<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 11:26:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327648" ref_strand="+" ref_description="SGN-U327648        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="810" stop="1831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1110" g_stop="1531" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1665" g_stop="1671" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U327648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1110" e_stop="1531"/>
          <exon e_start="1665" e_stop="1671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTCTTTCGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTAAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322714" ref_strand="+" ref_description="SGN-U322714        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L1 family protein | chr2:17789385-17792140 FORWARD | Aliases: F14N22.3(evalue: 2e-61, score=233) genbank/nr: gi|30689119|ref|NP_850375.1| ribosomal protein L1p family [Arabidopsis thaliana] gi|20268740|gb|AAM14073.1| unknown protein [Arabidopsis thaliana] gi|21280899|gb|AAM45043.1| unknown protein [Arabidopsis thaliana] gi|26451659|dbj|BAC42926.1| unknown protein [Arabidopsis thaliana](evalue: 1e-59, score=233)">
      <seq>aaaaaagctgtttatgatcttaaagaggccattcggcttgtaaaggctaatgccaagaagaaatttgatgaaactctggaagctcatgttgttttgactcctgatatgcgtcgaagtgatctgaaacttgaaggtacagtggctgttcctcatgggtttggaaaggtatatcggattgctgtttttgctgaaggagctgctgctgatgaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagagaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17462" stop="7310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17162" g_stop="17118" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17117" i_stop="15012" i_length="2106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15011" g_stop="14934" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14933" i_stop="14257" i_length="677">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14256" g_stop="14215" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="165" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14214" i_stop="14129" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14128" g_stop="14023" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="375" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="480" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="568" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="615" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7942" g_stop="7610" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="948" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="962"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U322714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17162" e_stop="17118"/>
          <exon e_start="15011" e_stop="14934"/>
          <exon e_start="14256" e_stop="14215"/>
          <exon e_start="14128" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAGGTCAGATTTTTTTGTTTCAATCAACTGTGTATTGTTTTGTTGGAGTTTCTGTTCTGTTATTAGCTGCTGCTTTTTGTACTTCTGGTAATTATATCGCTAGACTGCTTTGGACTGTTTTTCTTGAGCTGAGTGTCTGTATGAAACAACCTCTCTGAGGTAAGAGTTACTTATGTGAGGTAGGAGTAGTAAGGTTATATGAATTCTTTTTAGCATTTGTTGTTTCTTATACAAAATTTTGACTCCTTGTAAAGTTAAAAGGCAGTAGTAATTGGATAATATATTGAAAAAAAGAAGAAAAAAACAATAACAGGATGCCTATTATTAGTTTAAATGAAAAAGAAGAGGAGAAAACAATTAAAGGATTCCCATTAAAGGGGCCATTTGGCTTGTAAAGGTTACATTTTTTGTTTCAATCAACTGTGTGTAGAGATCCCAAATTAGTTGAGGTTGTTTATATGAATTCTTTTTTAGCATTTGCTGTTTCTTGTACGAAATTTTGACTCGTTATAAAGTTGTAAATAATAGTAATAATATAAGAAAACAATCACAGGATGTGTTTCTGCTGGATTTCTAAATGTAGTAAAGAATATCTGGAATATTATTATTTCATCGTCATACTTGCATGTCTGATAATTTTGTTTCAAGTGGACAGTGAAATTTCAAGGTAGCCCTAAAATAGGGAGTTGAGGAAAGAATAAAAGTAAGAACTGAAGAAAAACACTTCTAGCAGTTTACTTAGGTTTCATATGGATAACCTTCTCGTAAGTTACATTGTATCCTTCAAGGTCAAAAAAAGATCATACTTGAATAACCTTGTTGTGATACTCACTATTTGCTTACATTACTAATTTGGAGTCGATATGGTATCCTAGTGAACATCGATGATTGGGTGCCCGCCATAGTTTATCATGTTTTGATGTAAAAATCTGTCTTTTGGTCTAGAGTCTGTAAATGTGGTTTTCTTCAGCATATTGATGAAAAATTAACTTCATAGAATGCATTATTGCATTGTTAATTATTTGGAGCACCTTGTTGGTATGTCCTACATCCTCAATTGGATATCAATGATTTACTATAGGAATGGTCCAATATATTCTCTAGGTTGAAGACTATTTTTTAATAATGAGAATACTTGTATAACCTCCTTCCATAAGGAGCTGCTGTCACATGCTAAAGTAAAGTGCATCTAAGGATATTTTGGATAGCTTCCATATATCTCTAGATAAGTTAATGGTCAAGGTATTTCTAGACACTCTTTTTTGATAATAATGATGGCGGAGCCTGTTTGCCTGCGCCTCAACTGTTCCACCATGTAGCTGCATCCTTTCACTAATACAAGTACCATATAACTCCATTATTCATTAAGGTATTTCATCAACATTTCAGCAGATAGAAAGGAATCATCTTGTTTTTTGACAATGCTACATTCAGACAGTTGTCTTCCATTAATTACTAGGCCACCCTCTAGCGTCGTATTTCTAGATAATTTTTTGTTTTTTTTTGGCTTTGCTTTCTTTAGGATAGTTATGGTGTCAGAACCTGCTAATCCGTCGTTACCTATTACTTTTCATTAGTATTGGGTAACTCTATCCACCAACACTTAGGCTAGTGTAAAAATCCACGTGATGTTGTCTCTTGGTTCCCAAGGTTGTCACTTCATCTCTTCAACTGTTAGGCTTTTTCCTTGAGAAGTCGCAAGTGTTTATAGATAATATCATAGTGAAAGAGACAAGTTCAACTTTTCCATCAATTAGGGGTAGTCATATGCATGGCTCAAAAATTCAACTCTTATTTTTCCTCAGAATCTCATTATATTTTTTTATTCATCTATTCAAGTTGAAAATAGTGATTATGGATCAAAGTCCATATTATGTAATCTGAGTGACGCTTAAGCATAGCTTGCCTGAGATAGTTTGCTTGTCTGCTTTTTGCATGGTGCTTTGTCATTCTATCTATAGTATATAATTAAGTGACTCTTAGCTGTAGCTCGCCATTAATTGGTTTTCTTGTGTGCTTCTCATGGGGCTTTGTCTTTCTTTCTACTCGTGTTTTCTTCAGAGGTTACAGACTGAGCCATGATTCATTGTATTTTTAGTGATTATGCAGGCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTGGTGCGTGCTTTCGTCCTCTTTCTGGCCCACATTAAGTTTACTATCTGAGCTTGTCGTCACTCGTCACGTGATACTTGAACAGAAAGACTTCTTGTTACCACTTCTGTTGTTATTGGTTTATATGTCTAAGTTTATTCATCAGATGGTGAATGGATATCAAATAATTGTGCTTAGAAATAGCTCATAAATCACGAGAGCATCGAGGGGCTTAAACCTTTCAAACCTAAATCTCAATTCTTGAACATTTGGAAGCACTCAGAATTTGCTCTGCATGTAGTCTTGTAGATTTTGCAATTGACAGAAAATTCATTTATATTTAAAACAAATCTCCAACATTCTAGATATACTTATCATGGTTTGGTTAGGGGTTTGCTGATTCCACATCCTTTTGTTGTTCGTGAGTGTATGGAGCAGATTTTATGGTAGAATCATGCTCCTAATGCCACCTAATTAAGAGTGAATTTTCCTTTCCTTTGCTGGAATATTGTTCGTGCAAGCCTCTAGAAATATAAATTCTCTTGTACAGGTGGTATAAGCAGAGTGAGATTACAAACATGTTTCATTACCAATTCTTCCGTTTTGATTGACCTCTTCTAGTGTAGCTAATTTGACCCTAGTATAAAGCAATCTCATTCGTTTGCTAGTGCTAGCTCATAGTTCTTTCTTTTGTACTGCAGAAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAGGTATTAGTGCATTCTTCATAAAGTTTAAGGTTAGATAATCATATGCTGTTGTAGATATACTGTTTGACTAAATATTTTCCTTTCAGGTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</genome_strand>
        <mrna_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG......................................................................................GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329870" ref_strand="+" ref_description="SGN-U329870        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaatattggctgggaaaggattanaaaagaaagggattggagggttgaattagttaagcattgtaaccagtgggctattgaagtcctttaatttcattttaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11060" stop="9683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10760" g_stop="9983" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U329870" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10760" e_stop="9983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGA-TGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAATATTGGCTGGGAAAGGATTANAAAAGAAAGGGATTGGAGGGTTGAATTAGTTAAGCATTGTAACCAGTGGGCTATTGAAGTCCTTTAATTTC-ATTTTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321786" ref_strand="+" ref_description="SGN-U321786        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L1 family protein | chr2:17789385-17792140 FORWARD | Aliases: F14N22.3(evalue: 8e-09, score=57) genbank/nr: hypothetical(evalue: 5e-07, score=57)">
      <seq>ctcttctctcttccctaaaccctcattacatcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgctgaagaggaaatgatttcgtttccaacattgattaatgtgaagagtgatgaaaagaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18048" stop="16858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17748" g_stop="17158" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U321786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17748" e_stop="17158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344946" ref_strand="+" ref_description="SGN-U344946        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcagtagatttttccggaaaggatcgccaggagcctgtgaatctttctaggtggaaggtgagacttgaagtcctattaaggagaaatccaactccagcagtgaagagattcctggcaacactagctttttacagactcccagaaattttagcaggggttctccttatatcatgaaaaaattggagtatacattacttaaaagcttggttggaaatttatagagatttatgcatttcagcaaattgtatgcttgcaaaataaacccctaattatatctctaatcagatccctggctaatgcaaatcatgtaatatcttaacaggaaaagtttatttgttagatagtctggagctaaatcaagccaattaaattcatattgggcacacaatgagttggttatatacttttaatagcaaaggagaacaatataagggaaaataacatgagacagttgctgctgtcaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26986" stop="25839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26686" g_stop="26293" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26292" i_stop="26213" i_length="80">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26212" g_stop="26139" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U344946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26686" e_stop="26293"/>
          <exon e_start="26212" e_stop="26139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTTGTAAGCTTTTAAAATTTTCCCATCTATGCATGCCTTTCACGATTAACTAAATAACATTGCAACATGCTGCTAAAATTCAGGGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</genome_strand>
        <mrna_strand>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTT................................................................................GGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340404" ref_strand="+" ref_description="SGN-U340404        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g29240.1); similar to B1131G08.12 [Oryza sativa (japonica cultivar-group)] (GB:NP_916200.1); contains InterPro domain Protein of unknown function DUF688 (InterPro:IPR007789) | chr2:13194660-13197496 REVERSE | Aliases: None(evalue: 1e-36, score=150) genbank/nr: unknown(evalue: 9e-35, score=150)">
      <seq>aaaaaactgtttcaagtcaagatcatctattttctaaagaaataaggcggtgtcaaatcatatcatggagggcaagcaattgaagtttaatcaacctcttctgtcagtaagacgaatctctccagcaatgatttcccagagagatgagaaaaagaaattcgacaattcctttcccactatgacacatcctcctcattacaaatcagaactgaactcaggattagtcgtaaagccaggagctgttcctttcctctgggaacagacccccggaaggccaaaggatgagagtagaccacaaactcatttcacggagaaacctcttaccgcaccaaagcttccacctgggcggaagttaagagataaccaggattacaatcaaacaggaaaatatcaaactgccatgctgagttgcacttcttcagatgaaaatgtaaagaagattgagagttttgacagctcaaaagaagttatgcacgataaggaaaagatcaaatcggagaatgatgatgaaacctatttggatgccttggatgcactttcaagaactgaatcatcctttctaaattgtagtgtaagtggcttaagtgaatttgatgagccgaatgcaaaacaatctcgaacttcttcagcgaatccgcagactaaagattttatgatgggtcgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52827" stop="55752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53127" g_stop="53165" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53166" i_stop="54822" i_length="1657">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54823" g_stop="55452" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="669" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U340404" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53127" e_stop="53165"/>
          <exon e_start="54823" e_stop="55452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAGGTACACTGTGTTTTTTAATCAGTTTTAATTTTTATTTATGTTCTTGTATGTTTTTTTTTGAATTTTCTGTTGGATTTATATGTTTATTACTGCTCCATTGGATATTTGATTTTTTTTCCCTAGGCTTATTTAGCTGAATTTCAAGAATTCTTCAAGATTCAATTTTTTCCAACAAAGTTTTTGTAATTTTTTTTTTGGCAAAAAAAGGTTAGTACCATCCTCTTTTTGAAAGATTTTACAAAAAAAAATAAAAAAAATGATAAGGTAATTTTTTAGTTGAATTTCAAGAATTCTTTCTTCCAGTTTCAATCTTCTGAATAATCAAGCTATTAAAGGAAAAGTTACAACAAAGTTTTTTAAAAACATTTGTTGGGTTTTTCTATAAATTGTTGCTTTGAACTTTGGTTTTTTTTTTTTTTTTAGAAAAAAAAAATACTACCTCTTTTTGAAATATCTTAAAAACCTGAGTGTGAAATCTTGAAAAAGATAGTAACTTTTTTTTTCTCCATAAAAAAACAGTCGAAACAAACACTTCAAAATTATTTTTTGTTAAAAGTTTAGATTCTAAATTGATATCCAAATCAAGTATCTTGATATTGCAAATGAAAATTATGTAGTCTGTTTCTGGTTAAAGATTTGTAATGTCAAAGTAGTTGTATGATAATGTTAAAGAAATGCCAAAAGTATCTTGTTTTGAAATGAATTGGACATGAATGGGATCATATACTTGATTCTAAGTAACTCGGAACTTGGACCAAAAGTCATGTAGATTTTGGCTAGGCCTTTGTATTCTCAGTACTTATGAACTCTATATGTAATCTAGTAAGTTGCCTTTTCAAGAATCTAGAACCCATGAACTCAAAATCCTAGCTCCGCTTCAGGGAGTACCTTGGTTGGAAGTCCGAGTCAAAATTATCATGTAGGGGGTTTGGCGAGGTGGAGTTTACCATAAAAGATTTATCTACTTGGTTCACGCCATCAAGTCGATCTTGAGGTGGAGTTTACCATAAAAGATTTATCTACTTGGTTCACGCCATCAAGTCGATCTTGATAGTACGAATATGAGAAGTGTCATAATCGCATTGATGAATGAATGATGTCCTCAAGATTTTATAGTTAGGCTTGTAAAATATATGTTTCTCTTCACCTGCTTTCCTCTTCAATCTTATTGTCATTGGCCAGTGGAGTTGTTCTGAAGATCGACGTATGTTGCTTGGACTCTTTTGCCAGACCTTGTATCAGATCCTCCAAAAATGAACTACTTCCGGTGTATTTGAAGAGTGTCGTCAGCAACATAATTGAAGACACTCGTATCAATCTAAAGTGTGTTTCCCTTTGAACTATTTAGCCAAGGTTTCCCCACAGAGTTCTCCAATAAAGTGTTTCTGACTTTTGTTGATAGTAATTGCAAATAAGCAAGTAGGGGCCGAGAGGTGGCGAGATTTTGGAAGTGGTTTCGTTATTTTTTGATTCGTATCTATTTACATAGAGTTTATCTAAGCTTTGAGTGTACGCAACATCATTTCTATGAGGACATATATAGTTAAAAATGAAGGCACTGGTGTAACATCATCGGTCAGCTGGCCCCTGTTACATTATCGTTTTGTTGTTGTAATACATTGAAGAGATTTTCACAATTTGATTGTTGAATGTGCAGAAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAGGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAGGATTTTATGATGGGTCGATTTCT</genome_strand>
        <mrna_strand>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAAGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAAGATTTTATGATGGGTCGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344359" ref_strand="+" ref_description="SGN-U344359        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g29240.1); similar to B1131G08.12 [Oryza sativa (japonica cultivar-group)] (GB:NP_916200.1); contains InterPro domain Protein of unknown function DUF688 (InterPro:IPR007789) | chr2:13194660-13197496 REVERSE | Aliases: None(evalue: 3e-18, score=89.4) genbank/nr: unknown(evalue: 2e-16, score=89.4)">
      <seq>caggacctattcaacttatgccaatgacccttacaataatatgacaatgcttagcacgaacgcgaaagaaaataatcctgagctcaagtgcttgtctgatcagaacaatatcagggaagtagatgttttaactccttttgtagagaaaactctgtacatagatattgtgcataaaacggattcatcagttaagatatcatgttctctagataaaaaaccatccaagttacaacacaaggacgttgagatacttgaacagatgataaaacaaaaaccatttttagattcttcactttattcgtctgagacttcattaaagccatatgttcaaaggaaagctgactgcaatccaccacgttcagcggaaagactgaacaatgaaagagagacgaaagcatggacatctacgggtcaagctcgagattgttaccaagatacaacgaccttagcaaagtctgacagtgatggtgtagaaaaaaatagaaagccaattccgagaagagaaaagttagaggactcatgcaaagtgcacccagagtttcttgctccaccacctttaccgaaatctccatcagattcatggctttgccgcactttgccttctttatccacaaagaatgcatcttcacgggcttatatcgggacaggactgaatcctaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55766" stop="57027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56066" g_stop="56727" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U344359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56066" e_stop="56727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</genome_strand>
        <mrna_strand>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345051" ref_strand="+" ref_description="SGN-U345051        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:17785429-17789167 FORWARD | Aliases: F14N22.4(evalue: 2e-37, score=153) genbank/nr: gi|15227985|ref|NP_181798.1| expressed protein [Arabidopsis thaliana] gi|25370821|pir||B84857 hypothetical protein At2g42700 [imported] - Arabidopsis thaliana gi|4512682|gb|AAD21736.1| unknown protein [Arabidopsis thaliana] gi|20198081|gb|AAM15390.1| unknown protein [Arabidopsis thaliana](evalue: 1e-35, score=153)">
      <seq>ttctaacaaacatgtcaagtctttatgatgttggtcgacgtaagagatctgcacggctattactcattgaccgcactcttgaccttcttactccatgctgtcatggggattcacttgtggatcacatgttttcatcattgcctcacagaaaacggatggcatccttaagacaagctaaaagctcccgaagccaggttaaactatgccctgcttacttacagcgttcacccctcaccgtacagataccactcaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgcggttggaattcaagagactcaacttctcacatggaccaattggtgaattttagcactaaacctagtggtgaaatgtccacactagattttcagagtgaccttctttgtgggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64947" stop="65988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65247" g_stop="65688" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U345051" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65247" e_stop="65688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTT</genome_strand>
        <mrna_strand>TTCTAACAAACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCACGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCACATGTTTTCATCATTGCCTCACAGAAAACGGATGGCATCCTTAAGACAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTATGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGCGGTTGGAATTCAAGAGACTCAACTTCTCACATGGACCAATTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACTAGATTTTCAGAGTGACCTTCTTTGTGGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344012" ref_strand="+" ref_description="SGN-U344012        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | yippee family protein, similar to mdgl-1 (Mus musculus) GI:10441648, Yippee protein (Drosophila melanogaster) GI:5713279; contains Pfam profile PF03226: Yippee putative zinc-binding protein | chr5:21914227-21915836 REVERSE | Aliases: K19P17.11, K19P17_11(evalue: 2e-54, score=210) genbank/nr: gi|15238881|ref|NP_200205.1| zinc-binding protein-related [Arabidopsis thaliana] gi|27923898|sp|Q9FN32|YPL6_ARATH Yippee-like protein At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana](evalue: 1e-52, score=210)">
      <seq>ggcggccaaatcggccgattgactctcacaactgacccaaaaatcaattcttgttttgtgggttttgttgattttccattgaaaaatgggaaggatatttgttgtagatcttgaaggcaggatttacaagtgcaaattctgccaaacccaccttgctcttgctgatgaccttgtttctaggggatttcattgccgcaaaggaaaagcctacttgttcaataaagtggtgaacgtaactgttggacctcaggaggagagagcgatgctttctgggatgcacacagtagcagatatattttgttgctgttgcgggcaaattgttggctggaaatatgaggctgcacacgaggaaagccagaagtataaagaaaagaagtttgttctcgaaaggggtaggatcattgacggagttgacactgaattctacatcgattctcgtccaactattagtgatactgaggatgcataggccttgttatgtgatgtatctatctaaacatgtgtggttgttgtatcttgtaagtctagtttgtagatatagggaagaagctgtttgtatcaaaatattgtgtggttgtagcttgtaagtccagtttgctagacgctagtatataaagaaggttatccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85242" stop="89846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85546" g_stop="85704" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="181" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85705" i_stop="87499" i_length="1795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87500" g_stop="87543" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="225" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87544" i_stop="88839" i_length="1296">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88948" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="334" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88949" i_stop="89137" i_length="189">
            <donor d_prob="0.191" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89138" g_stop="89193" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="390" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89194" i_stop="89305" i_length="112">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89306" g_stop="89546" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="631" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="662"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U344012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85546" e_stop="85704"/>
          <exon e_start="87500" e_stop="87543"/>
          <exon e_start="88840" e_stop="88948"/>
          <exon e_start="89138" e_stop="89193"/>
          <exon e_start="89306" e_stop="89546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAACTGACCAAAAAAATCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGGGTAACAATTTCTTCAATTTCCCTTTAAGTTTTTATGAATAAAAATCTTATCTTTGTTATATAGAGCTTTTCATTTGGTTTTGGCCTTTTGGGGCTTGTTGTTTCTTTGAGTAATTAGCTTTTATTTACTTGTTTTTGCATATTAGATGGTATTATTTTGTTTTGAGAAAGGATGCTTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGGTATTTTTTTTGTTTTGAGAAAGAATAATTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGTGGTTGTTTCTACACATCCTCCAAAAGTACAACCAAAGGAGAAAACAGGGCTATTCAACTAGAAAAAAAAAATGTTCTTGCATGATCATTTGCTTGTGCTAGTTTTTTTGGACACATGTATGTCGAGTCATGTAGTACTTAGGCATTTAGCCATGTTTCATTGTGAAATCTTAAAAAAAAGTGGATTCTTTTTTTCAAAGTGAATTTTATGCCCAAACATGCTTTTCAGTGTTTAACTCCGGAAAAATAAGTGTTCTTTTTTAATAATATATGGAAACATGTGTAGAGAGTTGTTATGCTTTTTGCTCTATTTGTTTGTTTCGTTCTGGGCTGTGACGGAAGTGATTTAACTTGATAATTGGAAGACTAGGTATGGTAGTCATGCTTATTAGCCTTCAAGTCGGAAGTGATTTGGTTTCTATCATTAGGTATGAGATCTTTACCTATTTATACTAAATGTCACCTAGCTTAATTTTTCAAAGTTGACGAAAAGTTTTTAACATCTTTCGAGATGGATGTATTTTGTGATATATATGGAAGCGTTTATGCTATAATTGAAGTGTTGAAAATGGATTATGTACAATTTGCATGAATTTTGTAACCGATATCTCCACTTGGTTTATTATTCTGGCTTTGGTTATGTTTTGAATACCTTTGTTTGCTCTCATGCTATTAACTTCTTACCAAATGGATGTATTTTGTGATATATATGGAAGCATTTGTGTTATAAGTGAAGTGTTGAAAATAGATAATGTACAATTTGCATGAATTTTGTTACCGATATCTCATTTGGTTTACTATTCTGGCTTTTGTTATGTTTTGAGTACCTTTGCTTGCTCTCATGCTATTCTATCTGATAATACAATCAAATCTCTTTATAACAATAACATTTGTCCTAATATTTTTTGGTTGCATAGAAAAATGTTGTTATAGAGAATGTATAATATAACATTACATTGTATGTCCTCACCCCTACTTCAAAACCTTTCTTTTAGTCGAGGGTCTATAGGAAACAATCTCTCCCTCTAGTCTCTACCCCACAAAGGTCTGTGTACATTATATCCTTCGCAGACTCCACTTGTGAAATTATACTAGGTATATTGCTGTTTTAAATGACAGTATAAAGTACATTTTTGTGTGGATGATCAATGAGAACGGATCTTGTAAACAGATTTAAGATTTAGCTCATTAGTTAATTTCTATATTTTGAATGTAATTATTGATTATCCTTCTGTCAAATATAAGTGTCTATCCCTAAAAGAAATTAAACTTAAGTTTTTCTCTTGAATAGCTATAAATGATGACATGCCATTTTCATGCAAGTGTTAATAAACTCGAATAACACAATGTAAAAACATTAAGTTTAATTACCAAATTCACAAAGATCAGGCTTGGAGAGTGATTCAGCTTTTAATCAATCTTTATCATTATGTAAATTTTCTGTCACGATTTCTTATTCATTGTATTGCACTTTTGGCTTGCTTGGTTTCTGGTTTATTAACGGTTGGTTTTATGGTCAGGGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGTGTGAGTGCCTATTAATTTCTCAACTACACATTGAGTAACTAGTTTTGTTTTATGACTTAATGTGCTTGTTTCACACTTGAATTGACTTCGTTGATAGTCATGCATTCATTTAAGATTGATGTCTGTGACATTCTTTTTGTATCCTATATTACTAGTTATGGTATCGGGAAGAGATTGAGATTTATTAGATGTAGTTACATAAATTGGGACAGAGTGATTGTTAAATTTTTTGACAAAAGAAAAAGATATATGTTATATTAACTTTATGTTTTATATGCCGTCTTTTCTTTGTATGATAGATTCATGATTGGCAGTGTTATGGAATTGATCTGTCCTTCATCCCTTGTATCAAATTCTCAAAATTTTACCACGTCGACGTGTCTGCGAATCATATGCATTTCACATCCATCTTCGTGCTTTCTAAATTGTAATGGATTGAGGAATTCACATTGTATGAACTGTAATACTATAACTTTAACCTCTAGAGAGATGTTATATGTACAAGAAAAGACTTCCTTTCTAGTGATGACCCCGACTTATTAGTGAATCCAAAAGAGTTCCCAATTTCAGTATTGCACCCATATATTAATTTTACGTTACTGAACAATTAAACGCTAGAGCAACAGCATCCAACTTAACCGTACCACTTGAATGCACTAAACATCAGCAACTTGATGTGCATTGAACATGGCTGTTGAGCTGAAGATGTATTTGAATAGAAATTAGTTTTTGCTTTTTCTAGTAGCGGAACATGTATATTTTCTCTTATCCGTCCTATCTTATAGATTTGGGTTCCCAAGAGGTATCACTAATAAGAAAGATTTTAGACAAACCTCCCTTTTTTCTTTCTCACAAATAGGAAGTTCCGATTCCAACTTGGATATTAAAGGGATTACCAGATATGCACATTTTTTCTCGAATTTTACTCTTACCGCTCTGATTTTCTATGCAAGATGTTGTCTAATTAGACCACGAATTATTAATGTATGGTAAAGTTCTATTGCTATTTCACGAGGCAATCCACTTTGATGTAGTGAAAGTGAAGGATCCACGACAATGAATTTTCAAAAACATGATCAGAAAATGAAAAAAAAAAAGATCTTTGGTAAGGACAAAATATATCAAGTTAGTAAAGACTAAAGATTACTGCTTCATTTCTCTTTCTTTGGTCGATGATCATAGAAGCCTTGGCAGTGCAATAGATATCATTTTCTCTGCCTTCCCAACACTTTTCAACTGTGCACCCTTTGATATATATGCGGAGGTCTAACTGCTCCGTCTGATTTTGTGATTCAGGGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATATGTATTCCCTTTCGTTCTCTCTCTCTATTTCTCGTGCATGTAGAAATAGACACCAAAACAAACGCACAGACAAAAAGAGGAGGACAATAGTTGCTCCTCTCGCCATAAATATGTTACCAATTGCACATGCATGATGTACCTACACCGGAAACTTTGTTAACAACTACCACTTCACGTTTCTATCATGCAGGAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAGGTGCATCTTTTTTCTTGTTGATTTCACATTCGACATATATACATGAAAACATCTTTCTGTTTTGAATCTCTTCCATATAATACTCCATGCTCTTCTGGTTGTTTGTTAACAGGGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAA</genome_strand>
        <mrna_strand>TCTCACAACTGACCCAAAAA-TCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCATTGCCGCAAAGGAAAAGCCTACTTGTTCAATAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATAT.............................................................................................................................................................................................GAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAG................................................................................................................GGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321470" ref_strand="+" ref_description="SGN-U321470        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | prenylated rab acceptor (PRA1) protein-related, contains Pfam profile PF03208: PRA1 family protein | chr4:13753219-13754751 REVERSE | Aliases: T29A15.30, T29A15_30(evalue: 3e-51, score=195) genbank/nr: gi|18417012|ref|NP_567776.1| expressed protein [Arabidopsis thaliana] gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana](evalue: 2e-49, score=195)">
      <seq>aaaaatggcgttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggattagagcaccgcccagttatcaacaaagcttgattcgcattgctcagtgtgctactgcagttattctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92091" stop="97026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92391" g_stop="92852" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93644" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="605" r_length="143" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93740" g_stop="93751" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="617" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U321470" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92391" e_stop="92852"/>
          <exon e_start="93500" e_stop="93644"/>
          <exon e_start="93740" e_stop="93751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGT</genome_strand>
        <mrna_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATC-AACAAAGCTTGATTCGCATTGCTCAGTGTGCT-ACTGC...............................................................................................AGTTATTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324267" ref_strand="-" ref_description="SGN-U324267        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>taaaaaaaaaagggaagttgaaactagaaactaatatgataattatagtgaaggagtactgagtaggattgtacaatattaaaggtttaacgaatttattgaaccatatattaaaaaaaataatttatcgaaacatcaacattaaaggtttaacgaatttattgaaccatatattgaaaaaaccaatttatcgaaacatcaacctatttttttttagaagacccaccggaatttaggctttcgagtttttcaaattcttttgtttgtcatagtccacaaaattgtttggcatttgaaaaggttgttcacaacattggaactatgatcatggaaaaactactaaaaaacacatctaatatttttattatttttaatatttcattttatttttgaaaatctttaatacttcttatttctttaatgtattcgagccagtatttactgtaattgaattacatattatgtatttgatttattttatctggtccattttataatgtattcgagctacatattatgtatttaatttatattataatgtattcgagatactctttaatgtatctgagctacaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102632" stop="53264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102334" g_stop="101754" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101753" i_stop="99456" i_length="2298">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99455" g_stop="99431" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="606" r_length="25" r_score="0.520"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U324267" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324267" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102334" e_stop="101754"/>
          <exon e_start="99455" e_stop="99431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACATATTAATGTATCTGATTTGTGTTACTTTTTAAGGCATTAATACAATTACAAACTAAAGAGAGACATATTGTAATTTCATCTTAAAACTATATGACCTAAAAGTTATCCTTTGATTATTCTCCTATATACATAAAAAGTTTTTTACTCTAGCTACAGTGTAATTTTCCGATGAAGAGGCATCCGTCGATACCCCTCTACATGTGGTTCCACCATTGCCCACATCTTGAAATGTTCTTTATGAATATCCCCAAAGTTTATGGAATATTCGAGATTTTCTTGAGAAAGACAATACGTGATGTCTTCATGCTCTCTTGTGAAAATCCATGGGTTATAAAATATTCGAGATGTCTGTCTTTTTTAAGGAAATATATTACCTTTTAAATAGATATAAACTAGAACTTAGTGTAGAGTAATCTTTAAATAAAAAAATATTTTGAAATTGATCTAAATAAAATTAATTTATCTAAATATTAGTGCATGCCTTTTATGGCCTTGATTTGTATAAAAGAAATAATTGTACAAACATGGTAGTTTGGCTTGCTTACGTGTTTTTCTAGCTCAAGTTATTTTCTAAGAGTTTTTAAGTTGAGTGACTTCACACCGACAAAAAGTAGTTTTTATTTTTTTATTTTTATATAGATAAAAAACTCTAAATTTGATTAATATTTGAGAAATTAACTCACAGAAATTTAACTACTCTATGTTTTTCATATCCTTCAAAATTTTCTTTTGAATGTATACCAATTTTTTTAAGAATTATGTATTTTTTAGAATTCGAATGGAGTGTGACAATATAGTCAATGGATCTAACCAAATATAGTTAATAATGACTACTAGGTATGCATTTCATCATCATAGTGAATAAAGTGCAAATATTTTTTTTATAAGAATACATTTAGGATGAGGTTTTTCTCAAAAGAGTTAAAGATTGCAATAGCACACAATAAATATTTTAAACTAGAAGTAAATGAAGAACAATATTACTTGTATGAGCATAATATATAGTTGCATTATCTCATTGCCTCTTCTTTCATTGTGGCTTGCTTTCTTCTTTCTCTTTTGGTTTTTCTTCTTCTACCTTCTTATCTTTAGGTTTTGCTTCTTCAACTTTGGCTTTAGGTTTTGCTTCTTCTTTGGCTTTTGGTTTTCCTTTTTGGGGCTTCATGAAACAAAAACAAGAACAACATGGACATTGGAACAAGAACTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACCTCCCCCTTCTACTTGTGTTATATAAATAAGTAAGAACTACTAGTATAGTTGTTTGGGATTAGACAGTCTGGTGTATAAAGTATCTCGCGTTTACGTAAGGGTCAAAAAATGTTAGTTATTTCGAATTAGACGTACAAAACATTTCATGTTCACATAGTGTTAAAAAAATATTGCATCTTAAGGGGTGATATAAATATATATAGTCTATCTTAATGTAAGCAATAGTGACCACTTTCACAAAGACGTTTAGTTTTATGAATGATTATTGAACTTTGTAATTATCACACTAAAGTCATAAATTATCGTTTATGATGAAAAAAAATCAAATTAGGTGATTAAAGTATCAAGAAAATTACTTAACTTCATTAAGTATCATTGAAAGTCATTAGGAGAAGAAAGCAAAAGAGAAATTTAATTAGATGAGTGACTTTATGTGATAAATATAATTGAGTGATTGTTTGCTTTTTAAAAAAAAAAAAGTTTACTGATTCTCTGTTGATATTAAAATAAAGTTGAATATTTTTTTTATCACCACAAATAATTTTTTTAACCTTAGTGTAATAAAATAAAAGTTGAGTAATCACATGTGAAACTAATACAACCCAAGATTAAATTAGTCCACTATATGTTTGTGTATAAAAAAATGATGTGCTTTAGTTATAGCTTTTCTTTTTGTTATTTTTGTTCAATTATTTGTTTTCTTTGTTGAAATTTTATCATTAATGCTGCAATAATTCTTTCACATATTCCATTTCAATCACTTTCAATAATGAATATGTCTATAGCAAAAGAACGTGAAGTGGGGCATCCTAAGTTTTCGTTATATACGGTGTCGTGACGGATTTAAAATTTAAATTTTGAATCGTAAACTTCTAACCTATTTTATGTTATTGGATTCACAATTCATTATTGGTACACTTAATTTGCGAATTTCTAAATATTTATATATGATTTGAATTAATGTTACTGAATTCTATCCAATACGTATAATAGAGTGTATGTTGTATGTGATACCGTGAAAAACATATATTCATATTTGGTAATTCAATTTTTTTAGGAAAAATAAGTTTGTTTGTTTTTTT</genome_strand>
        <mrna_strand>TAAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331234" ref_strand="+" ref_description="SGN-U331234        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21890020-21890529 REVERSE | Aliases: K19P17.4, K19P17_4(evalue: 7e-05, score=42.7)">
      <seq>gaagttcttgttccaatgtccatgttgttcttgtttttgtttcatgaagccccaaaaaggaaaaccaaaagccaaagaagaagcaaaacctaaagccaaagttgaagaagcaaaacctaaagataagaaggtagaagaagaaaaaccaaaagagaaagaagaaagcaagccacaatgaaagaagaggcaatgagataatgcaactatatattatgctcatacaagtaatattgttcttcatttacttctagtttaaaatatttattgtgtgctattgcaatctttaactcttttgagaaaaacctcatcctaaatgtattcttataaaaaaaatatttgcactttattcactatgatgatgaaatgcatacctagtagtcattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100253" stop="101245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100553" g_stop="100950" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-U331234" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100553" e_stop="100950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</genome_strand>
        <mrna_strand>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337992" ref_strand="+" ref_description="SGN-U337992        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctagttctaagacaaccacaacaaaaactctctcaaaatcctcaaaacaaccccttttctctttaaaattatcttttaaaagattgtaataaagatttcagttctttattctaaaagtttgttttaagtaaaagtttggaagcttttcgggttttccgaaagggaaacttcactctgttctaaataatgtaagttttcatatttatgtttctagtaaacttcccatatatgtaaattatgtgtgtttataaaatgttaattatttgataaattcatgtaaatttatgaatatcatcatgaatctatattacttagtatatggttagtctcttagcttcttaaaagtatcgatggattaacctgtaaattcctaggacattgtcaggttaaatgttctgagaaaaaaactatgaataaccaaatccggggtgtggttaaagaagattacttttaagaacaaaggctaagagaaagagatgtacaataataatagatagattcatgaatggacagagtccataaaaaaaaaagggaagttgaaactagaaactaatatgataatttatagtgaaggagtacttgagtaggattgtacaatattaaaggtttaaccgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103149" stop="101939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102852" g_stop="102239" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U337992" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102852" e_stop="102239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCTAAGACAACCACAACAAAAACTCTCTCAAAATCCTCAAAACAACCCCTTTTCTCTTTAAAATTATCTTTTAAAAGATTGTAATAAAGATTTCAGTTCTTTATTCTAAAAGTTTGTTTTAAGTAAAAGTTTGGAAGCTTTTCGGGTTTTCCGAAAGGGAAACTTCACTCTGTTCTAAATAATGTAAGTTTTCATATTTATGTTTCTAGTAAACTTCCCATATATGTAAATTATGTGTGTTTATAAAATGTTAATTATTTGATAAATTCATGTAAATTTATGAATATCATCATGAATCTATATTACTTAGTATATGGTTAGTCTCTTAGCTTCTTAAAAGTATCGATGGATTAACCTGTAAATTCCTAGGACATTGTCAGGTTAAATGTTCTGAGAAAAAAACTATGAATAACCAAATCCGGGGTGTGGTTAAAGAAGATTACTTTTAAGAACAAAGGCTAAGAGAAAGAGATGTACAATAATAATAGATAGATTCATGAATGGACAGAGTCCAT-AAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAA-TTATAGTGAAGGAGTAC-TGAGTAGGATTGTACAATATTAAAGGTTTAA-CGAATT</genome_strand>
        <mrna_strand>CTAGTTCTAAGACAACCACAACAAAAACTCTCTCAAAATCCTCAAAACAACCCCTTTTCTCTTTAAAATTATCTTTTAAAAGATTGTAATAAAGATTTCAGTTCTTTATTCTAAAAGTTTGTTTTAAGTAAAAGTTTGGAAGCTTTTCGGGTTTTCCGAAAGGGAAACTTCACTCTGTTCTAAATAATGTAAGTTTTCATATTTATGTTTCTAGTAAACTTCCCATATATGTAAATTATGTGTGTTTATAAAATGTTAATTATTTGATAAATTCATGTAAATTTATGAATATCATCATGAATCTATATTACTTAGTATATGGTTAGTCTCTTAGCTTCTTAAAAGTATCGATGGATTAACCTGTAAATTCCTAGGACATTGTCAGGTTAAATGTTCTGAGAAAAAAACTATGAATAACCAAATCCGGGGTGTGGTTAAAGAAGATTACTTTTAAGAACAAAGGCTAAGAGAAAGAGATGTACAATAATAATAGATAGATTCATGAATGGACAGAGTCCATAAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTTATAGTGAAGGAGTACTTGAGTAGGATTGTACAATATTAAAGGTTTAACCGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328502" ref_strand="+" ref_description="SGN-U328502        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G07260.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr1:2227593-2229318 REVERSE | Aliases: F10K1.3, F10K1_3 (evalue: 1e-22, score=102) genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 2e-39, score=164)">
      <seq>tattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaggatttggaaatggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggccaaaaagttatagtgaaagcagaggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttctaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="110265" stop="109082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109965" g_stop="109383" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U328502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109965" e_stop="109383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317922" ref_strand="+" ref_description="SGN-U317922        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: AT3G21750.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr3:7664352-7666202 FORWARD | Aliases: MSD21.8 (evalue: 1e-64, score=243) genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 2e-131, score=471)">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112622" stop="110390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112322" g_stop="111904" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="110690" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="975" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U317922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112322" e_stop="111904"/>
          <exon e_start="111245" e_stop="110690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336332" ref_strand="+" ref_description="SGN-U336332        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 1e-07, score=60.5)">
      <seq>tgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatgtatttcaaattaactttatgtgtccaaggctttgatacagtaacaaggtatgttgcttggactctttaaaaatgttgatggatatgtgtgtcggatactgcaaaagtagtgtacataattttggagagattgaacatacaacttgtgatttatagattagatgcatgtcatcattgtcatgaatttggctgctactacaaaaacaaaaagattggtacttccttccctcccaactttatgatacttttaagcatttcgagagacaaatagtttttctcaaagcatgatatgccttttcaagtattaaaaattattaattattgtgacttatagtatgtttcaaatataaattttatttacaaaagcttaaagattatatgcccgaattcatggtcaaaatttaaaagtttggctctcgaaatccaaatgatgtcgcatgaccgggggagtattttaagttgaaaggggtgttgcactactacaccaaccttctcaatttaacgcgactagaaaatgtatttcaatgactttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112319" stop="111063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112019" g_stop="111363" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-U336332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112019" e_stop="111363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</genome_strand>
        <mrna_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1110" PGL_stop="1671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1110" e_stop="1531"/>
            <exon e_start="1665" e_stop="1671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.609" e_score="0.998"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="1110" e_stop="1531" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.609">
            <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="1665" e_stop="1671" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1110" stop="1531"/>
              <exon start="1665" stop="1671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA : AGATAAA</gDNA_template>
            <first_frame> R  A  G  N  F  D  F  G  G  C  H  S  L  T  G  S  S  I  L  I  L  D  V  V  E  T  R  K  T  N  L  F  Y  C  P  *  L  V  F  M  M  S  S  P  *  Y  K  T  W  V  I  D  C  I  S  S  M  T  P  E  S  R  T  K  S  R  G  R  L  *  K  L  V  E  E  *  K  *  F  W  I  P  E  T  K  K  W  C  C  V  A  G  V  *  F  *  G  I  L  F  L  D  G  T  G  Y  Q  C  P  I  S  I  T  *  E  I  C  H  S  F  M  I  I  R  N  I  F  V  I  F  S  L  N  K  L  N  C  C  S  S  K :   D  K </first_frame>
            <second_frame>  E  L  V  I  S  I  L  G  V  V  T  A  S  Q  V  R  P  F  *  S  L  M  W  S  K  P  E  K  L  T  C  F  I  V  R  D  S  C  L  *  *  V  H  P  N  I  R  L  G  *  *  I  V  S  V  Q  *  R  Q  N  Q  G  Q  N  L  G  E  G  C  K  N  *  L  K  N  E  S  S  S  G  Y  Q  R  P  R  S  G  V  V  L  Q  V  Y  S  F  K  E  Y  F  F  L  T  A  Q  A  I  N  V  P  *  V  *  L  R  K  S  V  I  H  L  *  *  F  G  I  Y  L  L  F  F  P  *  I  N  *  I  V  V  R  Q   : K  I   </second_frame>
            <third_frame>   S  W  *  F  R  F  W  G  L  S  Q  P  H  R  F  V  H  S  N  P  *  C  G  R  N  Q  K  N  *  L  V  L  L  S  V  T  R  V  Y  D  E  F  T  L  I  *  D  L  G  D  R  L  Y  Q  F  N  D  A  R  I  K  D  K  I  *  G  K  V  V  K  I  S  *  R  M  K  V  V  L  D  T  R  D  Q  E  V  V  L  C  C  R  C  I  V  L  R  N  T  F  S  *  R  H  R  L  S  M  S  H  K  Y  N  L  G  N  L  S  F  I  Y  D  N  S  E  Y  I  C  Y  F  F  L  E  *  I  K  L  L  F  V  K  :  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17748" PGL_stop="7610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17748" e_stop="17118"/>
            <exon e_start="15011" e_stop="14934"/>
            <exon e_start="14256" e_stop="14215"/>
            <exon e_start="14128" e_stop="14023"/>
            <exon e_start="11415" e_stop="11351"/>
            <exon e_start="9857" e_stop="9819"/>
            <exon e_start="9741" e_stop="9637"/>
            <exon e_start="9532" e_stop="9445"/>
            <exon e_start="9171" e_stop="9125"/>
            <exon e_start="7942" e_stop="7610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17748" e_stop="17118" e_length="631"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="17117" i_stop="15012" i_length="2106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15011" e_stop="14934" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14933" i_stop="14257" i_length="677"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14256" e_stop="14215" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14214" i_stop="14129" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14128" e_stop="14023" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11415" e_stop="11351" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.985">
            <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9857" e_stop="9819" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9741" e_stop="9637" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9532" e_stop="9445" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9171" e_stop="9125" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7942" e_stop="7610" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17748" stop="17158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17162" stop="17118"/>
              <exon start="15011" stop="14934"/>
              <exon start="14256" stop="14215"/>
              <exon start="14128" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG : GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG : AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG : GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG : GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG : ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG : AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG : GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA : GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG : ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</gDNA_template>
            <first_frame> L  F  S  L  P  *  T  L  I  T  S  C  K  Q  N  Y  Y  Q  S  T  F  H  H  C  K  S  S  N  G  S  L  Q  T  T  L  P  S  S  S  S  L  F  I  Q  K  P  I  S  L  F  S  Y  F  P  F  S  F  A  Q  I  S  L  F  L  I  I  I  R  K  P  E  F  E  *  P  K  F  N  S  T  R  F  L  H  P  *  E  P  A  R  E  *  *  P  T  R  I  K  *  P  R  W  G  *  S  G  W  W  V  V  D  P  G  G  S  A  V  L  E  G  Y  P  E  N  S  S  D  F  L  S  D  K  G  S  A  V  T  G  G  F  A  G  R  G  E  R  E  N  G  R  Y  G  *  *  D  G  E  R  E  E  K  N  R  G  A  K  T  G  G  N  E  E  S  Y  E  C  *  R  G  N  D  F  V  S  N  I  D  *  C  E  E  *  *  K  E  E  K  S  C  L  *  S  *  R  G  H  S  A  C  K   : G  *  C  Q  E  E  I  *  *  N  S  G  S  S  C  C  F  D  S  *  Y  A  S  K  *  S   : E  T  *  R  Y  S  G  C  S  S  W  V  W  K   : G  I  S  D  C  C  F  C  *  R  S  C  C  *  *  S  P  R  S  R  G  *  C  C  W  W  F  G  A  H  R  E  H  Q  E  W :   K  C  E  D  *  F  *  Q  M  F  F  H  S  C  N  D  A  E  L  E  T   : D  C  E  V  L  E  A  V  D  A  R  Y  *   : E  R  Y  C  Y  Q  R  Y  N  K  S  S  E  R  S  *  A  R  C  T  V  Q  K  R  *  N  C  N  C  A  C  R  N  W  E   : G  K  F  S  R  R  G  I  V  *  K  H  W  C  I  C  T  *  T  F  A  S  E  A  C  W  S  K  K  E :   L  K  I  C  W  L  C  E  Y  S  P  S  L  Q  Y   : D  G  S  I  I  S  C  Y  N  T  V  V  I  D  C  S  R  P  P  C  K  E  V  C  S  M  I  V  F  E  *  K  I  Q  F  *  L  D  T  L  S  *  *  I  Q  F  *  L  G  T  M  L  Y  S  F  V  *  I  S  *  F  S  H  I  R  K  K  V  F  P  S  Y  F  C  F  F  P  F  T  V  M  I  Y  A  Q  P  S  A  *  N  P  F  L  T  Q  N  S  L  L  L  L  H  I  F  I  V  L  S  E  K  I  </first_frame>
            <second_frame>  S  S  L  F  P  K  P  S  L  H  L  A  N  R  T  T  I  S  P  P  F  T  I  V  R  A  P  M  A  A  F  K  L  L  Y  Q  A  R  R  H  C  S  Y  R  S  P  S  H  F  S  P  T  F  R  S  H  L  H  R  F  L  S  S  S  S  S  S  E  N  P  N  S  N  N  P  S  S  I  Q  P  V  S  Y  T  P  K  N  P  P  E  S  S  S  R  P  E  S  N  N  P  D  G  V  K  A  D  G  G  L  W  T  R  E  D  L  R  Y  L  K  D  T  P  K  I  A  P  I  S  Y  P  T  R  V  A  P  L  P  E  D  L  P  E  E  E  K  G  K  M  E  G  M  G  D  E  M  E  R  E  R  R  R  I  E  A  Q  K  R  A  A  M  R  R  V  M  N  A  E  E  E  M  I  S  F  P  T  L  I  N  V  K  S  D  E  K  K  K  K  A  V  Y  D  L  K  E  A  I  R  L  V  K  :  A  N  A  K  K  K  F  D  E  T  L  E  A  H  V  V  L  T  P  D  M  R  R  S  D  L  :  K  L  E  G  T  V  A  V  P  H  G  F  G  K  :  V  Y  R  I  A  V  F  A  E  G  A  A  A  D  E  A  R  E  A  G  A  D  V  V  G  G  L  E  L  I  E  N  I  K  S   : G  N  V  K  I  D  F  D  K  C  F  S  T  H  A  M  M  P  N  L  R  Q  :  I  A  K  Y  L  R  Q  L  M  P  D  T  K  :  K  G  T  V  T  K  D  I  T  K  A  V  K  E  A  K  R  G  V  P  F  K  K  D  K  T  A  I  V  H  V  G  I  G  K  :  V  S  F  Q  E  E  A  L  C  E  N  I  G  A  F  V  H  E  L  L  R  Q  K  P  A  G  L  K  K   : S  S  K  Y  A  G  Y  V  N  T  V  H  L  C  S  T  :  M  G  P  S  F  P  V  T  I  Q  S  L  S  I  A  A  D  R  H  A  R  K  Y  V  Q  *  *  Y  L  N  R  R  S  N  F  N  L  I  P  S  L  N  R  S  N  F  N  L  V  L  C  C  T  H  L  F  K  F  L  D  F  P  T  L  E  K  R  C  F  L  V  I  F  V  S  S  P  L  L  *  *  S  M  P  S  P  L  L  E  T  P  F  *  L  K  I  H  Y  C  C  F  T  F  L  L  F  C  Q  R  K  * </second_frame>
            <third_frame>   L  L  S  S  L  N  P  H  Y  I  L  Q  T  E  L  L  S  V  H  L  S  P  L  *  E  L  Q  W  Q  P  S  N  Y  S  T  K  L  V  V  T  V  H  T  E  A  H  L  T  F  L  L  L  S  V  L  I  C  T  D  F  S  L  P  H  H  H  Q  K  T  R  I  R  I  T  Q  V  Q  F  N  P  F  P  T  P  L  R  T  R  Q  R  V  V  A  D  P  N  Q  I  T  Q  M  G  L  K  R  M  V  G  C  G  P  G  R  I  C  G  T  *  R  I  P  R  K  *  L  R  F  L  I  R  Q  G  *  R  R  Y  R  R  I  C  R  K  R  R  K  G  K  W  K  V  W  V  M  R  W  R  E  R  G  E  E  S  R  R  K  N  G  R  Q  *  G  E  L  *  M  L  K  R  K  *  F  R  F  Q  H  *  L  M  *  R  V  M  K  R  R  K  K  L  F  M  I  L  K  R  P  F  G  L  *  R :   L  M  P  R  R  N  L  M  K  L  W  K  L  M  L  F  *  L  L  I  C  V  E  V  I  * :   N  L  K  V  Q  W  L  F  L  M  G  L  E  R :   Y  I  G  L  L  F  L  L  K  E  L  L  L  M  K  P  E  K  Q  G  L  M  L  L  V  V  W  S  S  *  R  T  S  R  V  :  E  M  *  R  L  I  L  T  N  V  F  P  L  M  Q  *  C  R  T  *  D  R :   L  R  S  T  *  G  S  *  C  Q  I  L  R :   K  V  L  L  P  K  I  *  Q  K  Q  *  K  K  L  S  E  V  Y  R  S  K  K  I  K  L  Q  L  C  M  *  E  L  G  R :   *  V  F  K  K  R  H  C  V  K  T  L  V  H  L  Y  M  N  F  C  V  R  S  L  L  V  *  K  R  :  A  Q  N  M  L  V  M  *  I  Q  S  I  S  A  V  R :   W  V  H  H  F  L  L  Q  Y  S  R  Y  R  L  Q  Q  T  A  M  Q  G  S  M  F  N  D  S  I  *  I  E  D  P  I  L  T  *  Y  P  L  L  I  D  P  I  L  T  W  Y  Y  V  V  L  I  C  L  N  F  L  I  F  P  H  *  K  K  G  V  S  *  L  F  L  F  L  P  L  Y  C  N  D  L  C  P  A  L  C  L  K  P  L  F  N  S  K  F  T  T  V  A  S  H  F  Y  C  S  V  R  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17747" stop="17118"/>
                    <exon start="15011" stop="14934"/>
                    <exon start="14256" stop="14215"/>
                    <exon start="14128" stop="14023"/>
                    <exon start="11415" stop="11351"/>
                    <exon start="9857" stop="9819"/>
                    <exon start="9741" stop="9637"/>
                    <exon start="9532" stop="9445"/>
                    <exon start="9171" stop="9125"/>
                    <exon start="7942" stop="7865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFPKPSLHLANRTTISPPFTIVRAPMAAFKLLYQARRHCSYRSPSHFSPTFRSHLHRFLSSSSSSENPNSNNPSSIQPVSYTPKNPPESSSRPESNNPDGVKADGGLWTREDLRYLKDTPKIAPISYPTRVAPLPEDLPEEEKGKMEGMGDEMERERRRIEAQKRAAMRRVMNAEEEMISFPTLINVKSDEKKKKAVYDLKEAIRLVKANAKKKFDETLEAHVVLTPDMRRSDLKLEGTVAVPHGFGKVYRIAVFAEGAAADEAREAGADVVGGLELIENIKSGNVKIDFDKCFSTHAMMPNLRQIAKYLRQLMPDTKKGTVTKDITKAVKEAKRGVPFKKDKTAIVHVGIGKVSFQEEALCENIGAFVHELLRQKPAGLKKSSKYAGYVNTVHLCSTMGPSFPVTIQSLSIAADRHARKYVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10760" e_stop="9983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="10760" e_stop="9983" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10760" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</gDNA_template>
            <first_frame> L  I  S  N  K  T  G  S  S  F  *  K  F  S  Q  A  Q  S  L  D  F  S  L  S  Y  L  R  G  E  N  I  L  S  G  L  L  P  D  T  S  F  L  C  Y  A  F  A  S  F  L  Q  A  N  T  F  V  E  A  E  Q  S  D  G  R  K  *  K  L  E  E  K  Q  R  L  F  S  P  C  K  K  N  E  *  L  V  F  L  F  N  S  F  *  T  D  I  *  I  E  V  D  E  L  E  I  L  C  L  K  L  Q  K  L  V  I  W  K  D  F  *  N  K  S  K  R  T  L  G  D  T  N  L  Y  A  T  I  V  M  W  T  Y  K  G  N  *  D  V  W  L  Y  L  V  F  P  Y  F  V  F  S  Q  E  I  W  F  C  I  W  S  R  N  T  G  K  G  L  T  A  V  I  N  V  Y  I  K  N  S  F  F  L  V  I  A  F  S  L  S  *  D  N  F  S  Y  E  V  L  L  K  K  L  C  G  S  I  M  *  K  *  L  Y  M  N  *  S  F  *  L  N  M  A  G  K  G  L  E  K  E  G  M  E  G  *  I  S  *  A  L  *  Q  G  G  Y  *  S  P  L  I  S  I  L  I  </first_frame>
            <second_frame>  *  Y  Q  I  R  R  V  P  L  F  K  N  S  L  R  H  S  P  L  I  F  L  S  P  T  *  E  G  R  I  S  F  P  A  C  C  R  T  H  H  F  F  A  M  L  L  L  P  F  C  K  L  T  P  L  W  K  Q  N  K  A  T  E  E  S  E  N  *  R  K  N  R  D  F  F  L  L  V  K  K  T  S  D  *  F  F  S  S  I  V  F  K  Q  T  Y  E  *  K  L  M  N  W  R  F  Y  V  *  N  Y  K  N  *  S  Y  G  K  I  S  E  I  K  V  K  E  H  L  G  T  P  I  Y  M  L  R  L  L  C  G  H  T  R  V  I  R  M  S  G  C  I  W  S  S  H  I  L  Y  L  V  K  K  Y  G  F  V  F  G  Q  E  I  R  G  K  D  *  Q  L  L  L  M  F  T  S  R  I  V  F  S  *  *  L  H  S  L  Y  P  R  I  I  L  V  M  K  C  Y  *  R  S  C  V  E  V  L  C  K  N  N  Y  T  *  I  D  L  F  S  *  I  W  L  G  R  D  *  R  R  K  G  W  R  V  E  L  V  K  H  C  N  K  V  A  I  E  V  L  *  F  Q  F  *  Y </second_frame>
            <third_frame>   D  I  K  *  D  G  F  L  F  L  K  I  L  S  G  T  V  P  *  F  F  S  L  L  L  K  R  G  E  Y  P  F  R  L  A  A  G  H  I  I  S  L  L  C  F  C  F  L  F  A  S  *  H  L  C  G  S  R  T  K  R  R  K  K  V  K  I  R  G  K  T  E  T  F  F  S  L  *  K  K  R  V  T  S  F  S  L  Q  *  F  L  N  R  H  M  N  R  S  *  *  I  G  D  S  M  F  E  T  T  K  T  S  H  M  E  R  F  L  K  *  K  *  K  N  T  W  G  H  Q  F  I  C  Y  D  C  Y  V  D  I  Q  G  *  L  G  C  L  V  V  S  G  L  P  I  F  C  I  *  S  R  N  M  V  L  Y  L  V  K  K  Y  G  E  R  I  D  S  C  Y  *  C  L  H  Q  E  *  F  F  P  S  D  C  I  L  F  I  L  G  *  F  *  L  *  S  V  I  E  E  A  V  W  K  Y  Y  V  K  I  I  I  H  E  L  I  F  L  V  K  Y  G  W  E  G  I  R  E  G  R  D  G  G  L  N  *  L  S  I  V  T  R  W  L  L  K  S  F  N  F  N  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26686" PGL_stop="26139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26686" e_stop="26293"/>
            <exon e_start="26212" e_stop="26139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.755" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26686" e_stop="26293" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.755">
            <gDNA_intron_boundary i_start="26292" i_stop="26213" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26212" e_stop="26139" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26686" stop="26293"/>
              <exon start="26212" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTT : GGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</gDNA_template>
            <first_frame> A  V  D  F  S  G  K  D  R  Q  E  P  V  N  L  S  R  W  K  V  R  L  E  V  L  L  R  R  N  P  T  P  A  V  K  R  F  L  A  T  L  A  F  Y  R  L  P  E  I  L  A  G  V  L  L  I  S  *  K  N  W  S  I  H  Y  L  K  A  W  L  E  I  Y  R  D  L  C  I  S  A  N  C  M  L  A  K  *  T  P  N  Y  I  S  N  Q  I  P  G  *  C  K  S  C  N  I  L  T  G  K  V  Y  L  L  D  S  L  E  L  N  Q  A  N  *  I  H  I  G  H  T  M  S   : W  L  Y  T  F  N  S  K  G  E  Q  Y  K  G  K  *  H  E  T  V  A  A  V  N  M </first_frame>
            <second_frame>  Q  *  I  F  P  E  R  I  A  R  S  L  *  I  F  L  G  G  R  *  D  L  K  S  Y  *  G  E  I  Q  L  Q  Q  *  R  D  S  W  Q  H  *  L  F  T  D  S  Q  K  F  *  Q  G  F  S  L  Y  H  E  K  I  G  V  Y  I  T  *  K  L  G  W  K  F  I  E  I  Y  A  F  Q  Q  I  V  C  L  Q  N  K  P  L  I  I  S  L  I  R  S  L  A  N  A  N  H  V  I  S  *  Q  E  K  F  I  C  *  I  V  W  S  *  I  K  P  I  K  F  I  L  G  T  Q  *  V  :  G  Y  I  L  L  I  A  K  E  N  N  I  R  E  N  N  M  R  Q  L  L  L  S  T   </second_frame>
            <third_frame>   S  R  F  F  R  K  G  S  P  G  A  C  E  S  F  *  V  E  G  E  T  *  S  P  I  K  E  K  S  N  S  S  S  E  E  I  P  G  N  T  S  F  L  Q  T  P  R  N  F  S  R  G  S  P  Y  I  M  K  K  L  E  Y  T  L  L  K  S  L  V  G  N  L  *  R  F  M  H  F  S  K  L  Y  A  C  K  I  N  P  *  L  Y  L  *  S  D  P  W  L  M  Q  I  M  *  Y  L  N  R  K  S  L  F  V  R  *  S  G  A  K  S  S  Q  L  N  S  Y  W  A  H  N  E  L :   V  I  Y  F  *  *  Q  R  R  T  I  *  G  K  I  T  *  D  S  C  C  C  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53127" PGL_stop="55452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53127" e_stop="53165"/>
            <exon e_start="54823" e_stop="55452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53127" e_stop="53165" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53166" i_stop="54822" i_length="1657"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="54823" e_stop="55452" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53127" stop="53165"/>
              <exon start="54823" stop="55452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAG : AAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAGGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAGGATTTTATGATGGGTCGATTTCT</gDNA_template>
            <first_frame> K  K  L  F  Q  V  K  I  I  Y  F  L  K  :  K  *  G  G  V  K  S  Y  H  G  G  Q  A  I  E  V  *  S  T  S  S  V  S  K  T  N  L  S  S  N  D  F  P  E  R  *  E  K  E  I  R  Q  F  L  S  H  Y  D  T  S  S  S  L  Q  I  R  T  E  L  R  I  S  R  K  A  R  S  C  S  F  P  L  G  T  D  P  R  K  A  K  G  *  E  *  T  T  N  S  F  H  G  E  T  S  Y  R  T  K  A  S  T  W  A  E  V  K  R  *  P  G  L  Q  S  N  R  K  I  S  N  C  H  A  E  L  H  F  F  R  *  K  C  K  E  D  *  E  F  *  Q  L  K  R  G  Y  A  R  *  G  K  D  Q  I  G  E  *  *  *  N  L  F  G  C  L  G  C  T  F  K  N  *  I  I  L  S  K  L  *  C  K  W  L  K  *  I  *  *  A  E  C  K  T  I  S  N  F  F  S  E  S  A  D  *  G  F  Y  D  G  S  I  S </first_frame>
            <second_frame>  K  N  C  F  K  S  R  S  S  I  F  *  R :   N  K  A  V  S  N  H  I  M  E  G  K  Q  L  K  F  N  Q  P  L  L  S  V  R  R  I  S  P  A  M  I  S  Q  R  D  E  K  K  K  F  D  N  S  F  P  T  M  T  H  P  P  H  Y  K  S  E  L  N  S  G  L  V  V  K  P  G  A  V  P  F  L  W  E  Q  T  P  G  R  P  K  D  E  S  R  P  Q  T  H  F  T  E  K  P  L  T  A  P  K  L  P  P  G  R  K  L  R  D  N  Q  D  Y  N  Q  T  G  K  Y  Q  T  A  M  L  S  C  T  S  S  D  E  N  V  K  K  I  E  S  F  D  S  S  K  E  V  M  H  D  K  E  K  I  K  S  E  N  D  D  E  T  Y  L  D  A  L  D  A  L  S  R  T  E  S  S  F  L  N  C  S  V  S  G  L  S  E  F  D  E  P  N  A  K  Q  S  R  T  S  S  A  N  P  Q  T  K  D  F  M  M  G  R  F   </second_frame>
            <third_frame>   K  T  V  S  S  Q  D  H  L  F  S  K   : E  I  R  R  C  Q  I  I  S  W  R  A  S  N  *  S  L  I  N  L  F  C  Q  *  D  E  S  L  Q  Q  *  F  P  R  E  M  R  K  R  N  S  T  I  P  F  P  L  *  H  I  L  L  I  T  N  Q  N  *  T  Q  D  *  S  *  S  Q  E  L  F  L  S  S  G  N  R  P  P  E  G  Q  R  M  R  V  D  H  K  L  I  S  R  R  N  L  L  P  H  Q  S  F  H  L  G  G  S  *  E  I  T  R  I  T  I  K  Q  E  N  I  K  L  P  C  *  V  A  L  L  Q  M  K  M  *  R  R  L  R  V  L  T  A  Q  K  R  L  C  T  I  R  K  R  S  N  R  R  M  M  M  K  P  I  W  M  P  W  M  H  F  Q  E  L  N  H  P  F  *  I  V  V  *  V  A  *  V  N  L  M  S  R  M  Q  N  N  L  E  L  L  Q  R  I  R  R  L  R  I  L  *  W  V  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53164" stop="53165"/>
                    <exon start="54823" stop="55450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKAVSNHIMEGKQLKFNQPLLSVRRISPAMISQRDEKKKFDNSFPTMTHPPHYKSELNSGLVVKPGAVPFLWEQTPGRPKDESRPQTHFTEKPLTAPKLPPGRKLRDNQDYNQTGKYQTAMLSCTSSDENVKKIESFDSSKEVMHDKEKIKSENDDETYLDALDALSRTESSFLNCSVSGLSEFDEPNAKQSRTSSANPQTKDFMMGRF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="56066" PGL_stop="56727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56066" e_stop="56727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56066" e_stop="56727" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56066" stop="56727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</gDNA_template>
            <first_frame> Q  D  L  F  N  L  C  Q  *  P  L  Q  *  Y  D  N  A  *  H  E  R  E  R  K  *  S  *  A  Q  V  L  V  *  S  E  Q  Y  Q  G  S  R  C  F  N  S  F  C  R  E  N  S  V  H  R  Y  C  A  *  N  G  F  I  S  *  D  I  M  F  S  R  *  K  T  I  Q  V  T  T  Q  G  R  *  D  T  *  T  D  D  K  T  K  T  I  F  R  F  F  T  L  F  V  *  D  F  I  K  A  I  C  S  K  E  S  *  L  Q  S  T  T  F  S  G  K  T  E  Q  *  K  R  D  E  S  M  D  I  Y  G  S  S  S  R  L  L  P  R  Y  N  D  L  S  K  V  *  Q  *  W  C  R  K  K  *  K  A  N  S  E  K  R  K  V  R  G  L  M  Q  S  A  P  R  V  S  C  S  T  T  F  T  E  I  S  I  R  F  M  A  L  P  H  F  A  F  F  I  H  K  E  C  I  F  T  G  L  Y  R  D  R  T  E  S  *   </first_frame>
            <second_frame>  R  T  Y  S  T  Y  A  N  D  P  Y  N  N  M  T  M  L  S  T  N  A  K  E  N  N  P  E  L  K  C  L  S  D  Q  N  N  I  R  E  V  D  V  L  T  P  F  V  E  K  T  L  Y  I  D  I  V  H  K  T  D  S  S  V  K  I  S  C  S  L  D  K  K  P  S  K  L  Q  H  K  D  V  E  I  L  E  Q  M  I  K  Q  K  P  F  L  D  S  S  L  Y  S  S  E  T  S  L  K  P  Y  V  Q  R  K  A  D  C  N  P  P  R  S  A  E  R  L  N  N  E  R  E  T  K  A  W  T  S  T  G  Q  A  R  D  C  Y  Q  D  T  T  T  L  A  K  S  D  S  D  G  V  E  K  N  R  K  P  I  P  R  R  E  K  L  E  D  S  C  K  V  H  P  E  F  L  A  P  P  P  L  P  K  S  P  S  D  S  W  L  C  R  T  L  P  S  L  S  T  K  N  A  S  S  R  A  Y  I  G  T  G  L  N  P  N  </second_frame>
            <third_frame>   G  P  I  Q  L  M  P  M  T  L  T  I  I  *  Q  C  L  A  R  T  R  K  K  I  I  L  S  S  S  A  C  L  I  R  T  I  S  G  K  *  M  F  *  L  L  L  *  R  K  L  C  T  *  I  L  C  I  K  R  I  H  Q  L  R  Y  H  V  L  *  I  K  N  H  P  S  Y  N  T  R  T  L  R  Y  L  N  R  *  *  N  K  N  H  F  *  I  L  H  F  I  R  L  R  L  H  *  S  H  M  F  K  G  K  L  T  A  I  H  H  V  Q  R  K  D  *  T  M  K  E  R  R  K  H  G  H  L  R  V  K  L  E  I  V  T  K  I  Q  R  P  *  Q  S  L  T  V  M  V  *  K  K  I  E  S  Q  F  R  E  E  K  S  *  R  T  H  A  K  C  T  Q  S  F  L  L  H  H  L  Y  R  N  L  H  Q  I  H  G  F  A  A  L  C  L  L  Y  P  Q  R  M  H  L  H  G  L  I  S  G  Q  D  *  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56067" stop="56726"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTYSTYANDPYNNMTMLSTNAKENNPELKCLSDQNNIREVDVLTPFVEKTLYIDIVHKTDSSVKISCSLDKKPSKLQHKDVEILEQMIKQKPFLDSSLYSSETSLKPYVQRKADCNPPRSAERLNNERETKAWTSTGQARDCYQDTTTLAKSDSDGVEKNRKPIPRREKLEDSCKVHPEFLAPPPLPKSPSDSWLCRTLPSLSTKNASSRAYIGTGLNPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="65247" PGL_stop="65688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65247" e_stop="65688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="65247" e_stop="65688" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65247" stop="65688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTT</gDNA_template>
            <first_frame> F  *  Q  T  C  Q  V  F  M  M  L  V  D  V  R  D  L  Q  G  Y  Y  S  L  T  A  L  L  T  F  L  L  H  A  V  M  G  I  H  L  W  I  K  C  F  H  H  C  L  T  E  N  G  W  H  P  *  V  K  L  K  A  P  E  A  R  L  N  *  A  L  L  T  Y  S  V  H  P  S  P  Y  R  Y  H  S  I  I  S  *  E  R  I  L  Q  V  L  T  T  F  S  W  W  K  A  L  K  H  F  S  V  V  G  I  Q  E  T  Q  L  L  R  W  T  S  W  *  I  L  A  L  N  L  V  V  K  C  P  H  K  I  F  R  V  T  F  F  V  V  L  </first_frame>
            <second_frame>  S  N  R  H  V  K  S  L  *  C  W  S  T  *  E  I  C  R  A  I  T  H  *  P  H  S  *  P  S  Y  S  M  L  S  W  G  F  T  C  G  S  N  V  F  I  I  A  S  Q  R  T  D  G  I  L  K  S  S  *  K  L  P  K  P  G  *  T  R  P  C  L  L  T  A  F  T  P  H  R  T  D  T  T  Q  *  F  P  K  R  G  Y  F  K  F  L  Q  L  S  A  G  G  K  R  *  S  I  S  P  W  L  E  F  K  R  L  N  F  S  D  G  R  V  G  E  F  *  H  *  T  *  W  *  N  V  H  T  R  F  S  E  *  P  S  L  W  F  F </second_frame>
            <third_frame>   L  T  D  M  S  S  L  Y  D  V  G  R  R  K  R  S  A  G  L  L  L  I  D  R  T  L  D  L  L  T  P  C  C  H  G  D  S  L  V  D  Q  M  F  S  S  L  P  H  R  E  R  M  A  S  L  S  Q  A  K  S  S  R  S  Q  V  K  L  G  P  A  Y  L  Q  R  S  P  L  T  V  Q  I  P  L  N  N  F  L  R  E  D  T  S  S  S  Y  N  F  Q  L  V  E  S  V  E  A  F  L  R  G  W  N  S  R  D  S  T  S  Q  M  D  E  L  V  N  F  S  T  K  P  S  G  E  M  S  T  Q  D  F  Q  S  D  L  L  C  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65249" stop="65686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDQMFSSLPHRERMASLSQAKSSRSQVKLGPAYLQRSPLTVQIPLNNFLREDTSSSYNFQLVESVEAFLRGWNSRDSTSQMDELVNFSTKPSGEMSTQDFQSDLLCGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="85546" PGL_stop="89546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85546" e_stop="85704"/>
            <exon e_start="87500" e_stop="87543"/>
            <exon e_start="88840" e_stop="88948"/>
            <exon e_start="89138" e_stop="89193"/>
            <exon e_start="89306" e_stop="89546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="0.987"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="0.977"/>
          <exon-intron don_prob="0.191" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="85546" e_stop="85704" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="85705" i_stop="87499" i_length="1795"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="87500" e_stop="87543" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87544" i_stop="88839" i_length="1296"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88948" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.191" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88949" i_stop="89137" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89138" e_stop="89193" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89194" i_stop="89305" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="89306" e_stop="89546" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85546" stop="85704"/>
              <exon start="87500" stop="87543"/>
              <exon start="88840" stop="88948"/>
              <exon start="89138" stop="89193"/>
              <exon start="89306" stop="89546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCACAACTGACCAAAAAAATCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGG : GGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGT : GGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATAT : GAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAG : GGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAA</gDNA_template>
            <first_frame> S  H  N  *  P  K  K  S  I  L  V  L  W  V  L  L  I  F  H  *  K  M  G  R  I  F  V  V  D  L  E  G  R  I  Y  K  C  K  F  C  Q  T  H  L  A  L  A  D  D  L  V  S  R  :  G  F  H  C  R  R  G  K  A  Y  L  F  N  K  V :   V  N  V  T  V  G  P  Q  E  E  R  A  M  L  S  G  M  H  T  V  A  D  I  F  C  C  C  C  G  Q  I  V  G  W  K  Y  :  E  A  A  H  E  E  S  Q  K  Y  K  E  K  K  F  V  L  E  R :   G  R  I  I  D  G  V  D  T  E  F  Y  I  D  S  R  P  T  I  S  D  T  E  D  A  *  A  L  L  C  D  V  S  I  *  T  C  V  V  V  V  S  C  K  S  S  L  *  I  *  G  R  S  C  L  Y  Q  N  I  V  W  L  *  L  V  S  P  V  C  *  T  L  V  Y  K  E  G  Y  T  * </first_frame>
            <second_frame>  L  T  T  D  Q  K  N  Q  F  L  F  C  G  F  C  *  F  S  I  E  K  W  E  G  Y  L  L  *  I  L  K  A  G  F  T  S  A  N  S  A  K  P  T  L  L  L  L  M  T  L  F  L  G :   D  F  I  A  A  E  E  K  P  T  C  S  I  K   : W  *  T  *  L  L  D  L  R  R  R  E  R  C  F  L  G  C  T  Q  *  Q  I  Y  F  V  A  V  A  G  K  L  L  A  G  N  M :   R  L  H  T  R  K  A  R  S  I  K  K  R  S  L  F  S  K   : G  V  G  S  L  T  E  L  T  L  N  S  T  S  I  L  V  Q  L  L  V  I  L  R  M  H  R  P  C  Y  V  M  Y  L  S  K  H  V  W  L  L  Y  L  V  S  L  V  C  R  Y  R  E  E  A  V  C  I  K  I  L  C  G  C  S  L  *  V  Q  F  A  R  R  *  Y  I  K  K  V  I  H   </second_frame>
            <third_frame>   S  Q  L  T  K  K  I  N  S  C  F  V  G  F  V  D  F  P  L  K  N  G  K  D  I  C  C  R  S  *  R  Q  D  L  Q  V  Q  I  L  P  N  P  P  C  S  C  *  *  P  C  F  *   : G  I  S  L  P  Q  R  K  S  L  L  V  Q  *  S  :  G  E  R  N  C  W  T  S  G  G  E  S  D  A  F  W  D  A  H  S  S  R  Y  I  L  L  L  L  R  A  N  C  W  L  E  I   : *  G  C  T  R  G  K  P  E  V  *  R  K  E  V  C  S  R  K  :  G  *  D  H  *  R  S  *  H  *  I  L  H  R  F  S  S  N  Y  *  *  Y  *  G  C  I  G  L  V  M  *  C  I  Y  L  N  M  C  G  C  C  I  L  *  V  *  F  V  D  I  G  K  K  L  F  V  S  K  Y  C  V  V  V  A  C  K  S  S  L  L  D  A  S  I  *  R  R  L  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85606" stop="85704"/>
                    <exon start="87500" stop="87543"/>
                    <exon start="88840" stop="88948"/>
                    <exon start="89138" stop="89193"/>
                    <exon start="89306" stop="89384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGRIFVVDLEGRIYKCKFCQTHLALADDLVSRGFHCRRGKAYLFNKVVNVTVGPQEERAMLSGMHTVADIFCCCCGQIVGWKYEAAHEESQKYKEKKFVLERGRIIDGVDTEFYIDSRPTISDTEDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88902" stop="88948"/>
                    <exon start="89138" stop="89193"/>
                    <exon start="89306" stop="89502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIYFVAVAGKLLAGNMRLHTRKARSIKKRSLFSKGVGSLTELTLNSTSILVQLLVILRMHRPCYVMYLSKHVWLLYLVSLVCRYREEAVCIKILCGCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="92391" PGL_stop="93751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92391" e_stop="92852"/>
            <exon e_start="93500" e_stop="93644"/>
            <exon e_start="93740" e_stop="93751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.493" e_score="0.959"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92391" e_stop="92852" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="93500" e_stop="93644" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.493">
            <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="93740" e_stop="93751" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93644"/>
              <exon start="93740" stop="93751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT : GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCG : CATTCTACCAGT</gDNA_template>
            <first_frame> K  N  G  V  L  S  *  P  V  I  S  E  C  T  R  T  R  I  R  I  L  A  P  R  Y  W  L  P  R  N  S  R  S  T  D  H  R  S  P  P  P  L  L  H  H  H  R  G  G  D  D  C  F  L  R  R  C  C  Y  *  F  C  C  S  R  G  V  N  F  K  W  S  L  R  S  N  I  F  T  Y  W  N  L  I  I  A  F  N  A  *  S  V  C  K  T  H  I  *  *  L  F  R  *  Y  P  V  V  D  P  P  I  R  R  V  I  R  F  L  L  I  S  F  V  A  V  S  G  S  A  *  S  T  R  E  C  E  T  L  C  S  E  L  C  L  P  L  C  P  L  L  C  L  L  S  :  V  P  K  A  V  C  P  C  W  V  D  I  M  F  G  T  L  G  C  I  K  V  M  W  R  S  L  G  I  R  A  P  P  S  Y  Q  T  K  L  D  S  H  C  S  V  W  *  V   : A  F  Y  Q  </first_frame>
            <second_frame>  K  M  A  F  S  A  N  P  L  S  L  S  V  P  E  P  V  F  E  S  W  L  R  D  T  G  Y  L  E  I  L  D  Q  R  T  T  D  L  H  R  H  S  S  T  T  T  V  A  A  T  T  A  S  S  D  A  A  V  T  N  S  A  A  A  A  V  S  I  S  N  G  V  F  V  L  I  F  S  R  I  G  T  L  L  S  L  L  T  L  N  P  F  A  K  L  T  S  D  D  F  S  G  D  T  P  S  W  T  L  Q  F  V  G  S  F  D  S  Y  S  F  P  S  S  P  S  Q  A  R  L  R  V  H  E  N  V  K  R  Y  A  R  N  Y  A  S  L  F  V  L  F  F  A  C  S  L :   Y  Q  K  L  F  A  L  V  G  L  I  S  C  L  A  L  W  D  V  L  K  L  C  G  D  R  W  G  L  E  H  R  P  V  I  K  Q  S  L  I  R  I  A  Q  C  G  E  S  :  H  S  T  S </second_frame>
            <third_frame>   K  W  R  S  Q  L  T  R  Y  L  *  V  Y  P  N  P  Y  S  N  P  G  S  E  I  L  A  T  S  K  F  S  I  N  G  P  P  I  S  T  A  T  P  P  P  P  P  W  R  R  R  L  L  P  P  T  L  L  L  L  I  L  L  Q  P  R  C  Q  F  Q  M  E  S  S  F  *  Y  F  H  V  L  E  P  Y  Y  R  F  *  R  L  I  R  L  Q  N  S  H  L  M  T  F  P  V  I  P  R  R  G  P  S  N  S  S  G  H  S  I  P  T  H  F  L  R  R  R  L  R  L  G  L  E  Y  T  R  M  *  N  A  M  L  G  I  M  P  P  S  L  S  S  S  L  L  A  L   : C  T  K  S  C  L  P  L  L  G  *  Y  H  V  W  H  F  G  M  Y  *  S  Y  V  E  I  A  G  D  *  S  T  A  Q  L  S  N  K  A  *  F  A  L  L  S  V  V  S  R :   I  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92392" stop="92852"/>
                    <exon start="93500" stop="93644"/>
                    <exon start="93740" stop="93751"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAFSANPLSLSVPEPVFESWLRDTGYLEILDQRTTDLHRHSSTTTVAATTASSDAAVTNSAAAAVSISNGVFVLIFSRIGTLLSLLTLNPFAKLTSDDFSGDTPSWTLQFVGSFDSYSFPSSPSQARLRVHENVKRYARNYASLFVLFFACSLYQKLFALVGLISCLALWDVLKLCGDRWGLEHRPVIKQSLIRIAQCGESHSTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="102852" PGL_stop="99431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102852" e_stop="101754"/>
            <exon e_start="99455" e_stop="99431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.619" e_score="0.980"/>
          <exon-only e_score="0.520"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="102852" e_stop="101754" e_length="1099"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.619">
            <gDNA_intron_boundary i_start="101753" i_stop="99456" i_length="2298"/>
          </intron>
          <exon e_serial="2" e_score="0.520">
            <gDNA_exon_boundary e_start="99455" e_stop="99431" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102852" stop="102239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102334" stop="101754"/>
              <exon start="99455" stop="99431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324267" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTCTAAGACAACCACAACAAAAACTCTCTCAAAATCCTCAAAACAACCCCTTTTCTCTTTAAAATTATCTTTTAAAAGATTGTAATAAAGATTTCAGTTCTTTATTCTAAAAGTTTGTTTTAAGTAAAAGTTTGGAAGCTTTTCGGGTTTTCCGAAAGGGAAACTTCACTCTGTTCTAAATAATGTAAGTTTTCATATTTATGTTTCTAGTAAACTTCCCATATATGTAAATTATGTGTGTTTATAAAATGTTAATTATTTGATAAATTCATGTAAATTTATGAATATCATCATGAATCTATATTACTTAGTATATGGTTAGTCTCTTAGCTTCTTAAAAGTATCGATGGATTAACCTGTAAATTCCTAGGACATTGTCAGGTTAAATGTTCTGAGAAAAAAACTATGAATAACCAAATCCGGGGTGTGGTTAAAGAAGATTACTTTTAAGAACAAAGGCTAAGAGAAAGAGATGTACAATAATAATAGATAGATTCATGAATGGACAGAGTCCATAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACATATTAAT : GAAAAATAAGTTTGTTTGTTTTTTT</gDNA_template>
            <first_frame> K  S  L  R  Q  P  Q  Q  K  L  S  Q  N  P  Q  N  N  P  F  S  L  *  N  Y  L  L  K  D  C  N  K  D  F  S  S  L  F  *  K  F  V  L  S  K  S  L  E  A  F  R  V  F  R  K  G  N  F  T  L  F  *  I  M  *  V  F  I  F  M  F  L  V  N  F  P  Y  M  *  I  M  C  V  Y  K  M  L  I  I  *  *  I  H  V  N  L  *  I  S  S  *  I  Y  I  T  *  Y  M  V  S  L  L  A  S  *  K  Y  R  W  I  N  L  *  I  P  R  T  L  S  G  *  M  F  *  E  K  N  Y  E  *  P  N  P  G  C  G  *  R  R  L  L  L  R  T  K  A  K  R  K  R  C  T  I  I  I  D  R  F  M  N  G  Q  S  P  *  K  K  R  E  V  E  T  R  N  *  Y  D  N  Y  S  E  G  V  L  S  R  I  V  Q  Y  *  R  F  N  E  F  I  E  P  Y  I  K  K  N  N  L  S  K  H  Q  H  *  R  F  N  E  F  I  E  P  Y  I  E  K  T  N  L  S  K  H  Q  P  I  F  F  *  K  T  H  R  N  L  G  F  R  V  F  Q  I  L  L  F  V  I  V  H  K  I  V  W  H  L  K  R  L  F  T  T  L  E  L  *  S  W  K  N  Y  *  K  T  H  L  I  F  L  L  F  L  I  F  H  F  I  F  E  N  L  *  Y  F  L  F  L  *  C  I  R  A  S  I  Y  C  N  *  I  T  Y  Y  V  F  D  L  F  Y  L  V  H  F  I  M  Y  S  S  Y  I  L  C  I  *  F  I  L  *  C  I  R  D  T  L  *  C  I  *  A  T  Y  *   : *  K  I  S  L  F  V  F   </first_frame>
            <second_frame>  K  V  *  D  N  H  N  K  N  S  L  K  I  L  K  T  T  P  F  L  F  K  I  I  F  *  K  I  V  I  K  I  S  V  L  Y  S  K  S  L  F  *  V  K  V  W  K  L  F  G  F  S  E  R  E  T  S  L  C  S  K  *  C  K  F  S  Y  L  C  F  *  *  T  S  H  I  C  K  L  C  V  F  I  K  C  *  L  F  D  K  F  M  *  I  Y  E  Y  H  H  E  S  I  L  L  S  I  W  L  V  S  *  L  L  K  S  I  D  G  L  T  C  K  F  L  G  H  C  Q  V  K  C  S  E  K  K  T  M  N  N  Q  I  R  G  V  V  K  E  D  Y  F  *  E  Q  R  L  R  E  R  D  V  Q  *  *  *  I  D  S  *  M  D  R  V  H  K  K  K  G  K  L  K  L  E  T  N  M  I  I  I  V  K  E  Y  *  V  G  L  Y  N  I  K  G  L  T  N  L  L  N  H  I  L  K  K  I  I  Y  R  N  I  N  I  K  G  L  T  N  L  L  N  H  I  L  K  K  P  I  Y  R  N  I  N  L  F  F  F  R  R  P  T  G  I  *  A  F  E  F  F  K  F  F  C  L  S  *  S  T  K  L  F  G  I  *  K  G  C  S  Q  H  W  N  Y  D  H  G  K  T  T  K  K  H  I  *  Y  F  Y  Y  F  *  Y  F  I  L  F  L  K  I  F  N  T  S  Y  F  F  N  V  F  E  P  V  F  T  V  I  E  L  H  I  M  Y  L  I  Y  F  I  W  S  I  L  *  C  I  R  A  T  Y  Y  V  F  N  L  Y  Y  N  V  F  E  I  L  F  N  V  S  E  L  H  I  N  :  E  K  *  V  C  L  F  F  </second_frame>
            <third_frame>   K  S  K  T  T  T  T  K  T  L  S  K  S  S  K  Q  P  L  F  S  L  K  L  S  F  K  R  L  *  *  R  F  Q  F  F  I  L  K  V  C  F  K  *  K  F  G  S  F  S  G  F  P  K  G  K  L  H  S  V  L  N  N  V  S  F  H  I  Y  V  S  S  K  L  P  I  Y  V  N  Y  V  C  L  *  N  V  N  Y  L  I  N  S  C  K  F  M  N  I  I  M  N  L  Y  Y  L  V  Y  G  *  S  L  S  F  L  K  V  S  M  D  *  P  V  N  S  *  D  I  V  R  L  N  V  L  R  K  K  L  *  I  T  K  S  G  V  W  L  K  K  I  T  F  K  N  K  G  *  E  K  E  M  Y  N  N  N  R  *  I  H  E  W  T  E  S  I  K  K  K  G  S  *  N  *  K  L  I  *  *  L  *  *  R  S  T  E  *  D  C  T  I  L  K  V  *  R  I  Y  *  T  I  Y  *  K  K  *  F  I  E  T  S  T  L  K  V  *  R  I  Y  *  T  I  Y  *  K  N  Q  F  I  E  T  S  T  Y  F  F  L  E  D  P  P  E  F  R  L  S  S  F  S  N  S  F  V  C  H  S  P  Q  N  C  L  A  F  E  K  V  V  H  N  I  G  T  M  I  M  E  K  L  L  K  N  T  S  N  I  F  I  I  F  N  I  S  F  Y  F  *  K  S  L  I  L  L  I  S  L  M  Y  S  S  Q  Y  L  L  *  L  N  Y  I  L  C  I  *  F  I  L  S  G  P  F  Y  N  V  F  E  L  H  I  M  Y  L  I  Y  I  I  M  Y  S  R  Y  S  L  M  Y  L  S  Y  I  L  M :   K  N  K  F  V  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102157" stop="101942"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQFIETSTYFFLEDPPEFRLSSFSNSFVCHSPQNCLAFEKVVHNIGTMIMEKLLKNTSNIFIIFNISFYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="100553" PGL_stop="100950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100553" e_stop="100950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="100553" e_stop="100950" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100553" stop="100950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</gDNA_template>
            <first_frame> E  V  L  V  P  M  S  M  L  F  L  F  L  F  H  E  A  P  K  R  K  T  K  S  Q  R  R  S  K  T  *  S  Q  S  *  R  S  K  T  *  R  *  E  G  R  R  R  K  T  K  R  E  R  R  K  Q  A  T  M  K  E  E  A  M  R  *  C  N  Y  I  L  C  S  Y  K  *  Y  C  S  S  F  T  S  S  L  K  Y  L  L  C  A  I  A  I  F  N  S  F  E  K  N  L  I  L  N  V  F  L  *  K  K  Y  L  H  F  I  H  Y  D  D  E  M  H  T  *  *  S  L  L  T  I  F   </first_frame>
            <second_frame>  K  F  L  F  Q  C  P  C  C  S  C  F  C  F  M  K  P  Q  K  G  K  P  K  A  K  E  E  A  K  P  K  A  K  V  E  E  A  K  P  K  D  K  K  V  E  E  E  K  P  K  E  K  E  E  S  K  P  Q  *  K  K  R  Q  *  D  N  A  T  I  Y  Y  A  H  T  S  N  I  V  L  H  L  L  L  V  *  N  I  Y  C  V  L  L  Q  S  L  T  L  L  R  K  T  S  S  *  M  Y  S  Y  K  K  N  I  C  T  L  F  T  M  M  M  K  C  I  P  S  S  H  Y  *  L  Y  L  </second_frame>
            <third_frame>   S  S  C  S  N  V  H  V  V  L  V  F  V  S  *  S  P  K  K  E  N  Q  K  P  K  K  K  Q  N  L  K  P  K  L  K  K  Q  N  L  K  I  R  R  *  K  K  K  N  Q  K  R  K  K  K  A  S  H  N  E  R  R  G  N  E  I  M  Q  L  Y  I  M  L  I  Q  V  I  L  F  F  I  Y  F  *  F  K  I  F  I  V  C  Y  C  N  L  *  L  F  *  E  K  P  H  P  K  C  I  L  I  K  K  I  F  A  L  Y  S  L  *  *  *  N  A  Y  L  V  V  I  I  N  Y  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="109965" PGL_stop="109383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109965" e_stop="109383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109965" e_stop="109383" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109965" stop="109383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</gDNA_template>
            <first_frame> Y  F  G  V  P  M  A  T  W  P  M  Y  A  E  Q  Q  A  N  A  F  Q  L  V  K  D  L  E  M  A  V  E  L  K  M  D  Y  R  K  E  P  T  G  K  M  G  Q  K  V  I  V  K  A  E  E  I  E  K  A  I  R  E  L  M  D  P  E  N  K  I  R  M  K  V  K  E  M  K  E  K  S  R  A  A  T  T  E  G  G  S  S  Y  T  S  I  G  S  F  I  Q  S  I  M  E  N  T  P  *  L  A  A  L  I  C  F  S  L  N  L  G  S  I  R  N  N  L  S  T  S  R  R  *  K  *  G  L  H  T  V  Y  S  P  L  T  H  L  W  I  T  W  S  M  L  L  L  L  L  *  F  D  R  Y  S  W  L  C  T  L  V  S  K  L  L  A  K  V  A  R  A  E  H  D  Q  D  C  I  S  C  Y  N  I  F  F  *  L  </first_frame>
            <second_frame>  I  L  E  C  Q  W  L  L  G  Q  C  T  Q  S  S  K  Q  M  H  F  S  W  L  R  I  W  K  W  Q  S  S  *  R  W  I  T  G  R  N  Q  Q  G  R  W  A  K  K  L  *  *  K  Q  R  R  L  R  K  Q  *  E  N  L  W  T  L  K  I  K  F  G  *  K  *  R  R  *  K  R  R  A  E  Q  Q  P  R  K  E  A  L  L  T  L  L  L  E  V  S  S  R  V  S  W  R  I  L  H  D  *  L  L  *  Y  V  F  P  *  T  *  G  L  S  E  T  T  S  L  P  L  E  G  R  S  K  V  C  I  Q  F  T  L  P  *  P  T  C  G  L  R  G  V  C  C  C  C  C  C  N  L  I  D  I  V  G  Y  V  P  S  F  L  S  Y  *  Q  R  L  P  V  L  S  T  T  K  I  V  L  V  V  I  I  S  F  F  S  * </second_frame>
            <third_frame>   F  W  S  A  N  G  Y  L  A  N  V  R  R  A  A  S  K  C  I  S  V  G  *  G  F  G  N  G  S  R  A  K  D  G  L  Q  E  G  T  N  R  E  D  G  P  K  S  Y  S  E  S  R  G  D  *  E  S  N  K  R  T  Y  G  P  *  K  *  N  S  D  E  S  E  G  D  E  R  E  E  Q  S  S  N  H  G  R  R  L  F  L  H  F  Y  W  K  F  H  P  E  Y  H  G  E  Y  S  M  I  S  C  F  D  M  F  F  L  E  P  R  V  Y  Q  K  Q  P  L  Y  L  *  K  V  E  V  R  F  A  Y  S  L  L  S  P  D  P  L  V  D  Y  V  E  Y  V  V  V  V  V  V  I  *  S  I  *  L  V  M  Y  P  R  F  *  V  T  S  K  G  C  P  C  *  A  R  P  R  L  Y  *  L  L  *  Y  L  F  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109965" stop="109645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFGVPMATWPMYAEQQANAFQLVKDLEMAVELKMDYRKEPTGKMGQKVIVKAEEIEKAIRELMDPENKIRMKVKEMKEKSRAATTEGGSSYTSIGSFIQSIMENTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="112322" PGL_stop="110690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112322" e_stop="111904"/>
            <exon e_start="111245" e_stop="110690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112322" e_stop="111904" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111245" e_stop="110690" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111904"/>
              <exon start="111245" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG : GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R :   Y  R  H  R  L  I  L  H  L  H  D  R  G  G  Q  *  I  R  A  T  S  L  C  F  L  H  L  W  S  S  S  S  W  T  S  V  P  Y  T  E  P  Y  *  *  L  W  K  R  Y  Y  *  L  Q  R  *  T  *  S  R  T  F  Y  T  N  I  F  Q  S  I  S  C  K  M  F  A  L  C  R  V  R  Q  G  R  R  F  R  H  V  S  *  P  Y  K  K  V  *  R  N  Q  R  Y  N  D  *  Y  L  S  *  T  G  F  S  R  D  K  L  P  L  T  R  Q  E  Y  T  T  G  L  P  C  G  T  C  I  E  P  *  *  C  S  R  *  Q  L  E  F  I  R  P  E  Y  D  E  M  V  R  *  S  T  H  F  I  C  S  V  P  L  F  W  *  R  R  K  F  Y  D  R  A  S  *  G  N  I  I  C  S </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A   : G  I  V  I  D  L  F  C  T  S  M  I  E  V  A  N  E  F  E  L  P  A  Y  V  F  Y  T  C  G  A  A  P  L  G  L  Q  F  H  I  Q  S  L  T  D  D  F  G  R  D  I  T  N  Y  K  D  E  P  E  A  E  L  S  I  P  T  Y  F  N  P  F  P  A  K  C  L  P  S  V  A  L  D  K  E  G  G  S  A  M  F  L  D  L  T  R  R  F  R  E  T  K  G  I  M  I  N  T  F  L  E  L  D  S  H  A  I  N  F  L  S  Q  D  K  N  I  P  P  V  Y  P  V  G  P  V  L  N  L  N  N  V  Q  G  D  N  L  S  L  S  D  Q  N  M  M  K  W  L  D  D  Q  P  T  S  S  V  V  F  L  C  F  G  S  G  G  S  F  T  I  E  Q  V  K  E  I  S  Y  A   </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  :  V  S  S  S  T  Y  F  A  P  P  *  *  R  W  P  M  N  S  S  Y  Q  P  M  F  S  T  P  V  E  Q  L  L  L  D  F  S  S  I  Y  R  A  L  L  M  T  L  E  E  I  L  L  I  T  K  M  N  L  K  Q  N  F  L  Y  Q  H  I  S  I  H  F  L  Q  N  V  C  P  L  S  R  *  T  R  K  E  V  P  P  C  F  L  T  L  Q  E  G  L  E  K  P  K  V  *  *  L  I  P  F  L  N  W  I  L  T  R  *  T  S  S  H  K  T  R  I  Y  H  R  F  T  L  W  D  L  Y  *  T  L  I  M  F  K  V  T  T  *  V  Y  Q  T  R  I  *  *  N  G  *  M  I  N  P  L  H  L  *  C  S  S  V  L  V  A  E  E  V  L  R  *  S  K  L  R  K  Y  H  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112297" stop="111904"/>
                    <exon start="111245" stop="110692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGIVIDLFCTSMIEVANEFELPAYVFYTCGAAPLGLQFHIQSLTDDFGRDITNYKDEPEAELSIPTYFNPFPAKCLPSVALDKEGGSAMFLDLTRRFRETKGIMINTFLELDSHAINFLSQDKNIPPVYPVGPVLNLNNVQGDNLSLSDQNMMKWLDDQPTSSVVFLCFGSGGSFTIEQVKEISYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112019" e_stop="111363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112019" e_stop="111363" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112019" stop="111363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</gDNA_template>
            <first_frame> C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R  Y  V  F  Q  I  N  F  M  C  P  R  L  *  Y  S  N  K  V  C  C  L  D  S  L  K  M  L  M  D  M  C  V  G  Y  C  K  S  S  V  H  N  F  G  E  I  E  H  T  T  C  D  L  *  I  R  C  M  S  S  L  S  *  I  W  L  L  L  Q  K  Q  K  D  W  Y  F  L  P  S  Q  L  Y  D  T  F  K  H  F  E  R  Q  I  V  F  L  K  A  *  Y  A  F  S  S  I  K  N  Y  *  L  L  *  L  I  V  C  F  K  Y  K  F  Y  L  Q  K  L  K  D  Y  M  P  E  F  M  V  K  I  *  K  F  G  S  R  N  P  N  D  V  A  *  P  G  E  Y  F  K  L  K  G  V  L  H  Y  Y  T  N  L  L  N  L  T  R  L  E  N  V  F  Q  *  L  Y  C </first_frame>
            <second_frame>  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A  G  M  Y  F  K  L  T  L  C  V  Q  G  F  D  T  V  T  R  Y  V  A  W  T  L  *  K  C  *  W  I  C  V  S  D  T  A  K  V  V  Y  I  I  L  E  R  L  N  I  Q  L  V  I  Y  R  L  D  A  C  H  H  C  H  E  F  G  C  Y  Y  K  N  K  K  I  G  T  S  F  P  P  N  F  M  I  L  L  S  I  S  R  D  K  *  F  F  S  K  H  D  M  P  F  Q  V  L  K  I  I  N  Y  C  D  L  *  Y  V  S  N  I  N  F  I  Y  K  S  L  K  I  I  C  P  N  S  W  S  K  F  K  S  L  A  L  E  I  Q  M  M  S  H  D  R  G  S  I  L  S  *  K  G  C  C  T  T  T  P  T  F  S  I  *  R  D  *  K  M  Y  F  N  D  F  I   </second_frame>
            <third_frame>   F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  V  C  I  S  N  *  L  Y  V  S  K  A  L  I  Q  *  Q  G  M  L  L  G  L  F  K  N  V  D  G  Y  V  C  R  I  L  Q  K  *  C  T  *  F  W  R  D  *  T  Y  N  L  *  F  I  D  *  M  H  V  I  I  V  M  N  L  A  A  T  T  K  T  K  R  L  V  L  P  S  L  P  T  L  *  Y  F  *  A  F  R  E  T  N  S  F  S  Q  S  M  I  C  L  F  K  Y  *  K  L  L  I  I  V  T  Y  S  M  F  Q  I  *  I  L  F  T  K  A  *  R  L  Y  A  R  I  H  G  Q  N  L  K  V  W  L  S  K  S  K  *  C  R  M  T  G  G  V  F  *  V  E  R  G  V  A  L  L  H  Q  P  S  Q  F  N  A  T  R  K  C  I  S  M  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 130304 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 8144 bytes was the average size of a spliced alignment
$ 19280 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1606 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 11:27:18
-->
