCTTATTTCTATTTTGTAAATAAATTAATAATTTTTTGTTTAATCAAGGTGTTGGTACATATTTTGGATCACAATGT</genome_strand>
        <mrna_strand>TTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG.................................................................................................GTGTTGGTACATATTTTGGATCACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239667" ref_strand="+" ref_description="SGN-E239667 [cLED-33-K11]">
      <seq>agcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcacgaaggttggaaagcatttatagacagtccaataattggagagataacgggaactggtttagtactttctacagagtttggagataacagatctcctaatgatccttttccaccagactgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97553" stop="96068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97253" g_stop="97228" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="114" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="284" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.599" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="363" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E239667" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97253" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG</genome_strand>
        <mrna_strand>AGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCACGAAGGTTGGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAACGGGAACTGGTTTAGTACTTTCTACAGAGTTTGGAGATAACAGATCTCCTAATGATCCTTTTCCACCAGACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281585" ref_strand="-" ref_description="SGN-E281585 [cLEL-1-N12](-)">
      <seq>gcacgaggaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatccttttccaccaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97259" stop="96068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96963" g_stop="96917" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.89"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="126" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="217" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96447" g_stop="96369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E281585" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281585" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96963" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG</genome_strand>
        <mrna_strand>GCACGAGGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400091" ref_strand="+" ref_description="SGN-E400091 [cSTC-4-D16]">
      <seq>ctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagcgaagaaatttccaaggtcataagtgctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacaccctgttgcgtgtgccgttgcattggaagcactaaagatttataaggaaaaaaatattactgaggtagtgaacaaattatcaccaaagtttcaagaaggtttgaaagcatttatcgacagtcccataattggggagataaggggaactggtttggttctttttacggagtttgtagataacaaatcttctaatgatccctttccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97307" stop="96078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97240" g_stop="97228" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="101" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="180" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="271" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.599" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96378" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="341" r_length="70" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E400091" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97240" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCAC</genome_strand>
        <mrna_strand>CTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGCGAAGAAATTTCCAAGGTCATAAGTGCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACACCCTGTTGCGTGTGCCGTTGCATTGGAAGCACTAAAGATTTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAACAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATCGACAGTCCCATAATTGGGGAG...................................................................................................................................ATAAGGGGAACTGGTTTGGTTCTTTTTACGGAGTTTGTAGATAACAAATCTTCTAATGATCCCTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325438" ref_strand="+" ref_description="SGN-E325438 [cTOC-1-H11]">
      <seq>aaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98544" stop="96082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98244" g_stop="98202" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="118" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="250" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="338" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="417" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="508" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96447" g_stop="96382" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="574" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E325438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98244" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTT</genome_strand>
        <mrna_strand>AAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242027" ref_strand="+" ref_description="SGN-E242027 [cLED-27-D21]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctacagagtttgtagataacaaatctcctaatgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="96085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96447" g_stop="96385" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="466" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E242027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCT</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304169" ref_strand="+" ref_description="SGN-E304169 [cLEX-6-G19]">
      <seq>aacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagataaggggaactggtttagtactttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98262" stop="96119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98205" g_stop="98202" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="79" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="211" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="299" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="378" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="469" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96447" g_stop="96419" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="498" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E304169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98205" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
          <exon e_start="96447" e_stop="96419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGGTACATATTTTTCTTATATACATTTAAGTGTTTTTTTTAGTATAAATTTATTTATATTATTAATGTAAAAAATTTTAAACTCAAAATTTTATTCACTCTTTTTCCTTTTTCTTTTTCTTTTTAAAAAAAAGATAAGGGGAACTGGTTTAGTACTTTCTAC</genome_strand>
        <mrna_strand>AACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG...................................................................................................................................ATAAGGGGAACTGGTTTAGTACTTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241036" ref_strand="+" ref_description="SGN-E241036 [cLED-24-P4]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="96277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96579" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E241036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439355" ref_strand="+" ref_description="SGN-E439355 [cSTA-11-H14]">
      <seq>gaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattcctccggcaacctattttgagaagattcaagctgtcttaaagaaatatgacattcttttcatcgcggatgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaaacctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagcgaagaaatttccaaggtcataagtgttcaaagcaatcaacttggtgttttttgccatggatttacttattctggacaccctgttgcgtgtgccgttgcattggaagcactaaagatttataaggaaaaaaatattactgaggtagtgaacaaattatcaccaaagtttcaggaaagtttgaaagcatttatcgacagtcccataattgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98570" stop="96281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98270" g_stop="98202" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="144" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="276" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="364" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="443" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96669" g_stop="96581" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="532" r_length="89" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E439355" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98270" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAA-TGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAG</genome_strand>
        <mrna_strand>GAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGCAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTCTTAAAGAAATATGACATTCTTTTCATCGCGGATGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGCGAAGAAATTTCCAAGGTCATAAGTGT-TCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACACCCTGTTGCGTGTGCCGTTGCATTGGAAGCACTAAAGATTTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAACAAATTATCACCAAAGTTTCAGGAAAGTTTGAAAGCATTTATCGACAGTCCCATAATTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243442" ref_strand="+" ref_description="SGN-E243442 [cLED-34-G18]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgangtagtgaataaattattaccaaagtttcaagaaggtttgaaagcatttatagacagtccaataattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="96281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96581" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="401" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E243442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAG</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGANGTAGTGAATAAATTATTACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295321" ref_strand="+" ref_description="SGN-E295321 [cLET-20-J2]">
      <seq>tcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattatcaccaaagtttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98746" stop="96320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98446" g_stop="98406" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="118" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="193" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="325" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="413" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="492" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96669" g_stop="96620" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="542" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E295321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98446" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAG</genome_strand>
        <mrna_strand>TCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702171" ref_strand="+" ref_description="SGN-E702171 [FA18AA03]">
      <seq>ccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctctgggcttccatcactacatctaaaatttgatctaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgtcgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattactgaggtagtgaataaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101370" stop="96335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101070" g_stop="101033" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="136" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="229" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="303" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="431" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="508" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="583" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="715" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="803" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="882" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="96669" g_stop="96635" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="917" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E702171" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101070" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACTGAGGTAGTGAATAAATTAT</genome_strand>
        <mrna_strand>CCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATCTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTCGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACTGAGGTAGTGAATAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324380" ref_strand="+" ref_description="SGN-E324380 [cTOC-6-N11]">
      <seq>agacagaagaggagtactcaactaggttggcaaataatttggagaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98575" stop="96354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98275" g_stop="98202" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="149" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="281" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="369" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="448" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96669" g_stop="96654" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="464" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E324380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98275" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACT</genome_strand>
        <mrna_strand>AGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAGAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244741" ref_strand="+" ref_description="SGN-E244741 [cLED-38-H9]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="96354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96654" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="328" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E244741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATATTACT</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323934" ref_strand="+" ref_description="SGN-E323934 [cTOC-3-C24]">
      <seq>ttggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98725" stop="96443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98425" g_stop="98406" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="97" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="172" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="304" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="392" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="471" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96669" g_stop="96658" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="483" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E323934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98425" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAATAT</genome_strand>
        <mrna_strand>TTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240587" ref_strand="+" ref_description="SGN-E240587 [cLED-21-B5]">
      <seq>ttatttcgaaaagattcaagctgttttaaagaaatatgacattctnnnnatcgncgacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataaggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97661" stop="96443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="145" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="96746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="312" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96669" g_stop="96661" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="321" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E240587" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96746"/>
          <exon e_start="96669" e_stop="96661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAAAA</genome_strand>
        <mrna_strand>ATTCAAGCTGTTTTAAAGAAATATGACATTCTNNNNATCGNCGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA............................................................................GGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202914" ref_strand="+" ref_description="SGN-E202914 [cLEB-1-B18]">
      <seq>gcacgagcgatcgcttattctttatatttacttatattctaaattcttctatttatctttctatcaatcgaattaataaatttaaactctaattagaattaaaataagtgtgctatatagatatatatatataatatttacataatcagatcacttcaaattcgtaattcttaatttgactatttttaacattgttttaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgagcatataatataaatgtgattgaatatttacttaatatatatagtattcatctatttatattttaataatatttgtttctacaattaggtgttttttgccatggatttacttattctggacatcctgttgcgtgtgcggttgcattggaagcactaaaaatctataagtacgtatctaattagttaaatattctttttatatcgtcaatatactaaaaatattcatatttaattttttttcagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="97500" stop="96363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97205" g_stop="96663" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E202914" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97205" e_stop="96663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAA</genome_strand>
        <mrna_strand>GCACGAGCGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTGTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTCTTTTTATATCGTCAATATACTAAAAATATTCATATTTAATTTTTTTTCAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454193" ref_strand="+" ref_description="SGN-E454193 [cSTS-22-O8]">
      <seq>gtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattcctccggcaacctattttgagaagattcaagctgtcttaaagaaatatgacattcttttcatcgcggatgaggtgatatgtggatttggaagactggggacaatgtttggctgtgataagtacaacattaaacctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagcgaagaaatttccaaggtcataagtgctcaaagcaatcaactttggtgttttttgccatggatttacttattctggacaccctgtttgcgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99730" stop="96477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99430" g_stop="99389" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="116" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="155" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="244" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="321" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="528" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="617" r_length="89" r_score="0.920"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.86"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96824" g_stop="96777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="666" r_length="49" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E454193" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99430" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAAC-TTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTG-TTGCGTGTG</genome_strand>
        <mrna_strand>GTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGCAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTCTTAAAGAAATATGACATTCTTTTCATCGCGGATGAGGTGATATGTGGATTTGGAAGACTGGGGACAATGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGCGAAGAAATTTCCAAGGTCATAAGTGCTCAAAGCAATCAACTTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACACCCTGTTTGCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268016" ref_strand="+" ref_description="SGN-E268016 [cLEI-15-K18]">
      <seq>tacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaagtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99370" stop="96477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99070" g_stop="99015" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="95" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="184" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="261" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="336" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="468" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="556" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96824" g_stop="96777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="604" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E268016" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99070" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTG</genome_strand>
        <mrna_strand>TACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAAGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271525" ref_strand="+" ref_description="SGN-E271525 [cLEM-23-A4]">
      <seq>caaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacatcctgttgcgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99348" stop="96477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99048" g_stop="99015" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="73" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="162" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="239" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="314" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="446" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="534" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96824" g_stop="96777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="582" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E271525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99048" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTG</genome_strand>
        <mrna_strand>CAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471023" ref_strand="+" ref_description="SGN-E471023 [cSTB-21-N12]">
      <seq>aaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatataaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattcctccggcaacctattttgagaagattcaagctgtcttaaagaaatatgacattcttttcatcgcggatgaggtgatatgtggatttggaagactggggacaatgtttggctgtgataagtacaacattaaacctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagcgaagaaatttccaaggtcataagtgctcaaagcaatcaacttggtgttttttgccatggatttacttattctggacaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99343" stop="96486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99043" g_stop="99015" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="68" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="157" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="234" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="309" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="441" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="529" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96824" g_stop="96786" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="568" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E471023" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99043" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTG</genome_strand>
        <mrna_strand>AAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATATAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGCAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTCTTAAAGAAATATGACATTCTTTTCATCGCGGATGAGGTGATATGTGGATTTGGAAGACTGGGGACAATGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGCGAAGAAATTTCCAAGGTCATAAGTGCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325333" ref_strand="+" ref_description="SGN-E325333 [cTOC-1-F14]">
      <seq>aaaatcttatactcaaagagggtctgaaacagtgctgctttattgcgaaccagcatgggaggagcaggtttaattctcactcttatttgaaaagattaagctgtttaaaaaatatgacattttttatcgcggacgaggtgatatgtggatttggaagacttggggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagtgaagaaatttctaaggtcataatgtctcaaagcaatcaacttggtgttttttgccatggatttacttattctggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98533" stop="96491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98233" g_stop="98202" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="94" r_length="63" r_score="0.840"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="222" r_length="128" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96917" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="310" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96824" g_stop="96791" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="344" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E325333" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.049" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98233" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96917"/>
          <exon e_start="96824" e_stop="96791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTT-GGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACA</genome_strand>
        <mrna_strand>AAAATCTTATACTCAAAGAGGGT-CTGAAACA...............................................................................................................................................................................................................................................G-TGCTGCTTT-ATTGCG-AACCAG-CATGGGAGGAGCA-G-GTT-TAATT-CT-CA-CT-CTTATTT-GAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-AAGCTGTT-TAAA-AAATATGACATT-TTTT-ATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG............................................................................................GTGTTTTTTGCCATGGATTTACTTATTCTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281314" ref_strand="+" ref_description="SGN-E281314 [cLEL-1-L11](-)">
      <seq>gattgctttgagacattatgaccttagaaatttcttcacttacaagcacagcaccaattggtatatatccaccagaaagagccttaaaacaatgttaaaaatagtcaaattaagaattacgaatttgaagtgatctgattatgtaaatattatatatatatatctatatagcacacttattttaattctaattagagtttggatttgttaattcgattgatagaaccatacatagaagaatttagaatataagtaaatataaagaataagcgatcgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="+" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96623" stop="97500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96923" g_stop="97205" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="+" ref_id="SGN-E281314" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96923" e_stop="97205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCTTTGAGACATTATGACCTTAGAAATTTCTTCACTTACAAGCACAGCACCAATTGGTATATATCCACCAGAAAGAGCCTTAAAACAATGTTAAAAATAGTCAAATTAAGAATTACGAATTTGAAGTGATCTGATTATGTAAATATTATATATATATATCTATATAGCACACTTATTTTAATTCTAATTAGAGTTTAAATTTATTAATTCGATTGATAGAAAGATAAATAGAAGAATTTAGAATATAAGTAAATATAAAGAATAAGCGATCGTCAAATC</genome_strand>
        <mrna_strand>GATTGCTTTGAGACATTATGACCTTAGAAATTTCTTCACTTACAAGCACAGCACCAATTGGTATATATCCACCAGAAAGAGCCTTAAAACAATGTTAAAAATAGTCAAATTAAGAATTACGAATTTGAAGTGATCTGATTATGTAAATATTATATATATATATCTATATAGCACACTTATTTTAATTCTAATTAGAGTTTGGATTTGTTAATTCGATTGATAGAACCATACATAGAAGAATTTAGAATATAAGTAAATATAAAGAATAAGCGATCGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378030" ref_strand="+" ref_description="SGN-E378030 [TUS-21-D8]">
      <seq>caactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcanaggctctttctggtggatatataccaattggtgctgtgncttgtagtgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100064" stop="96654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99764" g_stop="99705" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="153" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="266" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="432" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="507" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="639" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97004" g_stop="96954" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="690" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E378030" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99764" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTG-CTTGTAAGTGAAGAA</genome_strand>
        <mrna_strand>CAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCANAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGNCTTGT-AGTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413616" ref_strand="+" ref_description="SGN-E413616 [STM-18-M13]">
      <seq>ggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggagccagtcatgggaggagcaggtgtcataattcctccggaaacctattttgagaagatccaagctgttttaaagaagtatgacattcttttcatcgcggatgaagtgatatgtggatttggaagacttgggacantgtttggctgtgataagtacaacattaaacctgatcttgtctctctagcaaaggctctttctggtggatatataccaattggtgctgtgcttgtaagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100103" stop="96658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99803" g_stop="99705" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="192" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="266" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="305" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="394" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="471" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="546" r_length="75" r_score="0.893"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="678" r_length="132" r_score="0.947"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97004" g_stop="96958" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="725" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E413616" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99803" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGA</genome_strand>
        <mrna_strand>GGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAGCCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGAAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTTTTAAAGAAGTATGACATTCTTTTCATCGCGGATGAAGTGATATGTGGATTTGGAAGACTTGGGACANTGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCTCTCTAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323905" ref_strand="+" ref_description="SGN-E323905 [cTOC-3-G19]">
      <seq>tttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatataccaattggtgctgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99729" stop="96668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99429" g_stop="99389" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="115" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="154" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="243" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="320" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="527" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97004" g_stop="96968" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="564" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E323905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99429" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGC</genome_strand>
        <mrna_strand>TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291420" ref_strand="+" ref_description="SGN-E291420 [cLET-2-P20]">
      <seq>aggaactatcacttgccaggtgagacagaagaggagtactcaactaggctggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccaactacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcacaggctctttctggtggatatataccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98723" stop="96677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98424" g_stop="98406" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="96" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="171" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="303" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97004" g_stop="96977" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="331" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E291420" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98424" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTG</genome_strand>
        <mrna_strand>AGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGCTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAACTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCACAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201854" ref_strand="+" ref_description="SGN-E201854 [cLEC-18-G11]">
      <seq>gctaatgacactcaagtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttgcatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99396" stop="96682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99396" g_stop="99389" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="15" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="89" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="128" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="217" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="294" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="501" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97004" g_stop="96982" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="524" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E201854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99396" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACC</genome_strand>
        <mrna_strand>ACACTCAA............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTGCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338356" ref_strand="+" ref_description="SGN-E338356 [cTOE-13-J14]">
      <seq>aacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtgataattcctccagactacttatttcgaaaagattcaagctgttctaaagaaatgtgacattcttttcatcgcggacgaggtgatatgtggattcggaagactcgggacaatgtttggctgtgataaggacaacattaagcctgatcttgtctctatagcaaaggctctttctggtggatatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98262" stop="96682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98205" g_stop="98202" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="80" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="212" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97004" g_stop="96982" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="235" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E338356" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98205" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAG-CTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACC</genome_strand>
        <mrna_strand>AACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTGATAATTCCTCCAGACTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTCTAAAGAAATGTGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTCGGAAGACTCGGGACAATGTTTGGCTGTGATAAGGACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTCTGGTGGATATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703756" ref_strand="+" ref_description="SGN-E703756 [FA22BE08]">
      <seq>taatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctctgggcttccatcactacatctaaaatttgatctaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctctatagcaaaggctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="96927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="42" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="124" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="295" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="388" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="462" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="501" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="590" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="667" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="742" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97228" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="874" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="97004" g_stop="96997" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="882" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E703756" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97228"/>
          <exon e_start="97004" e_stop="96997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGTAATAAAAATTATAGCGAAATGATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATCTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG...............................................................................................................................................................................................................................GCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315838" ref_strand="+" ref_description="SGN-E315838 [cTOA-26-C19]">
      <seq>ccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaagtgatatgtggatttggaagacttgggacaatgnttggctgtgataaagtacacattaagcctgatcttgtctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="96935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101464" g_stop="101408" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="130" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="228" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="321" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="395" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="434" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="523" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="600" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="675" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97359" g_stop="97235" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="800" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E315838" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101464" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGAT-AAGTACAACATTAAGCCTGATCTTGTCTCTAT</genome_strand>
        <mrna_strand>CCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAAGTGATATGTGGATTTGGAAGACTTGGGACAATGNTTGGCTGTGATAAAGTAC-ACATTAAGCCTGATCTTGTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315768" ref_strand="+" ref_description="SGN-E315768 [cTOA-26-D17]">
      <seq>ccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaagtgatatgtggatttggaagacttgggacaatgtttggctgtgatagtacacattaagcctgatcttgtctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="96935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101464" g_stop="101408" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="130" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="228" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="321" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="395" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="434" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="523" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="600" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="675" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97359" g_stop="97235" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="798" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E315768" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101464" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTAT</genome_strand>
        <mrna_strand>CCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAAGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGAT-AGTAC-ACATTAAGCCTGATCTTGTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469152" ref_strand="+" ref_description="SGN-E469152 [cSTB-10-L3]">
      <seq>tgactctcatgtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggagccagtcatgggaggagcaggtgtcataattcctcctgaaacctattttgagaagatccaagctgttttaaagaagtatgacattcttttcatcgcggatgaggtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaaacctgatcttgtctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99393" stop="96935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99393" g_stop="99389" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="10" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="84" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="123" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="212" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="289" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="364" r_length="75" r_score="0.893"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97359" g_stop="97235" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="489" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469152" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99393" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTAT</genome_strand>
        <mrna_strand>CTCAT............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAGCCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCTGAAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTTTTAAAGAAGTATGACATTCTTTTCATCGCGGATGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555450" ref_strand="+" ref_description="SGN-E555450 [cTSC-3-K11]">
      <seq>ctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaagtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacattaagcctgatcttgtctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="96936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="45" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="200" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="298" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="391" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="504" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="593" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="670" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="745" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97236" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="869" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E555450" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAAGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467249" ref_strand="+" ref_description="SGN-E467249 [cSTB-44-C5]">
      <seq>gaattcggcacgagggtgaagatggtttggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttttcgaaacaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagctgctgctttcattgcggagccagtcatgggaggagcaagtgtcataattgctccggaaacctattttgagaagatccaagctgttttaaagaagtatgacattcttttcatcgcggatgaggtgatatgtggatttggaagacttgggacaatgcttggctgtgataagtacaacattaaacctgatcttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99389" stop="96939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="89" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="128" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="217" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="294" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="0.853"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97359" g_stop="97239" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="490" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E467249" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCT</genome_strand>
        <mrna_strand>GTGAAGATGGTTTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTTTCGAAACAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GCTGCTGCTTTCATTGCGGAGCCAGTCATGGGAGGAGCAAGTGTCATAATTGCTCCGGAAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTTTTAAAGAAGTATGACATTCTTTTCATCGCGGATGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGCTTGGCTGTGATAAGTACAACATTAAACCTGATCTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440908" ref_strand="+" ref_description="SGN-E440908 [cSTA-28-O18]">
      <seq>ctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactagggtggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattcctccggcaacctattttgagaagattcaagctgtcttaaagaaatatgacattcttttcatcgcggatgaagtgatatgtggatttggaagactggggacaatgtttggctgtgataagtacaacattaaacctgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98778" stop="96943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98478" g_stop="98406" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="150" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="225" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97359" g_stop="97243" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="342" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E440908" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98478" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTT</genome_strand>
        <mrna_strand>CTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGGTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGCAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTCTTAAAGAAATATGACATTCTTTTCATCGCGGATGAAGTGATATGTGGATTTGGAAGACTGGGGACAATGTTTGGCTGTGATAAGTACAACATTAAACCTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231783" ref_strand="+" ref_description="SGN-E231783 [cLED-7-A1]">
      <seq>cttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataattgggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgatgtgatatgtggatttggaagacttgggacaatgtttggctgtgataagtacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99782" stop="96956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99712" g_stop="99705" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="101" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="214" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="303" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="380" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="455" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97256" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="559" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E231783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99712" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACAT</genome_strand>
        <mrna_strand>CTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTGGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGATGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233581" ref_strand="+" ref_description="SGN-E233581 [cLED-9-D10]">
      <seq>ggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattccttcagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgcggacgaagtgatatgtggatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99770" stop="96994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99470" g_stop="99389" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="156" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="195" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="284" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="361" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97359" g_stop="97294" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="502" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E233581" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99470" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGA</genome_strand>
        <mrna_strand>GGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTTCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAAGTGATATGTGGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469229" ref_strand="+" ref_description="SGN-E469229 [cSTB-10-L18]">
      <seq>gtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattcctccggcaacctattttgagaagattcaagctgtcttaaagaaatatgacattcttttcatcgcggatgaagtgatatgtggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100096" stop="96997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99796" g_stop="99705" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="185" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="259" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="298" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="539" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97297" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="602" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469229" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99796" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTT</genome_strand>
        <mrna_strand>GTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGCAACCTATTTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTCTTAAAGAAATATGACATTCTTTTCATCGCGGATGAAGTGATATGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611985" ref_strand="+" ref_description="SGN-E611985 [61743]">
      <seq>ggaatggccaagactactaatggatttaaggggcatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttattatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgcttttcattgcggagccagtcatgggaggagcaggtgtcataattcctccggaaaacctattttgagaaagatcccaagctgttttaagagaacgtatgacattcttttcatcgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="104" r_length="81" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="177" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="275" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="368" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="442" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="481" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="570" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="647" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="725" r_length="78" r_score="0.827"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.990" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97359" g_stop="97316" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="772" r_length="47" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E611985" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGC-TTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAG-CTACTTATTTCGA-AAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGAT-TCAAGCTGTTTTAA-AGAA-ATATGACATTCTTTTCATCGCGGA</genome_strand>
        <mrna_strand>ATTTAAGGGGCATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTA-TTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTTCATTGCGGAGCCAGTCATGGGAGGAGCAGGTGTCATAATTCCTCCGGAAAACCTATTTTGAGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGCTGTTTTAAGAGAACGTATGACATTCTTTTCATCGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318763" ref_strand="+" ref_description="SGN-E318763 [cTOB-11-I13]">
      <seq>acaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctgcagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattcttttcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100019" stop="97019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99719" g_stop="99705" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="108" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="182" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="221" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="387" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="462" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97319" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="503" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E318763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99719" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGC</genome_strand>
        <mrna_strand>ACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTGCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348899" ref_strand="+" ref_description="SGN-E348899 [cTOF-29-G19]">
      <seq>gaccctttagttatagacaaagcggagtgttcttctgtctctgacgtaactggaaagtagtacccttgattctttctctggtttctggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggangcangtgttantaattcctccagctacttatttcgaaaagattcagctgttttaaagaatatgacattcttttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101407" stop="97020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="101" r_length="74" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="199" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="292" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="366" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="405" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="571" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="648" r_length="77" r_score="0.933"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97359" g_stop="97320" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="686" r_length="38" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E348899" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTA-CCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGA-GCAGGTGTTA-TAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCG</genome_strand>
        <mrna_strand>TGTTCTTCTGTCTCTGACGTAACTGGAAAGTAGTACCCTTGATTCTTTCTCTGGTTTCTGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGANGCANGTGTTANTAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC-AGCTGTTTTAAAG-AATATGACATTCTTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321958" ref_strand="+" ref_description="SGN-E321958 [cTOB-29-I20]">
      <seq>ttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctngaacagttgctgctttcattgcggaaccagtcatgggaggagcangtgttataattccctcagctacttatttcgaaaagatcaagctgttttaaagaatatgacattctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="47" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="129" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="202" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="300" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="393" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="467" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="506" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="595" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="672" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="747" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97359" g_stop="97325" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="780" r_length="33" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E321958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTNGAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCANGTGTTATAATTCCCTCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCAAGCTGTTTTAAAG-AATATGACATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233099" ref_strand="+" ref_description="SGN-E233099 [cLED-6-D22]">
      <seq>ctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcgaaaagattcaagctgttttaaagaaatatgacattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100090" stop="97027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99790" g_stop="99705" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="179" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="253" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="292" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="458" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97888" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="533" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97359" g_stop="97327" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="566" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E233099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99790" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97888"/>
          <exon e_start="97359" e_stop="97327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGGTCTGGTTTATTATTTTATTCGTCTCAATTTATATTAATAATATTTGATTAGACATAATTTATATTAATAATATTTTATTAGATATAAATTTTGATGAAAAATAAGTTATAGATACATATGGCTACTATACATTTCATTAATGATAAATAGACATTTAAATGTTATAATATTATTAAACATAAGAAAAAAGGATAATTTTTTTTTGAAAATAATTAATACAAAAAGTATTATATAAATTAAGACGGAAAGAGTAATTCGCTGCACCCAATTTATTGTTATTCACCTTGAAAGTTCATTTGATTTGATGCTTTCAAATATTATTGTCCCTAAAATTTATAGTATTTTTTAAAATTATATACACTTCCCATCTCATTTTTTTTTCAATTGTTTTTTTCTAGCAAAATACTTCTTACGTTTTATTTTTCGTAAATAATTATAAGAACATTTTTAGTCATTTAATATTTCATTTTTTTAATTTAAAAAAATAATAACTCATGTCTACTTTTTTATTTTTTATTTTTTTTTAGATTCAAGCTGTTTTAAAGAAATATGACATTCTT</genome_strand>
        <mrna_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGTTTTAAAGAAATATGACATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449930" ref_strand="+" ref_description="SGN-E449930 [cSTS-7-N4]">
      <seq>attttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcngaaccagtcatgggaggagcangtgtcataattnctccggcaacctattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="124" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="295" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="388" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="462" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="501" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="590" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="667" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97893" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="737" r_length="70" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E449930" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCG</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCNGAACCAGTCATGGGAGGAGCANGTGTCATAATTNCTCCGGCAACCTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233205" ref_strand="+" ref_description="SGN-E233205 [cLED-6-J10]">
      <seq>tcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctgataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataattcctccagctacttatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100086" stop="97593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99786" g_stop="99705" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="175" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="249" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="288" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="377" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="454" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97893" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="524" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E233205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99786" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCG</genome_strand>
        <mrna_strand>TCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTGATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326556" ref_strand="+" ref_description="SGN-E326556 [cTOC-17-L19]">
      <seq>tttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtggtataattcctccagctacttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="48" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="130" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="203" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="394" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="507" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="673" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97895" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="741" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E326556" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGGTATAATTCCTCCAGCTACTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261980" ref_strand="+" ref_description="SGN-E261980 [cLEG-58-O2]">
      <seq>ttctctctctatatttcatttcttgctttatctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggaagcagtgttataattcctccagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="80" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="162" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="235" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="333" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="426" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="500" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="539" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="628" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="705" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97900" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="768" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E261980" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAAGCAGTGTTATAATTCCTCCAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328231" ref_strand="+" ref_description="SGN-E328231 [cTOC-21-B9]">
      <seq>tttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatggggaggagcangtgttataattcctccagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="48" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="130" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="203" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="394" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="507" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="673" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97962" g_stop="97900" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="737" r_length="64" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E328231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCAT-GGGAGGAGCAGGTGTTATAATTCCTCCAGCTACT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGGAGGAGCANGTGTTATAATTCCTCCAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456187" ref_strand="+" ref_description="SGN-E456187 [cSTS-28-F2]">
      <seq>gaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgtcataattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="108" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="181" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="279" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="372" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="446" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="485" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="574" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="651" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97911" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="703" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E456187" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTCATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455274" ref_strand="+" ref_description="SGN-E455274 [cSTS-25-H12]">
      <seq>ttttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaagagcangtgtcataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="123" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="196" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="294" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="387" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="461" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="500" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="589" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="666" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97912" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="717" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E455274" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAAGAGCANGTGTCATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232916" ref_strand="+" ref_description="SGN-E232916 [cLED-8-J6]">
      <seq>aaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaaccagtcatgggaggagcaggtgttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99734" stop="97614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99434" g_stop="99389" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="159" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="248" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="325" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97962" g_stop="97914" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="374" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E232916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99434" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAA</genome_strand>
        <mrna_strand>AAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412043" ref_strand="+" ref_description="SGN-E412043 [STM-15-L21]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagaaggtcctgaaacagttgctgctttcattgcggaaccagtcatgggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="582" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="659" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97928" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="694" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E412043" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGG</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAAGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464975" ref_strand="+" ref_description="SGN-E464975 [cPRO-19-B4]">
      <seq>ggaagaagtatcttgattctttatctggtttatggtgcacatcattaggagggagtgaggctcgtcttattgaagctgcaaataaacaactcaacacgttgccattttaccattcattttggaatcgtaccacaaaaccttctctggatcttgcaaaggagctcctagatatgtttactgcaaaaaaaatggcaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgcccttggaaggccaaacaaaaagaaaattattgctcaagaaaactcataccatggttccacttacctgactgctggtctctctgggcttcctgtactacatcaaaaatttgatttgccacctccacgtattttgcacactcagtgccctcattattggagcaatcacttgcctggtgagacagaagaggagttctcaactagattggcaaataatttggaaaatcttatactcaaagaagggcctgaaacagtagctgctttcattgcggaaccagtcatgggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101381" stop="97628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101080" g_stop="101033" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="146" r_length="98" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="239" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="313" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="352" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="441" r_length="89" r_score="0.843"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="518" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97962" g_stop="97928" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="553" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E464975" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101080" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGG</genome_strand>
        <mrna_strand>GGAAGAAGTATCTTGATTCTTTATCTGGTTTATGGTGCACATCATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGTGAGGCTCGTCTTATTGAAGCTGCAAATAAACAACTCAACACGTTGCCATTTTACCATTCATTTTGGAATCGTACCACAAAACCTTCTCTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCCTAGATATGTTTACTGCAAAAAAAATGGCAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCCTTGGAAGGCCAAACAAAAAGAAAATTATTGCTCAAGAAAACTC.................................................................................................................ATACCATGGTTCCACTTACCTGACTGCTGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGTACTACATCAAAAATTTGATTTGCCACCTCCACGTATTTTGCACACTCAGTGCCCTCATTATTGGAGCAATCACTTGCCTG...............................................................................................................................GTGAGACAGAAGAGGAGTTCTCAACTAGATTGGCAAATAATTTGGAAAATCTTATACTCAAAGAAGGGCCTGAAACA...............................................................................................................................................................................................................................................GTAGCTGCTTTCATTGCGGAACCAGTCATGGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453694" ref_strand="+" ref_description="SGN-E453694 [cSTS-20-H8]">
      <seq>ctcttgttctttctcctcatagattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagttttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaagagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="146" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="219" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="317" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="411" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="524" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="613" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="690" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97941" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="712" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E453694" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAG-TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAAGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449494" ref_strand="+" ref_description="SGN-E449494 [cSTS-6-N3]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattgcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="582" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="659" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97941" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="681" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E449494" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTGCGGAAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTGCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447776" ref_strand="+" ref_description="SGN-E447776 [cSTS-2-I11]">
      <seq>tagattttcaagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaagagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="200" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="298" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="391" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="504" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="593" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="670" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97947" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="686" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E447776" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTG</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAAGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470344" ref_strand="+" ref_description="SGN-E470344 [cSTB-17-J20]">
      <seq>ggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgctgctttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100105" stop="97900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="120" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="213" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="287" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="326" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="415" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="492" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97962" g_stop="97947" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="508" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E470344" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGCTGCTTTCATTG</genome_strand>
        <mrna_strand>GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGCTGCTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579317" ref_strand="+" ref_description="SGN-E579317 [87299]">
      <seq>ctctcttgttctttctcctcatagattttcaagaaagcttgaaggaatggccaagactactaatggatttaaggggcatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaacagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="148" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="221" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="319" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="412" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="486" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="525" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="614" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="691" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97962" g_stop="97958" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="696" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E579317" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
          <exon e_start="97962" e_stop="97958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTAATTTTCTATATACTTTTGTCACTTATTATCAATTTTTTTCGATATTTCGCGTGATGAAGAAACTTTTTATGATAGATATTCAATTCTTTTTTAAAAAATATTTTTTTAGAAAATAATTTAGAAAAGAAATGTAAGAGTGAAAAGTTATACGTAAAAAATATTATCAATCGATATAAATATTAAAAATAATAATAAAAAATCGAAGCATGAGAAAATATTAACATATATTTGTGTAGGTTGC</genome_strand>
        <mrna_strand>ATTTAAGGGGCATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA...............................................................................................................................................................................................................................................GTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602520" ref_strand="+" ref_description="SGN-E602520 [55586]">
      <seq>cttctttcttcttagcatttttctccaaaatttggctaattatatagtcataattttcaaaaaagcttgaagtaatgggagaggttaatggatttatgggacatgatatgttggcaccctttactgcgggatggcaaattgatatgggacccttagttatagaaagggctgagggttcttatgtctatgatataaatgggaagaagtatcttgattctttatctggtttatggtgcacatcattaggagggagtgaggctcgtcttattgaagctgcaaataaacaactcaacacgttgccattttaccattcattttggaatcgtaccacaaaaccttctctggatcttgcaaaggagctcctagatatgtttactgcaaaaaaaatggcaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgcccttggaaggccaaacaaaaagaaaattattgctcaagaaaactcataccatggttccacttacctgactgctggtctctctgggcttcctgtactacatcaaaaatttgatttgccacctccacgtattttgcacactcagtgccctcattattggagcaatcacttgcctggtgagacagaagaggagttctcaactagattggcaaataatttggaaaatcttatactcaaagaagggcctgaaaccagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="91" r_length="29" r_score="0.759"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="173" r_length="82" r_score="0.878"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="246" r_length="73" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="344" r_length="98" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="511" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="550" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="639" r_length="89" r_score="0.843"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="716" r_length="77" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E602520" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA</genome_strand>
        <mrna_strand>AAGCTTGAAGTAATGGGAGAGGTTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCCTTTACTGCGGGATGGCAAATTGATATGGGACCCTTAGTTATAGAAAGGGCTGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGATATAAATGGGAAGAAGTATCTTGATTCTTTATCTGGTTTATGGTGCACATCATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGTGAGGCTCGTCTTATTGAAGCTGCAAATAAACAACTCAACACGTTGCCATTTTACCATTCATTTTGGAATCGTACCACAAAACCTTCTCTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCCTAGATATGTTTACTGCAAAAAAAATGGCAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCCTTGGAAGGCCAAACAAAAAGAAAATTATTGCTCAAGAAAACTC.................................................................................................................ATACCATGGTTCCACTTACCTGACTGCTGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGTACTACATCAAAAATTTGATTTGCCACCTCCACGTATTTTGCACACTCAGTGCCCTCATTATTGGAGCAATCACTTGCCTG...............................................................................................................................GTGAGACAGAAGAGGAGTTCTCAACTAGATTGGCAAATAATTTGGAAAATCTTATACTCAAAGAAGGGCCTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236494" ref_strand="+" ref_description="SGN-E236494 [cLED-13-N10]">
      <seq>caactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaagagggtcctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100064" stop="97903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99764" g_stop="99705" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="153" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="266" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98203" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E236494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99764" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAAC</genome_strand>
        <mrna_strand>CAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231708" ref_strand="+" ref_description="SGN-E231708 [cLED-4-H13]">
      <seq>cttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99782" stop="97916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99712" g_stop="99705" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="101" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="214" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="303" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98216" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="366" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E231708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99712" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAG</genome_strand>
        <mrna_strand>CTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452374" ref_strand="+" ref_description="SGN-E452374 [cSTS-16-H23]">
      <seq>aagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="191" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="382" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="456" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="495" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98219" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="644" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E452374" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCA</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323584" ref_strand="+" ref_description="SGN-E323584 [cTOC-2-L11]">
      <seq>tataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaagagtactcaactaggttggcaaataatttggaaaatcttatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="44" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99089" i_length="616">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="371" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="410" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="499" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98220" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="558" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E323584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAAGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313928" ref_strand="+" ref_description="SGN-E313928 [cTOA-19-E3]">
      <seq>atgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101478" g_stop="101408" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="144" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="242" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="448" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="537" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98220" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="596" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E313928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101478" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</genome_strand>
        <mrna_strand>ATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472400" ref_strand="+" ref_description="SGN-E472400 [cSTB-28-J5]">
      <seq>ggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100103" stop="97920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99803" g_stop="99705" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="192" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="266" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="305" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="394" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98220" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="453" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E472400" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99803" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</genome_strand>
        <mrna_strand>GGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337463" ref_strand="+" ref_description="SGN-E337463 [cTOE-11-M18]">
      <seq>tttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcacgtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100045" stop="97920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99745" g_stop="99705" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="134" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="208" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="247" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="336" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98220" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="395" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E337463" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99745" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</genome_strand>
        <mrna_strand>TTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAC............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239435" ref_strand="+" ref_description="SGN-E239435 [cLED-23-M9]">
      <seq>ctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100090" stop="97922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99790" g_stop="99705" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="179" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="253" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="292" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98222" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="438" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E239435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99790" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATAC</genome_strand>
        <mrna_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240776" ref_strand="+" ref_description="SGN-E240776 [cLED-24-I20]">
      <seq>ctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100090" stop="97923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99790" g_stop="99705" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="179" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="253" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="292" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98223" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="437" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E240776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99790" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATA</genome_strand>
        <mrna_strand>CTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468276" ref_strand="+" ref_description="SGN-E468276 [cSTB-3-K17]">
      <seq>gattttcaagaaagcttgttggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagttttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaactaggttggcaaataatttggaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="198" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="390" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="592" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98228" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="643" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E468276" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAG-TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATC</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448348" ref_strand="+" ref_description="SGN-E448348 [cSTS-2-P13]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="582" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98253" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="608" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E448348" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475642" ref_strand="+" ref_description="SGN-E475642 [cSTB-41-C18]">
      <seq>agagagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagacagaagaggagtactcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100097" stop="97953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99797" g_stop="99705" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="186" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="260" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="299" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98278" g_stop="98253" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="414" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E475642" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99797" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAACT</genome_strand>
        <mrna_strand>AGAGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGACAGAAGAGGAGTACTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477255" ref_strand="+" ref_description="SGN-E477255 [cSTB-47-L15]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacagaagaggagtactcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="97954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="582" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98254" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="607" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E477255" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAAC</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315078" ref_strand="+" ref_description="SGN-E315078 [cTOB-4-M16]">
      <seq>tttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcgtaatctttttttattattttttctaaaaaaattattttttatatttttattattttattttttttctactttggctaatacaatattctttatatatatcaccttcaaacagataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacagaagaggagtactcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100045" stop="97954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99745" g_stop="99705" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="136" r_length="95" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="98863" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="362" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="451" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98278" g_stop="98254" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="476" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E315078" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99745" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAG--TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAGAAGAGGAGTACTCAAC</genome_strand>
        <mrna_strand>TTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAGAAGAGGAGTACTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474835" ref_strand="+" ref_description="SGN-E474835 [cSTB-38-I17]">
      <seq>caagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaagggggagtgagcctcgtcttattgaagctgcaaataaacaactcaatatattggcattttaccattcattttggaatcattccacaaaaccatctttggatcttgcaaaagagctcataaatatgttgactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcatgtgaaggtggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccaggtgagacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="97" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="170" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="268" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="361" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="435" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="474" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="563" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98270" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="572" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E474835" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAG</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATATATTGGCATTTTACCATTCATTTTGGAATCATTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAAGAGCTCATAAATATGTTGACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAT............................................................................................................................................................................................................................................................................................................GTGAAGGTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................GTGAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268679" ref_strand="+" ref_description="SGN-E268679 [cLEM-9-E9]">
      <seq>actgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaggtgagacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101458" g_stop="101408" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="124" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="222" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="315" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="389" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="428" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="517" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98270" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="526" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E268679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101458" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGACAG</genome_strand>
        <mrna_strand>ACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG...............................................................................................................................GTGAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337935" ref_strand="+" ref_description="SGN-E337935 [cTOE-14-N10]">
      <seq>aaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgccaagtgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="33" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="115" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="188" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="286" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="453" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="492" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="581" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98278" g_stop="98272" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="588" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E337935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGAC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAA...............................................................................................................................GTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481225" ref_strand="+" ref_description="SGN-E481225 [cSTD-17-O6]">
      <seq>tagattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttgccagatgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="200" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="298" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="391" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="504" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="593" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98272" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="600" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E481225" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAGAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGCCAG...............................................................................................................................ATGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481197" ref_strand="+" ref_description="SGN-E481197 [cSTD-17-I10]">
      <seq>agattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattatttggacaatcacttgccagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98406" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="592" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98278" g_stop="98274" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="597" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E481197" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98406"/>
          <exon e_start="98278" e_stop="98274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTATATTATTATTATTATTGTTGTTGTTGTTATTATTTAATGTCTCTTATATTATATTGAGCTTATATTATATTTTTTTTATATTAATAACTATACATTTTACTAAAAAAAGAAATATGTATGGCAGGTGAG</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTTGGACAATCACTTGCCAG...............................................................................................................................ATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320226" ref_strand="+" ref_description="SGN-E320226 [cTOB-21-G8]">
      <seq>ttgctttatctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="58" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="140" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="213" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="311" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="404" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="478" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="517" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98407" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="605" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E320226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442097" ref_strand="+" ref_description="SGN-E442097 [cSTA-31-P6]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctncatatattcttcacactgattgccctcattattggaacaatcacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98409" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="579" r_length="86" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E442097" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTNCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439013" ref_strand="+" ref_description="SGN-E439013 [cSTA-10-H5]">
      <seq>ttcatttcttgcttcatctttctctcttgttctttctcctcatagattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="87" r_length="32" r_score="0.759"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="169" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="242" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="340" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="433" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="507" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="546" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98410" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="631" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E439013" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAG---ACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</genome_strand>
        <mrna_strand>AAGCTTGAAGGAATGGCCAAGACTACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324354" ref_strand="+" ref_description="SGN-E324354 [cTOC-6-M5]">
      <seq>tttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="37" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="119" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="192" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="290" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="457" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="496" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98410" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="581" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E324354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476837" ref_strand="+" ref_description="SGN-E476837 [cSTB-46-I1]">
      <seq>attttcaagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcacctttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatattcttcacactgattgccctcattattggaacaatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="125" r_length="83" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="198" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="463" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="502" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98410" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="585" r_length="83" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E476837" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACC-ATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCC--ATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411199" ref_strand="+" ref_description="SGN-E411199 [STM-14-E2]">
      <seq>gattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctncatatattcttcacactgattgccctcattattggaacaatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="198" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="463" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="502" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98410" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="587" r_length="85" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E411199" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTNCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450820" ref_strand="+" ref_description="SGN-E450820 [cSTS-10-F19]">
      <seq>tgttctttctcctcatagattttcaagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctncatatattcttcacactgattgccctcattattggaacaatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="142" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="215" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="313" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="480" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="519" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98410" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="604" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E450820" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTG</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTNCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442098" ref_strand="+" ref_description="SGN-E442098 [cSTA-31-P6]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98411" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="577" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E442098" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468168" ref_strand="+" ref_description="SGN-E468168 [cSTB-2-H2]">
      <seq>gattttcaagaaagcttgaaagaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="198" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="463" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="502" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98412" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="585" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E468168" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469913" ref_strand="+" ref_description="SGN-E469913 [cSTB-15-H17]">
      <seq>agattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98413" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="585" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469913" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475027" ref_strand="+" ref_description="SGN-E475027 [cSTB-39-C9]">
      <seq>gattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="198" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="463" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="502" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98413" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="584" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E475027" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476268" ref_strand="+" ref_description="SGN-E476268 [cSTB-43-L4]">
      <seq>aagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaacaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="191" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="382" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="456" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="495" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98413" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="577" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E476268" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCAC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204784" ref_strand="+" ref_description="SGN-E204784 [cLEC-14-I21]">
      <seq>tttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggcaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="48" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="130" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="203" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="394" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="467" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="506" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98415" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="586" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E204784" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGG-CAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214743" ref_strand="+" ref_description="SGN-E214743 [cLEC-79-N12]">
      <seq>tttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccggggctccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="48" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="130" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="203" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="394" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="507" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98416" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="586" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E214743" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTAT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GGCTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365811" ref_strand="+" ref_description="SGN-E365811 [cLPT-8-C8]">
      <seq>acagtattaggggggagtgagcctcgttttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgtaccacaaaaccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctctgggctttcatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattggaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100105" stop="98117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="108" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="201" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="275" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="314" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98417" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="392" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E365811" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTA</genome_strand>
        <mrna_strand>GGGGGAGTGAGCCTCGTTTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTACCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTTCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476590" ref_strand="+" ref_description="SGN-E476590 [cSTB-45-I16]">
      <seq>agattttcaagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttccacttatatgactgccggtctctctgggcttccttcactacatctaaaatttgatttgccacctccatatattcttcacactgattgccctcattattggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98419" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="579" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E476590" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAAC</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCCACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTTCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328905" ref_strand="+" ref_description="SGN-E328905 [cTOC-24-F13]">
      <seq>attgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgattgccctcattattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101443" g_stop="101408" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="109" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="207" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="374" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="413" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98421" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="487" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E328905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101443" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGA</genome_strand>
        <mrna_strand>ATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320990" ref_strand="+" ref_description="SGN-E320990 [cTOB-13-D7]">
      <seq>atttatgggaccatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaagtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="156" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="254" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="347" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="421" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="460" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98436" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="519" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E320990" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGA-CATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATT</genome_strand>
        <mrna_strand>ATTTATGGGACCATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAA............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265690" ref_strand="+" ref_description="SGN-E265690 [cLEI-14-P20]">
      <seq>tcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggctttcatcactacatctaaaatttgatttaccacctccatatattcttcacactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="35" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="190" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="288" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="381" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="455" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="494" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="551" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E265690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTTCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323939" ref_strand="+" ref_description="SGN-E323939 [cTOC-3-E20]">
      <seq>tataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="44" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="560" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E323939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336025" ref_strand="+" ref_description="SGN-E336025 [cTOE-6-L16]">
      <seq>ttatctttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacctccatatattcttcacactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="53" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="135" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="208" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="306" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="399" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="473" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="512" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="569" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E336025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474645" ref_strand="+" ref_description="SGN-E474645 [cSTB-37-C2]">
      <seq>ctcctcatagattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="134" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="207" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="305" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="398" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="472" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="511" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="568" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E474645" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475212" ref_strand="+" ref_description="SGN-E475212 [cSTB-39-H15]">
      <seq>agattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgatttgccacctccatatattcttcacactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="464" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="560" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E475212" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGA</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGATTTGCCACCTCCATATATTCTTCACACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327028" ref_strand="+" ref_description="SGN-E327028 [cTOC-18-O14]">
      <seq>aggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgatttaccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101634" g_stop="101614" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="103" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="176" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="274" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="367" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="442" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="481" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98458" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="518" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E327028" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101634" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAG-AAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTTACCACCT</genome_strand>
        <mrna_strand>AGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTTACCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236081" ref_strand="+" ref_description="SGN-E236081 [cLED-16-J18]">
      <seq>tggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="100051" stop="98165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99751" g_stop="99705" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="140" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="214" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="253" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98494" g_stop="98465" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="283" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E236081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99751" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGATTT</genome_strand>
        <mrna_strand>TGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334882" ref_strand="+" ref_description="SGN-E334882 [cTOE-3-B20]">
      <seq>aaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="33" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="115" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="188" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="286" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="453" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="492" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="520" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E334882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337241" ref_strand="+" ref_description="SGN-E337241 [cTOE-7-G12]">
      <seq>atttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="40" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="122" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="195" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="386" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="460" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="499" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="527" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E337241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469414" ref_strand="+" ref_description="SGN-E469414 [cSTB-11-J15]">
      <seq>aagaaagcttgaaggaatggccaagactacctaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="119" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="192" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="290" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="457" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="496" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="524" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469414" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469972" ref_strand="+" ref_description="SGN-E469972 [cSTB-16-G1]">
      <seq>gaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="116" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="493" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="521" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E469972" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472483" ref_strand="+" ref_description="SGN-E472483 [cSTB-28-L14]">
      <seq>ttttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="123" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="196" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="294" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="387" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="461" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="500" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="528" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E472483" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473482" ref_strand="+" ref_description="SGN-E473482 [cSTB-32-F3]">
      <seq>aagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatatgactgccggtctctctgggcttcctgcactacatctaaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="191" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="382" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="456" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="495" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98467" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="523" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E473482" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTGAT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATATGACTGCCGGTCTCTCTGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCACTACATCTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324729" ref_strand="+" ref_description="SGN-E324729 [cTOC-8-D24]">
      <seq>ctaaattgaggaaaaaatatatttattatgataaaaatgtatttattatgataaagttcaattactttactatgatttttatttttatttatataattttacagatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttatatgactgccggtctctccgggcttccatcactacatctaaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101593" g_stop="101408" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="259" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="357" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="450" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="524" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98863" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="563" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98494" g_stop="98469" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="589" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E324729" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101593" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98863"/>
          <exon e_start="98494" e_stop="98469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGTAATATATTGTTCGTTTTATTTTATATGACGATATTTAATTAAGTCTAATTAAATTTTATGTATATTCATTTTTTAATTTATAGTTTTAAGTAGGTTATGATCATTTTAATAATTTACAAAAGATGAAATTAAATAAGTTATCACTATAAATAATAATAAAAAACTCCAATACGTCATAGGAACTGAAAATTCATTTATATCATGTTTGATAAAAAATTATATTATTTATATATGATTAATTGTTTTTTAAATGTATATATGCCATTGTGCTGAGCATTATATTTCATATTTCTATTTTTCAAATCCCATTTAAATATATTAAATTTCAGTATTTATTTTAATCCGTTTAAATTTAATCCAATTCAGGCTTCCATCACTACATCTAAAATTTG</genome_strand>
        <mrna_strand>CTAAATTGAGGAAAAAATATATTTATTATGATAAAAATGTATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG................................................................................................................................................................................................................................................................................................................................................................................GCTTCCATCACTACATCTAAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438140" ref_strand="+" ref_description="SGN-E438140 [cSTA-6-C22]">
      <seq>atagattttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggttcaacttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="128" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="201" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="299" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="392" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="466" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98881" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="487" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E438140" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATAT</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGTTCAACTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325210" ref_strand="+" ref_description="SGN-E325210 [cTOC-1-G13]">
      <seq>aaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcacgtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggctccacttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="32" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="114" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="187" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="285" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="378" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="452" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98882" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="472" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E325210" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAC............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGCTCCACTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317615" ref_strand="+" ref_description="SGN-E317615 [cTOB-8-C22]">
      <seq>atatgtgggcaccatttactgcggggtggatgatggatatgggacctttaattatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcttcttattggagctgcttattaacaactcaataaattggcattttaccactcattttggaatagtaccacaaacccttctttggatcttgcaaaggagctcataactatgtttactgcaaataagatgggaaaagttttttgcacaagtagtggatcacatgctaatgacactcacgtgaaaatggtgtggtattacaacaatgccattgggaggccaagcaaaaagaacattgtttgtcgaaagaatgcataccatggctgcacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101475" g_stop="101408" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="141" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="239" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="332" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="406" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98883" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="425" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E317615" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101475" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTAT</genome_strand>
        <mrna_strand>ATATGTGGGCACCATTTACTGCGGGGTGGATGATGGATATGGGACCTTTAATTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCTTCTTATTGGAGCTGCTTATTAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATAGTACCACAAACCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAACTATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTGCACAAGTAGTGGATCACATGCTAATGACACTCAC............................................................................................................................................................................................................................................................................................................GTGAAAATGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAGCAAAAAGAACATTGTTTGTCGAAAGAATGC.................................................................................................................ATACCATGGCTGCACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471607" ref_strand="+" ref_description="SGN-E471607 [cSTB-24-J3]">
      <seq>attttcaagaaagcttgaaggaatggccaagactactaatggatttaagggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcataccatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="124" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="295" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="388" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="462" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98892" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="472" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E471607" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGC</genome_strand>
        <mrna_strand>ATTTAAGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336761" ref_strand="+" ref_description="SGN-E336761 [cTOE-5-J16]">
      <seq>tttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="48" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="130" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="203" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="394" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98901" g_stop="98896" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="474" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E336761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438368" ref_strand="+" ref_description="SGN-E438368 [cSTA-7-J9]">
      <seq>attttcaagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcaggtgaagttggtgtggtattacaacaatgcctttgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="124" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="295" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="388" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99088" g_stop="99015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="462" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98901" g_stop="98897" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="467" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E438368" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="99015"/>
          <exon e_start="98901" e_stop="98897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAG............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCTTTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC.................................................................................................................ATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266593" ref_strand="+" ref_description="SGN-E266593 [cLEI-5-N10]">
      <seq>ttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactcacgtgaagttggtgtggtattacaacaatgccattgggaggccaaacaaaaagaaaattatttctcgaaaaaatgcgtaatctttttttattattttttctaaaaaaattattttttatatttttattattttattgtttttctactttggctaatacaatattctttatatatatcaccttcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="98603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="38" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="120" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="193" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="291" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="384" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99088" g_stop="98903" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="570" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E266593" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
          <exon e_start="99088" e_stop="98903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAGGTTTTATTATTTATTTTTTTTAGCTTATTATATAAATTTAATTTAATTTTTTATAACATGTTATTTATTATTTATTTTAAATTATTATTAGTTCCAGTGTAATTTAAGTCACTTCTGAAATTTGAAAACTTACATATTTATGTTAAGAAAATTCAAACCATTATATTACAATATAATATAATTTTTTTAATAAAGTGAATTTATTATTTACATTGTTTGGTTGTGTAAATATTTTTATGGAGAAGTTTTGAAGGATATTTAATTATTAATCTTTGACTTTTACATGTCAATTATTTATAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAC............................................................................................................................................................................................................................................................................................................GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTGTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468122" ref_strand="+" ref_description="SGN-E468122 [cSTB-2-H5]">
      <seq>actactaatggatttatgggacatgatatgttggccaccttttactgcggcatggatgattgatatgggacctttagttatagatagagccggagggttcttatgtctatgacgtaaatgaagagtacccttgattctttatctggtttatggtgccaccagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaaccactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactcanggtgaagttggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="95" r_length="84" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="168" r_length="73" r_score="0.849"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.79"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="266" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="359" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E468122" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGG-CACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGC-GGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTA-CCTTGATTCTTTATCTGGTTTATGGTG-C-TCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAAT-G-AAG-AGTACCCTTGATTCTTTATCTGGTTTATGGTGCCACCAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACCACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279276" ref_strand="-" ref_description="SGN-E279276 [cLEL-4-M10](-)">
      <seq>gcacgagatgggacatgatatgttttcaccatttactgcggcatggatgattgatatgggacctttagtctatcgataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="86" r_length="83" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="159" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99390" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="349" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E279276" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279276" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGT-TATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCA</genome_strand>
        <mrna_strand>CGAGATGGGACATGATATGTTTTCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTCTATCGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337115" ref_strand="+" ref_description="SGN-E337115 [cTOE-7-O20]">
      <seq>aaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggtacttatgtctatgacttacatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcactaaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="30" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="112" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="185" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99391" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="374" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E337115" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTACTTATGTCTATGACTTACATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCACTAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476993" ref_strand="+" ref_description="SGN-E476993 [cSTB-46-J24]">
      <seq>caagaaagcttgaaggaatggccaagactactaatggatttatgggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaaatagtggatcagaagctaatgacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="119" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="192" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="290" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99391" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="381" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E476993" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTC</genome_strand>
        <mrna_strand>ATTTATGGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAATAGTGGATCAGAAGCTAATGACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240720" ref_strand="+" ref_description="SGN-E240720 [cLED-24-C15]">
      <seq>ttctataatttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="47" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="129" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="202" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="300" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99392" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="390" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E240720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACT</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473961" ref_strand="+" ref_description="SGN-E473961 [cSTB-34-E14]">
      <seq>ctaatggatttaaaggacatgatatgttggcaccttttactgcggcatggatgattgatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgtttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagttttttttcacaaatagtggatcataaacttatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="89" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="162" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="261" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99392" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="352" r_length="91" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E473961" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCG-TACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAG-TTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACT</genome_strand>
        <mrna_strand>ATTTAAAGGACATGATATGTTGGCACCTTTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTTCACAAATAGTGGATCATAAACTTATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279105" ref_strand="-" ref_description="SGN-E279105 [cLEL-4-M8](-)">
      <seq>gcacgagatgggacatgatatgtttgcaccatttactgcggcatggatgattgatatgggacctttagtctatcgataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagctaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="86" r_length="83" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="159" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99395" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E279105" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGT-TATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGAC</genome_strand>
        <mrna_strand>CGAGATGGGACATGATATGTTTGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTCTATCGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265692" ref_strand="+" ref_description="SGN-E265692 [cLEI-14-P24]">
      <seq>aaaagcttcaaggaatggccaagactggtggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacctaaatggaaagaagtaccttgattctttatctggtttatggagctcagcattaggggggagagagcctcctcttattgaagctgcaaataaacaactcaataaataggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgccaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatcagaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="31" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="113" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="186" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="284" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99400" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="366" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E265692" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTA</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTGGTGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACCTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGAGCTCAGCATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGAGAGCCTCCTCTTATTGAAGCTGCAAATAAACAACTCAATAAATAGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCCAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205298" ref_strand="+" ref_description="SGN-E205298 [cLEC-25-H18]">
      <seq>ttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggggctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttcacaagtagtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="36" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="191" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99408" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="363" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E205298" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATC</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGGGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473640" ref_strand="+" ref_description="SGN-E473640 [cSTB-32-D6]">
      <seq>attgatatgggaccctttagttatagatagagcggagggttcttatgtctatgaccgtaaatggaaagaagtacccttgattctttatctggtttatggtgcaccagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccatctttggatcttgcaaaggagctcataaatatgtttactgcaaataagatgggaaaagtttttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101443" g_stop="101408" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="113" r_length="76" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="211" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="272" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E473640" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101443" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATGGGA-CCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGA-CGTAAATGGAAAGAAGTA-CCTTGATTCTTTATCTGGTTTATGGTGC-TCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCA</genome_strand>
        <mrna_strand>ATTGATATGGGACCCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACCGTAAATGGAAAGAAGTACCCTTGATTCTTTATCTGGTTTATGGTGCACCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCATCTTTG...............................................................................................................................................................................................................................GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400014" ref_strand="+" ref_description="SGN-E400014 [cSTC-4-C21]">
      <seq>gatatgggacctttagttatagatagagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgcacagtgttagggggaagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccattcattttggaatcgttccacaaaaccttctttggatcttgcgaaggagctcataaattatgtttactgcaaataagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101440" g_stop="101408" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="106" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="204" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99434" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="253" r_length="49" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E400014" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101440" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAA-TATGTTTACTGCAAATAAGATGGGA</genome_strand>
        <mrna_strand>GATATGGGACCTTTAGTTATAGATAGAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCACAGTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCATTCATTTTGGAATCGTTCCACAAAACCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCGAAGGAGCTCATAAATTATGTTTACTGCAAATAAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392290" ref_strand="+" ref_description="SGN-E392290 [TUS-35-E14]">
      <seq>aataaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactctttttggaatcgtaccacaaagccttctttggatcttgcttttgagctcataaatatgtttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="33" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="115" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="188" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="286" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99481" g_stop="99448" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="320" r_length="34" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E392290" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCTTGCAAAGGAGCTCATAAATATGTTTACTG</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCTTTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCTTGCTTTTGAGCTCATAAATATGTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315727" ref_strand="+" ref_description="SGN-E315727 [cTOA-26-O7]">
      <seq>cggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatggtgctcagtattaggggggagtgagcctcgtcttattgaagctgcaaataaacaactcaataaattggcattttaccactcattttggaatcgtaccacaaagccttctttggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="99399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101454" g_stop="101408" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101105" g_stop="101033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="120" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99802" g_stop="99705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="218" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99481" g_stop="99477" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="223" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E315727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101454" e_stop="101408"/>
          <exon e_start="101105" e_stop="101033"/>
          <exon e_start="99802" e_stop="99705"/>
          <exon e_start="99481" e_stop="99477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGTATTTAATTAATTACAATCCTTAATTATTGCATTATTTGATTTTATTGGCTAATTTTGTCATTCATTTGATTTAATTAATTCCACTAGTTTTCTTTTTTGTTGTTTGTCATGATTTCTATATTTAGAGTCAAATTATAAAAACTTTGATTAATATGTTATTTTTATCATATTAATATGTAAAAAATTACAATTTATGTACTTTTCATGTAATTTAAAAATATCTAGTTTTTTTTTTAAATTTTGAATTAATGTGATCTAATTTAACTTTAAATTATTCAAATTGAGTTTCGAAAAGCACAACATGACAAATAATTTTAAACGAAAGATGTATCAATCAAAATAACAATAATATGAAATTAATTCTTGAAATTTGTAAGGACGATAAATTGGATTTAATTTGGGATTTTTGTTGTTTAGCTACTGAATTTTGTATGGTTTGGCAGTTTCTTATTTTCTAATAATGATTACTGAAAAGAATTAATGTCATTGCATCAATAATCGCGAAATTTTTTAATGATATTTATATAAAGTGTTGATTATAATTATATTTATTATTATTGTTAAATATAATAAAAGGACAATTATATTATTATCACTAAATAATTTTTGCTAAATCTTTTATTTATTGTGTTGCAGGTAAAGTAAACTTAGTTAATTAGGAGATTTATTACTAATTTCTCCTTTAATTAGGACCCCATCATGGATGGACCAACCTAATAATTATTTTTTGATAGTTACGTTTGTGGTGTGTTTGATGGAAAGAAACTTTACTTCAATATCCAATATTTTATTAAATTTTAAAATTTATTTTAATTAGAGTAAGAGAAATATATAAGCAAATAAATTCATTTTTCTCTCTTTTATTAATGTTTATAATTTGATTGCTAAAAATGATTTATTTATTTTTAACAAGGATTTTCCTTCATGCCAAATATTTTACTTTGATTGCAACATGTTGAAAGCTATCTTTGATTATTATAGAAAATTACTTTGGCATTTTGTGAAATTCTTGATTGGATTAATAAGTTATATATTGATATTTGTAGATATTATTTTTTATATTATTAAAATATATATTTATACGTTACGATTAGAAGTTAACTTTCACCATAAAAAGTAGAGTTTTTAATCAGATATTTCGAGTTTAAATTTTAAAATTAAAAATTCTTTTTGTAAAATTAATTTTCGTTTAATGAATCTTACCTAATACGAATCTCGATTATCGTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTGGTATAATACTTCTAAATTTAACTATTAATTTATTAATATTACTCCATCAATCCTAAATATATTTATTTTATTTCTCGAGAATTAAATTATATCAATTTCAATATACAATTTAATTACAAAAGTTGATTAATTTGATTCTCGAGAAATAAAATGTAATAAGTATTTTAGGACAGAAGGAGTAGATTTAACCGATTAATTTATTTTATTTTAAAAATAAATACAGGATCT</genome_strand>
        <mrna_strand>CGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG...............................................................................................................................................................................................................................GATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240544" ref_strand="+" ref_description="SGN-E240544 [cLED-21-A2]">
      <seq>tttttcaaaaaagcttcaaggaatggccaagactaatggatttatgggacatgatatgttggcaccatttactgcggcatggatgattgatatgggacctttagttatagataaagcggagggttcttatgtctatgacgtaaatggaaagaagtaccttgattctttatctggtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0131G17-LFFth/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0131G17.1" temp_strand="-" temp_description="C12HBa0131G17.1  AC216292.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0131G17 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="101642" stop="100747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="101614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="39" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101105" g_stop="101047" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="180" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0131G17.1" gen_strand="-" ref_id="SGN-E240544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0131G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="101614"/>
          <exon e_start="101489" e_stop="101408"/>
          <exon e_start="101105" e_stop="101047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAGGAATGGCCAAGACTAATGGGTAAAGTACTCTAAGTCATTCTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGTTAGATTTTGAGTTTATTTTTGTTACGAATTTTAAGTTATATGTATCGTTAGTATAATTTTAATTTTAATTATTTGAGGTATAATTAACTTTTGAATTATGATCGAAATTTAAATAATGCACTTTAATTGACTAAATTAAGGTGATTTGCTGAGTTTCGATCATAATTTAGGAATATTTATGCCTCATCACTTAATTATTTTGTCATTATGAAAATAAAAATATTTTTTAACTTATATTTTGTTGGTTATTTTTAATATTTAAGATATTTATGTTTTTAATATTTGTGTAATTTGTTATAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATG</genome_strand>
        <mrna_strand>AAGCTTCAAGGAATGGCCAAGACTAATGG............................................................................................................................ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG..............................................................................................................................................................................................................................................................................................................GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>216</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7665" PGL_stop="2346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7665" e_stop="7531"/>
            <exon e_start="5650" e_stop="5538"/>
            <exon e_start="4970" e_stop="4899"/>
            <exon e_start="4512" e_stop="4477"/>
            <exon e_start="3832" e_stop="3787"/>
            <exon e_start="3452" e_stop="3365"/>
            <exon e_start="2684" e_stop="2627"/>
            <exon e_start="2509" e_stop="2347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7665" e_stop="7531" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.892">
            <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5650" e_stop="5538" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4970" e_stop="4899" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4512" e_stop="4477" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3832" e_stop="3787" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3365" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2684" e_stop="2627" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.977">
            <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="2509" e_stop="2347" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7665" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7661" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7653" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7638" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7632" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7628" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7585" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7576" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5579" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG : GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG : GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT : GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG : GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG : GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG : GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG : TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGAC</gDNA_template>
            <first_frame> I  Y  *  F  Q  T  K  R  R  N  R  E  E  N  R  E  T  Q  K  W  D  G  S  E  S  K  S  I  R  *  S  Q  F  S  T  D  N  S  *  L  K  Q  S  V  L  :  G  *  L  L  R  Q  H  L  *  Y  G  K  H  *  C  V  *  L  A  A  S  H  L  W  W  L  C  S  L  E  V  W  N  Q  A  L  K  G :   V  T  F  F  S  C  I  *  A  R  T  L  F  V  R  E  K  L  L  C  L  M  L  M :   D  V  K  F  Q  L  F  I  E  *  *  R :   F  T  S  A  K  T  L  E  K  L  T  S  L  Q  K  :  E  T  T  T  L  V  M  T  D  F  Y  M  L  K  V  N  S  G  C  N  V  I  T  S  W  G  E  L  L   : G  S  C  L  M  L  V  G  *  R  *  S  *  P  K  N  Q  L  S  S :   I  Y  *  *  V  H  W  D  C  W  S  S  H  Q  K  I  S  G  Q  W  L  P  S  V  *  L  A  Q  N  *  R  E  T  M  Y  L  P  F  S  R  I  M  T  H  F  W  T  N  R  I  L  F  L  D </first_frame>
            <second_frame>  F  I  D  F  R  P  K  G  E  T  E  K  K  T  E  R  R  K  N  G  M  D  R  R  A  N  R  F  D  K  V  N  S  V  Q  T  T  R  N  S  S  N  Q  S  W :   D  D  C  Y  V  S  T  Y  N  M  E  S  I  D  V  C  N  W  Q  R  V  T  C  G  G  C  A  L  W  K  Y  G  T  R  L  *  K   : G  *  H  S  F  L  A  Y  E  Q  G  P  Y  S  C  G  R  N  C  C  V  *  C  *   : W  T  *  N  S  N  C  S  *  S  N  K   : G  S  R  A  Q  R  H  W  R  S  *  R  P  Y  K  R :   R  Q  Q  L  W  *  *  Q  T  S  I  C  S  R  S  T  L  A  A  T  S  S  H  H  G  E  S  C  W  :  V  L  A  L  C  W  L  G  N  D  N  H  D  R  K  T  N  Y  Q   : V  Y  I  D  R  C  I  G  I  V  G  H  H  I  K  R  L  V  D  N  G  F  L  Q  Y  D  W  H  K  I  R  E  K  L  C  I  C  H  F  Q  E  S  *  L  I  F  G  L  I  E  S  S  F  *   </second_frame>
            <third_frame>   L  L  I  S  D  Q  K  E  K  Q  R  R  K  Q  R  D  A  K  M  G  W  I  G  E  Q  I  D  S  I  K  S  I  Q  Y  R  Q  L  V  T  Q  A  I  S  L   : G  M  I  V  T  S  A  L  I  I  W  K  A  L  M  C  V  T  G  S  E  S  P  V  V  V  V  L  S  G  S  M  E  P  G  F  K  R  :  G  D  I  L  F  L  H  M  S  K  D  P  I  R  A  G  E  I  V  V  F  N  V  D  :  G  R  E  I  P  I  V  H  R  V  I  K  :  V  H  E  R  K  D  T  G  E  V  N  V  L  T  K   : G  D  N  N  F  G  D  D  R  L  L  Y  A  Q  G  Q  L  W  L  Q  R  H  H  I  M  G  R  A  V  G :   F  L  P  Y  V  G  W  V  T  I  I  M  T  E  K  P  I  I  K  :  Y  I  L  I  G  A  L  G  L  L  V  I  T  S  K  D  *  W  T  M  A  S  F  S  M  T  G  T  K  L  E  R  N  Y  V  S  A  I  F  K  N  H  D  S  F  L  D  *  *  N  P  L  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7663" stop="7531"/>
                    <exon start="5650" stop="5538"/>
                    <exon start="4970" stop="4899"/>
                    <exon start="4512" stop="4477"/>
                    <exon start="3832" stop="3787"/>
                    <exon start="3452" stop="3365"/>
                    <exon start="2684" stop="2627"/>
                    <exon start="2509" stop="2459"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLISDQKEKQRRKQRDAKMGWIGEQIDSIKSIQYRQLVTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERKDTGEVNVLTKGDNNFGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7665" e_stop="7531"/>
            <exon e_start="5650" e_stop="5538"/>
            <exon e_start="4970" e_stop="4899"/>
            <exon e_start="4512" e_stop="4477"/>
            <exon e_start="3832" e_stop="3787"/>
            <exon e_start="3452" e_stop="3365"/>
            <exon e_start="2684" e_stop="2627"/>
            <exon e_start="2496" e_stop="2346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7665" e_stop="7531" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.892">
            <gDNA_intron_boundary i_start="7530" i_stop="5651" i_length="1880"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5650" e_stop="5538" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5537" i_stop="4971" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4970" e_stop="4899" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4512" e_stop="4477" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3832" e_stop="3787" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3365" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2684" e_stop="2627" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.857">
            <gDNA_intron_boundary i_start="2626" i_stop="2497" i_length="130"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2496" e_stop="2346" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7665" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7661" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7653" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7647" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2496" stop="2346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7632" stop="7531"/>
              <exon start="5650" stop="5538"/>
              <exon start="4970" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATTGATTTCAGACCAAAAGGAGAAACAGAGAAGAAAACAGAGAGACGCAAAAATGGGATGGATCGGAGAGCAAATCGATTCGATAAAGTCAATTCAGTACAGACAACTCGTAACTCAAGCAATCAGTCTTG : GGATGATTGTTACGTCAGCACTTATAATATGGAAAGCATTGATGTGTGTAACTGGCAGCGAGTCACCTGTGGTGGTTGTGCTCTCTGGAAGTATGGAACCAGGCTTTAAAAGG : GGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT : GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG : GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG : GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG : GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG : GTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGACA</gDNA_template>
            <first_frame> I  Y  *  F  Q  T  K  R  R  N  R  E  E  N  R  E  T  Q  K  W  D  G  S  E  S  K  S  I  R  *  S  Q  F  S  T  D  N  S  *  L  K  Q  S  V  L  :  G  *  L  L  R  Q  H  L  *  Y  G  K  H  *  C  V  *  L  A  A  S  H  L  W  W  L  C  S  L  E  V  W  N  Q  A  L  K  G :   V  T  F  F  S  C  I  *  A  R  T  L  F  V  R  E  K  L  L  C  L  M  L  M :   D  V  K  F  Q  L  F  I  E  *  *  R :   F  T  S  A  K  T  L  E  K  L  T  S  L  Q  K  :  E  T  T  T  L  V  M  T  D  F  Y  M  L  K  V  N  S  G  C  N  V  I  T  S  W  G  E  L  L   : G  S  C  L  M  L  V  G  *  R  *  S  *  P  K  N  Q  L  S  R :   C  I  G  I  V  G  H  H  I  K  R  L  V  D  N  G  F  L  Q  Y  D  W  H  K  I  R  E  K  L  C  I  C  H  F  Q  E  S  *  L  I  F  G  L  I  E  S  S  F  *  T </first_frame>
            <second_frame>  F  I  D  F  R  P  K  G  E  T  E  K  K  T  E  R  R  K  N  G  M  D  R  R  A  N  R  F  D  K  V  N  S  V  Q  T  T  R  N  S  S  N  Q  S  W :   D  D  C  Y  V  S  T  Y  N  M  E  S  I  D  V  C  N  W  Q  R  V  T  C  G  G  C  A  L  W  K  Y  G  T  R  L  *  K   : G  *  H  S  F  L  A  Y  E  Q  G  P  Y  S  C  G  R  N  C  C  V  *  C  *   : W  T  *  N  S  N  C  S  *  S  N  K   : G  S  R  A  Q  R  H  W  R  S  *  R  P  Y  K  R :   R  Q  Q  L  W  *  *  Q  T  S  I  C  S  R  S  T  L  A  A  T  S  S  H  H  G  E  S  C  W  :  V  L  A  L  C  W  L  G  N  D  N  H  D  R  K  T  N  Y  Q   : G  A  L  G  L  L  V  I  T  S  K  D  *  W  T  M  A  S  F  S  M  T  G  T  K  L  E  R  N  Y  V  S  A  I  F  K  N  H  D  S  F  L  D  *  *  N  P  L  S  R   </second_frame>
            <third_frame>   L  L  I  S  D  Q  K  E  K  Q  R  R  K  Q  R  D  A  K  M  G  W  I  G  E  Q  I  D  S  I  K  S  I  Q  Y  R  Q  L  V  T  Q  A  I  S  L   : G  M  I  V  T  S  A  L  I  I  W  K  A  L  M  C  V  T  G  S  E  S  P  V  V  V  V  L  S  G  S  M  E  P  G  F  K  R  :  G  D  I  L  F  L  H  M  S  K  D  P  I  R  A  G  E  I  V  V  F  N  V  D  :  G  R  E  I  P  I  V  H  R  V  I  K  :  V  H  E  R  K  D  T  G  E  V  N  V  L  T  K   : G  D  N  N  F  G  D  D  R  L  L  Y  A  Q  G  Q  L  W  L  Q  R  H  H  I  M  G  R  A  V  G :   F  L  P  Y  V  G  W  V  T  I  I  M  T  E  K  P  I  I  K  :  V  H  W  D  C  W  S  S  H  Q  K  I  S  G  Q  W  L  P  S  V  *  L  A  Q  N  *  R  E  T  M  Y  L  P  F  S  R  I  M  T  H  F  W  T  N  R  I  L  F  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7663" stop="7531"/>
                    <exon start="5650" stop="5538"/>
                    <exon start="4970" stop="4899"/>
                    <exon start="4512" stop="4477"/>
                    <exon start="3832" stop="3787"/>
                    <exon start="3452" stop="3365"/>
                    <exon start="2684" stop="2627"/>
                    <exon start="2496" stop="2434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLISDQKEKQRRKQRDAKMGWIGEQIDSIKSIQYRQLVTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERKDTGEVNVLTKGDNNFGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKVHWDCWSSHQKISGQWLPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4973" e_stop="4899"/>
            <exon e_start="4512" e_stop="4477"/>
            <exon e_start="3832" e_stop="3787"/>
            <exon e_start="3452" e_stop="3365"/>
            <exon e_start="2684" e_stop="2627"/>
            <exon e_start="2509" e_stop="2347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="0.920"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="0.966"/>
          <exon-intron don_prob="0.985" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="4973" e_stop="4899" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4898" i_stop="4513" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4512" e_stop="4477" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4476" i_stop="3833" i_length="644"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3832" e_stop="3787" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3786" i_stop="3453" i_length="334"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="3452" e_stop="3365" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3364" i_stop="2685" i_length="680"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2684" e_stop="2627" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.977">
            <gDNA_intron_boundary i_start="2626" i_stop="2510" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="2509" e_stop="2347" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4973" stop="4899"/>
              <exon start="4512" stop="4477"/>
              <exon start="3832" stop="3787"/>
              <exon start="3452" stop="3365"/>
              <exon start="2684" stop="2627"/>
              <exon start="2509" stop="2347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344009" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGTGACATTCTTTTCTTGCATATGAGCAAGGACCCTATTCGTGCGGGAGAAATTGTTGTGTTTAATGTTGAT : GGACGTGAAATTCCAATTGTTCATAGAGTAATAAAG : GTTCACGAGCGCAAAGACACTGGAGAAGTTAACGTCCTTACAAAAG : GAGACAACAACTTTGGTGATGACAGACTTCTATATGCTCAAGGTCAACTCTGGCTGCAACGTCATCACATCATGGGGAGAGCTGTTGG : GTTCTTGCCTTATGTTGGTTGGGTAACGATAATCATGACCGAAAAACCAATTATCAAG : TATATATTGATAGGTGCATTGGGATTGTTGGTCATCACATCAAAAGATTAGTGGACAATGGCTTCCTTCAGTATGACTGGCACAAAATTAGAGAGAAACTATGTATCTGCCATTTTCAAGAATCATGACTCATTTTTGGACTAATAGAATCCTCTTTCTAGAC</gDNA_template>
            <first_frame> Q  G  D  I  L  F  L  H  M  S  K  D  P  I  R  A  G  E  I  V  V  F  N  V  D  :  G  R  E  I  P  I  V  H  R  V  I  K  :  V  H  E  R  K  D  T  G  E  V  N  V  L  T  K   : G  D  N  N  F  G  D  D  R  L  L  Y  A  Q  G  Q  L  W  L  Q  R  H  H  I  M  G  R  A  V  G :   F  L  P  Y  V  G  W  V  T  I  I  M  T  E  K  P  I  I  K  :  Y  I  L  I  G  A  L  G  L  L  V  I  T  S  K  D  *  W  T  M  A  S  F  S  M  T  G  T  K  L  E  R  N  Y  V  S  A  I  F  K  N  H  D  S  F  L  D  *  *  N  P  L  S  R  </first_frame>
            <second_frame>  R  V  T  F  F  S  C  I  *  A  R  T  L  F  V  R  E  K  L  L  C  L  M  L  M :   D  V  K  F  Q  L  F  I  E  *  *  R :   F  T  S  A  K  T  L  E  K  L  T  S  L  Q  K  :  E  T  T  T  L  V  M  T  D  F  Y  M  L  K  V  N  S  G  C  N  V  I  T  S  W  G  E  L  L   : G  S  C  L  M  L  V  G  *  R  *  S  *  P  K  N  Q  L  S  S :   I  Y  *  *  V  H  W  D  C  W  S  S  H  Q  K  I  S  G  Q  W  L  P  S  V  *  L  A  Q  N  *  R  E  T  M  Y  L  P  F  S  R  I  M  T  H  F  W  T  N  R  I  L  F  L  D </second_frame>
            <third_frame>   G  *  H  S  F  L  A  Y  E  Q  G  P  Y  S  C  G  R  N  C  C  V  *  C  *   : W  T  *  N  S  N  C  S  *  S  N  K   : G  S  R  A  Q  R  H  W  R  S  *  R  P  Y  K  R :   R  Q  Q  L  W  *  *  Q  T  S  I  C  S  R  S  T  L  A  A  T  S  S  H  H  G  E  S  C  W  :  V  L  A  L  C  W  L  G  N  D  N  H  D  R  K  T  N  Y  Q   : V  Y  I  D  R  C  I  G  I  V  G  H  H  I  K  R  L  V  D  N  G  F  L  Q  Y  D  W  H  K  I  R  E  K  L  C  I  C  H  F  Q  E  S  *  L  I  F  G  L  I  E  S  S  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4973" stop="4899"/>
                    <exon start="4512" stop="4477"/>
                    <exon start="3832" stop="3787"/>
                    <exon start="3452" stop="3365"/>
                    <exon start="2684" stop="2627"/>
                    <exon start="2509" stop="2459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERKDTGEVNVLTKGDNNFGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13769" PGL_stop="9255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13769" e_stop="13680"/>
            <exon e_start="13491" e_stop="13294"/>
            <exon e_start="13005" e_stop="12921"/>
            <exon e_start="12841" e_stop="12675"/>
            <exon e_start="12516" e_stop="12328"/>
            <exon e_start="12229" e_stop="12116"/>
            <exon e_start="12019" e_stop="11900"/>
            <exon e_start="11818" e_stop="11696"/>
            <exon e_start="11599" e_stop="11501"/>
            <exon e_start="11375" e_stop="11319"/>
            <exon e_start="11225" e_stop="11179"/>
            <exon e_start="11094" e_stop="10951"/>
            <exon e_start="10869" e_stop="10692"/>
            <exon e_start="10242" e_stop="10078"/>
            <exon e_start="9524" e_stop="9255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.708" e_score="0.978"/>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.958" acc_prob="0.738" e_score="0.988"/>
          <exon-intron don_prob="0.952" acc_prob="0.913" e_score="0.976"/>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.392" e_score="0.991"/>
          <exon-intron don_prob="0.986" acc_prob="0.569" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="13769" e_stop="13680" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.708">
            <gDNA_intron_boundary i_start="13679" i_stop="13492" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="13491" e_stop="13294" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13293" i_stop="13006" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="13005" e_stop="12921" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.738">
            <gDNA_intron_boundary i_start="12920" i_stop="12842" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="12841" e_stop="12675" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.913">
            <gDNA_intron_boundary i_start="12674" i_stop="12517" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="12516" e_stop="12328" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12327" i_stop="12230" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="12229" e_stop="12116" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.937" acc_prob="0.392">
            <gDNA_intron_boundary i_start="12115" i_stop="12020" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="12019" e_stop="11900" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.569">
            <gDNA_intron_boundary i_start="11899" i_stop="11819" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11818" e_stop="11696" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.889">
            <gDNA_intron_boundary i_start="11695" i_stop="11600" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11599" e_stop="11501" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="11500" i_stop="11376" i_length="125"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11375" e_stop="11319" e_length="57"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11318" i_stop="11226" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="11225" e_stop="11179" e_length="47"/>
          </exon>
          <intron i_serial="11" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="11178" i_stop="11095" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="11094" e_stop="10951" e_length="144"/>
          </exon>
          <intron i_serial="12" don_prob="0.977" acc_prob="0.936">
            <gDNA_intron_boundary i_start="10950" i_stop="10870" i_length="81"/>
          </intron>
          <exon e_serial="13" e_score="0.994">
            <gDNA_exon_boundary e_start="10869" e_stop="10692" e_length="178"/>
          </exon>
          <intron i_serial="13" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10691" i_stop="10243" i_length="449"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="10242" e_stop="10078" e_length="165"/>
          </exon>
          <intron i_serial="14" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10077" i_stop="9525" i_length="553"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="9524" e_stop="9255" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13769" stop="13680"/>
              <exon start="13491" stop="13294"/>
              <exon start="13005" stop="12921"/>
              <exon start="12841" stop="12675"/>
              <exon start="12516" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12766" stop="12675"/>
              <exon start="12516" stop="12328"/>
              <exon start="12229" stop="12116"/>
              <exon start="12019" stop="11900"/>
              <exon start="11818" stop="11696"/>
              <exon start="11599" stop="11501"/>
              <exon start="11375" stop="11319"/>
              <exon start="11225" stop="11179"/>
              <exon start="11094" stop="11048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11981" stop="11900"/>
              <exon start="11818" stop="11696"/>
              <exon start="11599" stop="11501"/>
              <exon start="11375" stop="11319"/>
              <exon start="11225" stop="11179"/>
              <exon start="11094" stop="10951"/>
              <exon start="10869" stop="10751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11981" stop="11900"/>
              <exon start="11818" stop="11696"/>
              <exon start="11599" stop="11501"/>
              <exon start="11375" stop="11319"/>
              <exon start="11225" stop="11179"/>
              <exon start="11094" stop="10951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11981" stop="11900"/>
              <exon start="11818" stop="11696"/>
              <exon start="11599" stop="11501"/>
              <exon start="11375" stop="11319"/>
              <exon start="11225" stop="11179"/>
              <exon start="11094" stop="10963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11081" stop="10951"/>
              <exon start="10869" stop="10692"/>
              <exon start="10242" stop="10078"/>
              <exon start="9524" stop="9255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGTGTATGTATATCACTGGGCATCTTAATACTGTATTCCCAGCTGAGCATCGAAAGGAAATTCTTCGGTATATATACTGTCATCAG : AACGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTCTGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGATGGCGGTGTAAATAATGCGTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCACCGCAATTCCTTCGTGGGGAAAAACATGGCTCTCG : ATTCTTGGAGTTTTTGAATGGATAGGAACCAATCCAATGCCACCTGAGTTTTGGATTCTTCCATCTTTTCTTCCCGTGCATCCAG : CAAAAATGTGGTGTTACTGTCGAATGGTCTACATGCCGATGTCTTACCTCTATGGGAAGAGATTCGTTGGTCCAATCACGCCTCTCATTTTGCAACTAAGGGAAGAGTTATATGATCGACCATACGATGAAATTAACTGGAAGAAAGTGCGCCATGTATGTGCAAAG : GAGGATCTTTATTACCCTCATCCGTTGGTTCAAGATTTGATGTGGGATAGTCTCTACATATGTACCGAGCCTTTGTTGACCCGTTGGCCTTTCAACAAGCTGAGAAACAAAGCTCTTGAAGTTACCATGAAACACATACACTATGAAGACGAGAATAGTCGATACATCACCATCGGATGTGTCGAAAAA : GTATTGTGCATGCTTGCTTGTTGGGTCGAGGATCCTAACGGCGATTATTTCAAAAAACATCTTGCTAGGATCTCTGATTATTTATGGGTAGCTGAAGATGGAATGAAAATGCAG : AGTTTCGGTAGTCAAGAATGGGATACTGGTTTTGCTATCCAAGCACTATTGGCCAGTGAGATGAATGATGAGATAGCAGATACGCTTAGAAAAGGACATGACTTTATAAAACAATCTCAG : GTGACGAACAATCCGTCTGGTGATTTCAAAGGAATGTATCGACATATCTCAAAAGGATCATGGACTTTTTCAGATCAAGATCATGGATGGCAAGTCTCTGATTGCACTGCTGAAGCATTAAAG : TGCTGCCTTCTGTTGTCTACAATGCCTCGTGAATTAGTCGGTCAGGCAATGGAGCCAGGGCGATTGTATGACTCGGTGAATGTTATTCTTTCATTACAG : AGCAAAAATGGCGGTTTAGCAGCATGGGAACCTGCAGGAGCCTCCGAGTATTTGGAG : CTGCTGAATCCTACTGAATTTTTCGCGGACATTGTCATTGAGCACGA : GTACGTCGAATGCACTGCCTCATCAATTCAAGCACTTGTTCTGTTTAAGAAGCTGTATCCCGGACACAGAACCAAGGAGATTAACATATTCATTGATAATGCTGTTAAATATCTTGAAGATGTACAAATGCCTGATGGTTCATG : GTATGGTAACTGGGGTGTTTGCTTCACATATGGTTCCTGGTTTGCTCTTGGAGGGCTTGTTGCAGCAGGCAAGTCCTACAACAACTCTGCAGCTGTTCGTAAAGGCGTTGAATTTCTGCTAAGAACACAAAGATCCGATGGTGGTTGGGGCGAAAGCTACCGTTCTTGCCCAGACAAG : GTATATAGAGAACTCGAAACAAATGACTCAAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGACAGGCTGATAGAGATCCGAAACCCCTTCACCGTGCAGCAAAGTTGTTGATCAATTCTCAGATGGAAGATGGTGACTTCCCACAGCAG : GAAATTACTGGAGTTTTTATGAAGAATTGCATGTTGCATTATGCAGCATACAGAAATATATATCCATTATGGGGTTTGGCTGAATACCGCAAAAATGTATTATTACCATTAGAAAACAACTAAATATATATAATTTTTCGATATAGAGTGCAATTTGGTCCTTTTTTTTTTTGGTGTTAATGTGAGTGATGTAACAAAAGTAAAAATTCATAGCCTAAGTTAATTTTATTATTTTGTATTACATAATTTGTGAATAAAGAAAGTTACATA</gDNA_template>
            <first_frame> V  M  C  M  Y  I  T  G  H  L  N  T  V  F  P  A  E  H  R  K  E  I  L  R  Y  I  Y  C  H  Q  :  N  E  D  G  G  W  G  L  H  I  E  G  H  S  T  M  F  C  T  A  L  S  Y  I  C  M  R  I  L  G  E  G  P  D  G  G  V  N  N  A  C  A  R  A  R  K  W  I  L  D  H  G  S  V  T  A  I  P  S  W  G  K  T  W  L  S  :  I  L  G  V  F  E  W  I  G  T  N  P  M  P  P  E  F  W  I  L  P  S  F  L  P  V  H  P   : A  K  M  W  C  Y  C  R  M  V  Y  M  P  M  S  Y  L  Y  G  K  R  F  V  G  P  I  T  P  L  I  L  Q  L  R  E  E  L  Y  D  R  P  Y  D  E  I  N  W  K  K  V  R  H  V  C  A  K  :  E  D  L  Y  Y  P  H  P  L  V  Q  D  L  M  W  D  S  L  Y  I  C  T  E  P  L  L  T  R  W  P  F  N  K  L  R  N  K  A  L  E  V  T  M  K  H  I  H  Y  E  D  E  N  S  R  Y  I  T  I  G  C  V  E  K  :  V  L  C  M  L  A  C  W  V  E  D  P  N  G  D  Y  F  K  K  H  L  A  R  I  S  D  Y  L  W  V  A  E  D  G  M  K  M  Q  :  S  F  G  S  Q  E  W  D  T  G  F  A  I  Q  A  L  L  A  S  E  M  N  D  E  I  A  D  T  L  R  K  G  H  D  F  I  K  Q  S  Q  :  V  T  N  N  P  S  G  D  F  K  G  M  Y  R  H  I  S  K  G  S  W  T  F  S  D  Q  D  H  G  W  Q  V  S  D  C  T  A  E  A  L  K  :  C  C  L  L  L  S  T  M  P  R  E  L  V  G  Q  A  M  E  P  G  R  L  Y  D  S  V  N  V  I  L  S  L  Q  :  S  K  N  G  G  L  A  A  W  E  P  A  G  A  S  E  Y  L  E  :  L  L  N  P  T  E  F  F  A  D  I  V  I  E  H  E :   Y  V  E  C  T  A  S  S  I  Q  A  L  V  L  F  K  K  L  Y  P  G  H  R  T  K  E  I  N  I  F  I  D  N  A  V  K  Y  L  E  D  V  Q  M  P  D  G  S  W :   Y  G  N  W  G  V  C  F  T  Y  G  S  W  F  A  L  G  G  L  V  A  A  G  K  S  Y  N  N  S  A  A  V  R  K  G  V  E  F  L  L  R  T  Q  R  S  D  G  G  W  G  E  S  Y  R  S  C  P  D  K  :  V  Y  R  E  L  E  T  N  D  S  N  L  V  Q  T  A  W  A  L  M  G  L  I  H  S  G  Q  A  D  R  D  P  K  P  L  H  R  A  A  K  L  L  I  N  S  Q  M  E  D  G  D  F  P  Q  Q  :  E  I  T  G  V  F  M  K  N  C  M  L  H  Y  A  A  Y  R  N  I  Y  P  L  W  G  L  A  E  Y  R  K  N  V  L  L  P  L  E  N  N  *  I  Y  I  I  F  R  Y  R  V  Q  F  G  P  F  F  F  W  C  *  C  E  *  C  N  K  S  K  N  S  *  P  K  L  I  L  L  F  C  I  T  *  F  V  N  K  E  S  Y  I </first_frame>
            <second_frame>  L  C  V  C  I  S  L  G  I  L  I  L  Y  S  Q  L  S  I  E  R  K  F  F  G  I  Y  T  V  I  R :   T  K  M  V  D  G  V  C  T  *  K  V  T  V  L  C  S  V  Q  L  *  V  T  F  A  *  G  S  L  E  K  D  Q  M  A  V  *  I  M  R  V  L  E  Q  G  N  G  F  L  I  M  V  V  S  P  Q  F  L  R  G  E  K  H  G  S  R :   F  L  E  F  L  N  G  *  E  P  I  Q  C  H  L  S  F  G  F  F  H  L  F  F  P  C  I  Q  :  Q  K  C  G  V  T  V  E  W  S  T  C  R  C  L  T  S  M  G  R  D  S  L  V  Q  S  R  L  S  F  C  N  *  G  K  S  Y  M  I  D  H  T  M  K  L  T  G  R  K  C  A  M  Y  V  Q  R :   R  I  F  I  T  L  I  R  W  F  K  I  *  C  G  I  V  S  T  Y  V  P  S  L  C  *  P  V  G  L  S  T  S  *  E  T  K  L  L  K  L  P  *  N  T  Y  T  M  K  T  R  I  V  D  T  S  P  S  D  V  S  K  K :   Y  C  A  C  L  L  V  G  S  R  I  L  T  A  I  I  S  K  N  I  L  L  G  S  L  I  I  Y  G  *  L  K  M  E  *  K  C  R :   V  S  V  V  K  N  G  I  L  V  L  L  S  K  H  Y  W  P  V  R  *  M  M  R  *  Q  I  R  L  E  K  D  M  T  L  *  N  N  L  R :   *  R  T  I  R  L  V  I  S  K  E  C  I  D  I  S  Q  K  D  H  G  L  F  Q  I  K  I  M  D  G  K  S  L  I  A  L  L  K  H  *  S :   A  A  F  C  C  L  Q  C  L  V  N  *  S  V  R  Q  W  S  Q  G  D  C  M  T  R  *  M  L  F  F  H  Y  R :   A  K  M  A  V  *  Q  H  G  N  L  Q  E  P  P  S  I  W  S :   C  *  I  L  L  N  F  S  R  T  L  S  L  S  T   : S  T  S  N  A  L  P  H  Q  F  K  H  L  F  C  L  R  S  C  I  P  D  T  E  P  R  R  L  T  Y  S  L  I  M  L  L  N  I  L  K  M  Y  K  C  L  M  V  H   : G  M  V  T  G  V  F  A  S  H  M  V  P  G  L  L  L  E  G  L  L  Q  Q  A  S  P  T  T  T  L  Q  L  F  V  K  A  L  N  F  C  *  E  H  K  D  P  M  V  V  G  A  K  A  T  V  L  A  Q  T  R :   Y  I  E  N  S  K  Q  M  T  Q  I  L  Y  K  L  H  G  H  *  W  D  *  F  T  L  D  R  L  I  E  I  R  N  P  F  T  V  Q  Q  S  C  *  S  I  L  R  W  K  M  V  T  S  H  S  R :   K  L  L  E  F  L  *  R  I  A  C  C  I  M  Q  H  T  E  I  Y  I  H  Y  G  V  W  L  N  T  A  K  M  Y  Y  Y  H  *  K  T  T  K  Y  I  *  F  F  D  I  E  C  N  L  V  L  F  F  F  G  V  N  V  S  D  V  T  K  V  K  I  H  S  L  S  *  F  Y  Y  F  V  L  H  N  L  *  I  K  K  V  T   </second_frame>
            <third_frame>   Y  V  Y  V  Y  H  W  A  S  *  Y  C  I  P  S  *  A  S  K  G  N  S  S  V  Y  I  L  S  S   : E  R  R  W  W  M  G  F  A  H  R  R  S  Q  Y  Y  V  L  Y  S  S  E  L  H  L  H  E  D  P  W  R  R  T  R  W  R  C  K  *  C  V  C  *  S  K  E  M  D  S  *  S  W  *  C  H  R  N  S  F  V  G  K  N  M  A  L   : D  S  W  S  F  *  M  D  R  N  Q  S  N  A  T  *  V  L  D  S  S  I  F  S  S  R  A  S  S :   K  N  V  V  L  L  S  N  G  L  H  A  D  V  L  P  L  W  E  E  I  R  W  S  N  H  A  S  H  F  A  T  K  G  R  V  I  *  S  T  I  R  *  N  *  L  E  E  S  A  P  C  M  C  K   : G  G  S  L  L  P  S  S  V  G  S  R  F  D  V  G  *  S  L  H  M  Y  R  A  F  V  D  P  L  A  F  Q  Q  A  E  K  Q  S  S  *  S  Y  H  E  T  H  T  L  *  R  R  E  *  S  I  H  H  H  R  M  C  R  K   : S  I  V  H  A  C  L  L  G  R  G  S  *  R  R  L  F  Q  K  T  S  C  *  D  L  *  L  F  M  G  S  *  R  W  N  E  N  A   : E  F  R  *  S  R  M  G  Y  W  F  C  Y  P  S  T  I  G  Q  *  D  E  *  *  D  S  R  Y  A  *  K  R  T  *  L  Y  K  T  I  S   : G  D  E  Q  S  V  W  *  F  Q  R  N  V  S  T  Y  L  K  R  I  M  D  F  F  R  S  R  S  W  M  A  S  L  *  L  H  C  *  S  I  K   : V  L  P  S  V  V  Y  N  A  S  *  I  S  R  S  G  N  G  A  R  A  I  V  *  L  G  E  C  Y  S  F  I  T   : E  Q  K  W  R  F  S  S  M  G  T  C  R  S  L  R  V  F  G   : A  A  E  S  Y  *  I  F  R  G  H  C  H  *  A  R  :  V  R  R  M  H  C  L  I  N  S  S  T  C  S  V  *  E  A  V  S  R  T  Q  N  Q  G  D  *  H  I  H  *  *  C  C  *  I  S  *  R  C  T  N  A  *  W  F  M  :  V  W  *  L  G  C  L  L  H  I  W  F  L  V  C  S  W  R  A  C  C  S  R  Q  V  L  Q  Q  L  C  S  C  S  *  R  R  *  I  S  A  K  N  T  K  I  R  W  W  L  G  R  K  L  P  F  L  P  R  Q   : G  I  *  R  T  R  N  K  *  L  K  S  C  T  N  C  M  G  I  D  G  I  D  S  L  W  T  G  *  *  R  S  E  T  P  S  P  C  S  K  V  V  D  Q  F  S  D  G  R  W  *  L  P  T  A   : G  N  Y  W  S  F  Y  E  E  L  H  V  A  L  C  S  I  Q  K  Y  I  S  I  M  G  F  G  *  I  P  Q  K  C  I  I  T  I  R  K  Q  L  N  I  Y  N  F  S  I  *  S  A  I  W  S  F  F  F  L  V  L  M  *  V  M  *  Q  K  *  K  F  I  A  *  V  N  F  I  I  L  Y  Y  I  I  C  E  *  R  K  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13769" stop="13680"/>
                    <exon start="13491" stop="13294"/>
                    <exon start="13005" stop="12921"/>
                    <exon start="12841" stop="12675"/>
                    <exon start="12516" stop="12328"/>
                    <exon start="12229" stop="12116"/>
                    <exon start="12019" stop="11900"/>
                    <exon start="11818" stop="11696"/>
                    <exon start="11599" stop="11501"/>
                    <exon start="11375" stop="11319"/>
                    <exon start="11225" stop="11179"/>
                    <exon start="11094" stop="10951"/>
                    <exon start="10869" stop="10692"/>
                    <exon start="10242" stop="10078"/>
                    <exon start="9524" stop="9402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMCMYITGHLNTVFPAEHRKEILRYIYCHQNEDGGWGLHIEGHSTMFCTALSYICMRILGEGPDGGVNNACARARKWILDHGSVTAIPSWGKTWLSILGVFEWIGTNPMPPEFWILPSFLPVHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYDRPYDEINWKKVRHVCAKEDLYYPHPLVQDLMWDSLYICTEPLLTRWPFNKLRNKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARISDYLWVAEDGMKMQSFGSQEWDTGFAIQALLASEMNDEIADTLRKGHDFIKQSQVTNNPSGDFKGMYRHISKGSWTFSDQDHGWQVSDCTAEALKCCLLLSTMPRELVGQAMEPGRLYDSVNVILSLQSKNGGLAAWEPAGASEYLELLNPTEFFADIVIEHEYVECTASSIQALVLFKKLYPGHRTKEINIFIDNAVKYLEDVQMPDGSWYGNWGVCFTYGSWFALGGLVAAGKSYNNSAAVRKGVEFLLRTQRSDGGWGESYRSCPDKVYRELETNDSNLVQTAWALMGLIHSGQADRDPKPLHRAAKLLINSQMEDGDFPQQEITGVFMKNCMLHYAAYRNIYPLWGLAEYRKNVLLPLENN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17798" PGL_stop="14546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17798" e_stop="17152"/>
            <exon e_start="14614" e_stop="14546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="0.923"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="17798" e_stop="17152" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17151" i_stop="14615" i_length="2537"/>
          </intron>
          <exon e_serial="2" e_score="0.826">
            <gDNA_exon_boundary e_start="14614" e_stop="14546" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17798" stop="17152"/>
              <exon start="14614" stop="14546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTTTTTGACCTTGCTTATACCAAACTTTATAATCCTACTTTTAAATATATTTTTTTGTTATTGCTTTATACCCAAATTCCTCCAATTTAAATACTATAATGAGTCTTTAACATAAAAAAATAAAATAAAGTTCATCCGAATTTATTGTTCATTCCCTTTATACCTTACACACTTTCAGCATAAACTCCCTCTTATTATTTAAGTAAAATTTCACTCATTTTATTTCCTATCTCCAACAACTCTACATATAATTATCCTAGTAAGTATATATGCAATTTTCCCTTCTTCATTACTTTTTTTTTTTTTATCGAGTCTTCTGAAACGATTTCTCTATCGTGTAAAGACAGATAAAATACGTAAGGGCAACATATATTTCAAATTTCATATATTTTATTGTTGAGGTGGTAGACGTTAAGAGTTCATTCGAACATTCGATTAAAGGATGTGGAAATTGAAAATTGCTGAAGGGCAAAATGGTCCATATTTGTATAGTACAAATAACTATGTTGGAAGACAAACGTGGGAGTTCGATCCAAATGGTGGAACGATAGAAGAACGGGCTAAGATAGAAGAGGCTCGAAAACAATTTTGGAATAATCGTTATAAAGTCAAGCCTAGTAGTGATCTTCTTTGGCGGATACAG : TTTCTTGGAGAGAAAAATTTCAAACAAAAAATTCCAGCAGTAAAAGTTGAAGAAGGTGAAGAAATTAGC</gDNA_template>
            <first_frame> I  I  F  *  P  C  L  Y  Q  T  L  *  S  Y  F  *  I  Y  F  F  V  I  A  L  Y  P  N  S  S  N  L  N  T  I  M  S  L  *  H  K  K  I  K  *  S  S  S  E  F  I  V  H  S  L  Y  T  L  H  T  F  S  I  N  S  L  L  L  F  K  *  N  F  T  H  F  I  S  Y  L  Q  Q  L  Y  I  *  L  S  *  *  V  Y  M  Q  F  S  L  L  H  Y  F  F  F  F  Y  R  V  F  *  N  D  F  S  I  V  *  R  Q  I  K  Y  V  R  A  T  Y  I  S  N  F  I  Y  F  I  V  E  V  V  D  V  K  S  S  F  E  H  S  I  K  G  C  G  N  *  K  L  L  K  G  K  M  V  H  I  C  I  V  Q  I  T  M  L  E  D  K  R  G  S  S  I  Q  M  V  E  R  *  K  N  G  L  R  *  K  R  L  E  N  N  F  G  I  I  V  I  K  S  S  L  V  V  I  F  F  G  G  Y  S :   F  L  E  R  K  I  S  N  K  K  F  Q  Q  *  K  L  K  K  V  K  K  L   </first_frame>
            <second_frame>  *  F  F  D  L  A  Y  T  K  L  Y  N  P  T  F  K  Y  I  F  L  L  L  L  Y  T  Q  I  P  P  I  *  I  L  *  *  V  F  N  I  K  K  *  N  K  V  H  P  N  L  L  F  I  P  F  I  P  Y  T  L  S  A  *  T  P  S  Y  Y  L  S  K  I  S  L  I  L  F  P  I  S  N  N  S  T  Y  N  Y  P  S  K  Y  I  C  N  F  P  F  F  I  T  F  F  F  F  I  E  S  S  E  T  I  S  L  S  C  K  D  R  *  N  T  *  G  Q  H  I  F  Q  I  S  Y  I  L  L  L  R  W  *  T  L  R  V  H  S  N  I  R  L  K  D  V  E  I  E  N  C  *  R  A  K  W  S  I  F  V  *  Y  K  *  L  C  W  K  T  N  V  G  V  R  S  K  W  W  N  D  R  R  T  G  *  D  R  R  G  S  K  T  I  L  E  *  S  L  *  S  Q  A  *  *  *  S  S  L  A  D  T   : V  S  W  R  E  K  F  Q  T  K  N  S  S  S  K  S  *  R  R  *  R  N  *  </second_frame>
            <third_frame>   N  F  L  T  L  L  I  P  N  F  I  I  L  L  L  N  I  F  F  C  Y  C  F  I  P  K  F  L  Q  F  K  Y  Y  N  E  S  L  T  *  K  N  K  I  K  F  I  R  I  Y  C  S  F  P  L  Y  L  T  H  F  Q  H  K  L  P  L  I  I  *  V  K  F  H  S  F  Y  F  L  S  P  T  T  L  H  I  I  I  L  V  S  I  Y  A  I  F  P  S  S  L  L  F  F  F  L  S  S  L  L  K  R  F  L  Y  R  V  K  T  D  K  I  R  K  G  N  I  Y  F  K  F  H  I  F  Y  C  *  G  G  R  R  *  E  F  I  R  T  F  D  *  R  M  W  K  L  K  I  A  E  G  Q  N  G  P  Y  L  Y  S  T  N  N  Y  V  G  R  Q  T  W  E  F  D  P  N  G  G  T  I  E  E  R  A  K  I  E  E  A  R  K  Q  F  W  N  N  R  Y  K  V  K  P  S  S  D  L  L  W  R  I  Q  :  F  L  G  E  K  N  F  K  Q  K  I  P  A  V  K  V  E  E  G  E  E  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17355" stop="17152"/>
                    <exon start="14614" stop="14546"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMWKLKIAEGQNGPYLYSTNNYVGRQTWEFDPNGGTIEERAKIEEARKQFWNNRYKVKPSSDLLWRIQFLGEKNFKQKIPAVKVEEGEEIS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17592" stop="17395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKFHSFYFLSPTTLHIIILVSIYAIFPSSLLFFFLSSLLKRFLYRVKTDKIRKGNIYFKFHIFYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24007" PGL_stop="22255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24007" e_stop="23958"/>
            <exon e_start="22926" e_stop="22671"/>
            <exon e_start="22425" e_stop="22255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.957"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="24007" e_stop="23958" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="23957" i_stop="22927" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="22926" e_stop="22671" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22670" i_stop="22426" i_length="245"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="22425" e_stop="22255" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24007" stop="23958"/>
              <exon start="22926" stop="22671"/>
              <exon start="22425" stop="22255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24003" stop="23958"/>
              <exon start="22926" stop="22671"/>
              <exon start="22425" stop="22264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCTGTTAATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAG : GAGATAACTGGTGTTTTCTTGAGGAATTGCATGATGCACTATGCATTATATAGGAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAGGAATGTCTTAGTACCATTAAAACACAACTACATATAGAGAATGCAATTTGGGCCTTCCGCGGATTCCGTATATAGCGGGAGCTTAGTGAATCGAGTTGTCCGTTGTTTGTTTTTTGTGTTAATGTAAGTGATCACCCAAGTAGTGGTTAGATATGACTATGATC : GACCCTTAATCAAATGGTTCGGATTCGAGCCTCGAGGATGGAAAGAATCTTGATATGATATGCTTCCTCCTTTAGGGTTCTACATAGGGGATCTACATGAATCCAATGTATACATTACTCATGAATCTACTAAACATCTATTGATATTTGTTTGTAAGCTCAATTATTATT</gDNA_template>
            <first_frame> Q  S  C  *  L  I  L  R  W  K  M  V  T  S  H  N  R :   R  *  L  V  F  S  *  G  I  A  *  C  T  M  H  Y  I  G  I  Y  F  H  C  G  V  W  L  N  T  A  G  M  S  *  Y  H  *  N  T  T  T  Y  R  E  C  N  L  G  L  P  R  I  P  Y  I  A  G  A  *  *  I  E  L  S  V  V  C  F  L  C  *  C  K  *  S  P  K  *  W  L  D  M  T  M  I  :  D  P  *  S  N  G  S  D  S  S  L  E  D  G  K  N  L  D  M  I  C  F  L  L  *  G  S  T  *  G  I  Y  M  N  P  M  Y  T  L  L  M  N  L  L  N  I  Y  *  Y  L  F  V  S  S  I  I  I </first_frame>
            <second_frame>  K  A  V  N  *  F  S  D  G  R  W  *  L  P  T  T   : G  D  N  W  C  F  L  E  E  L  H  D  A  L  C  I  I  *  E  Y  I  S  I  V  G  F  G  *  I  P  Q  E  C  L  S  T  I  K  T  Q  L  H  I  E  N  A  I  W  A  F  R  G  F  R  I  *  R  E  L  S  E  S  S  C  P  L  F  V  F  C  V  N  V  S  D  H  P  S  S  G  *  I  *  L  *  S :   T  L  N  Q  M  V  R  I  R  A  S  R  M  E  R  I  L  I  *  Y  A  S  S  F  R  V  L  H  R  G  S  T  *  I  Q  C  I  H  Y  S  *  I  Y  *  T  S  I  D  I  C  L  *  A  Q  L  L   </second_frame>
            <third_frame>   K  L  L  I  N  S  Q  M  E  D  G  D  F  P  Q  Q  :  E  I  T  G  V  F  L  R  N  C  M  M  H  Y  A  L  Y  R  N  I  F  P  L  W  G  L  A  E  Y  R  R  N  V  L  V  P  L  K  H  N  Y  I  *  R  M  Q  F  G  P  S  A  D  S  V  Y  S  G  S  L  V  N  R  V  V  R  C  L  F  F  V  L  M  *  V  I  T  Q  V  V  V  R  Y  D  Y  D   : R  P  L  I  K  W  F  G  F  E  P  R  G  W  K  E  S  *  Y  D  M  L  P  P  L  G  F  Y  I  G  D  L  H  E  S  N  V  Y  I  T  H  E  S  T  K  H  L  L  I  F  V  C  K  L  N  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0131G17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31912" PGL_stop="27291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31912" e_stop="31884"/>
            <exon e_start="31171" e_stop="30954"/>
            <exon e_start="28561" e_stop="28376"/>
            <exon e_start="28303" e_stop="28214"/>
            <exon e_start="27466" e_stop="27291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.925" e_score="0.931"/>
          <exon-intron don_prob="0.359" acc_prob="0.790" e_score="0.821"/>
          <exon-intron don_prob="0.997" acc_prob="0.795" e_score="0.930"/>
          <exon-intron don_prob="0.815" acc_prob="0.993" e_score="0.956"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="31912" e_stop="31884" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.925">
            <gDNA_intron_boundary i_start="31883" i_stop="31172" i_length="712"/>
          </intron>
          <exon e_serial="2" e_score="0.821">
            <gDNA_exon_boundary e_start="31171" e_stop="30954" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.359" acc_prob="0.790">
            <gDNA_intron_boundary i_start="30953" i_stop="28562" i_length="2392"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="28561" e_stop="28376" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.795">
            <gDNA_intron_boundary i_start="28375" i_stop="28304" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="28303" e_stop="28214" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.815" acc_prob="0.993">
            <gDNA_intron_boundary i_start="28213" i_stop="27467" i_length="747"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="27466" e_stop="27291" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31912" stop="31884"/>
              <exon start="31171" stop="30954"/>
              <exon start="28561" stop="28376"/>
              <exon start="28303" stop="28214"/>
              <exon start="27466" stop="27291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCTTCTCTTTCAGCCTACTAAACTTG : AAGAAGATATTAAAAAGATGTGGAAGTTGAAGATTGCAAAAGGACAAGATGATCGATACTTGTATAGTACAAATAACTATATTGGACGACAAATATGGGAGTTCGATCCAAATGCTGGAACAATAGAAGAACAAGCCAAAATCGAAGAGGCACGTCAACATTATTGGAACAATCGTTACAAAGTTAAGCCTAATAGTGATCTTCTTTGGAGAATGCAG : TTTTTGAGAGAGAAGAATTTCAAACAGAGAATTAGAGCAGTAAAAGTAGAAGAAGGAGAAGAAATTAGCCATGAAATTGCTACAGTTGCATTGCGTAGAGCTGTTCATTTCTTCTCAGCTTTACAGGCTACTGATGGACATTGGCCTGCTGAAAGTGCTGGTCCTCTCTTCTTTCTTCCACCTCTC : GTTATGTGTATGTATATCACTGGGCATCTTAATACTGTATTTCCAGCTGAACATCGGAAGGAAATTCTTCGTTATATATACTGTCACCAG : AATGAAGATGGTGGATGGGGTTTGCACATAGAAGGTCACAGTACTATGTTCTGTACAGCTATGAGTTACATTTGCATGAGGATCCTTGGAGAAGGACCAGAAGGCGGTGTTAATAATGCGTGTGCTAGAGCAAGGAAATGGATTCTTGATCATGGTAGTGTCATCGCCATTCCTTC</gDNA_template>
            <first_frame> I  S  S  L  S  A  Y  *  T  * :   R  R  Y  *  K  D  V  E  V  E  D  C  K  R  T  R  *  S  I  L  V  *  Y  K  *  L  Y  W  T  T  N  M  G  V  R  S  K  C  W  N  N  R  R  T  S  Q  N  R  R  G  T  S  T  L  L  E  Q  S  L  Q  S  *  A  *  *  *  S  S  L  E  N  A   : V  F  E  R  E  E  F  Q  T  E  N  *  S  S  K  S  R  R  R  R  R  N  *  P  *  N  C  Y  S  C  I  A  *  S  C  S  F  L  L  S  F  T  G  Y  *  W  T  L  A  C  *  K  C  W  S  S  L  L  S  S  T  S   : R  Y  V  Y  V  Y  H  W  A  S  *  Y  C  I  S  S  *  T  S  E  G  N  S  S  L  Y  I  L  S  P   : E  *  R  W  W  M  G  F  A  H  R  R  S  Q  Y  Y  V  L  Y  S  Y  E  L  H  L  H  E  D  P  W  R  R  T  R  R  R  C  *  *  C  V  C  *  S  K  E  M  D  S  *  S  W  *  C  H  R  H  S  F </first_frame>
            <second_frame>  F  L  L  F  Q  P  T  K  L   : E  E  D  I  K  K  M  W  K  L  K  I  A  K  G  Q  D  D  R  Y  L  Y  S  T  N  N  Y  I  G  R  Q  I  W  E  F  D  P  N  A  G  T  I  E  E  Q  A  K  I  E  E  A  R  Q  H  Y  W  N  N  R  Y  K  V  K  P  N  S  D  L  L  W  R  M  Q  :  F  L  R  E  K  N  F  K  Q  R  I  R  A  V  K  V  E  E  G  E  E  I  S  H  E  I  A  T  V  A  L  R  R  A  V  H  F  F  S  A  L  Q  A  T  D  G  H  W  P  A  E  S  A  G  P  L  F  F  L  P  P  L  :  V  M  C  M  Y  I  T  G  H  L  N  T  V  F  P  A  E  H  R  K  E  I  L  R  Y  I  Y  C  H  Q  :  N  E  D  G  G  W  G  L  H  I  E  G  H  S  T  M  F  C  T  A  M  S  Y  I  C  M  R  I  L  G  E  G  P  E  G  G  V  N  N  A  C  A  R  A  R  K  W  I  L  D  H  G  S  V  I  A  I  P   </second_frame>
            <third_frame>   F  F  S  F  S  L  L  N  L  :  K  K  I  L  K  R  C  G  S  *  R  L  Q  K  D  K  M  I  D  T  C  I  V  Q  I  T  I  L  D  D  K  Y  G  S  S  I  Q  M  L  E  Q  *  K  N  K  P  K  S  K  R  H  V  N  I  I  G  T  I  V  T  K  L  S  L  I  V  I  F  F  G  E  C  S :   F  *  E  R  R  I  S  N  R  E  L  E  Q  *  K  *  K  K  E  K  K  L  A  M  K  L  L  Q  L  H  C  V  E  L  F  I  S  S  Q  L  Y  R  L  L  M  D  I  G  L  L  K  V  L  V  L  S  S  F  F  H  L  S :   L  C  V  C  I  S  L  G  I  L  I  L  Y  F  Q  L  N  I  G  R  K  F  F  V  I  Y  T  V  T  R :   M  K  M  V  D  G  V  C  T  *  K  V  T  V  L  C  S  V  Q  L  *  V  T  F  A  *  G  S  L  E  K  D  Q  K  A  V  L  I  M  R  V  L  E  Q  G  N  G  F  L  I  M  V  V  S  S  P  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31911" stop="31884"/>
                    <exon start="31171" stop="30954"/>
                    <exon start="28561" stop="28376"/>
                    <exon start="28303" stop="28214"/>
                    <exon start="27466" stop="27293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLFQPTKLEEDIKKMWKLKIAKGQDDRYLYSTNNYIGRQIWEFDPNAGTIEEQAKIEEARQHYWNNRYKVKPNSDLLWRMQFLREKNFKQRIRAVKVEEGEEISHEIATVALRRAVHFFSALQATDGHWPAESAGPLFFLPPLVMCMYITGHLNTVFPAEHRKEILRYIYCHQNEDGGWGLHIEGHSTMFCTAMSYICMRILGEGPEGGVNNACARARKWILDHGSVIAIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36340" PGL_stop="34780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36340" e_stop="36338"/>
            <exon e_start="36260" e_stop="36083"/>
            <exon e_start="35718" e_stop="35638"/>
            <exon e_start="35400" e_stop="35317"/>
            <exon e_start="34947" e_stop="34780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="0.966"/>
          <exon-intron don_prob="0.932" acc_prob="0.660" e_score="0.988"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="0.988"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36340" e_stop="36338" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.967">
            <gDNA_intron_boundary i_start="36337" i_stop="36261" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="36260" e_stop="36083" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.950">
            <gDNA_intron_boundary i_start="36082" i_stop="35719" i_length="364"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="35718" e_stop="35638" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.660">
            <gDNA_intron_boundary i_start="35637" i_stop="35401" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="35400" e_stop="35317" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35316" i_stop="34948" i_length="369"/>
          </intron>
          <exon e_serial="5" e_score="0.887">
            <gDNA_exon_boundary e_start="34947" e_stop="34780" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36340" stop="36338"/>
              <exon start="36260" stop="36083"/>
              <exon start="35718" stop="35638"/>
              <exon start="35400" stop="35317"/>
              <exon start="34947" stop="34780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36340" stop="36338"/>
              <exon start="36260" stop="36083"/>
              <exon start="35718" stop="35638"/>
              <exon start="35400" stop="35317"/>
              <exon start="34947" stop="34783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATG : GTATGGTTTCTGGGGTGTGTGCTTTACATATGCTTCCTGGTTTGCTCTTGGAGGGCTTGCTGCAGCAGGCAAGAGTTACAGCAACTCTGCAGCTGTTCGTAAAGGCGTTGACTTTCTGCTACAAAGACAAAGGTCTGATGGTGGTTGGGGAGAAAGCTACCATTCTTGTCCCGACAAG : GTATATAGAGAGCTTGAAACAGAACACTCGAATCTTGTACAAACTGCATGGGCATTGATGGGATTGATTCACTCTGGCCAG : GCTGATAGAGATCCAAAACCCCTCCACCGTGCGGCAAGGCTTTTGATTAATTCTCAGATGGAAGATGGTGACTTCCCACAACAG : GAAATAACTGGAGCTTTCATGAAGAATTGCATGTTGCACTATGCAACATTTAGAAATATATTTCCATTGTGGGGTTTGGCTGAATACCGCAAAAATGTTTCAGTATCATTAAAAAACAGCTAAAGATATATTACATTAGTTATATCTTAAGAAATAAATAAGGGAAAA</gDNA_template>
            <first_frame> M  :  V  W  F  L  G  C  V  L  Y  I  C  F  L  V  C  S  W  R  A  C  C  S  R  Q  E  L  Q  Q  L  C  S  C  S  *  R  R  *  L  S  A  T  K  T  K  V  *  W  W  L  G  R  K  L  P  F  L  S  R  Q   : G  I  *  R  A  *  N  R  T  L  E  S  C  T  N  C  M  G  I  D  G  I  D  S  L  W  P   : G  *  *  R  S  K  T  P  P  P  C  G  K  A  F  D  *  F  S  D  G  R  W  *  L  P  T  T   : G  N  N  W  S  F  H  E  E  L  H  V  A  L  C  N  I  *  K  Y  I  S  I  V  G  F  G  *  I  P  Q  K  C  F  S  I  I  K  K  Q  L  K  I  Y  Y  I  S  Y  I  L  R  N  K  *  G  K  </first_frame>
            <second_frame>  W :   Y  G  F  W  G  V  C  F  T  Y  A  S  W  F  A  L  G  G  L  A  A  A  G  K  S  Y  S  N  S  A  A  V  R  K  G  V  D  F  L  L  Q  R  Q  R  S  D  G  G  W  G  E  S  Y  H  S  C  P  D  K  :  V  Y  R  E  L  E  T  E  H  S  N  L  V  Q  T  A  W  A  L  M  G  L  I  H  S  G  Q  :  A  D  R  D  P  K  P  L  H  R  A  A  R  L  L  I  N  S  Q  M  E  D  G  D  F  P  Q  Q  :  E  I  T  G  A  F  M  K  N  C  M  L  H  Y  A  T  F  R  N  I  F  P  L  W  G  L  A  E  Y  R  K  N  V  S  V  S  L  K  N  S  *  R  Y  I  T  L  V  I  S  *  E  I  N  K  G  K </second_frame>
            <third_frame>    : G  M  V  S  G  V  C  A  L  H  M  L  P  G  L  L  L  E  G  L  L  Q  Q  A  R  V  T  A  T  L  Q  L  F  V  K  A  L  T  F  C  Y  K  D  K  G  L  M  V  V  G  E  K  A  T  I  L  V  P  T  R :   Y  I  E  S  L  K  Q  N  T  R  I  L  Y  K  L  H  G  H  *  W  D  *  F  T  L  A  R :   L  I  E  I  Q  N  P  S  T  V  R  Q  G  F  *  L  I  L  R  W  K  M  V  T  S  H  N  R :   K  *  L  E  L  S  *  R  I  A  C  C  T  M  Q  H  L  E  I  Y  F  H  C  G  V  W  L  N  T  A  K  M  F  Q  Y  H  *  K  T  A  K  D  I  L  H  *  L  Y  L  K  K  *  I  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36339" stop="36338"/>
                    <exon start="36260" stop="36083"/>
                    <exon start="35718" stop="35638"/>
                    <exon start="35400" stop="35317"/>
                    <exon start="34947" stop="34825"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYGFWGVCFTYASWFALGGLAAAGKSYSNSAAVRKGVDFLLQRQRSDGGWGESYHSCPDKVYRELETEHSNLVQTAWALMGLIHSGQADRDPKPLHRAARLLINSQMEDGDFPQQEITGAFMKNCMLHYATFRNIFPLWGLAEYRKNVSVSLKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="39778" PGL_stop="37395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39778" e_stop="39732"/>
            <exon e_start="39356" e_stop="39159"/>
            <exon e_start="38703" e_stop="38619"/>
            <exon e_start="38426" e_stop="38279"/>
            <exon e_start="38096" e_stop="37908"/>
            <exon e_start="37810" e_stop="37697"/>
            <exon e_start="37506" e_stop="37395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.995" e_score="0.894"/>
          <exon-intron don_prob="0.989" acc_prob="0.834" e_score="0.975"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.738" acc_prob="0.980" e_score="0.993"/>
          <exon-intron don_prob="0.975" acc_prob="0.979" e_score="0.989"/>
          <exon-intron don_prob="0.971" acc_prob="0.947" e_score="0.991"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="39778" e_stop="39732" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39731" i_stop="39357" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="39356" e_stop="39159" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.834">
            <gDNA_intron_boundary i_start="39158" i_stop="38704" i_length="455"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="38703" e_stop="38619" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38618" i_stop="38427" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="38426" e_stop="38279" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.738" acc_prob="0.980">
            <gDNA_intron_boundary i_start="38278" i_stop="38097" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="38096" e_stop="37908" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.979">
            <gDNA_intron_boundary i_start="37907" i_stop="37811" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="37810" e_stop="37697" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.947">
            <gDNA_intron_boundary i_start="37696" i_stop="37507" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="37506" e_stop="37395" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39778" stop="39732"/>
              <exon start="39356" stop="39159"/>
              <exon start="38703" stop="38619"/>
              <exon start="38426" stop="38279"/>
              <exon start="38096" stop="37908"/>
              <exon start="37810" stop="37697"/>
              <exon start="37506" stop="37395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGAACATCGAAAGGAAATTCTTCGTTATATATACTGTCACCAG : AATGAAGATGGCGGATGGGGGTTGCATATAGAAGGTCACAGTACAATGTTTTGTACAGCTCTGAGTTATATTTGCATGAGGATCCTTGGAGAAGGACCAGACGGTGGCGAAAGAAATGCGTGTGCTAGAGCGAGGAAATGGATTCTTGATCATGGTAGCGTTACTGCGATTCCTTCTTCGGGGAAAATATGGCTCTCG : ATTCTTGGAGCTTTTGAGTGGTTAGGAACCAATCCAATTCCTCCCGAGTTTTATATTCTTCCTTCTTTTCTTCCAATGCATCCAG : TCGAATATTTTACATGCCACTGTCTTATCTCTATGGTAAGAGATTTGTTGGTCCAATCACACCTCTCATTTTGCAATTGAGGGAAGAGTTATATGATCAACCATACAATGAAATCAACTGGAAAAGAGTACGCCATCTATGTGCAAAG : GAGGATCTCTATTACCCTCATCCACTGGTTCAGGACTTGATGTGGGACACTCTCTACTTTTTTTACGAGCCTTTATTGACTCGTTGGCCTTTCAACAAGCTGAGAAATAAAGCTCTTGAGGTTACGATGAAACATCTTCATTATGAAGACGAGAATAGTCGATACATCACTGTTCAATGTGTCAATAAA : GTACTGTGTATGCTTGCTTGTTGGGTTGAGGATCCAAACGGCAGTTATTTCAAAAAACATCTTGCTCGGGTTCCAGATTATTTATGGGTAGCTGAAGATGGGATGAAAATGCAG : AATAGCGGTAGTCAATCATGGGATACTAGTTTTGCTATTCAAGCACTATTGGCCAGTGAGATGAACGATGAGATATCAGATACTCTTAGAAAAGGACACGACTTCATAAAAA</gDNA_template>
            <first_frame> Q  L  N  I  E  R  K  F  F  V  I  Y  T  V  T  R :   M  K  M  A  D  G  G  C  I  *  K  V  T  V  Q  C  F  V  Q  L  *  V  I  F  A  *  G  S  L  E  K  D  Q  T  V  A  K  E  M  R  V  L  E  R  G  N  G  F  L  I  M  V  A  L  L  R  F  L  L  R  G  K  Y  G  S  R :   F  L  E  L  L  S  G  *  E  P  I  Q  F  L  P  S  F  I  F  F  L  L  F  F  Q  C  I  Q  :  S  N  I  L  H  A  T  V  L  S  L  W  *  E  I  C  W  S  N  H  T  S  H  F  A  I  E  G  R  V  I  *  S  T  I  Q  *  N  Q  L  E  K  S  T  P  S  M  C  K   : G  G  S  L  L  P  S  S  T  G  S  G  L  D  V  G  H  S  L  L  F  L  R  A  F  I  D  S  L  A  F  Q  Q  A  E  K  *  S  S  *  G  Y  D  E  T  S  S  L  *  R  R  E  *  S  I  H  H  C  S  M  C  Q  *   : S  T  V  Y  A  C  L  L  G  *  G  S  K  R  Q  L  F  Q  K  T  S  C  S  G  S  R  L  F  M  G  S  *  R  W  D  E  N  A   : E  *  R  *  S  I  M  G  Y  *  F  C  Y  S  S  T  I  G  Q  *  D  E  R  *  D  I  R  Y  S  *  K  R  T  R  L  H  K   </first_frame>
            <second_frame>  S  *  T  S  K  G  N  S  S  L  Y  I  L  S  P   : E  *  R  W  R  M  G  V  A  Y  R  R  S  Q  Y  N  V  L  Y  S  S  E  L  Y  L  H  E  D  P  W  R  R  T  R  R  W  R  K  K  C  V  C  *  S  E  E  M  D  S  *  S  W  *  R  Y  C  D  S  F  F  G  E  N  M  A  L   : D  S  W  S  F  *  V  V  R  N  Q  S  N  S  S  R  V  L  Y  S  S  F  F  S  S  N  A  S  S :   R  I  F  Y  M  P  L  S  Y  L  Y  G  K  R  F  V  G  P  I  T  P  L  I  L  Q  L  R  E  E  L  Y  D  Q  P  Y  N  E  I  N  W  K  R  V  R  H  L  C  A  K  :  E  D  L  Y  Y  P  H  P  L  V  Q  D  L  M  W  D  T  L  Y  F  F  Y  E  P  L  L  T  R  W  P  F  N  K  L  R  N  K  A  L  E  V  T  M  K  H  L  H  Y  E  D  E  N  S  R  Y  I  T  V  Q  C  V  N  K  :  V  L  C  M  L  A  C  W  V  E  D  P  N  G  S  Y  F  K  K  H  L  A  R  V  P  D  Y  L  W  V  A  E  D  G  M  K  M  Q  :  N  S  G  S  Q  S  W  D  T  S  F  A  I  Q  A  L  L  A  S  E  M  N  D  E  I  S  D  T  L  R  K  G  H  D  F  I  K  </second_frame>
            <third_frame>   A  E  H  R  K  E  I  L  R  Y  I  Y  C  H  Q  :  N  E  D  G  G  W  G  L  H  I  E  G  H  S  T  M  F  C  T  A  L  S  Y  I  C  M  R  I  L  G  E  G  P  D  G  G  E  R  N  A  C  A  R  A  R  K  W  I  L  D  H  G  S  V  T  A  I  P  S  S  G  K  I  W  L  S  :  I  L  G  A  F  E  W  L  G  T  N  P  I  P  P  E  F  Y  I  L  P  S  F  L  P  M  H  P   : V  E  Y  F  T  C  H  C  L  I  S  M  V  R  D  L  L  V  Q  S  H  L  S  F  C  N  *  G  K  S  Y  M  I  N  H  T  M  K  S  T  G  K  E  Y  A  I  Y  V  Q  R :   R  I  S  I  T  L  I  H  W  F  R  T  *  C  G  T  L  S  T  F  F  T  S  L  Y  *  L  V  G  L  S  T  S  *  E  I  K  L  L  R  L  R  *  N  I  F  I  M  K  T  R  I  V  D  T  S  L  F  N  V  S  I  K :   Y  C  V  C  L  L  V  G  L  R  I  Q  T  A  V  I  S  K  N  I  L  L  G  F  Q  I  I  Y  G  *  L  K  M  G  *  K  C  R :   I  A  V  V  N  H  G  I  L  V  L  L  F  K  H  Y  W  P  V  R  *  T  M  R  Y  Q  I  L  L  E  K  D  T  T  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38686" stop="38619"/>
                    <exon start="38426" stop="38279"/>
                    <exon start="38096" stop="37908"/>
                    <exon start="37810" stop="37697"/>
                    <exon start="37506" stop="37396"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVRNQSNSSRVLYSSFFSSNASSRIFYMPLSYLYGKRFVGPITPLILQLREELYDQPYNEINWKRVRHLCAKEDLYYPHPLVQDLMWDTLYFFYEPLLTRWPFNKLRNKALEVTMKHLHYEDENSRYITVQCVNKVLCMLACWVEDPNGSYFKKHLARVPDYLWVAEDGMKMQNSGSQSWDTSFAIQALLASEMNDEISDTLRKGHDFIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46526" PGL_stop="45368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46526" e_stop="45979"/>
            <exon e_start="45431" e_stop="45368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.943"/>
          <exon-only e_score="0.578"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="46526" e_stop="45979" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45978" i_stop="45432" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="0.578">
            <gDNA_exon_boundary e_start="45431" e_stop="45368" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46526" stop="45979"/>
              <exon start="45431" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605832" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46462" stop="46043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46462" stop="46043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAGGATACTGTCACTCCTGTCAATTTGGTTGGATATGGATTGGCTTTCTTAGGTGTGGCGTATTACAACCACGCCAAATTGCAGGCTCTTAAGGCGAATGAAGCACAGAAGAAGGCTTCACAGGCTGCTGATGAGGAGGCTGGAAGATTGTTGGAGGAAAGAGAAGGGGAGAATGGTGCTAAGAAGAATGAGTCTCAGGGTTGAGTTGTTTCTTCGTTTACTTCGTATTATCCATAGGTAGAATGACATTGAGAGATGAAACCTGAAGATCAGATTATAACGTCCTTGTGCGGATGATTTAGCTTCTGTTTTTTTAGGTATAAATCATTTACATTATCTGTTTTGAGGATCTTATAATAGTTTTATTGCTCGTATTACCTTACCAGATCGTGCATGTACTTGAGCATGACTCGAGGCAATTTATGTTTATTTTGACAGAACAGTAATACTAGAAGAGCTTTTACTAATGAAAGTAACTGATGCAGCTAAATATGTCTTTGTTTCCCTTTTCTTGAAATACTTCATTTGTCTTTAACATCATTGCC : ATGGGAGATAAAGGAACTAGAGCTACTAATAAGTCATTGTAAACTACCAATAACAACATACTCG</gDNA_template>
            <first_frame> I  K  D  T  V  T  P  V  N  L  V  G  Y  G  L  A  F  L  G  V  A  Y  Y  N  H  A  K  L  Q  A  L  K  A  N  E  A  Q  K  K  A  S  Q  A  A  D  E  E  A  G  R  L  L  E  E  R  E  G  E  N  G  A  K  K  N  E  S  Q  G  *  V  V  S  S  F  T  S  Y  Y  P  *  V  E  *  H  *  E  M  K  P  E  D  Q  I  I  T  S  L  C  G  *  F  S  F  C  F  F  R  Y  K  S  F  T  L  S  V  L  R  I  L  *  *  F  Y  C  S  Y  Y  L  T  R  S  C  M  Y  L  S  M  T  R  G  N  L  C  L  F  *  Q  N  S  N  T  R  R  A  F  T  N  E  S  N  *  C  S  *  I  C  L  C  F  P  F  L  E  I  L  H  L  S  L  T  S  L  P :   W  E  I  K  E  L  E  L  L  I  S  H  C  K  L  P  I  T  T  Y  S </first_frame>
            <second_frame>  L  R  I  L  S  L  L  S  I  W  L  D  M  D  W  L  S  *  V  W  R  I  T  T  T  P  N  C  R  L  L  R  R  M  K  H  R  R  R  L  H  R  L  L  M  R  R  L  E  D  C  W  R  K  E  K  G  R  M  V  L  R  R  M  S  L  R  V  E  L  F  L  R  L  L  R  I  I  H  R  *  N  D  I  E  R  *  N  L  K  I  R  L  *  R  P  C  A  D  D  L  A  S  V  F  L  G  I  N  H  L  H  Y  L  F  *  G  S  Y  N  S  F  I  A  R  I  T  L  P  D  R  A  C  T  *  A  *  L  E  A  I  Y  V  Y  F  D  R  T  V  I  L  E  E  L  L  L  M  K  V  T  D  A  A  K  Y  V  F  V  S  L  F  L  K  Y  F  I  C  L  *  H  H  C   : H  G  R  *  R  N  *  S  Y  *  *  V  I  V  N  Y  Q  *  Q  H  T   </second_frame>
            <third_frame>   *  G  Y  C  H  S  C  Q  F  G  W  I  W  I  G  F  L  R  C  G  V  L  Q  P  R  Q  I  A  G  S  *  G  E  *  S  T  E  E  G  F  T  G  C  *  *  G  G  W  K  I  V  G  G  K  R  R  G  E  W  C  *  E  E  *  V  S  G  L  S  C  F  F  V  Y  F  V  L  S  I  G  R  M  T  L  R  D  E  T  *  R  S  D  Y  N  V  L  V  R  M  I  *  L  L  F  F  *  V  *  I  I  Y  I  I  C  F  E  D  L  I  I  V  L  L  L  V  L  P  Y  Q  I  V  H  V  L  E  H  D  S  R  Q  F  M  F  I  L  T  E  Q  *  Y  *  K  S  F  Y  *  *  K  *  L  M  Q  L  N  M  S  L  F  P  F  S  *  N  T  S  F  V  F  N  I  I  A  :  M  G  D  K  G  T  R  A  T  N  K  S  L  *  T  T  N  N  N  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46526" stop="46320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKDTVTPVNLVGYGLAFLGVAYYNHAKLQALKANEAQKKASQAADEEAGRLLEEREGENGAKKNESQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52432" PGL_stop="57142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52432" e_stop="53103"/>
            <exon e_start="54962" e_stop="55037"/>
            <exon e_start="55128" e_stop="55243"/>
            <exon e_start="56548" e_stop="57142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.839" e_score="0.998"/>
          <exon-intron don_prob="0.853" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="52432" e_stop="53103" e_length="672"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.839">
            <gDNA_intron_boundary i_start="53104" i_stop="54961" i_length="1858"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54962" e_stop="55037" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.853" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55038" i_stop="55127" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55128" e_stop="55243" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.889">
            <gDNA_intron_boundary i_start="55244" i_stop="56547" i_length="1304"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="56548" e_stop="57142" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52432" stop="53032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52438" stop="52982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52438" stop="52982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52985" stop="53103"/>
              <exon start="54962" stop="55037"/>
              <exon start="55128" stop="55243"/>
              <exon start="56548" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGCCTTTTTACTACTTTCTATGAACAGTGACAAAATAATTTTTTCAAGTGAAAAGCAACAACAAAGGTCAAGAATGGTAGTACTACTACTAGTGTTCATGAACAATATAGAATCTTGAAATAGCAGATCAAGAAAATGGAACTTACCATAAAGAAAACTAAATGGATGGTTCCTTTAGCTATTGCACTTTTAATATCTTTTTTCTTAATCATTTTCACTCTTTCAACTAAAACCCCATTTCAGAAATCATCCATTAAAGCTAAAGTTCCAATCTTTGTTGAATCTAAACTACATATACCTTCTACTAGACCTATTTCAACAATACCCAAATTGGCATATTTGATTTCTGGTTCAAGTGGAGATGGGGAGAGCTTAAAGAGGACATTAAAGGCTTTGTACCATCCATTGAACCAGTATGTTGTACACTTAGACCTTGAAGCACCAGCTGATGAGAGGTTAGAGTTAGTGAACTTTGTAAAAAGGGAACCTTTATTTGTTGAAGTTGGGAATGTGAGAGTAGTTGTGAGATCTAATTTGGTTACTTATAGAGGACCTACTATGGTTAGTAATACACTTCATGCTGCTGCTATTTTGCTTAAGGAAGGTGGTGAGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTTTGGTGACACAAGATG : ATTTACTTCATACTTTTTCAACCGTGCCAAGAGAACTTAATTTTATTGAGCATACAAGTGACATTGGATGGAAGGA : ATATCACAGAGCCAGGCCTGTAATAATTGATTCAGGGCTGTACAGCCTGAATAAATCAGATCTCTTCTGGATCCCGCAGAAAAGGAGTATGCCAACAGCATTTAAACTATTCACAG : GCTCTGCTTGGACGATGCTCTCTCGCCCCTTTATGGAGTACCTTTTATGGGGGTGGGATAACCTTCCAAGAATAGTCTTAATGTACTATGCCAACTTCCTTTCAACGCCTGAAGGATATTTCCACACTGTCATATGTAATGCAGAAGAGTTCCTGAACACTACAGTGAATCACGACCTTCATTTCATATCCTGGGATAACCCTCCAAAGCAACATCCACATGTTCTAACTCTTAAGGATTACAAGAACATGGTTGACAGCAATGCATCATTCGCCAGAAAATTCCGCAGGAATGAACCAGTGCTTGACAAGATTGATTCTGAGCTCTTGGGGCGCAAAGTCGATGGTTTTGTTCCTGGTAGTTGGTTTGATGGCGGGGATTCCAACGCTACAATCTCACAGTACATTCTAAGAAACATAACTTCACTGAGACCTGGACCAGGTGCACAGAGAATGAAAAGTCTTATTTCTAGTTTGTTGTCTGATAAAGATTTTAGCTCAAAGCACTGCATCTAGTTCCTGACTGGTTGCAATTCGCGTGCTATAATGGAAATCTTTCGGTTGAATAACGGATCAATTCATCGTTGCTTATTCCC</gDNA_template>
            <first_frame> K  N  A  F  L  L  L  S  M  N  S  D  K  I  I  F  S  S  E  K  Q  Q  Q  R  S  R  M  V  V  L  L  L  V  F  M  N  N  I  E  S  *  N  S  R  S  R  K  W  N  L  P  *  R  K  L  N  G  W  F  L  *  L  L  H  F  *  Y  L  F  S  *  S  F  S  L  F  Q  L  K  P  H  F  R  N  H  P  L  K  L  K  F  Q  S  L  L  N  L  N  Y  I  Y  L  L  L  D  L  F  Q  Q  Y  P  N  W  H  I  *  F  L  V  Q  V  E  M  G  R  A  *  R  G  H  *  R  L  C  T  I  H  *  T  S  M  L  Y  T  *  T  L  K  H  Q  L  M  R  G  *  S  *  *  T  L  *  K  G  N  L  Y  L  L  K  L  G  M  *  E  *  L  *  D  L  I  W  L  L  I  E  D  L  L  W  L  V  I  H  F  M  L  L  L  F  C  L  R  K  V  V  S  G  I  G  S  L  I  L  V  L  L  I  I  L  W  *  H  K  M  :  I  Y  F  I  L  F  Q  P  C  Q  E  N  L  I  L  L  S  I  Q  V  T  L  D  G  R   : N  I  T  E  P  G  L  *  *  L  I  Q  G  C  T  A  *  I  N  Q  I  S  S  G  S  R  R  K  G  V  C  Q  Q  H  L  N  Y  S  Q  :  A  L  L  G  R  C  S  L  A  P  L  W  S  T  F  Y  G  G  G  I  T  F  Q  E  *  S  *  C  T  M  P  T  S  F  Q  R  L  K  D  I  S  T  L  S  Y  V  M  Q  K  S  S  *  T  L  Q  *  I  T  T  F  I  S  Y  P  G  I  T  L  Q  S  N  I  H  M  F  *  L  L  R  I  T  R  T  W  L  T  A  M  H  H  S  P  E  N  S  A  G  M  N  Q  C  L  T  R  L  I  L  S  S  W  G  A  K  S  M  V  L  F  L  V  V  G  L  M  A  G  I  P  T  L  Q  S  H  S  T  F  *  E  T  *  L  H  *  D  L  D  Q  V  H  R  E  *  K  V  L  F  L  V  C  C  L  I  K  I  L  A  Q  S  T  A  S  S  S  *  L  V  A  I  R  V  L  *  W  K  S  F  G  *  I  T  D  Q  F  I  V  A  Y  S  </first_frame>
            <second_frame>  K  M  P  F  Y  Y  F  L  *  T  V  T  K  *  F  F  Q  V  K  S  N  N  K  G  Q  E  W  *  Y  Y  Y  *  C  S  *  T  I  *  N  L  E  I  A  D  Q  E  N  G  T  Y  H  K  E  N  *  M  D  G  S  F  S  Y  C  T  F  N  I  F  F  L  N  H  F  H  S  F  N  *  N  P  I  S  E  I  I  H  *  S  *  S  S  N  L  C  *  I  *  T  T  Y  T  F  Y  *  T  Y  F  N  N  T  Q  I  G  I  F  D  F  W  F  K  W  R  W  G  E  L  K  E  D  I  K  G  F  V  P  S  I  E  P  V  C  C  T  L  R  P  *  S  T  S  *  *  E  V  R  V  S  E  L  C  K  K  G  T  F  I  C  *  S  W  E  C  E  S  S  C  E  I  *  F  G  Y  L  *  R  T  Y  Y  G  *  *  Y  T  S  C  C  C  Y  F  A  *  G  R  W  *  V  G  L  V  H  *  S  *  C  F  *  L  S  F  G  D  T  R  * :   F  T  S  Y  F  F  N  R  A  K  R  T  *  F  Y  *  A  Y  K  *  H  W  M  E  G  :  I  S  Q  S  Q  A  C  N  N  *  F  R  A  V  Q  P  E  *  I  R  S  L  L  D  P  A  E  K  E  Y  A  N  S  I  *  T  I  H  R :   L  C  L  D  D  A  L  S  P  L  Y  G  V  P  F  M  G  V  G  *  P  S  K  N  S  L  N  V  L  C  Q  L  P  F  N  A  *  R  I  F  P  H  C  H  M  *  C  R  R  V  P  E  H  Y  S  E  S  R  P  S  F  H  I  L  G  *  P  S  K  A  T  S  T  C  S  N  S  *  G  L  Q  E  H  G  *  Q  Q  C  I  I  R  Q  K  I  P  Q  E  *  T  S  A  *  Q  D  *  F  *  A  L  G  A  Q  S  R  W  F  C  S  W  *  L  V  *  W  R  G  F  Q  R  Y  N  L  T  V  H  S  K  K  H  N  F  T  E  T  W  T  R  C  T  E  N  E  K  S  Y  F  *  F  V  V  *  *  R  F  *  L  K  A  L  H  L  V  P  D  W  L  Q  F  A  C  Y  N  G  N  L  S  V  E  *  R  I  N  S  S  L  L  I  P </second_frame>
            <third_frame>   K  C  L  F  T  T  F  Y  E  Q  *  Q  N  N  F  F  K  *  K  A  T  T  K  V  K  N  G  S  T  T  T  S  V  H  E  Q  Y  R  I  L  K  *  Q  I  K  K  M  E  L  T  I  K  K  T  K  W  M  V  P  L  A  I  A  L  L  I  S  F  F  L  I  I  F  T  L  S  T  K  T  P  F  Q  K  S  S  I  K  A  K  V  P  I  F  V  E  S  K  L  H  I  P  S  T  R  P  I  S  T  I  P  K  L  A  Y  L  I  S  G  S  S  G  D  G  E  S  L  K  R  T  L  K  A  L  Y  H  P  L  N  Q  Y  V  V  H  L  D  L  E  A  P  A  D  E  R  L  E  L  V  N  F  V  K  R  E  P  L  F  V  E  V  G  N  V  R  V  V  V  R  S  N  L  V  T  Y  R  G  P  T  M  V  S  N  T  L  H  A  A  A  I  L  L  K  E  G  G  E  W  D  W  F  I  N  L  S  A  S  D  Y  P  L  V  T  Q  D   : D  L  L  H  T  F  S  T  V  P  R  E  L  N  F  I  E  H  T  S  D  I  G  W  K  E :   Y  H  R  A  R  P  V  I  I  D  S  G  L  Y  S  L  N  K  S  D  L  F  W  I  P  Q  K  R  S  M  P  T  A  F  K  L  F  T   : G  S  A  W  T  M  L  S  R  P  F  M  E  Y  L  L  W  G  W  D  N  L  P  R  I  V  L  M  Y  Y  A  N  F  L  S  T  P  E  G  Y  F  H  T  V  I  C  N  A  E  E  F  L  N  T  T  V  N  H  D  L  H  F  I  S  W  D  N  P  P  K  Q  H  P  H  V  L  T  L  K  D  Y  K  N  M  V  D  S  N  A  S  F  A  R  K  F  R  R  N  E  P  V  L  D  K  I  D  S  E  L  L  G  R  K  V  D  G  F  V  P  G  S  W  F  D  G  G  D  S  N  A  T  I  S  Q  Y  I  L  R  N  I  T  S  L  R  P  G  P  G  A  Q  R  M  K  S  L  I  S  S  L  L  S  D  K  D  F  S  S  K  H  C  I  *  F  L  T  G  C  N  S  R  A  I  M  E  I  F  R  L  N  N  G  S  I  H  R  C  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52560" stop="53103"/>
                    <exon start="54962" stop="55037"/>
                    <exon start="55128" stop="55243"/>
                    <exon start="56548" stop="57062"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIKKMELTIKKTKWMVPLAIALLISFFLIIFTLSTKTPFQKSSIKAKVPIFVESKLHIPSTRPISTIPKLAYLISGSSGDGESLKRTLKALYHPLNQYVVHLDLEAPADERLELVNFVKREPLFVEVGNVRVVVRSNLVTYRGPTMVSNTLHAAAILLKEGGEWDWFINLSASDYPLVTQDDLLHTFSTVPRELNFIEHTSDIGWKEYHRARPVIIDSGLYSLNKSDLFWIPQKRSMPTAFKLFTGSAWTMLSRPFMEYLLWGWDNLPRIVLMYYANFLSTPEGYFHTVICNAEEFLNTTVNHDLHFISWDNPPKQHPHVLTLKDYKNMVDSNASFARKFRRNEPVLDKIDSELLGRKVDGFVPGSWFDGGDSNATISQYILRNITSLRPGPGAQRMKSLISSLLSDKDFSSKHCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58326" PGL_stop="70686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58326" e_stop="58705"/>
            <exon e_start="59357" e_stop="59452"/>
            <exon e_start="61530" e_stop="61604"/>
            <exon e_start="64121" e_stop="64225"/>
            <exon e_start="64310" e_stop="64420"/>
            <exon e_start="64838" e_stop="64997"/>
            <exon e_start="66024" e_stop="66109"/>
            <exon e_start="66674" e_stop="66796"/>
            <exon e_start="66873" e_stop="67103"/>
            <exon e_start="69388" e_stop="69477"/>
            <exon e_start="70368" e_stop="70686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="58326" e_stop="58705" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58706" i_stop="59356" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59357" e_stop="59452" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59453" i_stop="61529" i_length="2077"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61530" e_stop="61604" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61605" i_stop="64120" i_length="2516"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64225" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64226" i_stop="64309" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64310" e_stop="64420" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64421" i_stop="64837" i_length="417"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64838" e_stop="64997" e_length="160"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64998" i_stop="66023" i_length="1026"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66024" e_stop="66109" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.950">
            <gDNA_intron_boundary i_start="66110" i_stop="66673" i_length="564"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66674" e_stop="66796" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="66797" i_stop="66872" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66873" e_stop="67103" e_length="231"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.916">
            <gDNA_intron_boundary i_start="67104" i_stop="69387" i_length="2284"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69388" e_stop="69477" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69478" i_stop="70367" i_length="890"/>
          </intron>
          <exon e_serial="11" e_score="0.972">
            <gDNA_exon_boundary e_start="70368" e_stop="70686" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58326" stop="58705"/>
              <exon start="59357" stop="59452"/>
              <exon start="61530" stop="61604"/>
              <exon start="64121" stop="64225"/>
              <exon start="64310" stop="64420"/>
              <exon start="64838" stop="64997"/>
              <exon start="66024" stop="66109"/>
              <exon start="66674" stop="66796"/>
              <exon start="66873" stop="67103"/>
              <exon start="69388" stop="69477"/>
              <exon start="70368" stop="70686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTACACCAATTTTCATCTTACTTTTTTTATTTTACAATACAAAAACCCTAAACTAGGGCTTTTCTTCCCGCCTTCTTCCTCACTCTCACTGTGTCAGTTCCGGTGAACGGAGCTGAAGAGTACACACAGATTCCGGTGAACAGAGCTGAAGAGTACACACAGATTCCGGTGAACGGAGCTGAAACCTACGCAGAGATTCCGGTGAGCGGAGATTAAAGCTGAGAGTAACAGAGAAACAATGGTCTCCCTGAAGATTTTACTATCTCTAATTGAATCTACTGTATTGAATCCCACACCTCCTACGCCATCGGAGAGGATCGAGCTGCTTCACGCCATTCGTCACTCTCTTCCATCTTTCCAGTCACTACTTTCCTATCCG : CCCCCCAAGCCCTCGGACCGAGTTCAAGTCCAGTCCAAAGAAGTGAGACTTCCAGATTCTGGCCCAATTTCACTGGATGATCAGGATGTTCAAATT : GCCCTAAAGTTAAGTGATGATCTACATCTTAATGAAGTAGACTCTGTTCGGTTGCTTGTTTCTGCCAATCAAGAG : TGGGGATTATTGGGACGTGAGCCATTAGAGATATTCCGCCTCGCAGCTGGACTGTGGTATACAGAGAGAAGAGATCTTATAACAGCACTTTACACACTGTTGAGG : GCTGTTGTCCTTGATCAAGGACTGGAACCTGATCTTGTGGCAGATATTCAGAGATTTTTGGACGATCTCATTAATGCTGGAGTTAGAAAGCGGTTAATCTCACTCATAAAG : GAACTCAATCGAGAAGAGCCATCTGGTTTGGGTGGGCCTAACTGTGAACGCTATATTCTTGATTCAAGAGGAGCTTTGGTGGAAAGGAGAGCTGTTGTTTCCAGGGAAAGGCTCATTCTGGCTCATTGCCTTGTCCTTTCTGTTTTGGTGGTGCGTGCAA : GCCCTAAAGATGTGAAGGACGTCTTTTCTACTCTAAAGGATAGTGCAGCAGGGCTTAGTGGTAGCACTGACACTTTAAGCCATCAG : ATAACATATAGTCTTCTATTCTCCCTTGTGGTGGCTCTCATATCAGATGCATTGAGTGCAGTACCTGATAAAACATCAGTCTTGTCCCGTGATGCAGCTTTTAGGCAGGAATTTCAGGAATCT : GTAATGGTCACTGGGAATGATCCTGTTGTTGAGGGCTATTTTGATTGCTTAAGGAGTGCATGGGTTGTACATCTTATGCTAATACATGACGGGATTGATGCAAAAGATACATCAGCAACTGCTTCATCAAATAATGATATAAGGAACATCTATTCATGCTTGGAAGTTATATTCTCCAACAATGTCTTCCTGTCTTGGCTGAATAAGATCCTCCTAACTCCTGCCTATCAG : AATGATGATGAGGATATGATCTACATGTACAATGCCTATTTGCACAAGATGATAACATGCCTTTTGTCTCATCCATTGGCCAAGGACAAG : GTTAAAGAAGCAAAAGAGAAGGCTATGACGGCACTTGGTCCGTACCGCTTGTCTACTTCACATGATCATACTGTGGAGGGAATTGGGCATTTTCAAAAGGCCACTGAACCTGCACCACAAACTTTTGTCTCTCTCTTGGAGTTTGTGAGTGAAATTTACCAGGTTAGTGCCTTTTCTTGCTAATTTTGGAGTCCCTAGGGCATTATCACTACGAAAAGGTATGAACGGTGATACCAAATTGATTTTGTATTTCAACACATAAAACTCTTGAATATGGAAAACAATTCAAAACTATCTTTCCATTAATAAAATACGAGTT</gDNA_template>
            <first_frame> R  T  P  I  F  I  L  L  F  L  F  Y  N  T  K  T  L  N  *  G  F  S  S  R  L  L  P  H  S  H  C  V  S  S  G  E  R  S  *  R  V  H  T  D  S  G  E  Q  S  *  R  V  H  T  D  S  G  E  R  S  *  N  L  R  R  D  S  G  E  R  R  L  K  L  R  V  T  E  K  Q  W  S  P  *  R  F  Y  Y  L  *  L  N  L  L  Y  *  I  P  H  L  L  R  H  R  R  G  S  S  C  F  T  P  F  V  T  L  F  H  L  S  S  H  Y  F  P  I  R :   P  P  S  P  R  T  E  F  K  S  S  P  K  K  *  D  F  Q  I  L  A  Q  F  H  W  M  I  R  M  F  K  L :   P  *  S  *  V  M  I  Y  I  L  M  K  *  T  L  F  G  C  L  F  L  P  I  K  S :   G  D  Y  W  D  V  S  H  *  R  Y  S  A  S  Q  L  D  C  G  I  Q  R  E  E  I  L  *  Q  H  F  T  H  C  *  G :   L  L  S  L  I  K  D  W  N  L  I  L  W  Q  I  F  R  D  F  W  T  I  S  L  M  L  E  L  E  S  G  *  S  H  S  *  R :   N  S  I  E  K  S  H  L  V  W  V  G  L  T  V  N  A  I  F  L  I  Q  E  E  L  W  W  K  G  E  L  L  F  P  G  K  G  S  F  W  L  I  A  L  S  F  L  F  W  W  C  V  Q  :  A  L  K  M  *  R  T  S  F  L  L  *  R  I  V  Q  Q  G  L  V  V  A  L  T  L  *  A  I  R :   *  H  I  V  F  Y  S  P  L  W  W  L  S  Y  Q  M  H  *  V  Q  Y  L  I  K  H  Q  S  C  P  V  M  Q  L  L  G  R  N  F  R  N  L :   *  W  S  L  G  M  I  L  L  L  R  A  I  L  I  A  *  G  V  H  G  L  Y  I  L  C  *  Y  M  T  G  L  M  Q  K  I  H  Q  Q  L  L  H  Q  I  M  I  *  G  T  S  I  H  A  W  K  L  Y  S  P  T  M  S  S  C  L  G  *  I  R  S  S  *  L  L  P  I  R :   M  M  M  R  I  *  S  T  C  T  M  P  I  C  T  R  *  *  H  A  F  C  L  I  H  W  P  R  T  R :   L  K  K  Q  K  R  R  L  *  R  H  L  V  R  T  A  C  L  L  H  M  I  I  L  W  R  E  L  G  I  F  K  R  P  L  N  L  H  H  K  L  L  S  L  S  W  S  L  *  V  K  F  T  R  L  V  P  F  L  A  N  F  G  V  P  R  A  L  S  L  R  K  G  M  N  G  D  T  K  L  I  L  Y  F  N  T  *  N  S  *  I  W  K  T  I  Q  N  Y  L  S  I  N  K  I  R  V </first_frame>
            <second_frame>  V  H  Q  F  S  S  Y  F  F  Y  F  T  I  Q  K  P  *  T  R  A  F  L  P  A  F  F  L  T  L  T  V  S  V  P  V  N  G  A  E  E  Y  T  Q  I  P  V  N  R  A  E  E  Y  T  Q  I  P  V  N  G  A  E  T  Y  A  E  I  P  V  S  G  D  *  S  *  E  *  Q  R  N  N  G  L  P  E  D  F  T  I  S  N  *  I  Y  C  I  E  S  H  T  S  Y  A  I  G  E  D  R  A  A  S  R  H  S  S  L  S  S  I  F  P  V  T  T  F  L  S   : A  P  Q  A  L  G  P  S  S  S  P  V  Q  R  S  E  T  S  R  F  W  P  N  F  T  G  *  S  G  C  S  N   : C  P  K  V  K  *  *  S  T  S  *  *  S  R  L  C  S  V  A  C  F  C  Q  S  R   : V  G  I  I  G  T  *  A  I  R  D  I  P  P  R  S  W  T  V  V  Y  R  E  K  R  S  Y  N  S  T  L  H  T  V  E   : G  C  C  P  *  S  R  T  G  T  *  S  C  G  R  Y  S  E  I  F  G  R  S  H  *  C  W  S  *  K  A  V  N  L  T  H  K   : G  T  Q  S  R  R  A  I  W  F  G  W  A  *  L  *  T  L  Y  S  *  F  K  R  S  F  G  G  K  E  S  C  C  F  Q  G  K  A  H  S  G  S  L  P  C  P  F  C  F  G  G  A  C  K :   P  *  R  C  E  G  R  L  F  Y  S  K  G  *  C  S  R  A  *  W  *  H  *  H  F  K  P  S   : D  N  I  *  S  S  I  L  P  C  G  G  S  H  I  R  C  I  E  C  S  T  *  *  N  I  S  L  V  P  *  C  S  F  *  A  G  I  S  G  I   : C  N  G  H  W  E  *  S  C  C  *  G  L  F  *  L  L  K  E  C  M  G  C  T  S  Y  A  N  T  *  R  D  *  C  K  R  Y  I  S  N  C  F  I  K  *  *  Y  K  E  H  L  F  M  L  G  S  Y  I  L  Q  Q  C  L  P  V  L  A  E  *  D  P  P  N  S  C  L  S   : E  *  *  *  G  Y  D  L  H  V  Q  C  L  F  A  Q  D  D  N  M  P  F  V  S  S  I  G  Q  G  Q   : G  *  R  S  K  R  E  G  Y  D  G  T  W  S  V  P  L  V  Y  F  T  *  S  Y  C  G  G  N  W  A  F  S  K  G  H  *  T  C  T  T  N  F  C  L  S  L  G  V  C  E  *  N  L  P  G  *  C  L  F  L  L  I  L  E  S  L  G  H  Y  H  Y  E  K  V  *  T  V  I  P  N  *  F  C  I  S  T  H  K  T  L  E  Y  G  K  Q  F  K  T  I  F  P  L  I  K  Y  E   </second_frame>
            <third_frame>   Y  T  N  F  H  L  T  F  F  I  L  Q  Y  K  N  P  K  L  G  L  F  F  P  P  S  S  S  L  S  L  C  Q  F  R  *  T  E  L  K  S  T  H  R  F  R  *  T  E  L  K  S  T  H  R  F  R  *  T  E  L  K  P  T  Q  R  F  R  *  A  E  I  K  A  E  S  N  R  E  T  M  V  S  L  K  I  L  L  S  L  I  E  S  T  V  L  N  P  T  P  P  T  P  S  E  R  I  E  L  L  H  A  I  R  H  S  L  P  S  F  Q  S  L  L  S  Y  P  :  P  P  K  P  S  D  R  V  Q  V  Q  S  K  E  V  R  L  P  D  S  G  P  I  S  L  D  D  Q  D  V  Q  I  :  A  L  K  L  S  D  D  L  H  L  N  E  V  D  S  V  R  L  L  V  S  A  N  Q  E  :  W  G  L  L  G  R  E  P  L  E  I  F  R  L  A  A  G  L  W  Y  T  E  R  R  D  L  I  T  A  L  Y  T  L  L  R  :  A  V  V  L  D  Q  G  L  E  P  D  L  V  A  D  I  Q  R  F  L  D  D  L  I  N  A  G  V  R  K  R  L  I  S  L  I  K  :  E  L  N  R  E  E  P  S  G  L  G  G  P  N  C  E  R  Y  I  L  D  S  R  G  A  L  V  E  R  R  A  V  V  S  R  E  R  L  I  L  A  H  C  L  V  L  S  V  L  V  V  R  A   : S  P  K  D  V  K  D  V  F  S  T  L  K  D  S  A  A  G  L  S  G  S  T  D  T  L  S  H  Q  :  I  T  Y  S  L  L  F  S  L  V  V  A  L  I  S  D  A  L  S  A  V  P  D  K  T  S  V  L  S  R  D  A  A  F  R  Q  E  F  Q  E  S  :  V  M  V  T  G  N  D  P  V  V  E  G  Y  F  D  C  L  R  S  A  W  V  V  H  L  M  L  I  H  D  G  I  D  A  K  D  T  S  A  T  A  S  S  N  N  D  I  R  N  I  Y  S  C  L  E  V  I  F  S  N  N  V  F  L  S  W  L  N  K  I  L  L  T  P  A  Y  Q  :  N  D  D  E  D  M  I  Y  M  Y  N  A  Y  L  H  K  M  I  T  C  L  L  S  H  P  L  A  K  D  K  :  V  K  E  A  K  E  K  A  M  T  A  L  G  P  Y  R  L  S  T  S  H  D  H  T  V  E  G  I  G  H  F  Q  K  A  T  E  P  A  P  Q  T  F  V  S  L  L  E  F  V  S  E  I  Y  Q  V  S  A  F  S  C  *  F  W  S  P  *  G  I  I  T  T  K  R  Y  E  R  *  Y  Q  I  D  F  V  F  Q  H  I  K  L  L  N  M  E  N  N  S  K  L  S  F  H  *  *  N  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58532" stop="58705"/>
                    <exon start="59357" stop="59452"/>
                    <exon start="61530" stop="61604"/>
                    <exon start="64121" stop="64225"/>
                    <exon start="64310" stop="64420"/>
                    <exon start="64838" stop="64997"/>
                    <exon start="66024" stop="66109"/>
                    <exon start="66674" stop="66796"/>
                    <exon start="66873" stop="67103"/>
                    <exon start="69388" stop="69477"/>
                    <exon start="70368" stop="70550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEIKAESNRETMVSLKILLSLIESTVLNPTPPTPSERIELLHAIRHSLPSFQSLLSYPPPKPSDRVQVQSKEVRLPDSGPISLDDQDVQIALKLSDDLHLNEVDSVRLLVSANQEWGLLGREPLEIFRLAAGLWYTERRDLITALYTLLRAVVLDQGLEPDLVADIQRFLDDLINAGVRKRLISLIKELNREEPSGLGGPNCERYILDSRGALVERRAVVSRERLILAHCLVLSVLVVRASPKDVKDVFSTLKDSAAGLSGSTDTLSHQITYSLLFSLVVALISDALSAVPDKTSVLSRDAAFRQEFQESVMVTGNDPVVEGYFDCLRSAWVVHLMLIHDGIDAKDTSATASSNNDIRNIYSCLEVIFSNNVFLSWLNKILLTPAYQNDDEDMIYMYNAYLHKMITCLLSHPLAKDKVKEAKEKAMTALGPYRLSTSHDHTVEGIGHFQKATEPAPQTFVSLLEFVSEIYQVSAFSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="79213" PGL_stop="83914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79213" e_stop="79255"/>
            <exon e_start="80533" e_stop="80625"/>
            <exon e_start="80709" e_stop="80822"/>
            <exon e_start="80963" e_stop="81133"/>
            <exon e_start="81239" e_stop="81294"/>
            <exon e_start="81375" e_stop="81447"/>
            <exon e_start="81546" e_stop="81736"/>
            <exon e_start="81841" e_stop="81967"/>
            <exon e_start="82101" e_stop="82178"/>
            <exon e_start="83804" e_stop="83914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.208" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.323" e_score="0.995"/>
          <exon-intron don_prob="0.539" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79213" e_stop="79255" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79256" i_stop="80532" i_length="1277"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80533" e_stop="80625" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80626" i_stop="80708" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80709" e_stop="80822" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.832">
            <gDNA_intron_boundary i_start="80823" i_stop="80962" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80963" e_stop="81133" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.848">
            <gDNA_intron_boundary i_start="81134" i_stop="81238" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81239" e_stop="81294" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.208">
            <gDNA_intron_boundary i_start="81295" i_stop="81374" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81375" e_stop="81447" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="81448" i_stop="81545" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="81546" e_stop="81736" e_length="191"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.323">
            <gDNA_intron_boundary i_start="81737" i_stop="81840" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81841" e_stop="81967" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.539" acc_prob="0.974">
            <gDNA_intron_boundary i_start="81968" i_stop="82100" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82101" e_stop="82178" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="82179" i_stop="83803" i_length="1625"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83804" e_stop="83914" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79213" stop="79255"/>
              <exon start="80533" stop="80625"/>
              <exon start="80709" stop="80822"/>
              <exon start="80963" stop="81133"/>
              <exon start="81239" stop="81294"/>
              <exon start="81375" stop="81447"/>
              <exon start="81546" stop="81736"/>
              <exon start="81841" stop="81896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79213" stop="79255"/>
              <exon start="80533" stop="80625"/>
              <exon start="80709" stop="80822"/>
              <exon start="80963" stop="81133"/>
              <exon start="81239" stop="81294"/>
              <exon start="81375" stop="81447"/>
              <exon start="81546" stop="81664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79225" stop="79255"/>
              <exon start="80533" stop="80625"/>
              <exon start="80709" stop="80822"/>
              <exon start="80963" stop="81133"/>
              <exon start="81239" stop="81294"/>
              <exon start="81375" stop="81447"/>
              <exon start="81546" stop="81736"/>
              <exon start="81841" stop="81925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79226" stop="79255"/>
              <exon start="80533" stop="80625"/>
              <exon start="80709" stop="80822"/>
              <exon start="80963" stop="81113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81050" stop="81133"/>
              <exon start="81239" stop="81294"/>
              <exon start="81375" stop="81447"/>
              <exon start="81546" stop="81706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81439" stop="81447"/>
              <exon start="81546" stop="81736"/>
              <exon start="81841" stop="81967"/>
              <exon start="82101" stop="82178"/>
              <exon start="83804" stop="83914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTCCTGGAGTGAACGGCGCCAGAATGATTAGTAAATCTAAG : GTATTGGAGTTGCTTGAAGTTGTCCAGTTCAAATCTCCTGATACTGTGTTGAAATCTTCACAAGCAGTTTCAAGCGCGAAGTATGGGTTTCTG : GCTGAAGATATACTTACCAATCCTGCTACTTCTGAAAAAGGTGGTGTTTATTACTACTCAGAACGTGGAGACCGTTTAATTGATCTAGCTGCATTTCGTGACAAATTATGGGAG : AAATACAACTTGTTTAATCCCCAGCATAGCTCCTTCAGCACTGAAGTTGAGCTAAATGAAATCCGAGATACAGTCCAACAGCTGTTACGATGGGGTTGGAAATACAACAAAAATCATGAAGAACAAGCAGCTCAGCTTCATATGTTAACTGGCTGGTCTCAAATTGTTGAG : GTCTCTGCCTCTAGCAAAATTTCCTCTCTTCCCAACCGTTCTGAAATATTATTTCA : GTTGCTTGATGCCTCTCTTGGTGCTTCTGGTTCTCCCGACTGCTCATTGAAGATGGCACTGATACTGACACAG : GTTGGTGTCACATGCATCGCCAAACTACGTGATGAAAGATTTTTATGCCCTAGTGGTTTAAACTCTGATACTGTCACTTGTCTTGACATCATGATGACAAAACAATTATCTAATGGAGCGTGCCATTCTATTCTATTCAAGCTTATACTGGCGATTCTCAGAAACGAATCATCAGAAGCATTGAGGAGGCG : CCAATATGCCTTGCTCCTTAGCTATATCCAGTACTGTCAACATATGCTTGATCCTGATCTTCCTACCACAGTAATGCAGTTATTGACAATGGATGAACAGGAAAATGATGATCAGGATCTTGAAAAG : ATTGTCAAAGATCAGACCGAAATGGCATATGCAAATTTTTCAATAATAAGGAAGGAGGCTCAATCACTTCTAGATCTG : ATCATAAAAGATGCAATCCATGGCAGCGAATCTGGAAAAACCATCTCGCTCTATGTTTTGGATGCTTTAATTTGCATTGATCATGAAAAGTTTTTCTTGAGTCAACTGCAG</gDNA_template>
            <first_frame> Q  S  W  S  E  R  R  Q  N  D  *  *  I  *   : G  I  G  V  A  *  S  C  P  V  Q  I  S  *  Y  C  V  E  I  F  T  S  S  F  K  R  E  V  W  V  S   : G  *  R  Y  T  Y  Q  S  C  Y  F  *  K  R  W  C  L  L  L  L  R  T  W  R  P  F  N  *  S  S  C  I  S  *  Q  I  M  G   : E  I  Q  L  V  *  S  P  A  *  L  L  Q  H  *  S  *  A  K  *  N  P  R  Y  S  P  T  A  V  T  M  G  L  E  I  Q  Q  K  S  *  R  T  S  S  S  A  S  Y  V  N  W  L  V  S  N  C  *   : G  L  C  L  *  Q  N  F  L  S  S  Q  P  F  *  N  I  I  S  :  V  A  *  C  L  S  W  C  F  W  F  S  R  L  L  I  E  D  G  T  D  T  D  T   : G  W  C  H  M  H  R  Q  T  T  *  *  K  I  F  M  P  *  W  F  K  L  *  Y  C  H  L  S  *  H  H  D  D  K  T  I  I  *  W  S  V  P  F  Y  S  I  Q  A  Y  T  G  D  S  Q  K  R  I  I  R  S  I  E  E  A  :  P  I  C  L  A  P  *  L  Y  P  V  L  S  T  Y  A  *  S  *  S  S  Y  H  S  N  A  V  I  D  N  G  *  T  G  K  *  *  S  G  S  *  K   : D  C  Q  R  S  D  R  N  G  I  C  K  F  F  N  N  K  E  G  G  S  I  T  S  R  S   : D  H  K  R  C  N  P  W  Q  R  I  W  K  N  H  L  A  L  C  F  G  C  F  N  L  H  *  S  *  K  V  F  L  E  S  T  A  </first_frame>
            <second_frame>  S  P  G  V  N  G  A  R  M  I  S  K  S  K  :  V  L  E  L  L  E  V  V  Q  F  K  S  P  D  T  V  L  K  S  S  Q  A  V  S  S  A  K  Y  G  F  L  :  A  E  D  I  L  T  N  P  A  T  S  E  K  G  G  V  Y  Y  Y  S  E  R  G  D  R  L  I  D  L  A  A  F  R  D  K  L  W  E  :  K  Y  N  L  F  N  P  Q  H  S  S  F  S  T  E  V  E  L  N  E  I  R  D  T  V  Q  Q  L  L  R  W  G  W  K  Y  N  K  N  H  E  E  Q  A  A  Q  L  H  M  L  T  G  W  S  Q  I  V  E  :  V  S  A  S  S  K  I  S  S  L  P  N  R  S  E  I  L  F  Q :   L  L  D  A  S  L  G  A  S  G  S  P  D  C  S  L  K  M  A  L  I  L  T  Q  :  V  G  V  T  C  I  A  K  L  R  D  E  R  F  L  C  P  S  G  L  N  S  D  T  V  T  C  L  D  I  M  M  T  K  Q  L  S  N  G  A  C  H  S  I  L  F  K  L  I  L  A  I  L  R  N  E  S  S  E  A  L  R  R  R :   Q  Y  A  L  L  L  S  Y  I  Q  Y  C  Q  H  M  L  D  P  D  L  P  T  T  V  M  Q  L  L  T  M  D  E  Q  E  N  D  D  Q  D  L  E  K  :  I  V  K  D  Q  T  E  M  A  Y  A  N  F  S  I  I  R  K  E  A  Q  S  L  L  D  L  :  I  I  K  D  A  I  H  G  S  E  S  G  K  T  I  S  L  Y  V  L  D  A  L  I  C  I  D  H  E  K  F  F  L  S  Q  L  Q </second_frame>
            <third_frame>   V  L  E  *  T  A  P  E  *  L  V  N  L  R :   Y  W  S  C  L  K  L  S  S  S  N  L  L  I  L  C  *  N  L  H  K  Q  F  Q  A  R  S  M  G  F  W :   L  K  I  Y  L  P  I  L  L  L  L  K  K  V  V  F  I  T  T  Q  N  V  E  T  V  *  L  I  *  L  H  F  V  T  N  Y  G  R :   N  T  T  C  L  I  P  S  I  A  P  S  A  L  K  L  S  *  M  K  S  E  I  Q  S  N  S  C  Y  D  G  V  G  N  T  T  K  I  M  K  N  K  Q  L  S  F  I  C  *  L  A  G  L  K  L  L  R :   S  L  P  L  A  K  F  P  L  F  P  T  V  L  K  Y  Y  F   : S  C  L  M  P  L  L  V  L  L  V  L  P  T  A  H  *  R  W  H  *  Y  *  H  R :   L  V  S  H  A  S  P  N  Y  V  M  K  D  F  Y  A  L  V  V  *  T  L  I  L  S  L  V  L  T  S  *  *  Q  N  N  Y  L  M  E  R  A  I  L  F  Y  S  S  L  Y  W  R  F  S  E  T  N  H  Q  K  H  *  G  G   : A  N  M  P  C  S  L  A  I  S  S  T  V  N  I  C  L  I  L  I  F  L  P  Q  *  C  S  Y  *  Q  W  M  N  R  K  M  M  I  R  I  L  K  R :   L  S  K  I  R  P  K  W  H  M  Q  I  F  Q  *  *  G  R  R  L  N  H  F  *  I  * :   S  *  K  M  Q  S  M  A  A  N  L  E  K  P  S  R  S  M  F  W  M  L  *  F  A  L  I  M  K  S  F  S  *  V  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79214" stop="79255"/>
                    <exon start="80533" stop="80625"/>
                    <exon start="80709" stop="80822"/>
                    <exon start="80963" stop="81133"/>
                    <exon start="81239" stop="81294"/>
                    <exon start="81375" stop="81447"/>
                    <exon start="81546" stop="81736"/>
                    <exon start="81841" stop="81967"/>
                    <exon start="82101" stop="82178"/>
                    <exon start="83804" stop="83914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPGVNGARMISKSKVLELLEVVQFKSPDTVLKSSQAVSSAKYGFLAEDILTNPATSEKGGVYYYSERGDRLIDLAAFRDKLWEKYNLFNPQHSSFSTEVELNEIRDTVQQLLRWGWKYNKNHEEQAAQLHMLTGWSQIVEVSASSKISSLPNRSEILFQLLDASLGASGSPDCSLKMALILTQVGVTCIAKLRDERFLCPSGLNSDTVTCLDIMMTKQLSNGACHSILFKLILAILRNESSEALRRRQYALLLSYIQYCQHMLDPDLPTTVMQLLTMDEQENDDQDLEKIVKDQTEMAYANFSIIRKEAQSLLDLIIKDAIHGSESGKTISLYVLDALICIDHEKFFLSQLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85213" PGL_stop="88832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85213" e_stop="85369"/>
            <exon e_start="85443" e_stop="85580"/>
            <exon e_start="85953" e_stop="86096"/>
            <exon e_start="86264" e_stop="86386"/>
            <exon e_start="86506" e_stop="86601"/>
            <exon e_start="86752" e_stop="86889"/>
            <exon e_start="86969" e_stop="87069"/>
            <exon e_start="87689" e_stop="87808"/>
            <exon e_start="87887" e_stop="87986"/>
            <exon e_start="88430" e_stop="88832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.678" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85213" e_stop="85369" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85370" i_stop="85442" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85443" e_stop="85580" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.755" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85581" i_stop="85952" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85953" e_stop="86096" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="86097" i_stop="86263" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86264" e_stop="86386" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86387" i_stop="86505" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86506" e_stop="86601" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86602" i_stop="86751" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86752" e_stop="86889" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.912" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86890" i_stop="86968" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86969" e_stop="87069" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.678" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87070" i_stop="87688" i_length="619"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87689" e_stop="87808" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.939" acc_prob="0.783">
            <gDNA_intron_boundary i_start="87809" i_stop="87886" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87887" e_stop="87986" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87987" i_stop="88429" i_length="443"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="88430" e_stop="88832" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85213" stop="85369"/>
              <exon start="85443" stop="85580"/>
              <exon start="85953" stop="86096"/>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85230" stop="85369"/>
              <exon start="85443" stop="85580"/>
              <exon start="85953" stop="86096"/>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85230" stop="85369"/>
              <exon start="85443" stop="85580"/>
              <exon start="85953" stop="86096"/>
              <exon start="86264" stop="86338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85295" stop="85369"/>
              <exon start="85443" stop="85580"/>
              <exon start="85953" stop="86096"/>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86096"/>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86601"/>
              <exon start="86752" stop="86889"/>
              <exon start="86969" stop="87069"/>
              <exon start="87689" stop="87759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86601"/>
              <exon start="86752" stop="86889"/>
              <exon start="86969" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86264" stop="86386"/>
              <exon start="86506" stop="86601"/>
              <exon start="86752" stop="86858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86590" stop="86601"/>
              <exon start="86752" stop="86889"/>
              <exon start="86969" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86843" stop="86889"/>
              <exon start="86969" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86843" stop="86889"/>
              <exon start="86969" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86988" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86997" stop="87069"/>
              <exon start="87689" stop="87808"/>
              <exon start="87887" stop="87986"/>
              <exon start="88430" stop="88689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAGAGTCAATGCAGCGTGTCTGCACTCTTGAAGCGGAACTTGCTCTTCTTCTGAGAATTAGCCACAAGTATGGTAAATCTGGGGCCCAGGTGCTTTTTTCAATGGGTGCATATGAGCACATATCTGCCTGTAAGGCACTAAATATGCAATTGAAG : GGAAGCTACCGGCGCATGGATGGCAAATTTGGAAGAGAACTGTCAGTTGATGTTGATAAACAGCGAATGATAATAGCTCCAATCTTGAGATTGGTGTTTTCACTTACTTCATTGGTTGATGCATCTGAATTTTTTGAG : GTTAAAAACAAAGTTGTACGTGAAGTCATTGAATTTGTAAGAAGTCATCAATTACTTTTTGATCAAATCCTACGAGAAGATCTTTCTGATGCTGATGTCTTGACAATGGAACAAATAAATTTGGTTGTTGGCATACTTACGAAG : ATTTGGCCATATGAAGAGACCGATGAATATGGTTTTGTTCAAGGGCTTTTTGTGATGATGCGTTTTCTTTTCTCTCGTGAGCCAGACTCTTTTATTACAAACCAATCTATGGATTTTCTGGAG : GAACGTCGGAAGGCAGAAATGAATGCATCTCGTCTTTGCTTTAGCCTGAGTTCTTATCTCTGTTTTCTTGTTACGAAGAAGTCTTTAAGATTGCCG : GTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTCAGCAACAGCCAACATTGAATTTACTTGGTTTTCTTCTCAACTCGCTGACTACAGCATTGGAAAGAGCTACTGAGGACAGATATTTATTGCTTAGCAAG : ATTCAAGACATAAATGAACTTTCAAGACAGGAAGTGGATGAAATCATCAATATGTGTGTTCCCAAGGGTTGTATTTCGTCGTCCGAGAACATTCAGAAAAG : GAGATATGTCGCGATGTTGGAGATGTGCCAGATTGTTGGAGATAGGAATCAACTTATGACACTATTGCTTTTACTAGCGGAAAACGTGATGAATATTATCCTTGTTCATTTTCAGGACAG : TTCTTTTGAATGTGACAACAAACGCTACTCAAAAGATGACTTGAATTTGCTATGTGGAAAGTTAATTTCAGCTTTGGAGAGGCTTGAATTACTAAGCGAG : GATAAAACAGGTCATGACCTTAAAGTATTTCGAAGATTAGCTAGTTCTCTGAAAGAAATATCGATTCAGAAGTCACCTGTTTGACCGGCCATCTCCTTCTTTTGTTCTTTCATAAATTTTTAGCATAGGGGGGTATGAGGAATTTAGTTGTAATGTAATTGTATATTTATCTTTTACATAGTGCTTGTCCTATATTTTTTTAATCCTCCAATCTGTTGTACATATTGTATATCATACTTACAGCCTCTTTTGTGCTTTTTGTGGGGGAGTTCTGAATGTTACAGAAGACAGATTACACTAGAAGGCTATTAGTAGTTATACTCCTATAGGTCTTGCCCCTTATTTATAGGTTTCTGCACTTCAATTATCATATTATTTTGTGTATTTACTGTTCAGAATGTCT</gDNA_template>
            <first_frame> V  R  V  N  A  A  C  L  H  S  *  S  G  T  C  S  S  S  E  N  *  P  Q  V  W  *  I  W  G  P  G  A  F  F  N  G  C  I  *  A  H  I  C  L  *  G  T  K  Y  A  I  E   : G  K  L  P  A  H  G  W  Q  I  W  K  R  T  V  S  *  C  *  *  T  A  N  D  N  S  S  N  L  E  I  G  V  F  T  Y  F  I  G  *  C  I  *  I  F  *   : G  *  K  Q  S  C  T  *  S  H  *  I  C  K  K  S  S  I  T  F  *  S  N  P  T  R  R  S  F  *  C  *  C  L  D  N  G  T  N  K  F  G  C  W  H  T  Y  E   : D  L  A  I  *  R  D  R  *  I  W  F  C  S  R  A  F  C  D  D  A  F  S  F  L  S  *  A  R  L  F  Y  Y  K  P  I  Y  G  F  S  G   : G  T  S  E  G  R  N  E  C  I  S  S  L  L  *  P  E  F  L  S  L  F  S  C  Y  E  E  V  F  K  I  A   : G  L  R  W  S  N  G  L  S  H  F  C  W  S  A  T  A  N  I  E  F  T  W  F  S  S  Q  L  A  D  Y  S  I  G  K  S  Y  *  G  Q  I  F  I  A  *  Q   : D  S  R  H  K  *  T  F  K  T  G  S  G  *  N  H  Q  Y  V  C  S  Q  G  L  Y  F  V  V  R  E  H  S  E  K  :  E  I  C  R  D  V  G  D  V  P  D  C  W  R  *  E  S  T  Y  D  T  I  A  F  T  S  G  K  R  D  E  Y  Y  P  C  S  F  S  G  Q  :  F  F  *  M  *  Q  Q  T  L  L  K  R  *  L  E  F  A  M  W  K  V  N  F  S  F  G  E  A  *  I  T  K  R   : G  *  N  R  S  *  P  *  S  I  S  K  I  S  *  F  S  E  R  N  I  D  S  E  V  T  C  L  T  G  H  L  L  L  L  F  F  H  K  F  L  A  *  G  G  M  R  N  L  V  V  M  *  L  Y  I  Y  L  L  H  S  A  C  P  I  F  F  *  S  S  N  L  L  Y  I  L  Y  I  I  L  T  A  S  F  V  L  F  V  G  E  F  *  M  L  Q  K  T  D  Y  T  R  R  L  L  V  V  I  L  L  *  V  L  P  L  I  Y  R  F  L  H  F  N  Y  H  I  I  L  C  I  Y  C  S  E  C   </first_frame>
            <second_frame>  L  E  S  M  Q  R  V  C  T  L  E  A  E  L  A  L  L  L  R  I  S  H  K  Y  G  K  S  G  A  Q  V  L  F  S  M  G  A  Y  E  H  I  S  A  C  K  A  L  N  M  Q  L  K  :  G  S  Y  R  R  M  D  G  K  F  G  R  E  L  S  V  D  V  D  K  Q  R  M  I  I  A  P  I  L  R  L  V  F  S  L  T  S  L  V  D  A  S  E  F  F  E  :  V  K  N  K  V  V  R  E  V  I  E  F  V  R  S  H  Q  L  L  F  D  Q  I  L  R  E  D  L  S  D  A  D  V  L  T  M  E  Q  I  N  L  V  V  G  I  L  T  K  :  I  W  P  Y  E  E  T  D  E  Y  G  F  V  Q  G  L  F  V  M  M  R  F  L  F  S  R  E  P  D  S  F  I  T  N  Q  S  M  D  F  L  E  :  E  R  R  K  A  E  M  N  A  S  R  L  C  F  S  L  S  S  Y  L  C  F  L  V  T  K  K  S  L  R  L  P  :  V  S  D  G  R  M  D  Y  R  T  S  A  G  Q  Q  Q  P  T  L  N  L  L  G  F  L  L  N  S  L  T  T  A  L  E  R  A  T  E  D  R  Y  L  L  L  S  K  :  I  Q  D  I  N  E  L  S  R  Q  E  V  D  E  I  I  N  M  C  V  P  K  G  C  I  S  S  S  E  N  I  Q  K  R :   R  Y  V  A  M  L  E  M  C  Q  I  V  G  D  R  N  Q  L  M  T  L  L  L  L  L  A  E  N  V  M  N  I  I  L  V  H  F  Q  D  S :   S  F  E  C  D  N  K  R  Y  S  K  D  D  L  N  L  L  C  G  K  L  I  S  A  L  E  R  L  E  L  L  S  E  :  D  K  T  G  H  D  L  K  V  F  R  R  L  A  S  S  L  K  E  I  S  I  Q  K  S  P  V  *  P  A  I  S  F  F  C  S  F  I  N  F  *  H  R  G  V  *  G  I  *  L  *  C  N  C  I  F  I  F  Y  I  V  L  V  L  Y  F  F  N  P  P  I  C  C  T  Y  C  I  S  Y  L  Q  P  L  L  C  F  L  W  G  S  S  E  C  Y  R  R  Q  I  T  L  E  G  Y  *  *  L  Y  S  Y  R  S  C  P  L  F  I  G  F  C  T  S  I  I  I  L  F  C  V  F  T  V  Q  N  V  </second_frame>
            <third_frame>   *  S  Q  C  S  V  S  A  L  L  K  R  N  L  L  F  F  *  E  L  A  T  S  M  V  N  L  G  P  R  C  F  F  Q  W  V  H  M  S  T  Y  L  P  V  R  H  *  I  C  N  *  R :   E  A  T  G  A  W  M  A  N  L  E  E  N  C  Q  L  M  L  I  N  S  E  *  *  *  L  Q  S  *  D  W  C  F  H  L  L  H  W  L  M  H  L  N  F  L  R :   L  K  T  K  L  Y  V  K  S  L  N  L  *  E  V  I  N  Y  F  L  I  K  S  Y  E  K  I  F  L  M  L  M  S  *  Q  W  N  K  *  I  W  L  L  A  Y  L  R  R :   F  G  H  M  K  R  P  M  N  M  V  L  F  K  G  F  L  *  *  C  V  F  F  S  L  V  S  Q  T  L  L  L  Q  T  N  L  W  I  F  W  R :   N  V  G  R  Q  K  *  M  H  L  V  F  A  L  A  *  V  L  I  S  V  F  L  L  R  R  S  L  *  D  C  R :   S  Q  M  V  E  W  T  I  A  L  L  L  V  S  N  S  Q  H  *  I  Y  L  V  F  F  S  T  R  *  L  Q  H  W  K  E  L  L  R  T  D  I  Y  C  L  A  R :   F  K  T  *  M  N  F  Q  D  R  K  W  M  K  S  S  I  C  V  F  P  R  V  V  F  R  R  P  R  T  F  R  K   : G  D  M  S  R  C  W  R  C  A  R  L  L  E  I  G  I  N  L  *  H  Y  C  F  Y  *  R  K  T  *  *  I  L  S  L  F  I  F  R  T   : V  L  L  N  V  T  T  N  A  T  Q  K  M  T  *  I  C  Y  V  E  S  *  F  Q  L  W  R  G  L  N  Y  *  A  R :   I  K  Q  V  M  T  L  K  Y  F  E  D  *  L  V  L  *  K  K  Y  R  F  R  S  H  L  F  D  R  P  S  P  S  F  V  L  S  *  I  F  S  I  G  G  Y  E  E  F  S  C  N  V  I  V  Y  L  S  F  T  *  C  L  S  Y  I  F  L  I  L  Q  S  V  V  H  I  V  Y  H  T  Y  S  L  F  C  A  F  C  G  G  V  L  N  V  T  E  D  R  L  H  *  K  A  I  S  S  Y  T  P  I  G  L  A  P  Y  L  *  V  S  A  L  Q  L  S  Y  Y  F  V  Y  L  L  F  R  M  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85214" stop="85369"/>
                    <exon start="85443" stop="85580"/>
                    <exon start="85953" stop="86096"/>
                    <exon start="86264" stop="86386"/>
                    <exon start="86506" stop="86601"/>
                    <exon start="86752" stop="86889"/>
                    <exon start="86969" stop="87069"/>
                    <exon start="87689" stop="87808"/>
                    <exon start="87887" stop="87986"/>
                    <exon start="88430" stop="88513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LESMQRVCTLEAELALLLRISHKYGKSGAQVLFSMGAYEHISACKALNMQLKGSYRRMDGKFGRELSVDVDKQRMIIAPILRLVFSLTSLVDASEFFEVKNKVVREVIEFVRSHQLLFDQILREDLSDADVLTMEQINLVVGILTKIWPYEETDEYGFVQGLFVMMRFLFSREPDSFITNQSMDFLEERRKAEMNASRLCFSLSSYLCFLVTKKSLRLPVSDGRMDYRTSAGQQQPTLNLLGFLLNSLTTALERATEDRYLLLSKIQDINELSRQEVDEIINMCVPKGCISSSENIQKRRYVAMLEMCQIVGDRNQLMTLLLLLAENVMNIILVHFQDSSFECDNKRYSKDDLNLLCGKLISALERLELLSEDKTGHDLKVFRRLASSLKEISIQKSPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="101642" PGL_stop="94798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101642" e_stop="101614"/>
            <exon e_start="101489" e_stop="101408"/>
            <exon e_start="101105" e_stop="101033"/>
            <exon e_start="99802" e_stop="99705"/>
            <exon e_start="99481" e_stop="99389"/>
            <exon e_start="99088" e_stop="99015"/>
            <exon e_start="98901" e_stop="98863"/>
            <exon e_start="98494" e_stop="98406"/>
            <exon e_start="98278" e_stop="98202"/>
            <exon e_start="97962" e_stop="97888"/>
            <exon e_start="97359" e_stop="97228"/>
            <exon e_start="97004" e_stop="96917"/>
            <exon e_start="96824" e_stop="96746"/>
            <exon e_start="96669" e_stop="96579"/>
            <exon e_start="96447" e_stop="96369"/>
            <exon e_start="96271" e_stop="96156"/>
            <exon e_start="95891" e_stop="95570"/>
            <exon e_start="94829" e_stop="94798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.599" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.304" e_score="0.860"/>
          <exon-only e_score="0.344"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101642" e_stop="101614" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101408" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101105" e_stop="101033" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.760" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99802" e_stop="99705" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99481" e_stop="99389" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99088" e_stop="99015" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98901" e_stop="98863" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98494" e_stop="98406" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="98278" e_stop="98202" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97962" e_stop="97888" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97359" e_stop="97228" e_length="132"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97004" e_stop="96917" e_length="88"/>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97310" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97302" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97253" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97240" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96982" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281585" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96954" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96952" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96932" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96924" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96803" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96758" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96621" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95570"/>
              <exon start="94829" stop="94798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326922" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96608" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267342" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96587" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96582" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96415" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96400" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96258" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96256" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96243" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTCAAGGAATGGCCAAGACTAATGG : ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG : GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG : GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG : GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG : GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC : ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG : GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG : GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA : GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG : ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> K  L  Q  G  M  A  K  T  N  G :   F  M  G  H  D  M  L  A  P  F  T  A  A  W  M  I  D  M  G  P  L  V  I  D  K  A  E  :  G  S  Y  V  Y  D  V  N  G  K  K  Y  L  D  S  L  S  G  L  W  C  S  V  L   : G  G  S  E  P  R  L  I  E  A  A  N  K  Q  L  N  K  L  A  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  I  N  M  F  T  A  N  K  M  G  K  V  F  F  T  S  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  I  G  R  P  N  K  K  K  I  I  S  R  K  N  A :   Y  H  G  S  T  Y  M  T  A  G  L  S  G :   L  P  S  L  H  L  K  F  D  L  P  P  P  Y  I  L  H  T  D  C  P  H  Y  W  N  Y  H  L  P   : G  E  T  E  E  E  Y  S  T  R  L  A  N  N  L  E  N  L  I  L  K  E  G  P  E  T  :  V  A  A  F  I  A  E  P  V  M  G  G  A  G  V  I  I  P  P  A  T  Y  F  E  K  :  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </first_frame>
            <second_frame>  S  F  K  E  W  P  R  L  M   : D  L  W  D  M  I  C  W  H  H  L  L  R  H  G  *  L  I  W  D  L  *  L  *  I  K  R  R :   V  L  M  S  M  T  *  M  E  R  S  T  L  I  L  Y  L  V  Y  G  A  Q  Y  *  :  G  G  V  S  L  V  L  L  K  L  Q  I  N  N  S  I  N  W  H  F  T  T  H  F  G  I  V  P  Q  S  L  L  W :   I  L  Q  R  S  S  *  I  C  L  L  Q  I  R  W  E  K  F  F  S  Q  V  V  D  Q  K  L  M  T  L  R :   *  S  W  C  G  I  T  T  M  P  L  G  G  Q  T  K  R  K  L  F  L  E  K  M   : H  T  M  A  P  L  I  *  L  P  V  S  P   : G  F  H  H  Y  I  *  N  L  I  Y  H  L  H  I  F  F  T  L  I  A  L  I  I  G  T  I  T  C  Q  :  V  R  Q  K  R  S  T  Q  L  G  W  Q  I  I  W  K  I  L  Y  S  K  R  V  L  K  Q :   L  L  L  S  L  R  N  Q  S  W  E  E  Q  V  L  *  F  L  Q  L  L  I  S  K  R :   F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </second_frame>
            <third_frame>   A  S  R  N  G  Q  D  *  W  :  I  Y  G  T  *  Y  V  G  T  I  Y  C  G  M  D  D  *  Y  G  T  F  S  Y  R  *  S  G   : G  F  L  C  L  *  R  K  W  K  E  V  P  *  F  F  I  W  F  M  V  L  S  I  R :   G  E  *  A  S  S  Y  *  S  C  K  *  T  T  Q  *  I  G  I  L  P  L  I  L  E  S  Y  H  K  A  F  F   : G  S  C  K  G  A  H  K  Y  V  Y  C  K  *  D  G  K  S  F  F  H  K  *  W  I  R  S  *  *  H  S   : G  E  V  G  V  V  L  Q  Q  C  H  W  E  A  K  Q  K  E  N  Y  F  S  K  K  C  :  I  P  W  L  H  L  Y  D  C  R  S  L  R  :  A  S  I  T  T  S  K  I  *  F  T  T  S  I  Y  S  S  H  *  L  P  S  L  L  E  L  S  L  A  R :   *  D  R  R  G  V  L  N  *  V  G  K  *  F  G  K  S  Y  T  Q  R  G  S  *  N   : S  C  C  F  H  C  G  T  S  H  G  R  S  R  C  Y  N  S  S  S  Y  L  F  R  K   : D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
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                  <frame>0</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
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              </id_line>
              <predicted_protein_sequence>KLQGMAKTNGFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKKYLDSLSGLWCSVLGGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDTQVKLVWYYNNAIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
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            <referenceDNA id="SGN-E203383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96582" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96415" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96400" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96258" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96256" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96243" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAATTGAGGAAAAAATATATTTATTATGATAAAAATATATTTATTATGATAAAGTTCAATTACTTTACTATGATTTTTATTTTTATTTATATAATTTTACAGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG : GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG : GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG : GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG : GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC : ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG : GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG : GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA : GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG : ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> L  N  *  G  K  N  I  F  I  M  I  K  I  Y  L  L  *  *  S  S  I  T  L  L  *  F  L  F  L  F  I  *  F  Y  R  F  M  G  H  D  M  L  A  P  F  T  A  A  W  M  I  D  M  G  P  L  V  I  D  K  A  E  :  G  S  Y  V  Y  D  V  N  G  K  K  Y  L  D  S  L  S  G  L  W  C  S  V  L   : G  G  S  E  P  R  L  I  E  A  A  N  K  Q  L  N  K  L  A  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  I  N  M  F  T  A  N  K  M  G  K  V  F  F  T  S  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  I  G  R  P  N  K  K  K  I  I  S  R  K  N  A :   Y  H  G  S  T  Y  M  T  A  G  L  S  G :   L  P  S  L  H  L  K  F  D  L  P  P  P  Y  I  L  H  T  D  C  P  H  Y  W  N  Y  H  L  P   : G  E  T  E  E  E  Y  S  T  R  L  A  N  N  L  E  N  L  I  L  K  E  G  P  E  T  :  V  A  A  F  I  A  E  P  V  M  G  G  A  G  V  I  I  P  P  A  T  Y  F  E  K  :  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </first_frame>
            <second_frame>  *  I  E  E  K  I  Y  L  L  *  *  K  Y  I  Y  Y  D  K  V  Q  L  L  Y  Y  D  F  Y  F  Y  L  Y  N  F  T  D  L  W  D  M  I  C  W  H  H  L  L  R  H  G  *  L  I  W  D  L  *  L  *  I  K  R  R :   V  L  M  S  M  T  *  M  E  R  S  T  L  I  L  Y  L  V  Y  G  A  Q  Y  *  :  G  G  V  S  L  V  L  L  K  L  Q  I  N  N  S  I  N  W  H  F  T  T  H  F  G  I  V  P  Q  S  L  L  W :   I  L  Q  R  S  S  *  I  C  L  L  Q  I  R  W  E  K  F  F  S  Q  V  V  D  Q  K  L  M  T  L  R :   *  S  W  C  G  I  T  T  M  P  L  G  G  Q  T  K  R  K  L  F  L  E  K  M   : H  T  M  A  P  L  I  *  L  P  V  S  P   : G  F  H  H  Y  I  *  N  L  I  Y  H  L  H  I  F  F  T  L  I  A  L  I  I  G  T  I  T  C  Q  :  V  R  Q  K  R  S  T  Q  L  G  W  Q  I  I  W  K  I  L  Y  S  K  R  V  L  K  Q :   L  L  L  S  L  R  N  Q  S  W  E  E  Q  V  L  *  F  L  Q  L  L  I  S  K  R :   F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </second_frame>
            <third_frame>   K  L  R  K  K  Y  I  Y  Y  D  K  N  I  F  I  M  I  K  F  N  Y  F  T  M  I  F  I  F  I  Y  I  I  L  Q  I  Y  G  T  *  Y  V  G  T  I  Y  C  G  M  D  D  *  Y  G  T  F  S  Y  R  *  S  G   : G  F  L  C  L  *  R  K  W  K  E  V  P  *  F  F  I  W  F  M  V  L  S  I  R :   G  E  *  A  S  S  Y  *  S  C  K  *  T  T  Q  *  I  G  I  L  P  L  I  L  E  S  Y  H  K  A  F  F   : G  S  C  K  G  A  H  K  Y  V  Y  C  K  *  D  G  K  S  F  F  H  K  *  W  I  R  S  *  *  H  S   : G  E  V  G  V  V  L  Q  Q  C  H  W  E  A  K  Q  K  E  N  Y  F  S  K  K  C  :  I  P  W  L  H  L  Y  D  C  R  S  L  R  :  A  S  I  T  T  S  K  I  *  F  T  T  S  I  Y  S  S  H  *  L  P  S  L  L  E  L  S  L  A  R :   *  D  R  R  G  V  L  N  *  V  G  K  *  F  G  K  S  Y  T  Q  R  G  S  *  N   : S  C  C  F  H  C  G  T  S  H  G  R  S  R  C  Y  N  S  S  S  Y  L  F  R  K   : D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101497" stop="101408"/>
                    <exon start="101105" stop="101033"/>
                    <exon start="99802" stop="99705"/>
                    <exon start="99481" stop="99389"/>
                    <exon start="99088" stop="99015"/>
                    <exon start="98901" stop="98863"/>
                    <exon start="98494" stop="98406"/>
                    <exon start="98278" stop="98202"/>
                    <exon start="97962" stop="97888"/>
                    <exon start="97359" stop="97228"/>
                    <exon start="97004" stop="96917"/>
                    <exon start="96824" stop="96746"/>
                    <exon start="96669" stop="96579"/>
                    <exon start="96447" stop="96369"/>
                    <exon start="96271" stop="96156"/>
                    <exon start="95891" stop="95817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYRFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKKYLDSLSGLWCSVLGGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDTQVKLVWYYNNAIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99803" e_stop="99705"/>
            <exon e_start="99481" e_stop="99389"/>
            <exon e_start="99088" e_stop="99015"/>
            <exon e_start="98901" e_stop="98863"/>
            <exon e_start="98494" e_stop="98406"/>
            <exon e_start="98278" e_stop="98202"/>
            <exon e_start="97962" e_stop="97888"/>
            <exon e_start="97359" e_stop="97228"/>
            <exon e_start="97004" e_stop="96917"/>
            <exon e_start="96824" e_stop="96746"/>
            <exon e_start="96669" e_stop="96579"/>
            <exon e_start="96447" e_stop="96369"/>
            <exon e_start="96271" e_stop="96156"/>
            <exon e_start="95891" e_stop="95570"/>
            <exon e_start="94829" e_stop="94798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.599" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.304" e_score="0.860"/>
          <exon-only e_score="0.344"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99803" e_stop="99705" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99481" e_stop="99389" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99088" e_stop="99015" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98901" e_stop="98863" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98494" e_stop="98406" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98278" e_stop="98202" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97962" e_stop="97888" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97359" e_stop="97228" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97004" e_stop="96917" e_length="88"/>
          </exon>
          <intron i_serial="9" don_prob="0.888" acc_prob="0.971">
            <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96824" e_stop="96746" e_length="79"/>
          </exon>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97353" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97341" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97310" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97302" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97253" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97240" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96982" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281585" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96954" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96952" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96932" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96924" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96803" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96758" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96621" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95570"/>
              <exon start="94829" stop="94798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326922" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96608" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267342" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96587" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96582" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96415" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96400" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96258" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96256" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96243" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG : GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG : GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC : ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG : GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG : GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA : GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG : ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> G  G  S  E  P  R  L  I  E  A  A  N  K  Q  L  N  K  L  A  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  I  N  M  F  T  A  N  K  M  G  K  V  F  F  T  S  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  I  G  R  P  N  K  K  K  I  I  S  R  K  N  A :   Y  H  G  S  T  Y  M  T  A  G  L  S  G :   L  P  S  L  H  L  K  F  D  L  P  P  P  Y  I  L  H  T  D  C  P  H  Y  W  N  Y  H  L  P   : G  E  T  E  E  E  Y  S  T  R  L  A  N  N  L  E  N  L  I  L  K  E  G  P  E  T  :  V  A  A  F  I  A  E  P  V  M  G  G  A  G  V  I  I  P  P  A  T  Y  F  E  K  :  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </first_frame>
            <second_frame>  G  G  V  S  L  V  L  L  K  L  Q  I  N  N  S  I  N  W  H  F  T  T  H  F  G  I  V  P  Q  S  L  L  W :   I  L  Q  R  S  S  *  I  C  L  L  Q  I  R  W  E  K  F  F  S  Q  V  V  D  Q  K  L  M  T  L  R :   *  S  W  C  G  I  T  T  M  P  L  G  G  Q  T  K  R  K  L  F  L  E  K  M   : H  T  M  A  P  L  I  *  L  P  V  S  P   : G  F  H  H  Y  I  *  N  L  I  Y  H  L  H  I  F  F  T  L  I  A  L  I  I  G  T  I  T  C  Q  :  V  R  Q  K  R  S  T  Q  L  G  W  Q  I  I  W  K  I  L  Y  S  K  R  V  L  K  Q :   L  L  L  S  L  R  N  Q  S  W  E  E  Q  V  L  *  F  L  Q  L  L  I  S  K  R :   F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </second_frame>
            <third_frame>   G  E  *  A  S  S  Y  *  S  C  K  *  T  T  Q  *  I  G  I  L  P  L  I  L  E  S  Y  H  K  A  F  F   : G  S  C  K  G  A  H  K  Y  V  Y  C  K  *  D  G  K  S  F  F  H  K  *  W  I  R  S  *  *  H  S   : G  E  V  G  V  V  L  Q  Q  C  H  W  E  A  K  Q  K  E  N  Y  F  S  K  K  C  :  I  P  W  L  H  L  Y  D  C  R  S  L  R  :  A  S  I  T  T  S  K  I  *  F  T  T  S  I  Y  S  S  H  *  L  P  S  L  L  E  L  S  L  A  R :   *  D  R  R  G  V  L  N  *  V  G  K  *  F  G  K  S  Y  T  Q  R  G  S  *  N   : S  C  C  F  H  C  G  T  S  H  G  R  S  R  C  Y  N  S  S  S  Y  L  F  R  K   : D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99803" stop="99705"/>
                    <exon start="99481" stop="99389"/>
                    <exon start="99088" stop="99015"/>
                    <exon start="98901" stop="98863"/>
                    <exon start="98494" stop="98406"/>
                    <exon start="98278" stop="98202"/>
                    <exon start="97962" stop="97888"/>
                    <exon start="97359" stop="97228"/>
                    <exon start="97004" stop="96917"/>
                    <exon start="96824" stop="96746"/>
                    <exon start="96669" stop="96579"/>
                    <exon start="96447" stop="96369"/>
                    <exon start="96271" stop="96156"/>
                    <exon start="95891" stop="95817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDTQVKLVWYYNNAIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="101642" e_stop="101614"/>
            <exon e_start="101489" e_stop="101408"/>
            <exon e_start="101105" e_stop="101033"/>
            <exon e_start="99802" e_stop="99705"/>
            <exon e_start="99481" e_stop="99389"/>
            <exon e_start="99088" e_stop="98863"/>
            <exon e_start="98494" e_stop="98406"/>
            <exon e_start="98278" e_stop="98202"/>
            <exon e_start="97962" e_stop="97888"/>
            <exon e_start="97359" e_stop="97228"/>
            <exon e_start="97004" e_stop="96917"/>
            <exon e_start="96824" e_stop="96746"/>
            <exon e_start="96669" e_stop="96579"/>
            <exon e_start="96447" e_stop="96369"/>
            <exon e_start="96271" e_stop="96156"/>
            <exon e_start="95891" e_stop="95570"/>
            <exon e_start="94829" e_stop="94798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.599" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.304" e_score="0.860"/>
          <exon-only e_score="0.344"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101642" e_stop="101614" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101408" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101105" e_stop="101033" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.760" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99802" e_stop="99705" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="99704" i_stop="99482" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99481" e_stop="99389" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="99388" i_stop="99089" i_length="300"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99088" e_stop="98863" e_length="226"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98494" e_stop="98406" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98278" e_stop="98202" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97962" e_stop="97888" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97359" e_stop="97228" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97004" e_stop="96917" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.888" acc_prob="0.971">
            <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96824" e_stop="96746" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="96669" e_stop="96579" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.599">
            <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="96447" e_stop="96369" e_length="79"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.732">
            <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="96271" e_stop="96156" e_length="116"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264"/>
          </intron>
          <exon e_serial="16" e_score="0.860">
            <gDNA_exon_boundary e_start="95891" e_stop="95570" e_length="322"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.304">
            <gDNA_intron_boundary i_start="95569" i_stop="94830" i_length="740"/>
          </intron>
          <exon e_serial="17" e_score="0.344">
            <gDNA_exon_boundary e_start="94829" e_stop="94798" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99389"/>
              <exon start="99088" stop="98903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="101614"/>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101489" stop="101408"/>
              <exon start="101105" stop="101033"/>
              <exon start="99802" stop="99705"/>
              <exon start="99481" stop="99390"/>
            </gDNA_exon_coordinates>
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          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTCAAGGAATGGCCAAGACTAATGG : ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG : GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG : GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG : GATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCAG : GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGCGTAATCTTTTTTTATTATTTTTTCTAAAAAAATTATTTTTTATATTTTTATTATTTTATTTTTTTTCTACTTTGGCTAATACAATATTCTTTATATATATCACCTTCAAACAGATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG : GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG : GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA : GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG : ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> K  L  Q  G  M  A  K  T  N  G :   F  M  G  H  D  M  L  A  P  F  T  A  A  W  M  I  D  M  G  P  L  V  I  D  K  A  E  :  G  S  Y  V  Y  D  V  N  G  K  K  Y  L  D  S  L  S  G  L  W  C  S  V  L   : G  G  S  E  P  R  L  I  E  A  A  N  K  Q  L  N  K  L  A  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  I  N  M  F  T  A  N  K  M  G  K  V  F  F  T  S  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  I  G  R  P  N  K  K  K  I  I  S  R  K  N  A  *  S  F  F  I  I  F  S  K  K  I  I  F  Y  I  F  I  I  L  F  F  F  Y  F  G  *  Y  N  I  L  Y  I  Y  H  L  Q  T  D  T  M  A  P  L  I  *  L  P  V  S  P   : G  F  H  H  Y  I  *  N  L  I  Y  H  L  H  I  F  F  T  L  I  A  L  I  I  G  T  I  T  C  Q  :  V  R  Q  K  R  S  T  Q  L  G  W  Q  I  I  W  K  I  L  Y  S  K  R  V  L  K  Q :   L  L  L  S  L  R  N  Q  S  W  E  E  Q  V  L  *  F  L  Q  L  L  I  S  K  R :   F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </first_frame>
            <second_frame>  S  F  K  E  W  P  R  L  M   : D  L  W  D  M  I  C  W  H  H  L  L  R  H  G  *  L  I  W  D  L  *  L  *  I  K  R  R :   V  L  M  S  M  T  *  M  E  R  S  T  L  I  L  Y  L  V  Y  G  A  Q  Y  *  :  G  G  V  S  L  V  L  L  K  L  Q  I  N  N  S  I  N  W  H  F  T  T  H  F  G  I  V  P  Q  S  L  L  W :   I  L  Q  R  S  S  *  I  C  L  L  Q  I  R  W  E  K  F  F  S  Q  V  V  D  Q  K  L  M  T  L  R :   *  S  W  C  G  I  T  T  M  P  L  G  G  Q  T  K  R  K  L  F  L  E  K  M  R  N  L  F  L  L  F  F  L  K  K  L  F  F  I  F  L  L  F  Y  F  F  S  T  L  A  N  T  I  F  F  I  Y  I  T  F  K  Q  I  P  W  L  H  L  Y  D  C  R  S  L  R  :  A  S  I  T  T  S  K  I  *  F  T  T  S  I  Y  S  S  H  *  L  P  S  L  L  E  L  S  L  A  R :   *  D  R  R  G  V  L  N  *  V  G  K  *  F  G  K  S  Y  T  Q  R  G  S  *  N   : S  C  C  F  H  C  G  T  S  H  G  R  S  R  C  Y  N  S  S  S  Y  L  F  R  K   : D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </second_frame>
            <third_frame>   A  S  R  N  G  Q  D  *  W  :  I  Y  G  T  *  Y  V  G  T  I  Y  C  G  M  D  D  *  Y  G  T  F  S  Y  R  *  S  G   : G  F  L  C  L  *  R  K  W  K  E  V  P  *  F  F  I  W  F  M  V  L  S  I  R :   G  E  *  A  S  S  Y  *  S  C  K  *  T  T  Q  *  I  G  I  L  P  L  I  L  E  S  Y  H  K  A  F  F   : G  S  C  K  G  A  H  K  Y  V  Y  C  K  *  D  G  K  S  F  F  H  K  *  W  I  R  S  *  *  H  S   : G  E  V  G  V  V  L  Q  Q  C  H  W  E  A  K  Q  K  E  N  Y  F  S  K  K  C  V  I  F  F  Y  Y  F  F  *  K  N  Y  F  L  Y  F  Y  Y  F  I  F  F  L  L  W  L  I  Q  Y  S  L  Y  I  S  P  S  N  R  Y  H  G  S  T  Y  M  T  A  G  L  S  G :   L  P  S  L  H  L  K  F  D  L  P  P  P  Y  I  L  H  T  D  C  P  H  Y  W  N  Y  H  L  P   : G  E  T  E  E  E  Y  S  T  R  L  A  N  N  L  E  N  L  I  L  K  E  G  P  E  T  :  V  A  A  F  I  A  E  P  V  M  G  G  A  G  V  I  I  P  P  A  T  Y  F  E  K  :  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98987" stop="98863"/>
                    <exon start="98494" stop="98406"/>
                    <exon start="98278" stop="98202"/>
                    <exon start="97962" stop="97888"/>
                    <exon start="97359" stop="97228"/>
                    <exon start="97004" stop="96917"/>
                    <exon start="96824" stop="96746"/>
                    <exon start="96669" stop="96579"/>
                    <exon start="96447" stop="96369"/>
                    <exon start="96271" stop="96156"/>
                    <exon start="95891" stop="95817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNYFLYFYYFIFFLLWLIQYSLYISPSNRYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101642" stop="101614"/>
                    <exon start="101489" stop="101408"/>
                    <exon start="101105" stop="101033"/>
                    <exon start="99802" stop="99705"/>
                    <exon start="99481" stop="99389"/>
                    <exon start="99088" stop="99011"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQGMAKTNGFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKKYLDSLSGLWCSVLGGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDTQVKLVWYYNNAIGRPNKKKIISRKNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="101642" e_stop="101614"/>
            <exon e_start="101489" e_stop="101408"/>
            <exon e_start="101105" e_stop="101033"/>
            <exon e_start="99802" e_stop="99705"/>
            <exon e_start="99088" e_stop="99015"/>
            <exon e_start="98901" e_stop="98863"/>
            <exon e_start="98494" e_stop="98406"/>
            <exon e_start="98278" e_stop="98202"/>
            <exon e_start="97962" e_stop="97888"/>
            <exon e_start="97359" e_stop="97228"/>
            <exon e_start="97004" e_stop="96917"/>
            <exon e_start="96824" e_stop="96746"/>
            <exon e_start="96669" e_stop="96579"/>
            <exon e_start="96447" e_stop="96369"/>
            <exon e_start="96271" e_stop="96156"/>
            <exon e_start="95891" e_stop="95570"/>
            <exon e_start="94829" e_stop="94798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.599" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.304" e_score="0.860"/>
          <exon-only e_score="0.344"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101642" e_stop="101614" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101613" i_stop="101490" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101408" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="101407" i_stop="101106" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101105" e_stop="101033" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.760" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101032" i_stop="99803" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99802" e_stop="99705" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="99704" i_stop="99089" i_length="616"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99088" e_stop="99015" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="99014" i_stop="98902" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98901" e_stop="98863" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="98862" i_stop="98495" i_length="368"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98494" e_stop="98406" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98405" i_stop="98279" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98278" e_stop="98202" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98201" i_stop="97963" i_length="239"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97962" e_stop="97888" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97887" i_stop="97360" i_length="528"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97359" e_stop="97228" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97004" e_stop="96917" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.888" acc_prob="0.971">
            <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96824" e_stop="96746" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76"/>
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          <exon e_serial="13" e_score="1.000">
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              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96415" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96400" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96258" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96256" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96243" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTCAAGGAATGGCCAAGACTAATGG : ATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAG : GGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAG : GGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCACAAAGCCTTCTTTG : GTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATGC : ATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGG : GCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAG : GTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACA : GTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAG : ATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> K  L  Q  G  M  A  K  T  N  G :   F  M  G  H  D  M  L  A  P  F  T  A  A  W  M  I  D  M  G  P  L  V  I  D  K  A  E  :  G  S  Y  V  Y  D  V  N  G  K  K  Y  L  D  S  L  S  G  L  W  C  S  V  L   : G  G  S  E  P  R  L  I  E  A  A  N  K  Q  L  N  K  L  A  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  V  K  L  V  W  Y  Y  N  N  A  I  G  R  P  N  K  K  K  I  I  S  R  K  N  A :   Y  H  G  S  T  Y  M  T  A  G  L  S  G :   L  P  S  L  H  L  K  F  D  L  P  P  P  Y  I  L  H  T  D  C  P  H  Y  W  N  Y  H  L  P   : G  E  T  E  E  E  Y  S  T  R  L  A  N  N  L  E  N  L  I  L  K  E  G  P  E  T  :  V  A  A  F  I  A  E  P  V  M  G  G  A  G  V  I  I  P  P  A  T  Y  F  E  K  :  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </first_frame>
            <second_frame>  S  F  K  E  W  P  R  L  M   : D  L  W  D  M  I  C  W  H  H  L  L  R  H  G  *  L  I  W  D  L  *  L  *  I  K  R  R :   V  L  M  S  M  T  *  M  E  R  S  T  L  I  L  Y  L  V  Y  G  A  Q  Y  *  :  G  G  V  S  L  V  L  L  K  L  Q  I  N  N  S  I  N  W  H  F  T  T  H  F  G  I  V  P  Q  S  L  L  W :   *  S  W  C  G  I  T  T  M  P  L  G  G  Q  T  K  R  K  L  F  L  E  K  M   : H  T  M  A  P  L  I  *  L  P  V  S  P   : G  F  H  H  Y  I  *  N  L  I  Y  H  L  H  I  F  F  T  L  I  A  L  I  I  G  T  I  T  C  Q  :  V  R  Q  K  R  S  T  Q  L  G  W  Q  I  I  W  K  I  L  Y  S  K  R  V  L  K  Q :   L  L  L  S  L  R  N  Q  S  W  E  E  Q  V  L  *  F  L  Q  L  L  I  S  K  R :   F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </second_frame>
            <third_frame>   A  S  R  N  G  Q  D  *  W  :  I  Y  G  T  *  Y  V  G  T  I  Y  C  G  M  D  D  *  Y  G  T  F  S  Y  R  *  S  G   : G  F  L  C  L  *  R  K  W  K  E  V  P  *  F  F  I  W  F  M  V  L  S  I  R :   G  E  *  A  S  S  Y  *  S  C  K  *  T  T  Q  *  I  G  I  L  P  L  I  L  E  S  Y  H  K  A  F  F   : G  E  V  G  V  V  L  Q  Q  C  H  W  E  A  K  Q  K  E  N  Y  F  S  K  K  C  :  I  P  W  L  H  L  Y  D  C  R  S  L  R  :  A  S  I  T  T  S  K  I  *  F  T  T  S  I  Y  S  S  H  *  L  P  S  L  L  E  L  S  L  A  R :   *  D  R  R  G  V  L  N  *  V  G  K  *  F  G  K  S  Y  T  Q  R  G  S  *  N   : S  C  C  F  H  C  G  T  S  H  G  R  S  R  C  Y  N  S  S  S  Y  L  F  R  K   : D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101642" stop="101614"/>
                    <exon start="101489" stop="101408"/>
                    <exon start="101105" stop="101033"/>
                    <exon start="99802" stop="99705"/>
                    <exon start="99088" stop="99015"/>
                    <exon start="98901" stop="98863"/>
                    <exon start="98494" stop="98406"/>
                    <exon start="98278" stop="98202"/>
                    <exon start="97962" stop="97888"/>
                    <exon start="97359" stop="97228"/>
                    <exon start="97004" stop="96917"/>
                    <exon start="96824" stop="96746"/>
                    <exon start="96669" stop="96579"/>
                    <exon start="96447" stop="96369"/>
                    <exon start="96271" stop="96156"/>
                    <exon start="95891" stop="95817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQGMAKTNGFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKKYLDSLSGLWCSVLGGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLVKLVWYYNNAIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="97362" e_stop="97228"/>
            <exon e_start="97004" e_stop="96917"/>
            <exon e_start="96824" e_stop="96746"/>
            <exon e_start="96669" e_stop="96579"/>
            <exon e_start="96447" e_stop="96369"/>
            <exon e_start="96271" e_stop="96156"/>
            <exon e_start="95891" e_stop="95570"/>
            <exon e_start="94829" e_stop="94798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.599" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.304" e_score="0.860"/>
          <exon-only e_score="0.344"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97362" e_stop="97228" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="97227" i_stop="97005" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97004" e_stop="96917" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.971">
            <gDNA_intron_boundary i_start="96916" i_stop="96825" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96824" e_stop="96746" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96745" i_stop="96670" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96669" e_stop="96579" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.599">
            <gDNA_intron_boundary i_start="96578" i_stop="96448" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96447" e_stop="96369" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.732">
            <gDNA_intron_boundary i_start="96368" i_stop="96272" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96271" e_stop="96156" e_length="116"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="95892" i_length="264"/>
          </intron>
          <exon e_serial="7" e_score="0.860">
            <gDNA_exon_boundary e_start="95891" e_stop="95570" e_length="322"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.304">
            <gDNA_intron_boundary i_start="95569" i_stop="94830" i_length="740"/>
          </intron>
          <exon e_serial="8" e_score="0.344">
            <gDNA_exon_boundary e_start="94829" e_stop="94798" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97362" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97359" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97353" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97341" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97310" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97302" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97260" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97253" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97240" stop="97228"/>
              <exon start="97004" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96982" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96963" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281585" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96954" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96952" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96932" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96924" stop="96917"/>
              <exon start="96824" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96803" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96758" stop="96746"/>
              <exon start="96669" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96621" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95570"/>
              <exon start="94829" stop="94798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326922" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96608" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267342" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96587" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96582" stop="96579"/>
              <exon start="96447" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96415" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96400" stop="96369"/>
              <exon start="96271" stop="96156"/>
              <exon start="95891" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96258" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96256" stop="96156"/>
              <exon start="95891" stop="95634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96243" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96156"/>
              <exon start="95891" stop="95622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAG : GCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTG : GTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAA : GGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAG : ATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGG : GTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAG : ATGATAAGCATATATGGGAAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCTTTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGATTG : GTATGAAGCAAGTTGGTCACCACAACTAAAAG</gDNA_template>
            <first_frame> *  I  Q  A  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  G  F  G  R  L  G  T  M  F  G  C  D  K  Y  N  I  K  P  D  L  V  S  I  A  K  :  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L   : G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K :   E  K  N  I  T  E  V  V  N  K  L  S  P  K  F  Q  E  G  L  K  A  F  I  D  S  P  I  I  G  E  :  I  R  G  T  G  L  V  L  S  T  E  F  V  D  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  T  Y  F  G  S  Q  C  Q  K  H  G  M  L  V  S  F  S  G  D  H  V  N  M  A  P  P  F  T  L  S  L  E  E  L  D  E  :  M  I  S  I  Y  G  K  A  L  K  D  T  E  K  R  V  E  E  L  K  S  Q  K  K  *  K  S  H  E  K  K  V  I  S  S  L  N  K  N  F  V  V  V  F  F  F  F  L  S  V  A  T  H  N  I  R  V  F  Y  Y  I  L  L  F  *  *  E  Q  H  L  N  K  L  C  H  F  L  F  Q  Y  D  *  N  F  K  F  L  L  S  D  I  E  M  V  K  N  D  I  Q  H  *  *  N  I  T  L  I   : G  M  K  Q  V  G  H  H  N  *  K </first_frame>
            <second_frame>  R  F  K  L  F  *  R  N  M  T  F  F  S  S  R  T  R  *  Y  V  D  L  E  D  L  G  Q  C  L  A  V  I  S  T  T  L  S  L  I  L  S  L  *  Q  R :   L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  :  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I   : R  K  K  I  L  L  R  *  *  I  N  Y  H  Q  S  F  K  K  V  *  K  H  L  *  T  V  Q  *  L  E  R :   *  G  E  L  V  *  Y  F  L  Q  S  L  *  I  T  N  L  L  M  I  L  F  H  Q  N  G  :  V  L  V  H  I  L  D  H  N  V  K  S  M  V  C  W  *  V  F  L  V  I  M  *  I  W  P  L  H  S  P  *  V  L  K  N  L  M  R :   *  *  A  Y  M  G  K  H  *  R  I  L  K  K  E  W  K  N  *  S  L  R  R  S  K  N  L  M  K  K  K  L  F  Q  V  *  I  K  T  L  L  *  F  F  F  F  F  *  V  L  L  L  I  T  *  E  C  F  I  I  F  Y  C  F  N  E  S  N  I  *  I  N  C  V  I  F  Y  F  N  M  I  E  I  L  N  F  F  *  V  T  S  R  W  L  K  M  I  Y  N  I  N  R  I  *  H  *  L  :  V  *  S  K  L  V  T  T  T  K   </second_frame>
            <third_frame>   D  S  S  C  F  K  E  I  *  H  S  F  H  R  G  R  G  D  M  W  I  W  K  T  W  D  N  V  W  L  *  *  V  Q  H  *  A  *  S  C  L  Y  S  K   : G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W :   C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  :  G  K  K  Y  Y  *  G  S  E  *  I  I  T  K  V  S  R  R  F  E  S  I  Y  R  Q  S  N  N  W  R   : D  K  G  N  W  F  S  T  F  Y  R  V  C  R  *  Q  I  S  *  *  S  F  S  T  R  M  G :   C  W  Y  I  F  W  I  T  M  S  K  A  W  Y  V  G  E  F  F  W  *  S  C  K  Y  G  P  S  I  H  L  E  S  *  R  T  *  *   : D  D  K  H  I  W  E  S  I  E  G  Y  *  K  K  S  G  R  I  E  V  S  E  E  V  K  I  S  *  K  K  S  Y  F  K  F  K  *  K  L  C  C  S  F  F  F  F  F  E  C  C  Y  S  *  H  K  S  V  L  L  Y  S  I  V  L  M  R  A  T  F  E  *  I  V  S  F  F  I  S  I  *  L  K  F  *  I  S  F  K  *  H  R  D  G  *  K  *  Y  T  T  L  I  E  Y  N  I  D  W :   Y  E  A  S  W  S  P  Q  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0131G17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97359" stop="97228"/>
                    <exon start="97004" stop="96917"/>
                    <exon start="96824" stop="96746"/>
                    <exon start="96669" stop="96579"/>
                    <exon start="96447" stop="96369"/>
                    <exon start="96271" stop="96156"/>
                    <exon start="95891" stop="95817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKAFIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="97205" e_stop="96663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="97205" e_stop="96663" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97205" stop="96663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTGACGATCGCTTATTCTTTATATTTACTTATATTCTAAATTCTTCTATTTATCTTTCTATCAATCGAATTAATAAATTTAAACTCTAATTAGAATTAAAATAAGTGTGCTATATAGATATATATATATAATATTTACATAATCAGATCACTTCAAATTCGTAATTCTTAATTTGACTATTTTTAACATTGTTTTAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGAGCATATAATATAAATGTGATTGAATATTTACTTAATATATATAGTATTCATCTATTTATATTTTAATAATATTTTTTTCTACAATTAGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGTACGTATCTAATTAGTTAAATATTTTTTTTATATCGTCAATATACTAAAAATATTTATATTTAATTTTTTTTCAGGGAAAAA</gDNA_template>
            <first_frame> D  L  T  I  A  Y  S  L  Y  L  L  I  F  *  I  L  L  F  I  F  L  S  I  E  L  I  N  L  N  S  N  *  N  *  N  K  C  A  I  *  I  Y  I  Y  N  I  Y  I  I  R  S  L  Q  I  R  N  S  *  F  D  Y  F  *  H  C  F  K  A  L  S  G  G  Y  I  P  I  G  A  V  L  V  S  E  E  I  S  K  V  I  M  S  Q  S  N  Q  L  G  E  H  I  I  *  M  *  L  N  I  Y  L  I  Y  I  V  F  I  Y  L  Y  F  N  N  I  F  F  Y  N  *  V  F  F  A  M  D  L  L  I  L  D  I  L  L  R  V  R  L  H  W  K  H  *  K  S  I  S  T  Y  L  I  S  *  I  F  F  L  Y  R  Q  Y  T  K  N  I  Y  I  *  F  F  F  R  E  K </first_frame>
            <second_frame>  I  *  R  S  L  I  L  Y  I  Y  L  Y  S  K  F  F  Y  L  S  F  Y  Q  S  N  *  *  I  *  T  L  I  R  I  K  I  S  V  L  Y  R  Y  I  Y  I  I  F  T  *  S  D  H  F  K  F  V  I  L  N  L  T  I  F  N  I  V  L  R  L  F  L  V  D  I  Y  Q  L  V  L  C  L  *  V  K  K  F  L  R  S  *  C  L  K  A  I  N  L  V  S  I  *  Y  K  C  D  *  I  F  T  *  Y  I  *  Y  S  S  I  Y  I  L  I  I  F  F  S  T  I  R  C  F  L  P  W  I  Y  L  F  W  T  S  C  C  V  C  G  C  I  G  S  T  K  N  L  *  V  R  I  *  L  V  K  Y  F  F  Y  I  V  N  I  L  K  I  F  I  F  N  F  F  S  G  K   </second_frame>
            <third_frame>   F  D  D  R  L  F  F  I  F  T  Y  I  L  N  S  S  I  Y  L  S  I  N  R  I  N  K  F  K  L  *  L  E  L  K  *  V  C  Y  I  D  I  Y  I  *  Y  L  H  N  Q  I  T  S  N  S  *  F  L  I  *  L  F  L  T  L  F  *  G  S  F  W  W  I  Y  T  N  W  C  C  A  C  K  *  R  N  F  *  G  H  N  V  S  K  Q  S  T  W  *  A  Y  N  I  N  V  I  E  Y  L  L  N  I  Y  S  I  H  L  F  I  F  *  *  Y  F  F  L  Q  L  G  V  F  C  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  L  K  I  Y  K  Y  V  S  N  *  L  N  I  F  F  I  S  S  I  Y  *  K  Y  L  Y  L  I  F  F  Q  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0131G17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="96923" PGL_stop="97205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96923" e_stop="97205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="96923" e_stop="97205" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96923" stop="97205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGCTTTGAGACATTATGACCTTAGAAATTTCTTCACTTACAAGCACAGCACCAATTGGTATATATCCACCAGAAAGAGCCTTAAAACAATGTTAAAAATAGTCAAATTAAGAATTACGAATTTGAAGTGATCTGATTATGTAAATATTATATATATATATCTATATAGCACACTTATTTTAATTCTAATTAGAGTTTAAATTTATTAATTCGATTGATAGAAAGATAAATAGAAGAATTTAGAATATAAGTAAATATAAAGAATAAGCGATCGTCAAATC</gDNA_template>
            <first_frame> D  C  F  E  T  L  *  P  *  K  F  L  H  L  Q  A  Q  H  Q  L  V  Y  I  H  Q  K  E  P  *  N  N  V  K  N  S  Q  I  K  N  Y  E  F  E  V  I  *  L  C  K  Y  Y  I  Y  I  S  I  *  H  T  Y  F  N  S  N  *  S  L  N  L  L  I  R  L  I  E  R  *  I  E  E  F  R  I  *  V  N  I  K  N  K  R  S  S  N  </first_frame>
            <second_frame>  I  A  L  R  H  Y  D  L  R  N  F  F  T  Y  K  H  S  T  N  W  Y  I  S  T  R  K  S  L  K  T  M  L  K  I  V  K  L  R  I  T  N  L  K  *  S  D  Y  V  N  I  I  Y  I  Y  L  Y  S  T  L  I  L  I  L  I  R  V  *  I  Y  *  F  D  *  *  K  D  K  *  K  N  L  E  Y  K  *  I  *  R  I  S  D  R  Q  I </second_frame>
            <third_frame>   L  L  *  D  I  M  T  L  E  I  S  S  L  T  S  T  A  P  I  G  I  Y  P  P  E  R  A  L  K  Q  C  *  K  *  S  N  *  E  L  R  I  *  S  D  L  I  M  *  I  L  Y  I  Y  I  Y  I  A  H  L  F  *  F  *  L  E  F  K  F  I  N  S  I  D  R  K  I  N  R  R  I  *  N  I  S  K  Y  K  E  *  A  I  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0131G17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 296 chains have been computed
$ 
$ memory statistics:
$ 845680 bytes spliced alignments in total
$ 216 spliced alignments have been stored
$ 3915 bytes was the average size of a spliced alignment
$ 32144 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2296 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 333 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:51:32
-->
