<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 11:24:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352443" ref_strand="+" ref_description="SGN-E352443 [cTOS-9-N18]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="810" stop="1831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1110" g_stop="1531" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1665" g_stop="1671" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E352443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1110" e_stop="1531"/>
          <exon e_start="1665" e_stop="1671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTCTTTCGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTAAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354213" ref_strand="+" ref_description="SGN-E354213 [cTOS-16-C10]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="810" stop="1831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1110" g_stop="1531" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1665" g_stop="1671" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E354213" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1110" e_stop="1531"/>
          <exon e_start="1665" e_stop="1671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTCTTTCGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTAAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354892" ref_strand="+" ref_description="SGN-E354892 [cTOS-19-N22]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="810" stop="1831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1110" g_stop="1531" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1665" g_stop="1671" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E354892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1110" e_stop="1531"/>
          <exon e_start="1665" e_stop="1671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTCTTTCGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTAAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368852" ref_strand="+" ref_description="SGN-E368852 [TUS-26-C15](-)">
      <seq>caaaaacagtaaaaaaaaagctaaacgagggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagagaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10005" stop="7310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9719" g_stop="9637" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="171" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="218" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7942" g_stop="7610" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="551" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E368852" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9719" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAAGCAGTGAAAGAAGCTAAGCGA-GGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</genome_strand>
        <mrna_strand>CAAAAACAGTAA-AAAAAAAGCTAAACGAGGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263299" ref_strand="+" ref_description="SGN-E263299 [cLEG-62-A8]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14386" stop="7317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14086" g_stop="14023" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7942" g_stop="7617" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="734" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E263299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14086" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261020" ref_strand="+" ref_description="SGN-E261020 [cLEG-55-K16]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaattcactactgttgcttcacatttttattgttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14386" stop="7322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14086" g_stop="14023" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7942" g_stop="7622" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="728" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E261020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14086" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGT</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTC-AAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606730" ref_strand="+" ref_description="SGN-E606730 [22679]">
      <seq>gtttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatctgagtagaagatcaaattttattgacttgataccctctcttaatacatccaattttaacttggtactttgttgtactcgtttgtttaaatttcttcattttcccacattagtaaagggtgtttcctagttatttttgtttcttcccctttattgtaatgatctttccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9826" stop="7391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9527" g_stop="9445" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="130" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7942" g_stop="7689" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="386" r_length="256" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E606730" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9527" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTA---ACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAG</genome_strand>
        <mrna_strand>GTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATCTGAGTAGAAGATCAAATTTTATTGACTTGATACCCTCTCTTAATACATCCAATTTTAACTTGGTACTTTGTTGTACTCGTTTGTTTAAATTTCTTCATTTTCCCACATTAG-TAAAGGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTATTGTAATGATCTTTCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368853" ref_strand="+" ref_description="SGN-E368853 [TUS-26-C15]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccattatttcctgttacaattacagtcgttatcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14386" stop="7600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14086" g_stop="14023" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7942" g_stop="7900" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="452" r_length="44" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E368853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14086" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
          <exon e_start="7942" e_stop="7900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAA-TACAGTCGTTATCGATTG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATTATTTCCTGTTACAATTACAGTCGTTATCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256664" ref_strand="+" ref_description="SGN-E256664 [cLEG-40-M9]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaacaggggaaatgtgaagattgattgtgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtatgaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14386" stop="8825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14086" g_stop="14023" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9171" g_stop="9125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E256664" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14086" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAACAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTGTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTATGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259000" ref_strand="+" ref_description="SGN-E259000 [cLEG-41-A1]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14386" stop="8844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14086" g_stop="14023" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9741" g_stop="9637" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9532" g_stop="9445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9171" g_stop="9144" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="389" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E259000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14086" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9637"/>
          <exon e_start="9532" e_stop="9445"/>
          <exon e_start="9171" e_stop="9144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATAC</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256958" ref_strand="+" ref_description="SGN-E256958 [cLEG-44-H17]">
      <seq>aaaaaagctgtttatgatcttaaagaggccattcggcttgtaaaggctaatgccaagaagaaatttgatgaaactctggaagctcatgttgttttgactcctgatatgcgtcgaagtgatctgaaacttgaaggtacagtggctgttcctcatgggtttggaaaggtatatcggattgctgtttttgctgaaggagctgctgctgatgaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaancgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17462" stop="9351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17162" g_stop="17118" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17117" i_stop="15012" i_length="2106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15011" g_stop="14934" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14933" i_stop="14257" i_length="677">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14256" g_stop="14215" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="165" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14214" i_stop="14129" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14128" g_stop="14023" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11415" g_stop="11351" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9857" g_stop="9819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="375" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9741" g_stop="9651" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="466" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E256958" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17162" e_stop="17118"/>
          <exon e_start="15011" e_stop="14934"/>
          <exon e_start="14256" e_stop="14215"/>
          <exon e_start="14128" e_stop="14023"/>
          <exon e_start="11415" e_stop="11351"/>
          <exon e_start="9857" e_stop="9819"/>
          <exon e_start="9741" e_stop="9651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAGGTCAGATTTTTTTGTTTCAATCAACTGTGTATTGTTTTGTTGGAGTTTCTGTTCTGTTATTAGCTGCTGCTTTTTGTACTTCTGGTAATTATATCGCTAGACTGCTTTGGACTGTTTTTCTTGAGCTGAGTGTCTGTATGAAACAACCTCTCTGAGGTAAGAGTTACTTATGTGAGGTAGGAGTAGTAAGGTTATATGAATTCTTTTTAGCATTTGTTGTTTCTTATACAAAATTTTGACTCCTTGTAAAGTTAAAAGGCAGTAGTAATTGGATAATATATTGAAAAAAAGAAGAAAAAAACAATAACAGGATGCCTATTATTAGTTTAAATGAAAAAGAAGAGGAGAAAACAATTAAAGGATTCCCATTAAAGGGGCCATTTGGCTTGTAAAGGTTACATTTTTTGTTTCAATCAACTGTGTGTAGAGATCCCAAATTAGTTGAGGTTGTTTATATGAATTCTTTTTTAGCATTTGCTGTTTCTTGTACGAAATTTTGACTCGTTATAAAGTTGTAAATAATAGTAATAATATAAGAAAACAATCACAGGATGTGTTTCTGCTGGATTTCTAAATGTAGTAAAGAATATCTGGAATATTATTATTTCATCGTCATACTTGCATGTCTGATAATTTTGTTTCAAGTGGACAGTGAAATTTCAAGGTAGCCCTAAAATAGGGAGTTGAGGAAAGAATAAAAGTAAGAACTGAAGAAAAACACTTCTAGCAGTTTACTTAGGTTTCATATGGATAACCTTCTCGTAAGTTACATTGTATCCTTCAAGGTCAAAAAAAGATCATACTTGAATAACCTTGTTGTGATACTCACTATTTGCTTACATTACTAATTTGGAGTCGATATGGTATCCTAGTGAACATCGATGATTGGGTGCCCGCCATAGTTTATCATGTTTTGATGTAAAAATCTGTCTTTTGGTCTAGAGTCTGTAAATGTGGTTTTCTTCAGCATATTGATGAAAAATTAACTTCATAGAATGCATTATTGCATTGTTAATTATTTGGAGCACCTTGTTGGTATGTCCTACATCCTCAATTGGATATCAATGATTTACTATAGGAATGGTCCAATATATTCTCTAGGTTGAAGACTATTTTTTAATAATGAGAATACTTGTATAACCTCCTTCCATAAGGAGCTGCTGTCACATGCTAAAGTAAAGTGCATCTAAGGATATTTTGGATAGCTTCCATATATCTCTAGATAAGTTAATGGTCAAGGTATTTCTAGACACTCTTTTTTGATAATAATGATGGCGGAGCCTGTTTGCCTGCGCCTCAACTGTTCCACCATGTAGCTGCATCCTTTCACTAATACAAGTACCATATAACTCCATTATTCATTAAGGTATTTCATCAACATTTCAGCAGATAGAAAGGAATCATCTTGTTTTTTGACAATGCTACATTCAGACAGTTGTCTTCCATTAATTACTAGGCCACCCTCTAGCGTCGTATTTCTAGATAATTTTTTGTTTTTTTTTGGCTTTGCTTTCTTTAGGATAGTTATGGTGTCAGAACCTGCTAATCCGTCGTTACCTATTACTTTTCATTAGTATTGGGTAACTCTATCCACCAACACTTAGGCTAGTGTAAAAATCCACGTGATGTTGTCTCTTGGTTCCCAAGGTTGTCACTTCATCTCTTCAACTGTTAGGCTTTTTCCTTGAGAAGTCGCAAGTGTTTATAGATAATATCATAGTGAAAGAGACAAGTTCAACTTTTCCATCAATTAGGGGTAGTCATATGCATGGCTCAAAAATTCAACTCTTATTTTTCCTCAGAATCTCATTATATTTTTTTATTCATCTATTCAAGTTGAAAATAGTGATTATGGATCAAAGTCCATATTATGTAATCTGAGTGACGCTTAAGCATAGCTTGCCTGAGATAGTTTGCTTGTCTGCTTTTTGCATGGTGCTTTGTCATTCTATCTATAGTATATAATTAAGTGACTCTTAGCTGTAGCTCGCCATTAATTGGTTTTCTTGTGTGCTTCTCATGGGGCTTTGTCTTTCTTTCTACTCGTGTTTTCTTCAGAGGTTACAGACTGAGCCATGATTCATTGTATTTTTAGTGATTATGCAGGCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTGGTGCGTGCTTTCGTCCTCTTTCTGGCCCACATTAAGTTTACTATCTGAGCTTGTCGTCACTCGTCACGTGATACTTGAACAGAAAGACTTCTTGTTACCACTTCTGTTGTTATTGGTTTATATGTCTAAGTTTATTCATCAGATGGTGAATGGATATCAAATAATTGTGCTTAGAAATAGCTCATAAATCACGAGAGCATCGAGGGGCTTAAACCTTTCAAACCTAAATCTCAATTCTTGAACATTTGGAAGCACTCAGAATTTGCTCTGCATGTAGTCTTGTAGATTTTGCAATTGACAGAAAATTCATTTATATTTAAAACAAATCTCCAACATTCTAGATATACTTATCATGGTTTGGTTAGGGGTTTGCTGATTCCACATCCTTTTGTTGTTCGTGAGTGTATGGAGCAGATTTTATGGTAGAATCATGCTCCTAATGCCACCTAATTAAGAGTGAATTTTCCTTTCCTTTGCTGGAATATTGTTCGTGCAAGCCTCTAGAAATATAAATTCTCTTGTACAGGTGGTATAAGCAGAGTGAGATTACAAACATGTTTCATTACCAATTCTTCCGTTTTGATTGACCTCTTCTAGTGTAGCTAATTTGACCCTAGTATAAAGCAATCTCATTCGTTTGCTAGTGCTAGCTCATAGTTCTTTCTTTTGTACTGCAGAAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAGGTATTAGTGCATTCTTCATAAAGTTTAAGGTTAGATAATCATATGCTGTTGTAGATATACTGTTTGACTAAATATTTTCCTTTCAGGTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATG</genome_strand>
        <mrna_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG......................................................................................GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAANCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262858" ref_strand="+" ref_description="SGN-E262858 [cLEG-59-C14]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaatattggctgggaagggattanagaagaaagggattggagggttgaattanttaagcattgtaaacagtgggctattgaagtcctttaatttcattttaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11060" stop="9683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10760" g_stop="9983" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E262858" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10760" e_stop="9983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGA-TGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAATATTGGCTGGGAAGGGATTANAGAAGAAAGGGATTGGAGGGTTGAATTANTTAAGCATTGTAAACAGTGGGCTATTGAAGTCCTTTAATTTC-ATTTTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262960" ref_strand="+" ref_description="SGN-E262960 [cLEG-59-C13]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaaaattggctgggaaaggattanaaaagaagggaatggaaggggttgaattagttaagcattgtaacaggtgggctattgaagtcctttaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11060" stop="9694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10760" g_stop="9994" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E262960" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10760" e_stop="9994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGG-A-GGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAAAATTGGCTGGGAAAGGATTANAAAAGAAGGGAATGGAAGGGGTTGAATTAGTTAAGCATTGTAACAGGTGGGCTATTGAAGTCCTTTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254547" ref_strand="+" ref_description="SGN-E254547 [cLEG-29-B3]">
      <seq>ggctgatataaataaacgggttcctctttttaaaaattctctcaggcacagtgccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11061" stop="10042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10762" g_stop="10342" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E254547" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10762" e_stop="10342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATA</genome_strand>
        <mrna_strand>GGCTGATAT-AAATAA-ACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTGCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477412" ref_strand="+" ref_description="SGN-E477412 [cSTB-48-I23]">
      <seq>ctaaaccctctttacatcttgcaaacaaaactactatcagtccacacctttcaccattgtaagagctccaatggcagcctttgaactactctaccaagctcgtcgtcactgctcatacagaaccccatctcacttttctcctcttattcgttctcattttcacagattactctcctcatcctcatcatcagaaaacccgaatccgaataacccaagtccaattcaacccgtttcctacacccctaagaacccgcaggagagtagtacccgactcgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggatgcaccgaaaatagctccgatttcttatccgacaagggtggcgccgttaccggaggatttgccggaagaggagagagtgaaagtggaaggtatgggtgatgaggagatggagagagagaggagaagaatcgaggcgcaaaaacgtgcggcaatgaggagagttatgaatgttgaagaggaaatggcttcgtttccaacattgattaatgtgacgagtgatgaaaagaagaaaaaagctgtgtatgatcttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18034" stop="16838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17734" g_stop="17138" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E477412" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17734" e_stop="17138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGT-C-CACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGAT---GAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAAAG</genome_strand>
        <mrna_strand>CTAAACCCTCTTTACATCTTGCAAACAAAACTACTATCAGTCCACACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTTGAACTACTCTACCAAGCTCGTCGTCACTGCTCATACAGAACCCCATCTCACTTTTCTCCTCTTATTCGTTCTCATTTTCACAGATTACTCTCCTCATCCTCATCATCAGAAAACCCGAATCCGAATAACCCAAGTCCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCAGGAGAGTAGTACCCGACTCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATGCACCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTGGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAGAGTGAAAGTGGAAGGTATGGGTGATGAGGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGTGCGGCAATGAGGAGAGTTATGAATGTTGAAGAGGAAATGGCTTCGTTTCCAACATTGATTAATGTGACGAGTGATGAAAAGAAGAAAAAAGCTGTGTATGATCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441327" ref_strand="+" ref_description="SGN-E441327 [cSTA-30-C21]">
      <seq>ctctttacatcttgcaaacaaaactactatcagtccacacctttcaccattgtaagagctccaatggcagcctttgaactactctaccaagctcgtcgtcactgctcatacagaaccccatctcacttttctcctcttattcgttctcattttcacagattactctcctcatcctcatcatcagaaaacccgaatccgaataacccaagtccaattcaacccgtttcctacacccctaagaacccgcaggagagtagtacccgactcgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggatgcaccgaaaatagctccgatttcttatccgacaagggtggcgccgttaccggaggatttgccggaagaggagagagtgaaagtggaaggtatgggtgatgaggagatggagagagagaggagaagaatcgaggcgcaaaaacgtgcggcaatgaggagagttatgaatgttgaagaggaaatggtttcgtttccaacattgattaatgtgacgagtgatgaaaagaagaaaaaagctgtgtatgatcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18027" stop="16840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17727" g_stop="17140" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E441327" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17727" e_stop="17140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTACATCTTGCAAACAGAACTACTATCAGT-C-CACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGAT---GAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAA</genome_strand>
        <mrna_strand>CTCTTTACATCTTGCAAACAAAACTACTATCAGTCCACACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTTGAACTACTCTACCAAGCTCGTCGTCACTGCTCATACAGAACCCCATCTCACTTTTCTCCTCTTATTCGTTCTCATTTTCACAGATTACTCTCCTCATCCTCATCATCAGAAAACCCGAATCCGAATAACCCAAGTCCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCAGGAGAGTAGTACCCGACTCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATGCACCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTGGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAGAGTGAAAGTGGAAGGTATGGGTGATGAGGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGTGCGGCAATGAGGAGAGTTATGAATGTTGAAGAGGAAATGGTTTCGTTTCCAACATTGATTAATGTGACGAGTGATGAAAAGAAGAAAAAAGCTGTGTATGATCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300025" ref_strand="+" ref_description="SGN-E300025 [cLEW-11-F22]">
      <seq>acagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgctgaagaggaaatgatttcgtttccaacattgattaatgtgaagagtgatgaaaagaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18010" stop="16858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17710" g_stop="17158" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E300025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17710" e_stop="17158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>ACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315963" ref_strand="+" ref_description="SGN-E315963 [cTOA-26-H16]">
      <seq>atcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaagagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcgggcatgaggagagttatgaatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17999" stop="16918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17699" g_stop="17218" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E315963" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17699" e_stop="17218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGA</genome_strand>
        <mrna_strand>ATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAAGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGGCATGAGGAGAGTTATGAATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266168" ref_strand="+" ref_description="SGN-E266168 [cLEI-3-A11]">
      <seq>agtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17996" stop="16921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17696" g_stop="17221" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E266168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17696" e_stop="17221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGC</genome_strand>
        <mrna_strand>AGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316599" ref_strand="+" ref_description="SGN-E316599 [cTOA-25-H24]">
      <seq>tgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18015" stop="16969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17715" g_stop="17269" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E316599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17715" e_stop="17269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAG</genome_strand>
        <mrna_strand>TGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697159" ref_strand="+" ref_description="SGN-E697159 [FA01AA06]">
      <seq>ctcttctctcttccctaaaccctcattacatcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18048" stop="16971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17748" g_stop="17271" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E697159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17748" e_stop="17271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGG</genome_strand>
        <mrna_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358399" ref_strand="+" ref_description="SGN-E358399 [cLHT-35-K18]">
      <seq>ctaaaccctcactacatcttgcaaacagaactactatcagtccacctttcaccattgtaagaactccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaatccgaataacccaagtccaattcaacccgtttcctacacccctaagaacctgccggagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggatgccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18034" stop="16974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17734" g_stop="17274" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E358399" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17734" e_stop="17274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAG</genome_strand>
        <mrna_strand>CTAAACCCTCACTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAACTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATCCGAATAACCCAAGTCCAATTCAACCCGTTTCCTACACCCCTAAGAACCTGCCGGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATGCCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310360" ref_strand="+" ref_description="SGN-E310360 [cTOA-1-I14]">
      <seq>gcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18014" stop="16976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="17276" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E310360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="17276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAG</genome_strand>
        <mrna_strand>GCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305364" ref_strand="+" ref_description="SGN-E305364 [cLEX-15-P12]">
      <seq>atcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgatctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccacatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18019" stop="17062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17719" g_stop="17362" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E305364" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17719" e_stop="17362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTA</genome_strand>
        <mrna_strand>ATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGATCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCACATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615313" ref_strand="+" ref_description="SGN-E615313 [65110]">
      <seq>agcgctggactgtcaaaatttgtgattttggcctctcaagaataatgacagatgcatctgtgagagactcaacgtctgctggtactcctgaatggatggctccagaactcattcgtaatgagcctttcacagaaaaatgtgacatttttagctttggtgtgataatgtgggagctttgtaccctaaacagaccatgggagggtataccaccctgatcgggtcgtttatgctgttgctaatgaaggatcaaggttagagatacctgaaggaaccctcggcagactaatagtagattgctgggcagagccaaacgaaagacctaattgtgaggaaattttcagtcgacttcttgactgtgaatactcactatgctaagtgaattcagtttgccttcgtatagtggactacattgtagaagcgttaattgatgtgcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20917" stop="18791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20617" g_stop="20400" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20399" i_stop="20291" i_length="109">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20290" g_stop="20218" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="292" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20217" i_stop="19236" i_length="982">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19235" g_stop="19091" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="437" r_length="145" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E615313" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20617" e_stop="20400"/>
          <exon e_start="20290" e_stop="20218"/>
          <exon e_start="19235" e_stop="19091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCTGGACTGTCAAAATTTGTGATTTTGGCCTCTCAAGAATAATGACAGATGCATCTATAAGAGACTCAACGTCTGCTGGCACTCCAGAATGGATGGCTCCAGAACTCATTCGTAATGAACCTTTCACAGAAAAATGTGACATTTTTAGCTTTGGTGTGATAATGTGGGAGCTTTGTACCCTAAACAGACCATGGGAGGGTATACCA-CCTGATCGGGTATGTTAATTTGACCTTGTAACTTGATACAAGTTAATTAGCTCTAGAAAATTGACATCCGTATATTTCTACGTTGCTGCATCTAGTAATGCATTATGCTTAATTTTAGGTCGTTTATGCTGTTGCCAATGAAGGATCAAGGTTAGAGATACCTGAAGGACCCCTCGGCAAACTAATAGCAGGTAATCGCAGTTGGATATAAGTTACATACACACTAGAGATTTTTTACACTATCAATATATTTTAGCTCATAACAAGTTAGTTACCACTTTTACCAGGTTATCACTTAATGTTTATCATAGAGATTACTTATTATCTGTATTGCTCGGATTCTCCAAAGATGTTACTGCACCCGTTTCTGATCCTCTAAAAATACCCTACTTTTGGAGGACCCGACATGCACTGCTAACATTTTTTGAAGAGCCTAAACATCACAGCTTATAATTACCTTATAAGTGACTTGATTACAACAATAGAATACCCAGTGTATTCCAATAAGCGGGGTCTGGCGAGAATGGTGTGTACACAACCCTACCTTGTGAATATAAAGGTTGTTTCCGATAGTCCCTTGGCTCAGATAATGGAGATAATCCTACAAGTGAGATTTGGGGAGGGTGGTGTATACATAGACTTCACATCTACCTTGTGAAGGTAGAGCGGTGGTTTTCGATAGACCCTCGGCACAAGTAATGAAGAAGAGAACAACAGCAACAACAAATTATGCAATAACCCTAGCAAAAGAACCATGTAATAATAAAAATCGATAATATGATGATATAATTCTGACTACTGCAGGTTCTTTTTCTAAACAAATTTGAATTCCATTTCATTTTTTATTTTAAGTTGAGTGAGTAGTAAGTAGCTAAGTGGATTTTAGCACATGCTTCTATGAGAATCTCCAAAGAAATTAGGAGAGTAATTATAATAAGACTGATTAGAGAAATTAGACAAAGTTCAACTACCCACTAACCTTGTACCCTAATCCTCGATCACCATATCCTTCTATCCTGTATGATATCCTTGGTATGTTGTAGGTGTGTCATGTTTGATCTAATCATCTCTCTCCAATACGTATTCAGTTTACGTATGCCTAAGTGATGTGATTGCATAAATATTTTACACTTCATTTTTATGATGAGTTTGGCCATGAACTTATTTTTGCAGATTGCTGGGCAGAGCCAAACGAAAGACCTAATTGTGAGGAAATTTTCACTCGACTTCTTGACTGTGAATACTCACTGTGCTAAGTGAATTCACTTTTTCTTTGTGTAGTGGAATACATTGTAGAGGCTTTAATTGATGTGCTGCT</genome_strand>
        <mrna_strand>AGCGCTGGACTGTCAAAATTTGTGATTTTGGCCTCTCAAGAATAATGACAGATGCATCTGTGAGAGACTCAACGTCTGCTGGTACTCCTGAATGGATGGCTCCAGAACTCATTCGTAATGAGCCTTTCACAGAAAAATGTGACATTTTTAGCTTTGGTGTGATAATGTGGGAGCTTTGTACCCTAAACAGACCATGGGAGGGTATACCACCCTGATCGG.............................................................................................................GTCGTTTATGCTGTTGCTAATGAAGGATCAAGGTTAGAGATACCTGAAGGAACCCTCGGCAGACTAATAGTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGGGCAGAGCCAAACGAAAGACCTAATTGTGAGGAAATTTTCAGTCGACTTCTTGACTGTGAATACTCACTATGCTAAGTGAATTCAGTTTGCCTTCGTATAGTGGACTACATTGTAGAAGCGTTAATTGATGTGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316092" ref_strand="+" ref_description="SGN-E316092 [cTOA-23-J5]">
      <seq>gcagtagatttttccggaaaggatcgccaggagcctgtgaatctttctaggtggaaggtgagacttgaagtcctattaaggagaaatccaactccagcagtgaagagattcctggcaacactagctttttacagactcccagaaattttagcaggggttctccttatatcatgaaaaaattggagtatacattacttaaaagcttggttggaaatttatagagatttatgcatttcagcaaattgtatgcttgcaaaataaacccctaattatatctctaatcagatccctggctaatgcaaatcatgtaatatcttaacaggaaaagtttatttgttagatagtctggagctaaatcaagccaattaaattcatattgggcacacaatgagttggttatatacttttaatagcaaaggagaacaatataagggaaaataacatgagacagttgctgctgtcaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26986" stop="25839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26686" g_stop="26293" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26292" i_stop="26213" i_length="80">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26212" g_stop="26139" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E316092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26686" e_stop="26293"/>
          <exon e_start="26212" e_stop="26139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTTGTAAGCTTTTAAAATTTTCCCATCTATGCATGCCTTTCACGATTAACTAAATAACATTGCAACATGCTGCTAAAATTCAGGGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</genome_strand>
        <mrna_strand>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTT................................................................................GGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44135" stop="42951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43835" g_stop="43251" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43835" e_stop="43251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACGTTTTGGACTAGTAGTCCATAAATCAAGGTTTAATGTTAGTGGGGTACAACTAAATTATTGTGCGATAGTATAATCGTAAGATATCAAATACGGTTAGTGCCTTGGGACATAAAGATTTGTCGCAAAAATGCTGACATTATTGGAGATGTTTTCTCCTATGATGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATACATATAATGAATAATTGTCATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAGCAATCGAGGTGTTGGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATATATAAAGCTTTAAGAATTCTTATATGGATTGAAATAGTCAAAGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTA-TTTTATGAAAAGGTATTGGTAAGACAAAATTTTATTTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTATTAGTGTATATACACAAATATGTTTTGATGCGTTTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTC---A-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44182" stop="43027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43882" g_stop="43327" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43882" e_stop="43327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTCAAATCTATCATAGAGTG-GGTTAGATAAGTGATTGACCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACGTTTTGGACTAGTAGTCCATAAATCAAGGTTTAATGTTAGTGGGGTACAACTAAATTATTGTGCGATAGTATAATCGTAAGATATCAAATACGGTTAGTGCCTTGGGACATAAAGATTTGTCGCAAAAATGCTGACATTATTGGAGATGTTTTCTCCTATGATGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATACATATAATGAATAATTGTCATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAGCAATCGAGGTGTTGGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATATATAAAGCTTTAAGAATTCTTATATGGATTGAAATAGTCAAAGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTA-TTTTATGAAAAGGTATTGGTAAGACAAAATTTTATTTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTC---A-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248723" ref_strand="+" ref_description="SGN-E248723 [cLEF-58-M24]">
      <seq>aaaaaactgtttcaagtcaagatcatctattttctaaagaaataaggcggtgtcaaatcatatcatggagggcaagcaattgaagtttaatcaacctcttctgtcagtaagacgaatctctccagcaatgatttcccagagagatgagaaaaagaaattcgacaattcctttcccactatgacacatcctcctcattacaaatcagaactgaactcaggattagtcgtaaagccaggagctgttcctttcctctgggaacagacccccggaaggccaaaggatgagagtagaccacaaactcatttcacggagaaacctcttaccgcaccaaagcttccacctgggcggaagttaagagataaccaggattacaatcaaacaggaaaatatcaaactgccatgctgagttgcacttcttcagatgaaaatgtaaagaagattgagagttttgacagctcaaaagaagttatgcacgataaggaaaagatcaaatcggagaatgatgatgaaacctatttggatgccttggatgcactttcaagaactgaatcatcctttctaaattgtagtgtaagtggcttaagtgaatttgatgagccgaatgcaaaacaatctcgaacttcttcagcgaatccgcagactaaagattttatgatgggtcgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52827" stop="55752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53127" g_stop="53165" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53166" i_stop="54822" i_length="1657">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54823" g_stop="55452" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="669" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E248723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53127" e_stop="53165"/>
          <exon e_start="54823" e_stop="55452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAGGTACACTGTGTTTTTTAATCAGTTTTAATTTTTATTTATGTTCTTGTATGTTTTTTTTTGAATTTTCTGTTGGATTTATATGTTTATTACTGCTCCATTGGATATTTGATTTTTTTTCCCTAGGCTTATTTAGCTGAATTTCAAGAATTCTTCAAGATTCAATTTTTTCCAACAAAGTTTTTGTAATTTTTTTTTTGGCAAAAAAAGGTTAGTACCATCCTCTTTTTGAAAGATTTTACAAAAAAAAATAAAAAAAATGATAAGGTAATTTTTTAGTTGAATTTCAAGAATTCTTTCTTCCAGTTTCAATCTTCTGAATAATCAAGCTATTAAAGGAAAAGTTACAACAAAGTTTTTTAAAAACATTTGTTGGGTTTTTCTATAAATTGTTGCTTTGAACTTTGGTTTTTTTTTTTTTTTTAGAAAAAAAAAATACTACCTCTTTTTGAAATATCTTAAAAACCTGAGTGTGAAATCTTGAAAAAGATAGTAACTTTTTTTTTCTCCATAAAAAAACAGTCGAAACAAACACTTCAAAATTATTTTTTGTTAAAAGTTTAGATTCTAAATTGATATCCAAATCAAGTATCTTGATATTGCAAATGAAAATTATGTAGTCTGTTTCTGGTTAAAGATTTGTAATGTCAAAGTAGTTGTATGATAATGTTAAAGAAATGCCAAAAGTATCTTGTTTTGAAATGAATTGGACATGAATGGGATCATATACTTGATTCTAAGTAACTCGGAACTTGGACCAAAAGTCATGTAGATTTTGGCTAGGCCTTTGTATTCTCAGTACTTATGAACTCTATATGTAATCTAGTAAGTTGCCTTTTCAAGAATCTAGAACCCATGAACTCAAAATCCTAGCTCCGCTTCAGGGAGTACCTTGGTTGGAAGTCCGAGTCAAAATTATCATGTAGGGGGTTTGGCGAGGTGGAGTTTACCATAAAAGATTTATCTACTTGGTTCACGCCATCAAGTCGATCTTGAGGTGGAGTTTACCATAAAAGATTTATCTACTTGGTTCACGCCATCAAGTCGATCTTGATAGTACGAATATGAGAAGTGTCATAATCGCATTGATGAATGAATGATGTCCTCAAGATTTTATAGTTAGGCTTGTAAAATATATGTTTCTCTTCACCTGCTTTCCTCTTCAATCTTATTGTCATTGGCCAGTGGAGTTGTTCTGAAGATCGACGTATGTTGCTTGGACTCTTTTGCCAGACCTTGTATCAGATCCTCCAAAAATGAACTACTTCCGGTGTATTTGAAGAGTGTCGTCAGCAACATAATTGAAGACACTCGTATCAATCTAAAGTGTGTTTCCCTTTGAACTATTTAGCCAAGGTTTCCCCACAGAGTTCTCCAATAAAGTGTTTCTGACTTTTGTTGATAGTAATTGCAAATAAGCAAGTAGGGGCCGAGAGGTGGCGAGATTTTGGAAGTGGTTTCGTTATTTTTTGATTCGTATCTATTTACATAGAGTTTATCTAAGCTTTGAGTGTACGCAACATCATTTCTATGAGGACATATATAGTTAAAAATGAAGGCACTGGTGTAACATCATCGGTCAGCTGGCCCCTGTTACATTATCGTTTTGTTGTTGTAATACATTGAAGAGATTTTCACAATTTGATTGTTGAATGTGCAGAAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAGGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAGGATTTTATGATGGGTCGATTTCT</genome_strand>
        <mrna_strand>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAAGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAAGATTTTATGATGGGTCGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275436" ref_strand="+" ref_description="SGN-E275436 [cLEN-10-D22]">
      <seq>caggacctattcaacttatgccaatgacccttacaataatatgacaatgcttagcacgaacgcgaaagaaaataatcctgagctcaagtgcttgtctgatcagaacaatatcagggaagtagatgttttaactccttttgtagagaaaactctgtacatagatattgtgcataaaacggattcatcagttaagatatcatgttctctagataaaaaaccatccaagttacaacacaaggacgttgagatacttgaacagatgataaaacaaaaaccatttttagattcttcactttattcgtctgagacttcattaaagccatatgttcaaaggaaagctgactgcaatccaccacgttcagcggaaagactgaacaatgaaagagagacgaaagcatggacatctacgggtcaagctcgagattgttaccaagatacaacgaccttagcaaagtctgacagtgatggtgtagaaaaaaatagaaagccaattccgagaagagaaaagttagaggactcatgcaaagtgcacccagagtttcttgctccaccacctttaccgaaatctccatcagattcatggctttgccgcactttgccttctttatccacaaagaatgcatcttcacgggcttatatcgggacaggactgaatcctaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55766" stop="57027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56066" g_stop="56727" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E275436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56066" e_stop="56727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</genome_strand>
        <mrna_strand>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422856" ref_strand="+" ref_description="SGN-E422856 [STM-41-I15]">
      <seq>caaagatggacctgaaatttgagatattttccctgggtgatgtttcaaaaactgttggaaagcttctaacagacatgtcaagtctttatgatgtcggtcgacgtaagagatctgcagggctattactcattgaccgcactcttgaccttcttactccatgctatcatggggattcacttgtggatcaaatgttttcatcattgcctcacagagaacggatggcatccttgagtcaatctaaaagctcccaaagccaagttaaacttggccctgcttacttgcaacgttctcccctcaccgttcagataccacttaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgtggttggaattcaggagactcaacttctcagatggttgagttggtgaattttagcactaaacttagtggtgaaatgtcctcacaagattttcagagtgacctttgtggttctttcgtctctacggaaaattttcatggaacaccgtacctagaagccatactagagcgaagaacaaaagatggggctgtgctgatcaagaaatggctgcaagaaagcttacgtcgagaaaatatatcattgaatgcaaaaatccgtcctggttatgcttcaaaatcagatctgcagaactatggttaaggcattagctaaaagccagtcattgctggcgaaaaacaagggattatccagctagcagcagcagcactatctgcattagatgaatccatagtgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64887" stop="66271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65189" g_stop="65971" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="784" r_length="779" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E422856" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65189" e_stop="65971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACCTGAAACTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAG-ACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTGCACTAGATGAGTCACATAGTGCTAAA</genome_strand>
        <mrna_strand>ATGGACCTGAAATTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTCGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTATCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTGAGTCAATCTAAAAGCTCCCAAAGCCAAGTTAAACTTGGCCCTGCTTACTTGCAACGTTCTCCCCTCACCGTTCAGATACCACTTAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAGGAGACTCAACTTCTCAGATGGTTGAGTTGGTGAATTTTAGCACTAAACTTAGTGGTGAAATGTCCTCACAAGATTTTCAGAGTGA-C--CTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGAACAAAAGATGGGGCTGTGCTGATCAAGAAATGGCTGCAAGAAAGCTTACGTCGAGAAAATATATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGAACTATGGTTAAGGCATTAGCTAAAAGCCAGTCATTGCTGGCGAAAAAC-AAGGGATTATCCAGCTAGCAGCAGCAGCACTATCTGCATTAGATGAATC-CATAGTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449212" ref_strand="+" ref_description="SGN-E449212 [cSTS-5-B22]">
      <seq>caaagatggacctgaaatttgagatattttccctgggtgatgtttaaaaactgttggaaagcttctaacagacatgtcaagtctttatgatgtcggtcgacgtaagagatctgcagggctattactcattgaccgcactcttgaccttcttactccatgctatcatggggattcacttgtggatcaaatgttttcatcattgcctcacagagaacggatggcatccttgagtcaatctaaaagctcccaaagccaagttaaacttggccctgcttacttgcaacgttctcccctcaccgttcagataccacttaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgtggttggaattcaggagactcaacttctcagatggttgagttggtgaattttagcactaaacttagtggtgaaatgtcctcacaagattttcagagtgacctttgtggttctttcgtctctacggaaaattttcatggaacaccgtacctagaagccatactagagcgaagaacaaaagatgggggctgtgctgatcaagaaatggctgcaagaaagcttacgtcgagaaaatatatcattgaatgcaaaaatccgtcctggttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64887" stop="66142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65189" g_stop="65842" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="656" r_length="651" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E449212" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65189" e_stop="65842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACCTGAAACTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGAT-GGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCT</genome_strand>
        <mrna_strand>ATGGACCTGAAATTTGAGATATTTTCCCTGGGTGATGTTT-AAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTCGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTATCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTGAGTCAATCTAAAAGCTCCCAAAGCCAAGTTAAACTTGGCCCTGCTTACTTGCAACGTTCTCCCCTCACCGTTCAGATACCACTTAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAGGAGACTCAACTTCTCAGATGGTTGAGTTGGTGAATTTTAGCACTAAACTTAGTGGTGAAATGTCCTCACAAGATTTTCAGAGTGA-C--CTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGAACAAAAGATGGGGGCTGTGCTGATCAAGAAATGGCTGCAAGAAAGCTTACGTCGAGAAAATATATCATTGAATGCAAAAATCCGTCCTGGTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315144" ref_strand="+" ref_description="SGN-E315144 [cTOA-24-K14]">
      <seq>ttctaacaaacatgtcaagtctttatgatgttggtcgacgtaagagatctgcacggctattactcattgaccgcactcttgaccttcttactccatgctgtcatggggattcacttgtggatcacatgttttcatcattgcctcacagaaaacggatggcatccttaagacaagctaaaagctcccgaagccaggttaaactatgccctgcttacttacagcgttcacccctcaccgtacagataccactcaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgcggttggaattcaagagactcaacttctcacatggaccaattggtgaattttagcactaaacctagtggtgaaatgtccacactagattttcagagtgaccttctttgtgggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64947" stop="65988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65247" g_stop="65688" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E315144" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65247" e_stop="65688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTT</genome_strand>
        <mrna_strand>TTCTAACAAACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCACGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCACATGTTTTCATCATTGCCTCACAGAAAACGGATGGCATCCTTAAGACAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTATGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGCGGTTGGAATTCAAGAGACTCAACTTCTCACATGGACCAATTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACTAGATTTTCAGAGTGACCTTCTTTGTGGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456889" ref_strand="+" ref_description="SGN-E456889 [cPRO-1-A7]">
      <seq>tggatcaaatgttttcatcattgcctcacagagaacggatggcatccttgagtcaatctaaaagctcccaaagccaagttaaacttggccctgcttacttgcaacgttctcccctcaccgttcagataccacttaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgtggttggaattcaggagaactcaacttctcagatggttgagttggtgaattttagcactaaacttagtggtgaaatgtcctcacaagattttcagagtgacctttgtggttctttcgtctctacggaaaattttcatggaacaccgtacctagaagccatactagagcgaagaacaaaagatggggctgtgctgatcaagaaatggctgcaagaaagcttacgtcgagaaaatatatcattgaatgcaaaaatccgtcctggttatgcttcaaaatcagatctgcagactatggttaaggcattagctaaaagccagtcattgctggcgaaaaacaaaggaattatccagctagcagcagcagcactatctgcattagatgaatcacatagtgctaaatgggatgcatttagcagtgctgagaagatactgaacgtaaatgctggggacacaagccaaagtcttgctgctcaaattagtgatctcataaataaaagtgcgttagttagttcacagggtaataataagatggatgctcaacgggggcttcttactctacagatgctctgctactcacagttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65064" stop="66459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65364" g_stop="66159" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E456889" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65364" e_stop="66159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAG-ACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTGCACTAGATGAGTCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAATGTAAATGCTGGGGACACGAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAACAAAATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTTGTTGG</genome_strand>
        <mrna_strand>TGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTGAGTCAATCTAAAAGCTCCCAAAGCCAAGTTAAACTTGGCCCTGCTTACTTGCAACGTTCTCCCCTCACCGTTCAGATACCACTTAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAGGAGAACTCAACTTCTCAGATGGTTGAGTTGGTGAATTTTAGCACTAAACTTAGTGGTGAAATGTCCTCACAAGATTTTCAGAGTGA-C--CTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGAACAAAAGATGGGGCTGTGCTGATCAAGAAATGGCTGCAAGAAAGCTTACGTCGAGAAAATATATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGGTTAAGGCATTAGCTAAAAGCCAGTCATTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCAGCAGCAGCACTATCTGCATTAGATGAATCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAACGTAAATGCTGGGGACACAAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAATAAGATGGATGCTCAACGGGGGCTTCTTACTCTAC-AGATGCTCTGCTACTCACAGTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458229" ref_strand="+" ref_description="SGN-E458229 [cPRO-5-E17]">
      <seq>gggatcaaatgttttcatcattgcctcacagagaacggatggcatccttgagtcaatctaaaagctcccaaagccaagttaaacttggccctgcttacttgcaacgttctcccctcaccggtcagataccacttaataatttcctaagagaggatacttcaaggtcttacaactttcagctggtggaaagcgttgaagcatttctccgtggttggaattcaggagactcaacttctcacatggatgaggtggtgaattttagcactaaacatagtggtgaaatgtcctcacaagattttcagagtgacctttgtggttctttcgtctctacggaaaattttcatggaacaccgtacctacaagccatactagagcgaagaacaaaagatggggctgtgctgatcaagacatggctgcaagaaagcttacgtcgagaaaatatatcattgtatgcaaaaatccgtcctggttatgctatcaaatcagatctgcagactatggttaaagcattagctaaaagccagtcattgctgggcgaaaacaaaggaattatccagctagcagcagcagcgctatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65065" stop="66245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65364" g_stop="65945" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E458229" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65364" e_stop="65945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTG</genome_strand>
        <mrna_strand>GGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTGAGTCAATCTAAAAGCTCCCAAAGCCAAGTTAAACTTGGCCCTGCTTACTTGCAACGTTCTCCCCTCACCGGTCAGATACCACTTAATAATTTCCTAAGAGAGGATACTTCAAGGTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAGGAGACTCAACTTCTCACATGGATGAGGTGGTGAATTTTAGCACTAAACATAGTGGTGAAATGTCCTCACAAGATTTTCAGAGTGA-C--CTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTACAAGCCATACTAGAGCGAAGAACAAAAGATGGGGCTGTGCTGATCAAGACATGGCTGCAAGAAAGCTTACGTCGAGAAAATATATCATTGTATGCAAAAATCCGTCCTGGTTATGCTATCAAATCAGATCTGCAGACTATGGTTAAAGCATTAGCTAAAAGCCAGTCATTGCTGGGCGAAAACAAAGGAATTATCCAGCTAGCAGCAGCAGCGCTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422857" ref_strand="+" ref_description="SGN-E422857 [STM-41-I15]">
      <seq>atcacatcaacaattgcttctttcataaaatgttcctcttgccaagagaaaggaccaacagtcccagaagatgggaaattctcacctgccaatatatatccaacaactgtgagtagcagagcatcttgtagagtaagaagcccccgttgagcatccatcttattattaccctgtgaactaactaacgcacttttatttatgagatcactaatttgagcagcaagactttggcttgtgtccccagcatttacgttcagtatcttctcagcactgctaaatgcatcccatttagcactatgtgattcatctaatgcagatagtgctgctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66558" stop="65626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66258" g_stop="65926" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E422857" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66258" e_stop="65926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCATCAACAATTGCTTCTTTCATAAAATGTTCCTCTTGCCAAGAGAAAGGACCAACAGTCCCAGAAGATGGGAAATTCTCACCTGCCAATATATATCCAACAACTGTGAGTAGCAGAGCATCTTGTAGAGTAAGAAGCCCCCGTTGAGCATCCATTTTGTTATTACCCTGTGAACTAACTAACGCACTTTTATTTATGAGATCACTAATTTGAGCAGCAAGACTTTGGCTCGTGTCCCCAGCATTTACATTCAGTATCTTCTCAGCACTGCTAAATGCATCCCATTTAGCACTATGTGACTCATCTAGTGCAGATAGTGCTGCTGCAGCT</genome_strand>
        <mrna_strand>ATCACATCAACAATTGCTTCTTTCATAAAATGTTCCTCTTGCCAAGAGAAAGGACCAACAGTCCCAGAAGATGGGAAATTCTCACCTGCCAATATATATCCAACAACTGTGAGTAGCAGAGCATCTTGTAGAGTAAGAAGCCCCCGTTGAGCATCCATCTTATTATTACCCTGTGAACTAACTAACGCACTTTTATTTATGAGATCACTAATTTGAGCAGCAAGACTTTGGCTTGTGTCCCCAGCATTTACGTTCAGTATCTTCTCAGCACTGCTAAATGCATCCCATTTAGCACTATGTGATTCATCTAATGCAGATAGTGCTGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453488" ref_strand="+" ref_description="SGN-E453488 [cSTS-20-M13]">
      <seq>attagatgaatcacatagtgctaaatgggatgcatttagcagtgctgagaagatactgaacgtaaatgctggggacacaagccaaagtcttgctgctcaaattagtgatctcataaataaaagtgcgttagttagttcacagggtaataataagatggatgctcaacgggggcttcttactctacaagatgctctgctactcacagtagttggatatatattggcaggtgagaatttcccatcttctgggactgttggtcctttctcttggcaagaggaacattttatgaaagaagcaattgttgatgcgattgttgagaacccaacagttgcgaaattaaagtttctgaaaggtttaactcaggatctagaagccaactttaacagaaaatcagaagagaagaaggaagatctttctaataccgaaagcattgattttgatgatgacgattggggtagttggggtgatgaagattctggaaaagataaaagaaaagagcaagtgtatgatgacatgcaattaaagttagaattacgtgatagggtggataatctattcaaattctttcacaaattgtccagcttaaaaaagaatgtttcattcagagagtggtcacagtctctgagtaagttcaatgatgatccttactcaaacaaaggactgctttataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65647" stop="66921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65947" g_stop="66621" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E453488" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65947" e_stop="66621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGATGAGTCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAATGTAAATGCTGGGGACACGAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAACAAAATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTTGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTATTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACTGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTGAAGTTAGAACTACGTGATAGGGTGGATAATCTATTCAAATTTTTTCACAAATTGTCCAGCTTTAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTTAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGT</genome_strand>
        <mrna_strand>ATTAGATGAATCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAACGTAAATGCTGGGGACACAAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAATAAGATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTAGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTGTTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACCGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTAAAGTTAGAATTACGTGATAGGGTGGATAATCTATTCAAATTCTTTCACAAATTGTCCAGCTTAAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGTCTCTGAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463264" ref_strand="+" ref_description="SGN-E463264 [cPRO-14-I3]">
      <seq>ttcaaattctttcacaaattgtccagcttaaaaaagaatgtttcattcagagagtggtcacaggctctgagtaagttcaatgatgatccttactcaaacaaaggactgctttataaagtgctatcaagggtgttagataagcatgaagtacctggcttagagtatcattcatctactgttggccgcctattcaaaagcgggtttgggagattcggccttgggcaggctaaaccaagtctggcagatcacgatgttattctcgtgtttgttgtgggaggcataaatggtgtagaggttcgagaagcccaggaggcattatccgagagcaacaggcctgaagtcgaattaattttaggtggaacaacttttcttacacctaaagatatgtttgaactactgctgggcgattattgttgtgtttaaggctgtgtagctttctttgttttgttatgtaaaatttaagatgaaaagttctgtctaatgtctgatatttagagaatacaaaacatattttttccttaatgtaaacagnattgcaatttatatgattttncatatattttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66203" stop="68105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66503" g_stop="66727" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66728" i_stop="66801" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66802" g_stop="66870" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="294" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66871" i_stop="67535" i_length="665">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67536" g_stop="67800" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="565" r_length="271" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="579"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E463264" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66503" e_stop="66727"/>
          <exon e_start="66802" e_stop="66870"/>
          <exon e_start="67536" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTTTTTCACAAATTGTCCAGCTTTAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTTAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTTGGTCTTGGGCAGGTATGATTCAATTAGATATCAATATTTTCATTGCTAGCCTAAGTTGCTGATTTGATTCTGGAATTTTTGCACAGGCAAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAGGTTTGTTTTCCTTGAACTCTTAGTGAATTTTCATGTTTCTGCTTTCATATTGTTTTAACGAATTTGCAACACATGCAACAACGGTGAAGATATTAGTTTTTTTTTGAATGACAAGGGAAACTGGCAGCCGCTACCCTTTGGGTGCGCACGGGGCAAAACCCTCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGTGGTAACCCGCACTAGGCAAGCCTGATGCGACGAGCTCGACCTAGAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGATCCCAAGCCTAAACCATGGGCCACCCCGAAGGGTTAAGATATTAGTTAATAAAGCAAAAAGACTATAAAACACTGCTAGTAAGCTCGTTGATGGGAAACCAAGAGTGTGACCTAGTTGTCAATGAAGTGGTTTTAGAACCCTGAGGTCTTAGGTTCTAAACTCATCGGAGGCAAAAAAAACACTTAGGCGATCTTCCCATCTGTCCAAGCATTGGTGGACAGAGTTACCTGACATCGATGCTATTTGAAATAACAGTCCCTCCCTGTTCCATCACTATAAAACACTGTAATCCTTTCTCTTTCAATTGAAGTATGCTCGTTGGTGCTACGTGAAATAACAGTCCGTGCTTGTTCTATCAATAGGTTCGAGAAGCTCAGGAGGCATTATCTGAGAGCAGCAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTGTAAGGCTGTGTAGCTTTC-TAGTTTTGTTATGTAAAGTTTAAGATGACAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAAC-----TTTTCCTTAATGTAAACAGCATTGGAACTTATATGATTTTCAATATATTTTTC</genome_strand>
        <mrna_strand>TTCAAATTCTTTCACAAATTGTCCAGCTTAAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTGAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTCGGCCTTGGGCAG..........................................................................GCTAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGAAGCCCAGGAGGCATTATCCGAGAGCAACAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTTTAAGGCTGTGTAGCTTTCTTTGTTTTGTTATGTAAAATTTAAGATGAAAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAACATATTTTTTCCTTAATGTAAACAGNATTGCAATTTATATGATTTTNCATATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83377" stop="84759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83679" g_stop="84457" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="830" r_length="770" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83679" e_stop="84457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCTGCAAATTGTTTCCGTGTGATATTGTTGCCAATCTGTGTTATGAAAATCAAAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAAAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGGAATACTTTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGAAATATAACCTCCCAGGGTAAAATGATATTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAGAAAATTTGTAGGGAAATATTCTAAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCGTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAATTTTTAAATATAATGGAATTCAAAACGGGTCACGCACGCGAATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGGACATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCG</genome_strand>
        <mrna_strand>ACA-GATTTAAATAATTTCC-T-TAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGT-CCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAAAAAA-TATCTCTCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83377" stop="84494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83679" g_stop="84194" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="572" r_length="512" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83679" e_stop="84194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCTGCAAATTGTTTCCGTGTGATATTGTTGCCAATCTGTGTTATGAAAATCAAAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAAAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGGAATACTTTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGAAATATAACCTCCCAGGGTAAAATGATATTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAGAAAATTTGTAGGGAAATATTCTAAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACGACCATTAA</genome_strand>
        <mrna_strand>ACA-GATTTAAATAATTTCC-T-TAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGT-CCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717974" ref_strand="+" ref_description="SGN-E717974 [FC03BB06]">
      <seq>ggcggccaaatcggccgattgactctcacaactgacccaaaaatcaattcttgttttgtgggttttgttgattttccattgaaaaatgggaaggatatttgttgtagatcttgaaggcaggatttacaagtgcaaattctgccaaacccaccttgctcttgctgatgaccttgtttctaggggatttcattgccgcaaaggaaaagcctacttgttcaataaagtggtgaacgtaactgttggacctcaggaggagagagcgatgctttctgggatgcacacagtagcagatatattttgttgctgttgcgggcaaattgttggctggaaatatgaggctgcacacgaggaaagccagaagtataaagaaaagaagtttgttctcgaaaggggtaggatcattgacggagttgacactgaattctacatcgattctcgtccaactattagtgatactgaggatgcataggccttgttatgtgatgtatctatctaaacatgtgtggttgttgtatcttgtaagtctagtttgtagatatagggaagaagctgtttgtatcaaaatattgtgtggttgtagcttgtaagtccagtttgctagacgctagtatataaagaaggttatccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85242" stop="89846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85546" g_stop="85704" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="181" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85705" i_stop="87499" i_length="1795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87500" g_stop="87543" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="225" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87544" i_stop="88839" i_length="1296">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88948" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="334" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88949" i_stop="89137" i_length="189">
            <donor d_prob="0.191" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89138" g_stop="89193" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="390" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89194" i_stop="89305" i_length="112">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89306" g_stop="89546" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="631" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="662"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E717974" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85546" e_stop="85704"/>
          <exon e_start="87500" e_stop="87543"/>
          <exon e_start="88840" e_stop="88948"/>
          <exon e_start="89138" e_stop="89193"/>
          <exon e_start="89306" e_stop="89546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAACTGACCAAAAAAATCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGGGTAACAATTTCTTCAATTTCCCTTTAAGTTTTTATGAATAAAAATCTTATCTTTGTTATATAGAGCTTTTCATTTGGTTTTGGCCTTTTGGGGCTTGTTGTTTCTTTGAGTAATTAGCTTTTATTTACTTGTTTTTGCATATTAGATGGTATTATTTTGTTTTGAGAAAGGATGCTTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGGTATTTTTTTTGTTTTGAGAAAGAATAATTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGTGGTTGTTTCTACACATCCTCCAAAAGTACAACCAAAGGAGAAAACAGGGCTATTCAACTAGAAAAAAAAAATGTTCTTGCATGATCATTTGCTTGTGCTAGTTTTTTTGGACACATGTATGTCGAGTCATGTAGTACTTAGGCATTTAGCCATGTTTCATTGTGAAATCTTAAAAAAAAGTGGATTCTTTTTTTCAAAGTGAATTTTATGCCCAAACATGCTTTTCAGTGTTTAACTCCGGAAAAATAAGTGTTCTTTTTTAATAATATATGGAAACATGTGTAGAGAGTTGTTATGCTTTTTGCTCTATTTGTTTGTTTCGTTCTGGGCTGTGACGGAAGTGATTTAACTTGATAATTGGAAGACTAGGTATGGTAGTCATGCTTATTAGCCTTCAAGTCGGAAGTGATTTGGTTTCTATCATTAGGTATGAGATCTTTACCTATTTATACTAAATGTCACCTAGCTTAATTTTTCAAAGTTGACGAAAAGTTTTTAACATCTTTCGAGATGGATGTATTTTGTGATATATATGGAAGCGTTTATGCTATAATTGAAGTGTTGAAAATGGATTATGTACAATTTGCATGAATTTTGTAACCGATATCTCCACTTGGTTTATTATTCTGGCTTTGGTTATGTTTTGAATACCTTTGTTTGCTCTCATGCTATTAACTTCTTACCAAATGGATGTATTTTGTGATATATATGGAAGCATTTGTGTTATAAGTGAAGTGTTGAAAATAGATAATGTACAATTTGCATGAATTTTGTTACCGATATCTCATTTGGTTTACTATTCTGGCTTTTGTTATGTTTTGAGTACCTTTGCTTGCTCTCATGCTATTCTATCTGATAATACAATCAAATCTCTTTATAACAATAACATTTGTCCTAATATTTTTTGGTTGCATAGAAAAATGTTGTTATAGAGAATGTATAATATAACATTACATTGTATGTCCTCACCCCTACTTCAAAACCTTTCTTTTAGTCGAGGGTCTATAGGAAACAATCTCTCCCTCTAGTCTCTACCCCACAAAGGTCTGTGTACATTATATCCTTCGCAGACTCCACTTGTGAAATTATACTAGGTATATTGCTGTTTTAAATGACAGTATAAAGTACATTTTTGTGTGGATGATCAATGAGAACGGATCTTGTAAACAGATTTAAGATTTAGCTCATTAGTTAATTTCTATATTTTGAATGTAATTATTGATTATCCTTCTGTCAAATATAAGTGTCTATCCCTAAAAGAAATTAAACTTAAGTTTTTCTCTTGAATAGCTATAAATGATGACATGCCATTTTCATGCAAGTGTTAATAAACTCGAATAACACAATGTAAAAACATTAAGTTTAATTACCAAATTCACAAAGATCAGGCTTGGAGAGTGATTCAGCTTTTAATCAATCTTTATCATTATGTAAATTTTCTGTCACGATTTCTTATTCATTGTATTGCACTTTTGGCTTGCTTGGTTTCTGGTTTATTAACGGTTGGTTTTATGGTCAGGGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGTGTGAGTGCCTATTAATTTCTCAACTACACATTGAGTAACTAGTTTTGTTTTATGACTTAATGTGCTTGTTTCACACTTGAATTGACTTCGTTGATAGTCATGCATTCATTTAAGATTGATGTCTGTGACATTCTTTTTGTATCCTATATTACTAGTTATGGTATCGGGAAGAGATTGAGATTTATTAGATGTAGTTACATAAATTGGGACAGAGTGATTGTTAAATTTTTTGACAAAAGAAAAAGATATATGTTATATTAACTTTATGTTTTATATGCCGTCTTTTCTTTGTATGATAGATTCATGATTGGCAGTGTTATGGAATTGATCTGTCCTTCATCCCTTGTATCAAATTCTCAAAATTTTACCACGTCGACGTGTCTGCGAATCATATGCATTTCACATCCATCTTCGTGCTTTCTAAATTGTAATGGATTGAGGAATTCACATTGTATGAACTGTAATACTATAACTTTAACCTCTAGAGAGATGTTATATGTACAAGAAAAGACTTCCTTTCTAGTGATGACCCCGACTTATTAGTGAATCCAAAAGAGTTCCCAATTTCAGTATTGCACCCATATATTAATTTTACGTTACTGAACAATTAAACGCTAGAGCAACAGCATCCAACTTAACCGTACCACTTGAATGCACTAAACATCAGCAACTTGATGTGCATTGAACATGGCTGTTGAGCTGAAGATGTATTTGAATAGAAATTAGTTTTTGCTTTTTCTAGTAGCGGAACATGTATATTTTCTCTTATCCGTCCTATCTTATAGATTTGGGTTCCCAAGAGGTATCACTAATAAGAAAGATTTTAGACAAACCTCCCTTTTTTCTTTCTCACAAATAGGAAGTTCCGATTCCAACTTGGATATTAAAGGGATTACCAGATATGCACATTTTTTCTCGAATTTTACTCTTACCGCTCTGATTTTCTATGCAAGATGTTGTCTAATTAGACCACGAATTATTAATGTATGGTAAAGTTCTATTGCTATTTCACGAGGCAATCCACTTTGATGTAGTGAAAGTGAAGGATCCACGACAATGAATTTTCAAAAACATGATCAGAAAATGAAAAAAAAAAAGATCTTTGGTAAGGACAAAATATATCAAGTTAGTAAAGACTAAAGATTACTGCTTCATTTCTCTTTCTTTGGTCGATGATCATAGAAGCCTTGGCAGTGCAATAGATATCATTTTCTCTGCCTTCCCAACACTTTTCAACTGTGCACCCTTTGATATATATGCGGAGGTCTAACTGCTCCGTCTGATTTTGTGATTCAGGGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATATGTATTCCCTTTCGTTCTCTCTCTCTATTTCTCGTGCATGTAGAAATAGACACCAAAACAAACGCACAGACAAAAAGAGGAGGACAATAGTTGCTCCTCTCGCCATAAATATGTTACCAATTGCACATGCATGATGTACCTACACCGGAAACTTTGTTAACAACTACCACTTCACGTTTCTATCATGCAGGAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAGGTGCATCTTTTTTCTTGTTGATTTCACATTCGACATATATACATGAAAACATCTTTCTGTTTTGAATCTCTTCCATATAATACTCCATGCTCTTCTGGTTGTTTGTTAACAGGGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAA</genome_strand>
        <mrna_strand>TCTCACAACTGACCCAAAAA-TCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCATTGCCGCAAAGGAAAAGCCTACTTGTTCAATAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATAT.............................................................................................................................................................................................GAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAG................................................................................................................GGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607716" ref_strand="+" ref_description="SGN-E607716 [23687]">
      <seq>gttttgttgattttccattgaaaatgggaaggatatttgttgtagatcttgaaggcaggatttacaagtgcaaattctgcaaaacccaccttgctcttgctgatgaccttgtttctaggggatttcattgccgcagaggaaaagcctacttgttcaataaagtggtgaatgtaactgttggacctcaggaggaaagggcgatgctttctgggatgcacacggtagcagatatattttgttgctgttgtgggcaaattgttggctggaaatatgaggctgcacacgaggaaagccagaagtataaagaaaagaagtttgttctcgaaaggggtaggatcgttgacggagttgacactgaattctacatcgatactcgtccaactatcagtgatactgaggatgcataggctttgttatgttatgtatctatctaaacatgtgtgattgttgtatcttgcaagtctagtttgtagatatagggaagaagctgtttgtatcaaaatattgtgtggttgtatcttgtaagtttagtttgctagtatataaagaaggttatgcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85285" stop="89846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85585" g_stop="85704" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85705" i_stop="87499" i_length="1795">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87500" g_stop="87543" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="163" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87544" i_stop="88839" i_length="1296">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88948" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="272" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88949" i_stop="89137" i_length="189">
            <donor d_prob="0.191" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89138" g_stop="89193" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="328" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89194" i_stop="89305" i_length="112">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89306" g_stop="89546" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="562" r_length="234" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E607716" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85585" e_stop="85704"/>
          <exon e_start="87500" e_stop="87543"/>
          <exon e_start="88840" e_stop="88948"/>
          <exon e_start="89138" e_stop="89193"/>
          <exon e_start="89306" e_stop="89546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGGGTAACAATTTCTTCAATTTCCCTTTAAGTTTTTATGAATAAAAATCTTATCTTTGTTATATAGAGCTTTTCATTTGGTTTTGGCCTTTTGGGGCTTGTTGTTTCTTTGAGTAATTAGCTTTTATTTACTTGTTTTTGCATATTAGATGGTATTATTTTGTTTTGAGAAAGGATGCTTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGGTATTTTTTTTGTTTTGAGAAAGAATAATTAGATGGTATTTTCTTGTTTTTGCATAATTAGATGTGGTTGTTTCTACACATCCTCCAAAAGTACAACCAAAGGAGAAAACAGGGCTATTCAACTAGAAAAAAAAAATGTTCTTGCATGATCATTTGCTTGTGCTAGTTTTTTTGGACACATGTATGTCGAGTCATGTAGTACTTAGGCATTTAGCCATGTTTCATTGTGAAATCTTAAAAAAAAGTGGATTCTTTTTTTCAAAGTGAATTTTATGCCCAAACATGCTTTTCAGTGTTTAACTCCGGAAAAATAAGTGTTCTTTTTTAATAATATATGGAAACATGTGTAGAGAGTTGTTATGCTTTTTGCTCTATTTGTTTGTTTCGTTCTGGGCTGTGACGGAAGTGATTTAACTTGATAATTGGAAGACTAGGTATGGTAGTCATGCTTATTAGCCTTCAAGTCGGAAGTGATTTGGTTTCTATCATTAGGTATGAGATCTTTACCTATTTATACTAAATGTCACCTAGCTTAATTTTTCAAAGTTGACGAAAAGTTTTTAACATCTTTCGAGATGGATGTATTTTGTGATATATATGGAAGCGTTTATGCTATAATTGAAGTGTTGAAAATGGATTATGTACAATTTGCATGAATTTTGTAACCGATATCTCCACTTGGTTTATTATTCTGGCTTTGGTTATGTTTTGAATACCTTTGTTTGCTCTCATGCTATTAACTTCTTACCAAATGGATGTATTTTGTGATATATATGGAAGCATTTGTGTTATAAGTGAAGTGTTGAAAATAGATAATGTACAATTTGCATGAATTTTGTTACCGATATCTCATTTGGTTTACTATTCTGGCTTTTGTTATGTTTTGAGTACCTTTGCTTGCTCTCATGCTATTCTATCTGATAATACAATCAAATCTCTTTATAACAATAACATTTGTCCTAATATTTTTTGGTTGCATAGAAAAATGTTGTTATAGAGAATGTATAATATAACATTACATTGTATGTCCTCACCCCTACTTCAAAACCTTTCTTTTAGTCGAGGGTCTATAGGAAACAATCTCTCCCTCTAGTCTCTACCCCACAAAGGTCTGTGTACATTATATCCTTCGCAGACTCCACTTGTGAAATTATACTAGGTATATTGCTGTTTTAAATGACAGTATAAAGTACATTTTTGTGTGGATGATCAATGAGAACGGATCTTGTAAACAGATTTAAGATTTAGCTCATTAGTTAATTTCTATATTTTGAATGTAATTATTGATTATCCTTCTGTCAAATATAAGTGTCTATCCCTAAAAGAAATTAAACTTAAGTTTTTCTCTTGAATAGCTATAAATGATGACATGCCATTTTCATGCAAGTGTTAATAAACTCGAATAACACAATGTAAAAACATTAAGTTTAATTACCAAATTCACAAAGATCAGGCTTGGAGAGTGATTCAGCTTTTAATCAATCTTTATCATTATGTAAATTTTCTGTCACGATTTCTTATTCATTGTATTGCACTTTTGGCTTGCTTGGTTTCTGGTTTATTAACGGTTGGTTTTATGGTCAGGGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGTGTGAGTGCCTATTAATTTCTCAACTACACATTGAGTAACTAGTTTTGTTTTATGACTTAATGTGCTTGTTTCACACTTGAATTGACTTCGTTGATAGTCATGCATTCATTTAAGATTGATGTCTGTGACATTCTTTTTGTATCCTATATTACTAGTTATGGTATCGGGAAGAGATTGAGATTTATTAGATGTAGTTACATAAATTGGGACAGAGTGATTGTTAAATTTTTTGACAAAAGAAAAAGATATATGTTATATTAACTTTATGTTTTATATGCCGTCTTTTCTTTGTATGATAGATTCATGATTGGCAGTGTTATGGAATTGATCTGTCCTTCATCCCTTGTATCAAATTCTCAAAATTTTACCACGTCGACGTGTCTGCGAATCATATGCATTTCACATCCATCTTCGTGCTTTCTAAATTGTAATGGATTGAGGAATTCACATTGTATGAACTGTAATACTATAACTTTAACCTCTAGAGAGATGTTATATGTACAAGAAAAGACTTCCTTTCTAGTGATGACCCCGACTTATTAGTGAATCCAAAAGAGTTCCCAATTTCAGTATTGCACCCATATATTAATTTTACGTTACTGAACAATTAAACGCTAGAGCAACAGCATCCAACTTAACCGTACCACTTGAATGCACTAAACATCAGCAACTTGATGTGCATTGAACATGGCTGTTGAGCTGAAGATGTATTTGAATAGAAATTAGTTTTTGCTTTTTCTAGTAGCGGAACATGTATATTTTCTCTTATCCGTCCTATCTTATAGATTTGGGTTCCCAAGAGGTATCACTAATAAGAAAGATTTTAGACAAACCTCCCTTTTTTCTTTCTCACAAATAGGAAGTTCCGATTCCAACTTGGATATTAAAGGGATTACCAGATATGCACATTTTTTCTCGAATTTTACTCTTACCGCTCTGATTTTCTATGCAAGATGTTGTCTAATTAGACCACGAATTATTAATGTATGGTAAAGTTCTATTGCTATTTCACGAGGCAATCCACTTTGATGTAGTGAAAGTGAAGGATCCACGACAATGAATTTTCAAAAACATGATCAGAAAATGAAAAAAAAAAAGATCTTTGGTAAGGACAAAATATATCAAGTTAGTAAAGACTAAAGATTACTGCTTCATTTCTCTTTCTTTGGTCGATGATCATAGAAGCCTTGGCAGTGCAATAGATATCATTTTCTCTGCCTTCCCAACACTTTTCAACTGTGCACCCTTTGATATATATGCGGAGGTCTAACTGCTCCGTCTGATTTTGTGATTCAGGGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATATGTATTCCCTTTCGTTCTCTCTCTCTATTTCTCGTGCATGTAGAAATAGACACCAAAACAAACGCACAGACAAAAAGAGGAGGACAATAGTTGCTCCTCTCGCCATAAATATGTTACCAATTGCACATGCATGATGTACCTACACCGGAAACTTTGTTAACAACTACCACTTCACGTTTCTATCATGCAGGAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAGGTGCATCTTTTTTCTTGTTGATTTCACATTCGACATATATACATGAAAACATCTTTCTGTTTTGAATCTCTTCCATATAATACTCCATGCTCTTCTGGTTGTTTGTTAACAGGGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAA</genome_strand>
        <mrna_strand>GTTTTGTTGATTTTCCATTG-AAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCAAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATGTAACTGTTGGACCTCAGGAGGAAAGGGCGATGCTTTCTGGGATGCACACGGTAGCAGATATATTTTGTTGCTGTTGTGGGCAAATTGTTGGCTGGAAATAT.............................................................................................................................................................................................GAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAG................................................................................................................GGGTAGGATCGTTGACGGAGTTGACACTGAATTCTACATCGATACTCGTCCAACTATCAGTGATACTGAGGATGCATAGGCTTTGTTATGTTATGTATCTATCTAAACATGTGTGATTGTTGTATCTTGCAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTATCTTGTAAGTTTAG-TT--T----GCTAGTATATAAAGAAGGTTATGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597375" ref_strand="-" ref_description="SGN-E597375 [40878]">
      <seq>actcgtccaactatcagtgatactgaggatgcataggctttgttatgttatgtatctatctaaacatgtgtgattgttgtatcttgcaagtctagtttgtagatatagggaagaagctgtttgtatcaaaatattgtgtggttgtatcttgtaagtttagtttgctagtatataaagaaggttatgcataagtttttggtctaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89050" stop="89865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89349" g_stop="89560" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="206" polyA_stop="225"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E597375" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89349" e_stop="89560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAAGTTTTTGGTCTACA</genome_strand>
        <mrna_strand>ACTCGTCCAACTATCAGTGATACTGAGGATGCATAGGCTTTGTTATGTTATGTATCTATCTAAACATGTGTGATTGTTGTATCTTGCAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTATCTTGTAAGTTTAG-TT--T----GCTAGTATATAAAGAAGGTTATGCATAAGTTTTTGGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619964" ref_strand="+" ref_description="SGN-E619964 [70660]">
      <seq>tgtacaaacaaagccaaccattcaagttattgcacaagttcaaaagttaattattaataattctaatcgcataacagatacatgccaatgttcatatacatgtttgcagacacgaatacacatacatacatatagaatgtgtcattgtgtatagatgatagagagagagaacatacagagaacaagcaaagaagaggacgaagagagaggcataattccgagcatagcgtttcacattctcgtgtactctaagccgagcctgagacggcgacgaaggaaatgagtaggaatcaaatgacccgacgaattggagggtccacgatggggtatcatcggaaaagtcatcagaggtgagttttgcaaacggattaagcgttaaaagagacagtaaggttccaatacgtgaaaatatgagaacgaagactccatttgagattgaaaccgcggctgcggcagaattagtaacagcagtgtcggaggaagcggtcgtcgccgccgccgcggcggtggaggtgtggcggtggagatcggtagtccgttgatcgagaatttcgaggtaaccggtatctcggagccaggtttcgaatacgggttcgggtacactcaaagataacgggttagctgagaacgccatttttatttacccttcttcttcaaaggaatctgttctcaggtaatttatctgtnagcgttggtgggaaatcgtatgagcttgtggttttacatggtaggttagaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93329" stop="92006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93029" g_stop="92309" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E619964" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93029" e_stop="92309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAAAACAAAGCCAACCATTCAAGTTATTGCACAAGTTCAAATGTTAATTATTAATAATTGTAATCGCATAAACAGATACATGTCAATGTTCATATACATATTTGCGGACATACTTACACATACATACATATAGAATGTG-CATTGTGTATAGATGATAGAGAGAGAAAACATACAGAGAGCAAGCAAAGAAGAGGACAAAGAGGGAGGCATAATTCCGAGCATAGCGTTTCACATTCTCGTGTACTCTAAGCCGAGCCTGAGACGGCGACGAAGGAAATGAGTAGGAATCGAATGACCCGACGAATTGGAGGGTCCACGACGGGGTATCACCGGAAAAGTCATCAGATGTGAGTTTTGCAAACGGATTAAGCGTTAAAAGCGATAATAAGGTTCCAATACGTGAAAATATTAGAACGAAGACTCCATTTGAAATTGACACCGCGGCTGCAGCAGAATTAGTAACAGCAGCGTCGGAGGAAGCAGTCGTCGCCGCCACGGTGGTGGTGGAGGAGTGGCGGTGGAGATCGGTGGTCCGTTGATCGAGAATTTCGAGGTAGCCAGTATCTCGGAGCCAGGATTCGAATACGGGTTCGGGTACACTCAGAGATAACGGGTTAGCTGAGAACGCCATTTTTGTTTA-CCTTCCTCTTTGAAGGAATTTTTTTTCCAGGTATTTATCTGT-AGCGTTTGGTGGGAAATCTTATGAGCTTTGTGATT</genome_strand>
        <mrna_strand>TGTACAA-ACAAAGCCAACCATTCAAGTTATTGCACAAGTTCAAAAGTTAATTATTAATAATTCTAATCGCAT-AACAGATACATGCCAATGTTCATATACATGTTTGCAGACACGAATACACATACATACATATAGAATGTGTCATTGTGTATAGATGATAGAGAGAGAGAACATACAGAGAACAAGCAAAGAAGAGGACGAAGAGAGAGGCATAATTCCGAGCATAGCGTTTCACATTCTCGTGTACTCTAAGCCGAGCCTGAGACGGCGACGAAGGAAATGAGTAGGAATCAAATGACCCGACGAATTGGAGGGTCCACGATGGGGTATCATCGGAAAAGTCATCAGAGGTGAGTTTTGCAAACGGATTAAGCGTTAAAAGAGACAGTAAGGTTCCAATACGTGAAAATATGAGAACGAAGACTCCATTTGAGATTGAAACCGCGGCTGCGGCAGAATTAGTAACAGCAGTGTCGGAGGAAGCGGTCGTCGCCGCCGCCGCGGCGGTGGAGGTGTGGCGGTGGAGATCGGTAGTCCGTTGATCGAGAATTTCGAGGTAACCGGTATCTCGGAGCCAGGTTTCGAATACGGGTTCGGGTACACTCAAAGATAACGGGTTAGCTGAGAACGCCATTTTTATTTACCCTTCTTCTTCAAAGGAATCTGTTCTCAGGTAATTTATCTGTNAGCG-TTGGTGGGAAATCGTATGAGC-TTGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259511" ref_strand="+" ref_description="SGN-E259511 [cLEG-42-K14]">
      <seq>aaaaatggcgttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggattagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92091" stop="93892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92391" g_stop="92852" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="555" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E259511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92391" e_stop="92852"/>
          <exon e_start="93500" e_stop="93592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCA</genome_strand>
        <mrna_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368320" ref_strand="+" ref_description="SGN-E368320 [TUS-26-M16]">
      <seq>aaaaatggcgttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92091" stop="93864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92391" g_stop="92852" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93564" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="527" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E368320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92391" e_stop="92852"/>
          <exon e_start="93500" e_stop="93564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGT</genome_strand>
        <mrna_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255962" ref_strand="+" ref_description="SGN-E255962 [cLEG-35-C8]">
      <seq>aaaaatggcgttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92091" stop="93152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92391" g_stop="92852" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E255962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92391" e_stop="92852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT</genome_strand>
        <mrna_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311695" ref_strand="+" ref_description="SGN-E311695 [cLEZ-9-J4]">
      <seq>ttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggattagagcaccggccagttatcaaacaaagcttgattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92101" stop="93924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92401" g_stop="92852" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93624" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="577" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E311695" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92401" e_stop="92852"/>
          <exon e_start="93500" e_stop="93624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCA</genome_strand>
        <mrna_strand>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGGCCAGTTATCAAACAAAGCTTGATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313660" ref_strand="+" ref_description="SGN-E313660 [cTOA-12-B22]">
      <seq>ttctcattttacccgttatctctgagtgggcccgaacgcggtattctaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccgccgcggggaccctgcaatttggcaggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtccttttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92101" stop="93854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92401" g_stop="92852" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93554" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="508" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E313660" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92401" e_stop="92852"/>
          <exon e_start="93500" e_stop="93554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAAC-CCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGAT</genome_strand>
        <mrna_strand>TTCTCATTTTACCCGTTATCTCTGAGTGGGCCCGAACGCGGTATTCTAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCGCCGCGGGGACCCTGCAATTTGGCAGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTTTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415735" ref_strand="+" ref_description="SGN-E415735 [STM-21-H20]">
      <seq>ctcagctaacccgttatctctgagtgtacccgaacccgtattcgaaacctggctccgagataccggttacctcgaaattctcgatcaacggactaccgatctccaccgccactcctcctccaccgccgcggcggcgacgaccgcttcctccgacacttctgttactaattctgccgcagccgcggtttcaatctcaaatggagtcttcgttctcatattttcacgtattggaaccttactgtcgcttttaacgcttaatccgtttgcaaaactcacctctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctctctcttcgtcctcttctttgcttgttctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92103" stop="93951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92403" g_stop="92852" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93638" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="589" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E415735" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92403" e_stop="92852"/>
          <exon e_start="93500" e_stop="93638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGT</genome_strand>
        <mrna_strand>CTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAAACCTGGCTCCGAGATACCGGTTACCTCGAAATTCTCGATCAACGGACTACCGATCTCCACCGCCACTCCTCCTCCACCGCCGCGGCGGCGACGACCGCTTCCTCCGACACTTCTGTTACTAATTCTGCCGCAGCCGCGGTTTCAATCTCAAATGGAGTCTTCGTTCTCATATTTTCACGTATTGGAACCTTACTGTCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACCTCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCTCTCTTCGTCCTCTTCTTTGCTTGTTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314759" ref_strand="+" ref_description="SGN-E314759 [cTOA-20-K22]">
      <seq>tcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggaatagagcaccgcccagttatcaacaaagcttgattcgcattgctcagtgtgctactgcagttattctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92104" stop="97026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92404" g_stop="92852" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93644" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="592" r_length="143" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93740" g_stop="93751" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="604" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E314759" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92404" e_stop="92852"/>
          <exon e_start="93500" e_stop="93644"/>
          <exon e_start="93740" e_stop="93751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGT</genome_strand>
        <mrna_strand>TCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGAATAGAGCACCGCCCAGTTATC-AACAAAGCTTGATTCGCATTGCTCAGTGTGCT-ACTGC...............................................................................................AGTTATTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457788" ref_strand="+" ref_description="SGN-E457788 [cPRO-3-B2]">
      <seq>cgttatctttgagtgtacccgaacccgtattcgaaacctggctccgagataccggttacctcgaaattctcgatcaacggactaccgatctccaccgccacacctccaccgccgcggcggcggcgacgaccgcttcctccgacactgctgttactaattctgccgcagccgcggtttcaatctcaaatggagtcttcgttctcatattttcacgtattggaaccttactgtctcttttaacgcttaatccgtttgcaaaactcacctctgatgacttttccgatgataccccatcgtggaccctccaattcgtcgggtcatttgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctctctcttcgtcctcttctttgcttgttctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92114" stop="97209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92414" g_stop="92852" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93636" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="576" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="648" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96875" g_stop="96909" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="683" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E457788" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92414" e_stop="92852"/>
          <exon e_start="93500" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACC</genome_strand>
        <mrna_strand>CGTTATCTTTGAGTGTACCCGAACCCGTATTCGAAACCTGGCTCCGAGATACCGGTTACCTCGAAATTCTCGATCAACGGACTACCGATCTCCACCGCCACACCTCCACCGCCGCGGCGGCGGCGACGACCGCTTCCTCCGACACTGCTGTTACTAATTCTGCCGCAGCCGCGGTTTCAATCTCAAATGGAGTCTTCGTTCTCATATTTTCACGTATTGGAACCTTACTGTCTCTTTTAACGCTTAATCCGTTTGCAAAACTCACCTCTGATGACTTTTCCGATGATACCCCATCGTGGACCCTCCAATTCGTCGGGTCATTTGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCTCTCTTCGTCCTCTTCTTTGCTTGTTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313663" ref_strand="+" ref_description="SGN-E313663 [cTOA-12-D20]">
      <seq>cgttatctctgagtgggcccgaacgggtgttcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgaccactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgatctaatatttgcacgtattggaaccttattatcgctttgaacgcttaatccgtttgcaaaactcacatctgatgacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92114" stop="92993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92414" g_stop="92693" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E313663" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92414" e_stop="92693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTC</genome_strand>
        <mrna_strand>CGTTATCTCTGAGTGGGCCCGAACGGGTGTTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACCACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGATCTAATATTTGCACGTATTGGAACCTTATTATCGCTTTGAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457712" ref_strand="+" ref_description="SGN-E457712 [cPRO-3-B21]">
      <seq>ttatctctgagtgtacccgaacccgtattcgagacctggctccgagataccggatacctcgaaattctcgatcagcggactaccgatctccaccgccactcctccaccaccgcggcggcggcgacgaccgctacctccgacactgctgttactaattctgccgcagccgcgggttcaatctcaaatggagtcttcgttctcatattttcacgtattggaaccttactgtcgcttttaacgcttaatccgtatgcaaaactcacctctgatgacttttccggagataccccgtcgtggaccctccaattggacgggtcattcgattcctactcatttccttcgtcgccgtctcagggtcggcttacagtacacgagaatgcgatacgctatgctcggaattatgcctctctcttcggcctcttctttgcttggtctctgaaccaaaagctgtttgcccttggtggggtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92116" stop="93834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92416" g_stop="92852" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93534" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="472" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E457712" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92416" e_stop="92852"/>
          <exon e_start="93500" e_stop="93534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATAT</genome_strand>
        <mrna_strand>TTATCTCTGAGTGTACCCGAACCCGTATTCGAGACCTGGCTCCGAGATACCGGATACCTCGAAATTCTCGATCAGCGGACTACCGATCTCCACCGCCACTCCTCCACCACCGCGGCGGCGGCGACGACCGCTACCTCCGACACTGCTGTTACTAATTCTGCCGCAGCCGCGGGTTCAATCTCAAATGGAGTCTTCGTTCTCATATTTTCACGTATTGGAACCTTACTGTCGCTTTTAACGCTTAATCCGTATGCAAAACTCACCTCTGATGACTTTTCCGGAGATACCCCGTCGTGGACCCTCCAATTGGACGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGGTCGGCTTACAGTACACGAGAATGCGATACGCTATGCTCGGAATTATGCCTCTCTCTTCGGCCTCTTCTTTGCTTGGTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAAAAGCTGTTTGCCCTTGGTGGGGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313664" ref_strand="+" ref_description="SGN-E313664 [cTOA-12-D22]">
      <seq>ttatctctgagtgtgcccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggcgtcaatttcaaatggagtcttcgctctaatattttcacgtgtgggaaccttattatcggttttaacgcttaatccgtctgcaaaactcacatctgatgacttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92116" stop="92994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92416" g_stop="92694" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E313664" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92416" e_stop="92694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCC</genome_strand>
        <mrna_strand>TTATCTCTGAGTGTGCCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGCGTCAATTTCAAATGGAGTCTTCGCTCTAATATTTTCACGTGTGGGAACCTTATTATCGGTTTTAACGCTTAATCCGTCTGCAAAACTCACATCTGATGACTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269831" ref_strand="+" ref_description="SGN-E269831 [cLEM-17-G20]">
      <seq>gaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaagctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92146" stop="93876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92446" g_stop="92852" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93576" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="484" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E269831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92446" e_stop="92852"/>
          <exon e_start="93500" e_stop="93576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATC</genome_strand>
        <mrna_strand>GAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAAGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583323" ref_strand="+" ref_description="SGN-E583323 [9144]">
      <seq>accggttacctcgaaattctcgatcaacggactaccgatctccaccgccacacctccaccgccgcggcggcggcgacgaccgcttcctccgacactgctgttactaattctgccgcagccgcggtttcaatctcaaatggagtcttcgttctcatattttcacgtattggaaccttactgtctcttttaacgcttaatccgtttgcaaaactcacctctgatgacttttccgatgataccccatcgtggaccctccaattcgtcgggtcatttgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctctctcttcgtcctcttctttgcttgttctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagtttgtcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatggctcatttaggaagctgacccctcgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92164" stop="97220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92464" g_stop="92852" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93636" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="527" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="599" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96875" g_stop="96920" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="644" r_length="45" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E583323" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92464" e_stop="92852"/>
          <exon e_start="93500" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="96920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAG-TTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACA</genome_strand>
        <mrna_strand>ACCGGTTACCTCGAAATTCTCGATCAACGGACTACCGATCTCCACCGCCACACCTCCACCGCCGCGGCGGCGGCGACGACCGCTTCCTCCGACACTGCTGTTACTAATTCTGCCGCAGCCGCGGTTTCAATCTCAAATGGAGTCTTCGTTCTCATATTTTCACGTATTGGAACCTTACTGTCTCTTTTAACGCTTAATCCGTTTGCAAAACTCACCTCTGATGACTTTTCCGATGATACCCCATCGTGGACCCTCCAATTCGTCGGGTCATTTGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCTCTCTTCGTCCTCTTCTTTGCTTGTTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTTGTCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGGCTCATTTAGGAAGCTGA-CCCCTCGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420281" ref_strand="+" ref_description="SGN-E420281 [STM-31-A15]">
      <seq>gctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgaccccctcgaaacaatcaacttcaaaagatggaaacaggagggtcctgagaagttgatgagtggttattattgtcaagtcatacaaccacatagtcgtcgcctggagagagggtaaaccgtgtttacaaactatagcatacgagtcttggttcatgagtacatctctcggtttgaactcagaaaattcttcgagttacaatgtaagaaaagctttcttcttcttcttattttaagtttaggttgtatgtataagtctatacaatggagaaaaaaagactagataagattgtagatgggtgtagaaccctaaagagaattggcactgctaaggctttgttattttgctatatgaattagtattagtaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93209" stop="97575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93509" g_stop="93636" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="200" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96875" g_stop="97285" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="613" r_length="413" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E420281" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93509" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="97285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTC-TGGCTCATGAGTGCATCTCTCCATATGAA-ACGGAGAATTCTTCGAGTCACAATGTAAGAAAAG-TTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTAGTAACACATTTATTAATC</genome_strand>
        <mrna_strand>GCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCGAAACAATCAACTTCAAAAGATGGAAACAGGAGGGTCCTGAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAACCACATAGTCGTCGCCTGGAGAGAGGGTAAACCGTGTTTACAAACTATAGCATACGAGTCTTGGTTCATGAGTACATCTCTCGGTTTGAACTCAGAAAATTCTTCGAGTTACAATGTAAGAAAAGCTTTCTTCTTCTTCTTATTTTAAGTTTAGGTTGTATGTATAAGTCTATACAAT-GGAGAAAAAAAGACTAGATAAGATTGTAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTATTTTGCTATATGAATTAGTATTAGTAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406011" ref_strand="+" ref_description="SGN-E406011 [PPI-2-K18]">
      <seq>gctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgaccccctcgaaacaatcaacttcaaaagatggaaacaggagggtcctgagaagttgatgagtggttattattgtcaagtcatacaaccacatagtcgtcgcctggagagagggtaaaccgtgtttacaaactatagcatacgagtcttggttcatgagtacatctctcggtttgaactcagaaaattcttcgagttacaatgtaagaaaagctttcttcttcttcttattttaagtttaggttgtatgtataagtctatacaatggagaaaaaaagactagataagattgtagatgggtgtagaaccctaaagagaattggcactgctaaggctttgttattttgctatatgaattagtatttagtacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93209" stop="97575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93509" g_stop="93636" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="200" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96875" g_stop="97267" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="595" r_length="395" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="615"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E406011" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93509" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="97267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTC-TGGCTCATGAGTGCATCTCTCCATATGAA-ACGGAGAATTCTTCGAGTCACAATGTAAGAAAAG-TTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTA</genome_strand>
        <mrna_strand>GCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCGAAACAATCAACTTCAAAAGATGGAAACAGGAGGGTCCTGAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAACCACATAGTCGTCGCCTGGAGAGAGGGTAAACCGTGTTTACAAACTATAGCATACGAGTCTTGGTTCATGAGTACATCTCTCGGTTTGAACTCAGAAAATTCTTCGAGTTACAATGTAAGAAAAGCTTTCTTCTTCTTCTTATTTTAAGTTTAGGTTGTATGTATAAGTCTATACAAT-GGAGAAAAAAAGACTAGATAAGATTGTAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTATTTTGCTATATGAATTAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588580" ref_strand="-" ref_description="SGN-E588580 [42136]">
      <seq>atatcatgtttagcactttgggatgtattaaagttatgtggcgatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgaccccctcgaaacaatcaacttcaaaagatggaaacaggagggtcctgagaagttgatgagtggttattattgtcaagtcatacaaccacatagtcgtcgcctggagagagggtaaaccgtgtttacaaactatagcatacgagtcttggttcatgagtacatctctcggtttgaactcagaaaattcttcgagttacaatgtaagaaaagctttcttcttcttcttattttaagtttaggttgtatgtataagtctatacaatggagaaaaaaagactagataagattgtagatgggtgtagaaccctaaagagaattggcactgctaaggctttgttattttgctatatgaattagtattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93231" stop="97569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93531" g_stop="93636" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="178" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96875" g_stop="97269" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="575" r_length="397" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E588580" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588580" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93531" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="97269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTC-TGGCTCATGAGTGCATCTCTCCATATGAA-ACGGAGAATTCTTCGAGTCACAATGTAAGAAAAG-TTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTAGT</genome_strand>
        <mrna_strand>ATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGCGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCGAAACAATCAACTTCAAAAGATGGAAACAGGAGGGTCCTGAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAACCACATAGTCGTCGCCTGGAGAGAGGGTAAACCGTGTTTACAAACTATAGCATACGAGTCTTGGTTCATGAGTACATCTCTCGGTTTGAACTCAGAAAATTCTTCGAGTTACAATGTAAGAAAAGCTTTCTTCTTCTTCTTATTTTAAGTTTAGGTTGTATGTATAAGTCTATACAAT-GGAGAAAAAAAGACTAGATAAGATTGTAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTATTTTGCTATATGAATTAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368319" ref_strand="+" ref_description="SGN-E368319 [TUS-26-M16](-)">
      <seq>cgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaacgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgaccccctcaaaacaatcaacttcaaaagaagtgaacaggagggtccttagaagttgatgagtggttattattgtcaagtcatacaatcacatagtcgttgcctggagagagggttaaccgtgtttacaaactatagcattcgagtctggctcatgagtgcatctctccatatgaaacggagaattcttcgagtcacaatgtaagaaaagtttcttctttaatttgatttttttttaggatgtgtgtatgtgtctgtacaatgggaaaaaaaaagactagataagatttcagatgggtgtagaaccctaaagagaattggcactgctaaggctttgttcttttactatatgaattagtattagtaacacatttattaatctttgactgaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93294" stop="97598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93594" g_stop="93636" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="115" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96875" g_stop="97297" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="538" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E368319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93594" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="97297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTCTGGCTCATGAGTGCATCTCTCCATATGAAACGGAGAATTCTTCGAGTCACAATGTAAGAAAAGTTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTAGTAACACATTTATTAATCTTTGACTGAATA</genome_strand>
        <mrna_strand>CGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTCTGGCTCATGAGTGCATCTCTCCATATGAAACGGAGAATTCTTCGAGTCACAATGTAAGAAAAGTTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTAGTAACACATTTATTAATCTTTGACTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259615" ref_strand="-" ref_description="SGN-E259615 [cLEG-42-E13]">
      <seq>taaaaaaaaaagggaagttgaaactagaaactaatatgataattatagtgaaggagtactgagtaggattgtacaatattaaaggtttaacgaatttattgaaccatatattaaaaaaaataatttatcgaaacatcaacattaaaggtttaacgaatttattgaaccatatattgaaaaaaccaatttatcgaaacatcaacctatttttttttagaagacccaccggaatttaggctttcgagtttttcaaattcttttgtttgtcatagtccacaaaattgtttggcatttgaaaaggttgttcacaacattggaactatgatcatggaaaaactactaaaaaacacatctaatatttttattatttttaatatttcattttatttttgaaaatctttaatacttcttatttctttaatgtattcgagccagtatttactgtaattgaattacatattatgtatttgatttattttatctggtccattttataatgtattcgagctacatattatgtatttaatttatattataatgtattcgagatactctttaatgtatctgagctacaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102632" stop="53264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102334" g_stop="101754" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101753" i_stop="99456" i_length="2298">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99455" g_stop="99431" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="606" r_length="25" r_score="0.520"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E259615" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102334" e_stop="101754"/>
          <exon e_start="99455" e_stop="99431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACATATTAATGTATCTGATTTGTGTTACTTTTTAAGGCATTAATACAATTACAAACTAAAGAGAGACATATTGTAATTTCATCTTAAAACTATATGACCTAAAAGTTATCCTTTGATTATTCTCCTATATACATAAAAAGTTTTTTACTCTAGCTACAGTGTAATTTTCCGATGAAGAGGCATCCGTCGATACCCCTCTACATGTGGTTCCACCATTGCCCACATCTTGAAATGTTCTTTATGAATATCCCCAAAGTTTATGGAATATTCGAGATTTTCTTGAGAAAGACAATACGTGATGTCTTCATGCTCTCTTGTGAAAATCCATGGGTTATAAAATATTCGAGATGTCTGTCTTTTTTAAGGAAATATATTACCTTTTAAATAGATATAAACTAGAACTTAGTGTAGAGTAATCTTTAAATAAAAAAATATTTTGAAATTGATCTAAATAAAATTAATTTATCTAAATATTAGTGCATGCCTTTTATGGCCTTGATTTGTATAAAAGAAATAATTGTACAAACATGGTAGTTTGGCTTGCTTACGTGTTTTTCTAGCTCAAGTTATTTTCTAAGAGTTTTTAAGTTGAGTGACTTCACACCGACAAAAAGTAGTTTTTATTTTTTTATTTTTATATAGATAAAAAACTCTAAATTTGATTAATATTTGAGAAATTAACTCACAGAAATTTAACTACTCTATGTTTTTCATATCCTTCAAAATTTTCTTTTGAATGTATACCAATTTTTTTAAGAATTATGTATTTTTTAGAATTCGAATGGAGTGTGACAATATAGTCAATGGATCTAACCAAATATAGTTAATAATGACTACTAGGTATGCATTTCATCATCATAGTGAATAAAGTGCAAATATTTTTTTTATAAGAATACATTTAGGATGAGGTTTTTCTCAAAAGAGTTAAAGATTGCAATAGCACACAATAAATATTTTAAACTAGAAGTAAATGAAGAACAATATTACTTGTATGAGCATAATATATAGTTGCATTATCTCATTGCCTCTTCTTTCATTGTGGCTTGCTTTCTTCTTTCTCTTTTGGTTTTTCTTCTTCTACCTTCTTATCTTTAGGTTTTGCTTCTTCAACTTTGGCTTTAGGTTTTGCTTCTTCTTTGGCTTTTGGTTTTCCTTTTTGGGGCTTCATGAAACAAAAACAAGAACAACATGGACATTGGAACAAGAACTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACCTCCCCCTTCTACTTGTGTTATATAAATAAGTAAGAACTACTAGTATAGTTGTTTGGGATTAGACAGTCTGGTGTATAAAGTATCTCGCGTTTACGTAAGGGTCAAAAAATGTTAGTTATTTCGAATTAGACGTACAAAACATTTCATGTTCACATAGTGTTAAAAAAATATTGCATCTTAAGGGGTGATATAAATATATATAGTCTATCTTAATGTAAGCAATAGTGACCACTTTCACAAAGACGTTTAGTTTTATGAATGATTATTGAACTTTGTAATTATCACACTAAAGTCATAAATTATCGTTTATGATGAAAAAAAATCAAATTAGGTGATTAAAGTATCAAGAAAATTACTTAACTTCATTAAGTATCATTGAAAGTCATTAGGAGAAGAAAGCAAAAGAGAAATTTAATTAGATGAGTGACTTTATGTGATAAATATAATTGAGTGATTGTTTGCTTTTTAAAAAAAAAAAAGTTTACTGATTCTCTGTTGATATTAAAATAAAGTTGAATATTTTTTTTATCACCACAAATAATTTTTTTAACCTTAGTGTAATAAAATAAAAGTTGAGTAATCACATGTGAAACTAATACAACCCAAGATTAAATTAGTCCACTATATGTTTGTGTATAAAAAAATGATGTGCTTTAGTTATAGCTTTTCTTTTTGTTATTTTTGTTCAATTATTTGTTTTCTTTGTTGAAATTTTATCATTAATGCTGCAATAATTCTTTCACATATTCCATTTCAATCACTTTCAATAATGAATATGTCTATAGCAAAAGAACGTGAAGTGGGGCATCCTAAGTTTTCGTTATATACGGTGTCGTGACGGATTTAAAATTTAAATTTTGAATCGTAAACTTCTAACCTATTTTATGTTATTGGATTCACAATTCATTATTGGTACACTTAATTTGCGAATTTCTAAATATTTATATATGATTTGAATTAATGTTACTGAATTCTATCCAATACGTATAATAGAGTGTATGTTGTATGTGATACCGTGAAAAACATATATTCATATTTGGTAATTCAATTTTTTTAGGAAAAATAAGTTTGTTTGTTTTTTT</genome_strand>
        <mrna_strand>TAAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335449" ref_strand="+" ref_description="SGN-E335449 [cTOE-2-L20]">
      <seq>gagaatgaagttcttgtgccaatgtccatgtcgatcttgattctgtgttcatgaagccccaataaggaaaaccaaaagccaaagaagaagcaaaacctaaagccaaagttgaagaagcaaaacctaaagataagaaggtagaagaagaaaaaccaaaagagaaagaagaaagcaagccacaatgaaagaagaggcaatgagataatgcaactatatattatgctcatacaagtaatattgttcttcatttacttctagtttaaaatatttattgtgtgctattgcaatctttaactcttttgagaaaaacctcatcctaaatgtattcttataaaaaaaatatttgcactttattcactatgatgatgaaatgcatacctagtagtcattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100247" stop="101245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100547" g_stop="100950" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E335449" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100547" e_stop="100950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGT-TTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</genome_strand>
        <mrna_strand>GAGAATGAAGTTCTTGTGCCAATGTCCATGTCGATCTTGATTCTGTGTTCATGAAGCCCCAATAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257721" ref_strand="+" ref_description="SGN-E257721 [cLEG-39-H19]">
      <seq>gttttttttttttttttttgtagctcagatacattaaagagtatctcgaatacattataatataaattaaatacataatatgtagctcgaatacattataaaatggaccagataaaataaatcaaatacataatatgtaattcaattacagtaaatactggctcgaatacattaaagaaataagaagtattaaagattttcaaaaataaaatgaaatattaaaaataataaaaatattagatgtgttttttagtagtttttccatgatcatagttccaatgttgtgaacaaccttttcaaatgccaaacaattttgtggactatgacaaacaaaagaatttgaaaaactcgaaagcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76535" stop="102402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101067" g_stop="101077" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101078" i_stop="101753" i_length="676">
            <donor d_prob="0.704" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101754" g_stop="102102" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="360" r_length="349" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E257721" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101067" e_stop="101077"/>
          <exon e_start="101754" e_stop="102102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAATTTCTGTGAGTTAATTTCTCAAATATTAATCAAATTTAGAGTTTTTTATCTATATAAAAATAAAAAAATAAAAACTACTTTTTGTCGGTGTGAAGTCACTCAACTTAAAAACTCTTAGAAAATAACTTGAGCTAGAAAAACACGTAAGCAAGCCAAACTACCATGTTTGTACAATTATTTCTTTTATACAAATCAAGGCCATAAAAGGCATGCACTAATATTTAGATAAATTAATTTTATTTAGATCAATTTCAAAATATTTTTTTATTTAAAGATTACTCTACACTAAGTTCTAGTTTATATCTATTTAAAAGGTAATATATTTCCTTAAAAAAGACAGACATCTCGAATATTTTATAACCCATGGATTTTCACAAGAGAGCATGAAGACATCACGTATTGTCTTTCTCAAGAAAATCTCGAATATTCCATAAACTTTGGGGATATTCATAAAGAACATTTCAAGATGTGGGCAATGGTGGAACCACATGTAGAGGGGTATCGACGGATGCCTCTTCATCGGAAAATTACACTGTAGCTAGAGTAAAAAACTTTTTATGTATATAGGAGAATAATCAAAGGATAACTTTTAGGTCATATAGTTTTAAGATGAAATTACAATATGTCTCTCTTTAGTTTGTAATTGTATTAATGCCTTAAAAAGTAACACAAATCAGATACATTAATATGTAGCTCAGATACATTAAAGAGTATCTCGAATACATTATAATATAAATTAAATACATAATATGTAGCTCGAATACATTATAAAATGGACCAGATAAAATAAATCAAATACATAATATGTAATTCAATTACAGTAAATACTGGCTCGAATACATTAAAGAAATAAGAAGTATTAAAGATTTTCAAAAATAAAATGAAATATTAAAAATAATAAAAATATTAGATGTGTTTTTTAGTAGTTTTTCCATGATCATAGTTCCAATGTTGTGAACAACCTTTTCAAATGCCAAACAATTTTGTGGACTATGACAAACAAAAGAATTTGAAAAACTCGAAAGCCTAA</genome_strand>
        <mrna_strand>GTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTGTAGCTCAGATACATTAAAGAGTATCTCGAATACATTATAATATAAATTAAATACATAATATGTAGCTCGAATACATTATAAAATGGACCAGATAAAATAAATCAAATACATAATATGTAATTCAATTACAGTAAATACTGGCTCGAATACATTAAAGAAATAAGAAGTATTAAAGATTTTCAAAAATAAAATGAAATATTAAAAATAATAAAAATATTAGATGTGTTTTTTAGTAGTTTTTCCATGATCATAGTTCCAATGTTGTGAACAACCTTTTCAAATGCCAAACAATTTTGTGGACTATGACAAACAAAAGAATTTGAAAAACTCGAAAGCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368232" ref_strand="+" ref_description="SGN-E368232 [TUS-26-K4](-)">
      <seq>aattcggttaaacctttaatattgtacaatcctactcaagtactccttcactataaattatcatattagtttctagtttcaacttcccttttttttttatggactctgtccattcatgaatctatctattattattgtacatctctttctcttagcctttgttcttaaaagtaatcttctttaaccacaccccggatttggttattcatagtttttttctcagaacatttaacctgacaatgtcctaggaatttacaggttaatccatcgatacttttaagaagctaagagactaaccatatactaagtaatatagattcatgatgatattcataaatttacatgaatttatcaaataattaacattttataaacacacataatttacatatatgggaagtttactagaaacataaatatgaaaacttacattatttagaacagagtgaagtttccctttcggaaaacccgaaaagcttccaaacttttacttaaaacaaacttttagaataaagaactgaaatctttattacaatcttttaaaagataattttaaagagaaaaggggttgttttgaggattttgagagagtttttgttgtggttgtcttagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101939" stop="103149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102239" g_stop="102852" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E368232" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102239" e_stop="102852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCG-TTAAACCTTTAATATTGTACAATCCTACTC-AGTACTCCTTCACTAT-AATTATCATATTAGTTTCTAGTTTCAACTTCCCT-TTTTTTTTATGGACTCTGTCCATTCATGAATCTATCTATTATTATTGTACATCTCTTTCTCTTAGCCTTTGTTCTTAAAAGTAATCTTCTTTAACCACACCCCGGATTTGGTTATTCATAGTTTTTTTCTCAGAACATTTAACCTGACAATGTCCTAGGAATTTACAGGTTAATCCATCGATACTTTTAAGAAGCTAAGAGACTAACCATATACTAAGTAATATAGATTCATGATGATATTCATAAATTTACATGAATTTATCAAATAATTAACATTTTATAAACACACATAATTTACATATATGGGAAGTTTACTAGAAACATAAATATGAAAACTTACATTATTTAGAACAGAGTGAAGTTTCCCTTTCGGAAAACCCGAAAAGCTTCCAAACTTTTACTTAAAACAAACTTTTAGAATAAAGAACTGAAATCTTTATTACAATCTTTTAAAAGATAATTTTAAAGAGAAAAGGGGTTGTTTTGAGGATTTTGAGAGAGTTTTTGTTGTGGTTGTCTTAGACTTTT</genome_strand>
        <mrna_strand>AATTCGGTTAAACCTTTAATATTGTACAATCCTACTCAAGTACTCCTTCACTATAAATTATCATATTAGTTTCTAGTTTCAACTTCCCTTTTTTTTTTATGGACTCTGTCCATTCATGAATCTATCTATTATTATTGTACATCTCTTTCTCTTAGCCTTTGTTCTTAAAAGTAATCTTCTTTAACCACACCCCGGATTTGGTTATTCATAGTTTTTTTCTCAGAACATTTAACCTGACAATGTCCTAGGAATTTACAGGTTAATCCATCGATACTTTTAAGAAGCTAAGAGACTAACCATATACTAAGTAATATAGATTCATGATGATATTCATAAATTTACATGAATTTATCAAATAATTAACATTTTATAAACACACATAATTTACATATATGGGAAGTTTACTAGAAACATAAATATGAAAACTTACATTATTTAGAACAGAGTGAAGTTTCCCTTTCGGAAAACCCGAAAAGCTTCCAAACTTTTACTTAAAACAAACTTTTAGAATAAAGAACTGAAATCTTTATTACAATCTTTTAAAAGATAATTTTAAAGAGAAAAGGGGTTGTTTTGAGGATTTTGAGAGAGTTTTTGTTGTGGTTGTCTTAGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350480" ref_strand="-" ref_description="SGN-E350480 [cTOS-5-E1]">
      <seq>ttttttttttgttttttttttaaaaaaagatattataacaactaatacaatcttggtcgtgctcagcacgggcaacctttgctagtaacttagaaacgagggtacataaccaactatatcgatcaaattacaacaacaacaacaacatactccacgtaatccacaagtgggtcaggggagagtaaactgtatgcaaaccttacttctaccttctagaggtagagaggttgtttctgatagaccctaggttcaaggaaaaacatatcaaagcagctaatcatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="72950" stop="109953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109233" g_stop="109251" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.737"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109252" i_stop="109386" i_length="135">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109387" g_stop="109653" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="286" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E350480" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109233" e_stop="109251"/>
          <exon e_start="109387" e_stop="109653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTTTTATTTTCTGTAACACTCTTTTAAGTGGGTTCTTCTTCCTCTTTTTCTTTTTTGGCTTAATTTTTCATTTTGAGTGGGAATGCTGAATGCTGATCTATATGTGCTTGGACGTGTGAACTAAAAACTACTGAGAAACAAATTCAGCTAAAAAAAGATATTATAACAACTAATACAATCTTGGTCGTGCTCAGCACGGGCAACCTTTGCTAGTAACTTAGAAACGAGGGTACATAACCAACTATATCGATCAAATTACAACAACAACAACAACATACTCCACGTAATCCACAAGTGGGTCAGGGGAGAGTAAACTGTATGCAAACCTTACTTCTACCTTCTAGAGGTAGAGAGGTTGTTTCTGATAGACCCTAGGTTCAAGGAAAAACATATCAAAGCAGCTAATCATGGAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTGTTTTTTTT.......................................................................................................................................TTAAAAAAAGATATTATAACAACTAATACAATCTTGGTCGTGCTCAGCACGGGCAACCTTTGCTAGTAACTTAGAAACGAGGGTACATAACCAACTATATCGATCAAATTACAACAACAACAACAACATACTCCACGTAATCCACAAGTGGGTCAGGGGAGAGTAAACTGTATGCAAACCTTACTTCTACCTTCTAGAGGTAGAGAGGTTGTTTCTGATAGACCCTAGGTTCAAGGAAAAACATATCAAAGCAGCTAATCATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349502" ref_strand="+" ref_description="SGN-E349502 [cTOS-1-K23]">
      <seq>tattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaggatttggaaatggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggccaaaaagttatagtgaaagcagaggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttctaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="110265" stop="109082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109965" g_stop="109383" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="594"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E349502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109965" e_stop="109383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374659" ref_strand="+" ref_description="SGN-E374659 [TUS-15-N1](-)">
      <seq>tggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggcctaaaagttatagtgtaaacataggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttttaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="110183" stop="109082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109883" g_stop="109383" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E374659" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109883" e_stop="109383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCTAAAAGTTATAGTGTAAACATAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTTTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429636" ref_strand="+" ref_description="SGN-E429636 [STM-52-K14]">
      <seq>tcgagtttttttctcttttttttaagaaccaactttattgatcaaattacaataacaataacatactccacgtaatccataagtggggttaggggagagtaaagtgtacgcaaaccttacccctaccttgtagaggtagagaggttgtttctgatagaccctcggctcaaggaaaaacatatcaaagcagctaatcattgagtattctccatgatagtctggatgaaacctccaatagaagtgtaagaagagccaccttccatggttgttgctctgctcttctccttcatctcctttactttcatccgtattttattttcagggtccataagttcccttattgctttctcaatctcctctgctttcactataacttcttggcccatcgtccctgtcggttctttcctgtaatccatcttaatctcgactgccatttccaaatctttaaccaactgaaatgcatttgcttgctgctctgcgtacattggccaagtagccattggcactccaaaatagatgctttccaaagtcgaattccatccacagtgcgacacaaagccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="109200" stop="110313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109473" g_stop="110013" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="563" r_length="539" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-E429636" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109473" e_stop="110013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAACTATATCGATCAAATTACAACAACAACAACAACATACTCCACGTAATCCACAAGT-GGGTCAGGGGAGAGTAAACTGTATGCAAACCTTACTTCTACCTTCTAGAGGTAGAGAGGTTGTTTCTGATAGACCCTAGGTTCAAGGAAAAACATATCAAAGCAGCTAATCATGGAGTATTCTCCATGATACTCTGGATGAAACTTCCAATAGAAGTGTAAGAAGAGCCTCCTTCCGTGGTTGCTGCTCTGCTCTTCTCTTTCATCTCCTTCACTTTCATCCGAATTTTATTTTCAGGGTCCATAAGTTCTCTTATTGCTTTCTCAATCTCCTCTGCTTTCACTATAACTTTTTGGCCCATCTTCCCTGTTGGTTCCTTCCTGTAATCCATCTTTAGCTCGACTGCCATTTCCAAATCCTTAACCAACTGAAATGCATTTGCTTGCTGCTCTGCGTACATTGGCCAAGTAGCCATTGGCACTCCAAAATAGGTGCTTTCCAAAGTCGAATTCCATCCACAGTGCGACACAAAGCCACC</genome_strand>
        <mrna_strand>AGAACCAACTTTATTGATCAAATTACAATA--A-CAATAACATACTCCACGTAATCCATAAGTGGGGTTAGGGGAGAGTAAAGTGTACGCAAACCTTACCCCTACCTTGTAGAGGTAGAGAGGTTGTTTCTGATAGACCCTCGGCTCAAGGAAAAACATATCAAAGCAGCTAATCATTGAGTATTCTCCATGATAGTCTGGATGAAACCTCCAATAGAAGTGTAAGAAGAGCCACCTTCCATGGTTGTTGCTCTGCTCTTCTCCTTCATCTCCTTTACTTTCATCCGTATTTTATTTTCAGGGTCCATAAGTTCCCTTATTGCTTTCTCAATCTCCTCTGCTTTCACTATAACTTCTTGGCCCATCGTCCCTGTCGGTTCTTTCCTGTAATCCATCTTAATCTCGACTGCCATTTCCAAATCTTTAACCAACTGAAATGCATTTGCTTGCTGCTCTGCGTACATTGGCCAAGTAGCCATTGGCACTCCAAAATAGATGCTTTCCAAAGTCGAATTCCATCCACAGTGCGACACAAAGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429635" ref_strand="+" ref_description="SGN-E429635 [STM-52-K14]">
      <seq>ggtggctttgtgtcgcactgtggatggaattcgactttggaaagcatctattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaagatttggaaatggcagtcgagattaagatggattacaggaaagaaccgacagggacgatgggccaagaagttatagtgaaagcagaggagattgagaaagcaataagggaacttatggaccctgaaaataaaatacggatgaaagtaaaggagatgaaggagaagagcagagcaacaaccatggaaggtggctcttcttacacttctattggaggtttcatccagactatcatggagaatactcaatgattagctgctttgatatgtttttccttgagccgagggtctatcagaaacaacctctctacctctacaaggtaggggtaaggtttgcgtacactttactctcccctaaccccacttatggattacgtggagtatgttattgttattgtaatttgatcaataaagttggttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="110313" stop="109200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110013" g_stop="109475" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="551"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E429635" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110013" e_stop="109475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCTTTGTGTCGCACTGTGGATGGAATTCGACTTTGGAAAGCACCTATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGA-CCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTT</genome_strand>
        <mrna_strand>GGTGGCTTTGTGTCGCACTGTGGATGGAATTCGACTTTGGAAAGCATCTATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAAGATTTGGAAATGGCAGTCGAGATTAAGATGGATTACAGGAAAGAACCGACAGGGACGATGGGCCAAGAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGGGAACTTATGGACCCTGAAAATAAAATACGGATGAAAGTAAAGGAGATGAAGGAGAAGAGCAGAGCAACAACCATGGAAGGTGGCTCTTCTTACACTTCTATTGGAGGTTTCATCCAGACTATCATGGAGAATACTCAATGATTAGCTGCTTTGATATGTTTTTCCTTGAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCTACAAGGTAGGGGTAAGGTTTGCGTACACTTTACTCTCCCCTAACCCCACTTATGGATTACGTGGAGTA---TGTTATTGTTATTGTAATTTGATCAATAAAGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457648" ref_strand="+" ref_description="SGN-E457648 [cPRO-3-E24]">
      <seq>ggtggctttgtgtcgcactgtggatggaattcgactttggaaagcatctattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaagatttggaaatggcagtcgagattaagatggattacaggaaagaaccgacagggacgatgggccaagaagttatagtgaaagcagaggagattgagaaagcaataagggaacttatggaccctgaaaataaaatacggatgaaagtaaaggagatgaaggagaagagcagagcaacaaccatggaaggtggctcttcttacacttctattggaggtttcatccagactatcatggagaatactcaatgattagctgctttgatatgtttttccttgagccgagggtctatcagaaacaacctctctacctctacaaggtaggggtaaggtttgcgtacactttactctcccctaaccccacttatggattacgtggagtatgttattgttattgtaatttgatcaataaagttggttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="110313" stop="109200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110013" g_stop="109475" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="551"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E457648" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110013" e_stop="109475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCTTTGTGTCGCACTGTGGATGGAATTCGACTTTGGAAAGCACCTATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGA-CCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTT</genome_strand>
        <mrna_strand>GGTGGCTTTGTGTCGCACTGTGGATGGAATTCGACTTTGGAAAGCATCTATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAAGATTTGGAAATGGCAGTCGAGATTAAGATGGATTACAGGAAAGAACCGACAGGGACGATGGGCCAAGAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGGGAACTTATGGACCCTGAAAATAAAATACGGATGAAAGTAAAGGAGATGAAGGAGAAGAGCAGAGCAACAACCATGGAAGGTGGCTCTTCTTACACTTCTATTGGAGGTTTCATCCAGACTATCATGGAGAATACTCAATGATTAGCTGCTTTGATATGTTTTTCCTTGAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCTACAAGGTAGGGGTAAGGTTTGCGTACACTTTACTCTCCCCTAACCCCACTTATGGATTACGTGGAGTA---TGTTATTGTTATTGTAATTTGATCAATAAAGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205513" ref_strand="+" ref_description="SGN-E205513 [cLEC-28-L1]">
      <seq>gagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttgctgcaaaatgttggccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtatgatgattaatacctttcttgaactggattctgacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagttgtatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagctttacgatagagcaagttaaggaaatatcctatgctctcgagaatagtgggtgtcggttgttgtggacattgagacaaccaccacagatagatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111427" stop="110329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111127" g_stop="110629" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E205513" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111127" e_stop="110629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTT-TATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCTCGAGAATAGTGGGTGTCGGTTTTTGTGGACATTGAGACAACCACCACAGAAAGATGCAACA</genome_strand>
        <mrna_strand>GAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTGCTGCAAAATGTTGGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATGATGATTAATACCTTTCTTGAACTGGATTCTGACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTGTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGCTTTACGATAGAGCAAGTTAAGGAAATATCCTATGCTCTCGAGAATAGTGGGTGTCGGTTGTTGTGGACATTGAGACAACCACCACAGATAGATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208986" ref_strand="+" ref_description="SGN-E208986 [cLEC-38-K2]">
      <seq>tcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111536" stop="110390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111236" g_stop="110690" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E208986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111236" e_stop="110690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>TCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208109" ref_strand="+" ref_description="SGN-E208109 [cLEC-34-D24]">
      <seq>ttttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111528" stop="110390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111228" g_stop="110690" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E208109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111228" e_stop="110690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>TTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213162" ref_strand="+" ref_description="SGN-E213162 [cLEC-72-G16]">
      <seq>gaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcatttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112442" stop="110461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112142" g_stop="111904" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="110761" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="724" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E213162" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112142" e_stop="111904"/>
          <exon e_start="111245" e_stop="110761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCT</genome_strand>
        <mrna_strand>GAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCATTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201016" ref_strand="+" ref_description="SGN-E201016 [cLEC-5-B20]">
      <seq>ggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgccataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggtagatgatcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111294" stop="110470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110994" g_stop="110770" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E201016" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110994" e_stop="110770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCC</genome_strand>
        <mrna_strand>GGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCCATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGG-TAGATGATCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205541" ref_strand="+" ref_description="SGN-E205541 [cLEC-21-A15]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtgaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112621" stop="110707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="111904" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111007" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="657" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E205541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="111904"/>
          <exon e_start="111245" e_stop="111007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTA</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTGACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214660" ref_strand="+" ref_description="SGN-E214660 [cLEC-79-K24]">
      <seq>cttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112611" stop="110708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112311" g_stop="111904" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111008" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="646" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E214660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112311" e_stop="111904"/>
          <exon e_start="111245" e_stop="111008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTT</genome_strand>
        <mrna_strand>CTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374660" ref_strand="+" ref_description="SGN-E374660 [TUS-15-N1]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttccttgcaaatgtttgccctctgtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112621" stop="110711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="111904" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111011" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="653" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E374660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="111904"/>
          <exon e_start="111245" e_stop="111011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGC</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTTGCAAATGTTTGCCCTCTGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207840" ref_strand="+" ref_description="SGN-E207840 [cLEC-32-J24]">
      <seq>ttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcaccttcatgatagaggtggccaatgaattcgagctaccagcctatgttgtctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112603" stop="110719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112303" g_stop="111904" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111019" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="627" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E207840" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112303" e_stop="111904"/>
          <exon e_start="111245" e_stop="111019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCC</genome_strand>
        <mrna_strand>TTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTTCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTGTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214249" ref_strand="+" ref_description="SGN-E214249 [cLEC-77-D17]">
      <seq>accttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacnaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112613" stop="110733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112313" g_stop="111904" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111033" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="623" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E214249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112313" e_stop="111904"/>
          <exon e_start="111245" e_stop="111033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTG</genome_strand>
        <mrna_strand>ACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACNAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201545" ref_strand="+" ref_description="SGN-E201545 [cLEC-4-F18]">
      <seq>ggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112537" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112237" g_stop="111904" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111048" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="532" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E201545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112237" e_stop="111904"/>
          <exon e_start="111245" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATT</genome_strand>
        <mrna_strand>GGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207541" ref_strand="+" ref_description="SGN-E207541 [cLEC-36-N4]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112621" stop="110770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="111904" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111070" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="594" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E207541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="111904"/>
          <exon e_start="111245" e_stop="111070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCA</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213076" ref_strand="+" ref_description="SGN-E213076 [cLEC-72-D12]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112622" stop="110791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112322" g_stop="111904" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111091" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="574" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E213076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112322" e_stop="111904"/>
          <exon e_start="111245" e_stop="111091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAAT</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215083" ref_strand="+" ref_description="SGN-E215083 [cLEC-78-D13]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112621" stop="110865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="111904" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111165" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E215083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="111904"/>
          <exon e_start="111245" e_stop="111165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCT</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204651" ref_strand="+" ref_description="SGN-E204651 [cLEC-14-K4]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112621" stop="110910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="111904" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111210" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="454" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E204651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="111904"/>
          <exon e_start="111245" e_stop="111210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAG</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212922" ref_strand="+" ref_description="SGN-E212922 [cLEC-73-F18]">
      <seq>tgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatgtatttcaaattaactttatgtgtccaaggctttgatacagtaacaaggtatgttgcttggactctttaaaaatgttgatggatatgtgtgtcggatactgcaaaagtagtgtacataattttggagagattgaacatacaacttgtgatttatagattagatgcatgtcatcattgtcatgaatttggctgctactacaaaaacaaaaagattggtacttccttccctcccaactttatgatacttttaagcatttcgagagacaaatagtttttctcaaagcatgatatgccttttcaagtattaaaaattattaattattgtgacttatagtatgtttcaaatataaattttatttacaaaagcttaaagattatatgcccgaattcatggtcaaaatttaaaagtttggctctcgaaatccaaatgatgtcgcatgaccgggggagtattttaagttgaaaggggtgttgcactactacaccaaccttctcaatttaacgcgactagaaaatgtatttcaatgactttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112319" stop="111063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112019" g_stop="111363" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E212922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112019" e_stop="111363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</genome_strand>
        <mrna_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210281" ref_strand="+" ref_description="SGN-E210281 [cLEC-35-M7]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctnctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112622" stop="111604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112322" g_stop="111904" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E210281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112322" e_stop="111904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTNCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212951" ref_strand="+" ref_description="SGN-E212951 [cLEC-72-C13]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="-" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112622" stop="111659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112322" g_stop="111959" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="-" ref_id="SGN-E212951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112322" e_stop="111959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCA</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>89</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1110" PGL_stop="1671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1110" e_stop="1531"/>
            <exon e_start="1665" e_stop="1671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.609" e_score="0.998"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="1110" e_stop="1531" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.609">
            <gDNA_intron_boundary i_start="1532" i_stop="1664" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="1665" e_stop="1671" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1110" stop="1531"/>
              <exon start="1665" stop="1671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1110" stop="1531"/>
              <exon start="1665" stop="1671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1110" stop="1531"/>
              <exon start="1665" stop="1671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGGGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA : AGATAAA</gDNA_template>
            <first_frame> R  A  G  N  F  D  F  G  G  C  H  S  L  T  G  S  S  I  L  I  L  D  V  V  E  T  R  K  T  N  L  F  Y  C  P  *  L  V  F  M  M  S  S  P  *  Y  K  T  W  V  I  D  C  I  S  S  M  T  P  E  S  R  T  K  S  R  G  R  L  *  K  L  V  E  E  *  K  *  F  W  I  P  E  T  K  K  W  C  C  V  A  G  V  *  F  *  G  I  L  F  L  D  G  T  G  Y  Q  C  P  I  S  I  T  *  E  I  C  H  S  F  M  I  I  R  N  I  F  V  I  F  S  L  N  K  L  N  C  C  S  S  K :   D  K </first_frame>
            <second_frame>  E  L  V  I  S  I  L  G  V  V  T  A  S  Q  V  R  P  F  *  S  L  M  W  S  K  P  E  K  L  T  C  F  I  V  R  D  S  C  L  *  *  V  H  P  N  I  R  L  G  *  *  I  V  S  V  Q  *  R  Q  N  Q  G  Q  N  L  G  E  G  C  K  N  *  L  K  N  E  S  S  S  G  Y  Q  R  P  R  S  G  V  V  L  Q  V  Y  S  F  K  E  Y  F  F  L  T  A  Q  A  I  N  V  P  *  V  *  L  R  K  S  V  I  H  L  *  *  F  G  I  Y  L  L  F  F  P  *  I  N  *  I  V  V  R  Q   : K  I   </second_frame>
            <third_frame>   S  W  *  F  R  F  W  G  L  S  Q  P  H  R  F  V  H  S  N  P  *  C  G  R  N  Q  K  N  *  L  V  L  L  S  V  T  R  V  Y  D  E  F  T  L  I  *  D  L  G  D  R  L  Y  Q  F  N  D  A  R  I  K  D  K  I  *  G  K  V  V  K  I  S  *  R  M  K  V  V  L  D  T  R  D  Q  E  V  V  L  C  C  R  C  I  V  L  R  N  T  F  S  *  R  H  R  L  S  M  S  H  K  Y  N  L  G  N  L  S  F  I  Y  D  N  S  E  Y  I  C  Y  F  F  L  E  *  I  K  L  L  F  V  K  :  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17748" PGL_stop="7610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17748" e_stop="17118"/>
            <exon e_start="15011" e_stop="14934"/>
            <exon e_start="14256" e_stop="14215"/>
            <exon e_start="14128" e_stop="14023"/>
            <exon e_start="11415" e_stop="11351"/>
            <exon e_start="9857" e_stop="9819"/>
            <exon e_start="9741" e_stop="9637"/>
            <exon e_start="9532" e_stop="9445"/>
            <exon e_start="9171" e_stop="9125"/>
            <exon e_start="7942" e_stop="7610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="0.929"/>
          <exon-intron don_prob="0.940" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="17748" e_stop="17118" e_length="631"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="17117" i_stop="15012" i_length="2106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15011" e_stop="14934" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14933" i_stop="14257" i_length="677"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14256" e_stop="14215" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14214" i_stop="14129" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14128" e_stop="14023" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14022" i_stop="11416" i_length="2607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11415" e_stop="11351" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.985">
            <gDNA_intron_boundary i_start="11350" i_stop="9858" i_length="1493"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9857" e_stop="9819" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9818" i_stop="9742" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9741" e_stop="9637" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9636" i_stop="9533" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9532" e_stop="9445" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9444" i_stop="9172" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9171" e_stop="9125" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9124" i_stop="7943" i_length="1182"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7942" e_stop="7610" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17748" stop="17271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17734" stop="17138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17734" stop="17274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17727" stop="17140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17719" stop="17362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17715" stop="17269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="17276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17710" stop="17158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17699" stop="17218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17696" stop="17221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17162" stop="17118"/>
              <exon start="15011" stop="14934"/>
              <exon start="14256" stop="14215"/>
              <exon start="14128" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14086" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14086" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14086" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14086" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14086" stop="14023"/>
              <exon start="11415" stop="11351"/>
              <exon start="9857" stop="9819"/>
              <exon start="9741" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9719" stop="9637"/>
              <exon start="9532" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9527" stop="9445"/>
              <exon start="9171" stop="9125"/>
              <exon start="7942" stop="7689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG : GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG : AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG : GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG : GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG : ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG : AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG : GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA : GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG : ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</gDNA_template>
            <first_frame> L  F  S  L  P  *  T  L  I  T  S  C  K  Q  N  Y  Y  Q  S  T  F  H  H  C  K  S  S  N  G  S  L  Q  T  T  L  P  S  S  S  S  L  F  I  Q  K  P  I  S  L  F  S  Y  F  P  F  S  F  A  Q  I  S  L  F  L  I  I  I  R  K  P  E  F  E  *  P  K  F  N  S  T  R  F  L  H  P  *  E  P  A  R  E  *  *  P  T  R  I  K  *  P  R  W  G  *  S  G  W  W  V  V  D  P  G  G  S  A  V  L  E  G  Y  P  E  N  S  S  D  F  L  S  D  K  G  S  A  V  T  G  G  F  A  G  R  G  E  R  E  N  G  R  Y  G  *  *  D  G  E  R  E  E  K  N  R  G  A  K  T  G  G  N  E  E  S  Y  E  C  *  R  G  N  D  F  V  S  N  I  D  *  C  E  E  *  *  K  E  E  K  S  C  L  *  S  *  R  G  H  S  A  C  K   : G  *  C  Q  E  E  I  *  *  N  S  G  S  S  C  C  F  D  S  *  Y  A  S  K  *  S   : E  T  *  R  Y  S  G  C  S  S  W  V  W  K   : G  I  S  D  C  C  F  C  *  R  S  C  C  *  *  S  P  R  S  R  G  *  C  C  W  W  F  G  A  H  R  E  H  Q  E  W :   K  C  E  D  *  F  *  Q  M  F  F  H  S  C  N  D  A  E  L  E  T   : D  C  E  V  L  E  A  V  D  A  R  Y  *   : E  R  Y  C  Y  Q  R  Y  N  K  S  S  E  R  S  *  A  R  C  T  V  Q  K  R  *  N  C  N  C  A  C  R  N  W  E   : G  K  F  S  R  R  G  I  V  *  K  H  W  C  I  C  T  *  T  F  A  S  E  A  C  W  S  K  K  E :   L  K  I  C  W  L  C  E  Y  S  P  S  L  Q  Y   : D  G  S  I  I  S  C  Y  N  T  V  V  I  D  C  S  R  P  P  C  K  E  V  C  S  M  I  V  F  E  *  K  I  Q  F  *  L  D  T  L  S  *  *  I  Q  F  *  L  G  T  M  L  Y  S  F  V  *  I  S  *  F  S  H  I  R  K  K  V  F  P  S  Y  F  C  F  F  P  F  T  V  M  I  Y  A  Q  P  S  A  *  N  P  F  L  T  Q  N  S  L  L  L  L  H  I  F  I  V  L  S  E  K  I  </first_frame>
            <second_frame>  S  S  L  F  P  K  P  S  L  H  L  A  N  R  T  T  I  S  P  P  F  T  I  V  R  A  P  M  A  A  F  K  L  L  Y  Q  A  R  R  H  C  S  Y  R  S  P  S  H  F  S  P  T  F  R  S  H  L  H  R  F  L  S  S  S  S  S  S  E  N  P  N  S  N  N  P  S  S  I  Q  P  V  S  Y  T  P  K  N  P  P  E  S  S  S  R  P  E  S  N  N  P  D  G  V  K  A  D  G  G  L  W  T  R  E  D  L  R  Y  L  K  D  T  P  K  I  A  P  I  S  Y  P  T  R  V  A  P  L  P  E  D  L  P  E  E  E  K  G  K  M  E  G  M  G  D  E  M  E  R  E  R  R  R  I  E  A  Q  K  R  A  A  M  R  R  V  M  N  A  E  E  E  M  I  S  F  P  T  L  I  N  V  K  S  D  E  K  K  K  K  A  V  Y  D  L  K  E  A  I  R  L  V  K  :  A  N  A  K  K  K  F  D  E  T  L  E  A  H  V  V  L  T  P  D  M  R  R  S  D  L  :  K  L  E  G  T  V  A  V  P  H  G  F  G  K  :  V  Y  R  I  A  V  F  A  E  G  A  A  A  D  E  A  R  E  A  G  A  D  V  V  G  G  L  E  L  I  E  N  I  K  S   : G  N  V  K  I  D  F  D  K  C  F  S  T  H  A  M  M  P  N  L  R  Q  :  I  A  K  Y  L  R  Q  L  M  P  D  T  K  :  K  G  T  V  T  K  D  I  T  K  A  V  K  E  A  K  R  G  V  P  F  K  K  D  K  T  A  I  V  H  V  G  I  G  K  :  V  S  F  Q  E  E  A  L  C  E  N  I  G  A  F  V  H  E  L  L  R  Q  K  P  A  G  L  K  K   : S  S  K  Y  A  G  Y  V  N  T  V  H  L  C  S  T  :  M  G  P  S  F  P  V  T  I  Q  S  L  S  I  A  A  D  R  H  A  R  K  Y  V  Q  *  *  Y  L  N  R  R  S  N  F  N  L  I  P  S  L  N  R  S  N  F  N  L  V  L  C  C  T  H  L  F  K  F  L  D  F  P  T  L  E  K  R  C  F  L  V  I  F  V  S  S  P  L  L  *  *  S  M  P  S  P  L  L  E  T  P  F  *  L  K  I  H  Y  C  C  F  T  F  L  L  F  C  Q  R  K  * </second_frame>
            <third_frame>   L  L  S  S  L  N  P  H  Y  I  L  Q  T  E  L  L  S  V  H  L  S  P  L  *  E  L  Q  W  Q  P  S  N  Y  S  T  K  L  V  V  T  V  H  T  E  A  H  L  T  F  L  L  L  S  V  L  I  C  T  D  F  S  L  P  H  H  H  Q  K  T  R  I  R  I  T  Q  V  Q  F  N  P  F  P  T  P  L  R  T  R  Q  R  V  V  A  D  P  N  Q  I  T  Q  M  G  L  K  R  M  V  G  C  G  P  G  R  I  C  G  T  *  R  I  P  R  K  *  L  R  F  L  I  R  Q  G  *  R  R  Y  R  R  I  C  R  K  R  R  K  G  K  W  K  V  W  V  M  R  W  R  E  R  G  E  E  S  R  R  K  N  G  R  Q  *  G  E  L  *  M  L  K  R  K  *  F  R  F  Q  H  *  L  M  *  R  V  M  K  R  R  K  K  L  F  M  I  L  K  R  P  F  G  L  *  R :   L  M  P  R  R  N  L  M  K  L  W  K  L  M  L  F  *  L  L  I  C  V  E  V  I  * :   N  L  K  V  Q  W  L  F  L  M  G  L  E  R :   Y  I  G  L  L  F  L  L  K  E  L  L  L  M  K  P  E  K  Q  G  L  M  L  L  V  V  W  S  S  *  R  T  S  R  V  :  E  M  *  R  L  I  L  T  N  V  F  P  L  M  Q  *  C  R  T  *  D  R :   L  R  S  T  *  G  S  *  C  Q  I  L  R :   K  V  L  L  P  K  I  *  Q  K  Q  *  K  K  L  S  E  V  Y  R  S  K  K  I  K  L  Q  L  C  M  *  E  L  G  R :   *  V  F  K  K  R  H  C  V  K  T  L  V  H  L  Y  M  N  F  C  V  R  S  L  L  V  *  K  R  :  A  Q  N  M  L  V  M  *  I  Q  S  I  S  A  V  R :   W  V  H  H  F  L  L  Q  Y  S  R  Y  R  L  Q  Q  T  A  M  Q  G  S  M  F  N  D  S  I  *  I  E  D  P  I  L  T  *  Y  P  L  L  I  D  P  I  L  T  W  Y  Y  V  V  L  I  C  L  N  F  L  I  F  P  H  *  K  K  G  V  S  *  L  F  L  F  L  P  L  Y  C  N  D  L  C  P  A  L  C  L  K  P  L  F  N  S  K  F  T  T  V  A  S  H  F  Y  C  S  V  R  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17747" stop="17118"/>
                    <exon start="15011" stop="14934"/>
                    <exon start="14256" stop="14215"/>
                    <exon start="14128" stop="14023"/>
                    <exon start="11415" stop="11351"/>
                    <exon start="9857" stop="9819"/>
                    <exon start="9741" stop="9637"/>
                    <exon start="9532" stop="9445"/>
                    <exon start="9171" stop="9125"/>
                    <exon start="7942" stop="7865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFPKPSLHLANRTTISPPFTIVRAPMAAFKLLYQARRHCSYRSPSHFSPTFRSHLHRFLSSSSSSENPNSNNPSSIQPVSYTPKNPPESSSRPESNNPDGVKADGGLWTREDLRYLKDTPKIAPISYPTRVAPLPEDLPEEEKGKMEGMGDEMERERRRIEAQKRAAMRRVMNAEEEMISFPTLINVKSDEKKKKAVYDLKEAIRLVKANAKKKFDETLEAHVVLTPDMRRSDLKLEGTVAVPHGFGKVYRIAVFAEGAAADEAREAGADVVGGLELIENIKSGNVKIDFDKCFSTHAMMPNLRQIAKYLRQLMPDTKKGTVTKDITKAVKEAKRGVPFKKDKTAIVHVGIGKVSFQEEALCENIGAFVHELLRQKPAGLKKSSKYAGYVNTVHLCSTMGPSFPVTIQSLSIAADRHARKYVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10762" e_stop="9983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="10762" e_stop="9983" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10762" stop="10342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10760" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10760" stop="9994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</gDNA_template>
            <first_frame> S  *  Y  Q  I  R  R  V  P  L  F  K  N  S  L  R  H  S  P  L  I  F  L  S  P  T  *  E  G  R  I  S  F  P  A  C  C  R  T  H  H  F  F  A  M  L  L  L  P  F  C  K  L  T  P  L  W  K  Q  N  K  A  T  E  E  S  E  N  *  R  K  N  R  D  F  F  L  L  V  K  K  T  S  D  *  F  F  S  S  I  V  F  K  Q  T  Y  E  *  K  L  M  N  W  R  F  Y  V  *  N  Y  K  N  *  S  Y  G  K  I  S  E  I  K  V  K  E  H  L  G  T  P  I  Y  M  L  R  L  L  C  G  H  T  R  V  I  R  M  S  G  C  I  W  S  S  H  I  L  Y  L  V  K  K  Y  G  F  V  F  G  Q  E  I  R  G  K  D  *  Q  L  L  L  M  F  T  S  R  I  V  F  S  *  *  L  H  S  L  Y  P  R  I  I  L  V  M  K  C  Y  *  R  S  C  V  E  V  L  C  K  N  N  Y  T  *  I  D  L  F  S  *  I  W  L  G  R  D  *  R  R  K  G  W  R  V  E  L  V  K  H  C  N  K  V  A  I  E  V  L  *  F  Q  F  *  Y </first_frame>
            <second_frame>  A  D  I  K  *  D  G  F  L  F  L  K  I  L  S  G  T  V  P  *  F  F  S  L  L  L  K  R  G  E  Y  P  F  R  L  A  A  G  H  I  I  S  L  L  C  F  C  F  L  F  A  S  *  H  L  C  G  S  R  T  K  R  R  K  K  V  K  I  R  G  K  T  E  T  F  F  S  L  *  K  K  R  V  T  S  F  S  L  Q  *  F  L  N  R  H  M  N  R  S  *  *  I  G  D  S  M  F  E  T  T  K  T  S  H  M  E  R  F  L  K  *  K  *  K  N  T  W  G  H  Q  F  I  C  Y  D  C  Y  V  D  I  Q  G  *  L  G  C  L  V  V  S  G  L  P  I  F  C  I  *  S  R  N  M  V  L  Y  L  V  K  K  Y  G  E  R  I  D  S  C  Y  *  C  L  H  Q  E  *  F  F  P  S  D  C  I  L  F  I  L  G  *  F  *  L  *  S  V  I  E  E  A  V  W  K  Y  Y  V  K  I  I  I  H  E  L  I  F  L  V  K  Y  G  W  E  G  I  R  E  G  R  D  G  G  L  N  *  L  S  I  V  T  R  W  L  L  K  S  F  N  F  N  F  N   </second_frame>
            <third_frame>   L  I  S  N  K  T  G  S  S  F  *  K  F  S  Q  A  Q  S  L  D  F  S  L  S  Y  L  R  G  E  N  I  L  S  G  L  L  P  D  T  S  F  L  C  Y  A  F  A  S  F  L  Q  A  N  T  F  V  E  A  E  Q  S  D  G  R  K  *  K  L  E  E  K  Q  R  L  F  S  P  C  K  K  N  E  *  L  V  F  L  F  N  S  F  *  T  D  I  *  I  E  V  D  E  L  E  I  L  C  L  K  L  Q  K  L  V  I  W  K  D  F  *  N  K  S  K  R  T  L  G  D  T  N  L  Y  A  T  I  V  M  W  T  Y  K  G  N  *  D  V  W  L  Y  L  V  F  P  Y  F  V  F  S  Q  E  I  W  F  C  I  W  S  R  N  T  G  K  G  L  T  A  V  I  N  V  Y  I  K  N  S  F  F  L  V  I  A  F  S  L  S  *  D  N  F  S  Y  E  V  L  L  K  K  L  C  G  S  I  M  *  K  *  L  Y  M  N  *  S  F  *  L  N  M  A  G  K  G  L  E  K  E  G  M  E  G  *  I  S  *  A  L  *  Q  G  G  Y  *  S  P  L  I  S  I  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20617" PGL_stop="19091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20617" e_stop="20400"/>
            <exon e_start="20290" e_stop="20218"/>
            <exon e_start="19235" e_stop="19091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.968"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="0.945"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="20617" e_stop="20400" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20399" i_stop="20291" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="20290" e_stop="20218" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20217" i_stop="19236" i_length="982"/>
          </intron>
          <exon e_serial="3" e_score="0.924">
            <gDNA_exon_boundary e_start="19235" e_stop="19091" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20617" stop="20400"/>
              <exon start="20290" stop="20218"/>
              <exon start="19235" stop="19091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCGCTGGACTGTCAAAATTTGTGATTTTGGCCTCTCAAGAATAATGACAGATGCATCTATAAGAGACTCAACGTCTGCTGGCACTCCAGAATGGATGGCTCCAGAACTCATTCGTAATGAACCTTTCACAGAAAAATGTGACATTTTTAGCTTTGGTGTGATAATGTGGGAGCTTTGTACCCTAAACAGACCATGGGAGGGTATACCACCTGATCGG : GTCGTTTATGCTGTTGCCAATGAAGGATCAAGGTTAGAGATACCTGAAGGACCCCTCGGCAAACTAATAGCAG : ATTGCTGGGCAGAGCCAAACGAAAGACCTAATTGTGAGGAAATTTTCACTCGACTTCTTGACTGTGAATACTCACTGTGCTAAGTGAATTCACTTTTTCTTTGTGTAGTGGAATACATTGTAGAGGCTTTAATTGATGTGCTGCT</gDNA_template>
            <first_frame> S  A  G  L  S  K  F  V  I  L  A  S  Q  E  *  *  Q  M  H  L  *  E  T  Q  R  L  L  A  L  Q  N  G  W  L  Q  N  S  F  V  M  N  L  S  Q  K  N  V  T  F  L  A  L  V  *  *  C  G  S  F  V  P  *  T  D  H  G  R  V  Y  H  L  I  G :   S  F  M  L  L  P  M  K  D  Q  G  *  R  Y  L  K  D  P  S  A  N  *  *  Q  :  I  A  G  Q  S  Q  T  K  D  L  I  V  R  K  F  S  L  D  F  L  T  V  N  T  H  C  A  K  *  I  H  F  F  F  V  *  W  N  T  L  *  R  L  *  L  M  C  C  </first_frame>
            <second_frame>  A  L  D  C  Q  N  L  *  F  W  P  L  K  N  N  D  R  C  I  Y  K  R  L  N  V  C  W  H  S  R  M  D  G  S  R  T  H  S  *  *  T  F  H  R  K  M  *  H  F  *  L  W  C  D  N  V  G  A  L  Y  P  K  Q  T  M  G  G  Y  T  T  *  S   : G  R  L  C  C  C  Q  *  R  I  K  V  R  D  T  *  R  T  P  R  Q  T  N  S  R :   L  L  G  R  A  K  R  K  T  *  L  *  G  N  F  H  S  T  S  *  L  *  I  L  T  V  L  S  E  F  T  F  S  L  C  S  G  I  H  C  R  G  F  N  *  C  A  A </second_frame>
            <third_frame>   R  W  T  V  K  I  C  D  F  G  L  S  R  I  M  T  D  A  S  I  R  D  S  T  S  A  G  T  P  E  W  M  A  P  E  L  I  R  N  E  P  F  T  E  K  C  D  I  F  S  F  G  V  I  M  W  E  L  C  T  L  N  R  P  W  E  G  I  P  P  D  R  :  V  V  Y  A  V  A  N  E  G  S  R  L  E  I  P  E  G  P  L  G  K  L  I  A   : D  C  W  A  E  P  N  E  R  P  N  C  E  E  I  F  T  R  L  L  D  C  E  Y  S  L  C  *  V  N  S  L  F  L  C  V  V  E  Y  I  V  E  A  L  I  D  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20615" stop="20400"/>
                    <exon start="20290" stop="20218"/>
                    <exon start="19235" stop="19153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWTVKICDFGLSRIMTDASIRDSTSAGTPEWMAPELIRNEPFTEKCDIFSFGVIMWELCTLNRPWEGIPPDRVVYAVANEGSRLEIPEGPLGKLIADCWAEPNERPNCEEIFTRLLDCEYSLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26686" PGL_stop="26139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26686" e_stop="26293"/>
            <exon e_start="26212" e_stop="26139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.755" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26686" e_stop="26293" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.755">
            <gDNA_intron_boundary i_start="26292" i_stop="26213" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26212" e_stop="26139" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26686" stop="26293"/>
              <exon start="26212" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTAGATTTTTCCGGAAAGGATCGCCAGGAGCCTGTGAATCTTTCTAGGTGGAAGGTGAGACTTGAAGTCCTATTAAGGAGAAATCCAACTCCAGCAGTGAAGAGATTCCTGGCAACACTAGCTTTTTACAGACTCCCAGAAATTTTAGCAGGGGTTCTCCTTATATCATGAAAAAATTGGAGTATACATTACTTAAAAGCTTGGTTGGAAATTTATAGAGATTTATGCATTTCAGCAAATTGTATGCTTGCAAAATAAACCCCTAATTATATCTCTAATCAGATCCCTGGCTAATGCAAATCATGTAATATCTTAACAGGAAAAGTTTATTTGTTAGATAGTCTGGAGCTAAATCAAGCCAATTAAATTCATATTGGGCACACAATGAGTT : GGTTATATACTTTTAATAGCAAAGGAGAACAATATAAGGGAAAATAACATGAGACAGTTGCTGCTGTCAACATG</gDNA_template>
            <first_frame> A  V  D  F  S  G  K  D  R  Q  E  P  V  N  L  S  R  W  K  V  R  L  E  V  L  L  R  R  N  P  T  P  A  V  K  R  F  L  A  T  L  A  F  Y  R  L  P  E  I  L  A  G  V  L  L  I  S  *  K  N  W  S  I  H  Y  L  K  A  W  L  E  I  Y  R  D  L  C  I  S  A  N  C  M  L  A  K  *  T  P  N  Y  I  S  N  Q  I  P  G  *  C  K  S  C  N  I  L  T  G  K  V  Y  L  L  D  S  L  E  L  N  Q  A  N  *  I  H  I  G  H  T  M  S   : W  L  Y  T  F  N  S  K  G  E  Q  Y  K  G  K  *  H  E  T  V  A  A  V  N  M </first_frame>
            <second_frame>  Q  *  I  F  P  E  R  I  A  R  S  L  *  I  F  L  G  G  R  *  D  L  K  S  Y  *  G  E  I  Q  L  Q  Q  *  R  D  S  W  Q  H  *  L  F  T  D  S  Q  K  F  *  Q  G  F  S  L  Y  H  E  K  I  G  V  Y  I  T  *  K  L  G  W  K  F  I  E  I  Y  A  F  Q  Q  I  V  C  L  Q  N  K  P  L  I  I  S  L  I  R  S  L  A  N  A  N  H  V  I  S  *  Q  E  K  F  I  C  *  I  V  W  S  *  I  K  P  I  K  F  I  L  G  T  Q  *  V  :  G  Y  I  L  L  I  A  K  E  N  N  I  R  E  N  N  M  R  Q  L  L  L  S  T   </second_frame>
            <third_frame>   S  R  F  F  R  K  G  S  P  G  A  C  E  S  F  *  V  E  G  E  T  *  S  P  I  K  E  K  S  N  S  S  S  E  E  I  P  G  N  T  S  F  L  Q  T  P  R  N  F  S  R  G  S  P  Y  I  M  K  K  L  E  Y  T  L  L  K  S  L  V  G  N  L  *  R  F  M  H  F  S  K  L  Y  A  C  K  I  N  P  *  L  Y  L  *  S  D  P  W  L  M  Q  I  M  *  Y  L  N  R  K  S  L  F  V  R  *  S  G  A  K  S  S  Q  L  N  S  Y  W  A  H  N  E  L :   V  I  Y  F  *  *  Q  R  R  T  I  *  G  K  I  T  *  D  S  C  C  C  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43882" PGL_stop="43251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43882" e_stop="43251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="43882" e_stop="43251" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43882" stop="43327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43835" stop="43251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGATCTTGAATTCAAATCTATCATAGAGTGGGTTAGATAAGTGATTGACCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACGTTTTGGACTAGTAGTCCATAAATCAAGGTTTAATGTTAGTGGGGTACAACTAAATTATTGTGCGATAGTATAATCGTAAGATATCAAATACGGTTAGTGCCTTGGGACATAAAGATTTGTCGCAAAAATGCTGACATTATTGGAGATGTTTTCTCCTATGATGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATACATATAATGAATAATTGTCATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAGCAATCGAGGTGTTGGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATATATAAAGCTTTAAGAATTCTTATATGGATTGAAATAGTCAAAGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTATGAAAAGGTATTGGTAAGACAAAATTTTATTTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTATTAGTGTATATACACAAATATGTTTTGATGCGTTTTTATATGGA</gDNA_template>
            <first_frame> R  G  S  *  I  Q  I  Y  H  R  V  G  *  I  S  D  *  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  V  L  D  *  *  S  I  N  Q  G  L  M  L  V  G  Y  N  *  I  I  V  R  *  Y  N  R  K  I  S  N  T  V  S  A  L  G  H  K  D  L  S  Q  K  C  *  H  Y  W  R  C  F  L  L  *  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  T  *  I  H  I  M  N  N  C  H  V  *  L  D  N  E  G  Y  M  K  I  L  E  A  I  E  V  L  E  A  Y  K  S  L  K  E  T  F  S  I  Y  K  A  L  R  I  L  I  W  I  E  I  V  K  E  E  K  G  T  K  E  *  P  *  L  S  L  Y  F  M  K  R  Y  W  *  D  K  I  L  F  *  P  T  D  *  *  F  D  K  *  N  I  C  L  L  V  Y  I  H  K  Y  V  L  M  R  F  Y  M   </first_frame>
            <second_frame>  E  D  L  E  F  K  S  I  I  E  W  V  R  *  V  I  D  Q  V  K  C  I  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  S  S  P  *  I  K  V  *  C  *  W  G  T  T  K  L  L  C  D  S  I  I  V  R  Y  Q  I  R  L  V  P  W  D  I  K  I  C  R  K  N  A  D  I  I  G  D  V  F  S  Y  D  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  Y  I  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  F  L  K  Q  S  R  C  W  K  H  I  R  V  *  K  K  L  F  Q  Y  I  K  L  *  E  F  L  Y  G  L  K  *  S  K  K  K  R  V  Q  K  N  D  P  N  C  P  C  I  L  *  K  G  I  G  K  T  K  F  Y  F  D  L  Q  I  D  N  L  T  N  E  I  F  V  Y  *  C  I  Y  T  N  M  F  *  C  V  F  I  W  </second_frame>
            <third_frame>   R  I  L  N  S  N  L  S  *  S  G  L  D  K  *  L  T  K  *  N  A  *  F  K  Y  I  L  F  H  L  E  K  *  R  F  G  L  V  V  H  K  S  R  F  N  V  S  G  V  Q  L  N  Y  C  A  I  V  *  S  *  D  I  K  Y  G  *  C  L  G  T  *  R  F  V  A  K  M  L  T  L  L  E  M  F  S  P  M  M  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  T  Y  N  E  *  L  S  C  L  A  R  Q  *  R  L  Y  E  N  S  *  S  N  R  G  V  G  S  I  *  E  F  E  R  N  F  F  N  I  *  S  F  K  N  S  Y  M  D  *  N  S  Q  R  R  K  G  Y  K  R  M  T  L  I  V  L  V  F  Y  E  K  V  L  V  R  Q  N  F  I  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  I  S  V  Y  T  Q  I  C  F  D  A  F  L  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53127" PGL_stop="55452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53127" e_stop="53165"/>
            <exon e_start="54823" e_stop="55452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53127" e_stop="53165" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53166" i_stop="54822" i_length="1657"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="54823" e_stop="55452" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53127" stop="53165"/>
              <exon start="54823" stop="55452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTGTTTCAAGTCAAGATCATCTATTTTCTAAAG : AAATAAGGCGGTGTCAAATCATATCATGGAGGGCAAGCAATTGAAGTTTAATCAACCTCTTCTGTCAGTAAGACGAATCTCTCCAGCAATGATTTCCCAGAGAGATGAGAAAAAGAAATTCGACAATTCCTTTCCCACTATGACACATCCTCCTCATTACAAATCAGAACTGAACTCAGGATTAGTCGTAAAGCCAGGAGCTGTTCCTTTCCTCTGGGAACAGACCCCCGGAAGGCCAAAGGATGAGAGTAGACCACAAACTCATTTCACGGAGAAACCTCTTACCGCACCAAAGCTTCCACCTGGGCGGAAGTTAAGAGATAACCAGGATTACAATCAAACAGGAAAATATCAAACTGCCATGCTGAGTTGCACTTCTTCAGATGAAAATGTAAAGAAGATTGAGAGTTTTGACAGCTCAAAAGAGGTTATGCACGATAAGGAAAAGATCAAATCGGAGAATGATGATGAAACCTATTTGGATGCCTTGGATGCACTTTCAAGAACTGAATCATCCTTTCTAAATTGTAGTGTAAGTGGCTTAAGTGAATTTGATGAGCCGAATGCAAAACAATCTCGAACTTCTTCAGCGAATCCGCAGACTAAGGATTTTATGATGGGTCGATTTCT</gDNA_template>
            <first_frame> K  K  L  F  Q  V  K  I  I  Y  F  L  K  :  K  *  G  G  V  K  S  Y  H  G  G  Q  A  I  E  V  *  S  T  S  S  V  S  K  T  N  L  S  S  N  D  F  P  E  R  *  E  K  E  I  R  Q  F  L  S  H  Y  D  T  S  S  S  L  Q  I  R  T  E  L  R  I  S  R  K  A  R  S  C  S  F  P  L  G  T  D  P  R  K  A  K  G  *  E  *  T  T  N  S  F  H  G  E  T  S  Y  R  T  K  A  S  T  W  A  E  V  K  R  *  P  G  L  Q  S  N  R  K  I  S  N  C  H  A  E  L  H  F  F  R  *  K  C  K  E  D  *  E  F  *  Q  L  K  R  G  Y  A  R  *  G  K  D  Q  I  G  E  *  *  *  N  L  F  G  C  L  G  C  T  F  K  N  *  I  I  L  S  K  L  *  C  K  W  L  K  *  I  *  *  A  E  C  K  T  I  S  N  F  F  S  E  S  A  D  *  G  F  Y  D  G  S  I  S </first_frame>
            <second_frame>  K  N  C  F  K  S  R  S  S  I  F  *  R :   N  K  A  V  S  N  H  I  M  E  G  K  Q  L  K  F  N  Q  P  L  L  S  V  R  R  I  S  P  A  M  I  S  Q  R  D  E  K  K  K  F  D  N  S  F  P  T  M  T  H  P  P  H  Y  K  S  E  L  N  S  G  L  V  V  K  P  G  A  V  P  F  L  W  E  Q  T  P  G  R  P  K  D  E  S  R  P  Q  T  H  F  T  E  K  P  L  T  A  P  K  L  P  P  G  R  K  L  R  D  N  Q  D  Y  N  Q  T  G  K  Y  Q  T  A  M  L  S  C  T  S  S  D  E  N  V  K  K  I  E  S  F  D  S  S  K  E  V  M  H  D  K  E  K  I  K  S  E  N  D  D  E  T  Y  L  D  A  L  D  A  L  S  R  T  E  S  S  F  L  N  C  S  V  S  G  L  S  E  F  D  E  P  N  A  K  Q  S  R  T  S  S  A  N  P  Q  T  K  D  F  M  M  G  R  F   </second_frame>
            <third_frame>   K  T  V  S  S  Q  D  H  L  F  S  K   : E  I  R  R  C  Q  I  I  S  W  R  A  S  N  *  S  L  I  N  L  F  C  Q  *  D  E  S  L  Q  Q  *  F  P  R  E  M  R  K  R  N  S  T  I  P  F  P  L  *  H  I  L  L  I  T  N  Q  N  *  T  Q  D  *  S  *  S  Q  E  L  F  L  S  S  G  N  R  P  P  E  G  Q  R  M  R  V  D  H  K  L  I  S  R  R  N  L  L  P  H  Q  S  F  H  L  G  G  S  *  E  I  T  R  I  T  I  K  Q  E  N  I  K  L  P  C  *  V  A  L  L  Q  M  K  M  *  R  R  L  R  V  L  T  A  Q  K  R  L  C  T  I  R  K  R  S  N  R  R  M  M  M  K  P  I  W  M  P  W  M  H  F  Q  E  L  N  H  P  F  *  I  V  V  *  V  A  *  V  N  L  M  S  R  M  Q  N  N  L  E  L  L  Q  R  I  R  R  L  R  I  L  *  W  V  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53164" stop="53165"/>
                    <exon start="54823" stop="55450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKAVSNHIMEGKQLKFNQPLLSVRRISPAMISQRDEKKKFDNSFPTMTHPPHYKSELNSGLVVKPGAVPFLWEQTPGRPKDESRPQTHFTEKPLTAPKLPPGRKLRDNQDYNQTGKYQTAMLSCTSSDENVKKIESFDSSKEVMHDKEKIKSENDDETYLDALDALSRTESSFLNCSVSGLSEFDEPNAKQSRTSSANPQTKDFMMGRF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="56066" PGL_stop="56727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56066" e_stop="56727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56066" e_stop="56727" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56066" stop="56727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGACCTATTCAACTTATGCCAATGACCCTTACAATAATATGACAATGCTTAGCACGAACGCGAAAGAAAATAATCCTGAGCTCAAGTGCTTGTCTGATCAGAACAATATCAGGGAAGTAGATGTTTTAACTCCTTTTGTAGAGAAAACTCTGTACATAGATATTGTGCATAAAACGGATTCATCAGTTAAGATATCATGTTCTCTAGATAAAAAACCATCCAAGTTACAACACAAGGACGTTGAGATACTTGAACAGATGATAAAACAAAAACCATTTTTAGATTCTTCACTTTATTCGTCTGAGACTTCATTAAAGCCATATGTTCAAAGGAAAGCTGACTGCAATCCACCACGTTCAGCGGAAAGACTGAACAATGAAAGAGAGACGAAAGCATGGACATCTACGGGTCAAGCTCGAGATTGTTACCAAGATACAACGACCTTAGCAAAGTCTGACAGTGATGGTGTAGAAAAAAATAGAAAGCCAATTCCGAGAAGAGAAAAGTTAGAGGACTCATGCAAAGTGCACCCAGAGTTTCTTGCTCCACCACCTTTACCGAAATCTCCATCAGATTCATGGCTTTGCCGCACTTTGCCTTCTTTATCCACAAAGAATGCATCTTCACGGGCTTATATCGGGACAGGACTGAATCCTAATA</gDNA_template>
            <first_frame> Q  D  L  F  N  L  C  Q  *  P  L  Q  *  Y  D  N  A  *  H  E  R  E  R  K  *  S  *  A  Q  V  L  V  *  S  E  Q  Y  Q  G  S  R  C  F  N  S  F  C  R  E  N  S  V  H  R  Y  C  A  *  N  G  F  I  S  *  D  I  M  F  S  R  *  K  T  I  Q  V  T  T  Q  G  R  *  D  T  *  T  D  D  K  T  K  T  I  F  R  F  F  T  L  F  V  *  D  F  I  K  A  I  C  S  K  E  S  *  L  Q  S  T  T  F  S  G  K  T  E  Q  *  K  R  D  E  S  M  D  I  Y  G  S  S  S  R  L  L  P  R  Y  N  D  L  S  K  V  *  Q  *  W  C  R  K  K  *  K  A  N  S  E  K  R  K  V  R  G  L  M  Q  S  A  P  R  V  S  C  S  T  T  F  T  E  I  S  I  R  F  M  A  L  P  H  F  A  F  F  I  H  K  E  C  I  F  T  G  L  Y  R  D  R  T  E  S  *   </first_frame>
            <second_frame>  R  T  Y  S  T  Y  A  N  D  P  Y  N  N  M  T  M  L  S  T  N  A  K  E  N  N  P  E  L  K  C  L  S  D  Q  N  N  I  R  E  V  D  V  L  T  P  F  V  E  K  T  L  Y  I  D  I  V  H  K  T  D  S  S  V  K  I  S  C  S  L  D  K  K  P  S  K  L  Q  H  K  D  V  E  I  L  E  Q  M  I  K  Q  K  P  F  L  D  S  S  L  Y  S  S  E  T  S  L  K  P  Y  V  Q  R  K  A  D  C  N  P  P  R  S  A  E  R  L  N  N  E  R  E  T  K  A  W  T  S  T  G  Q  A  R  D  C  Y  Q  D  T  T  T  L  A  K  S  D  S  D  G  V  E  K  N  R  K  P  I  P  R  R  E  K  L  E  D  S  C  K  V  H  P  E  F  L  A  P  P  P  L  P  K  S  P  S  D  S  W  L  C  R  T  L  P  S  L  S  T  K  N  A  S  S  R  A  Y  I  G  T  G  L  N  P  N  </second_frame>
            <third_frame>   G  P  I  Q  L  M  P  M  T  L  T  I  I  *  Q  C  L  A  R  T  R  K  K  I  I  L  S  S  S  A  C  L  I  R  T  I  S  G  K  *  M  F  *  L  L  L  *  R  K  L  C  T  *  I  L  C  I  K  R  I  H  Q  L  R  Y  H  V  L  *  I  K  N  H  P  S  Y  N  T  R  T  L  R  Y  L  N  R  *  *  N  K  N  H  F  *  I  L  H  F  I  R  L  R  L  H  *  S  H  M  F  K  G  K  L  T  A  I  H  H  V  Q  R  K  D  *  T  M  K  E  R  R  K  H  G  H  L  R  V  K  L  E  I  V  T  K  I  Q  R  P  *  Q  S  L  T  V  M  V  *  K  K  I  E  S  Q  F  R  E  E  K  S  *  R  T  H  A  K  C  T  Q  S  F  L  L  H  H  L  Y  R  N  L  H  Q  I  H  G  F  A  A  L  C  L  L  Y  P  Q  R  M  H  L  H  G  L  I  S  G  Q  D  *  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56067" stop="56726"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTYSTYANDPYNNMTMLSTNAKENNPELKCLSDQNNIREVDVLTPFVEKTLYIDIVHKTDSSVKISCSLDKKPSKLQHKDVEILEQMIKQKPFLDSSLYSSETSLKPYVQRKADCNPPRSAERLNNERETKAWTSTGQARDCYQDTTTLAKSDSDGVEKNRKPIPRREKLEDSCKVHPEFLAPPPLPKSPSDSWLCRTLPSLSTKNASSRAYIGTGLNPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65189" PGL_stop="67800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65189" e_stop="66727"/>
            <exon e_start="66802" e_stop="66870"/>
            <exon e_start="67536" e_stop="67800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.957"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.986"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="65189" e_stop="66727" e_length="1539"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66728" i_stop="66801" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="66802" e_stop="66870" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66871" i_stop="67535" i_length="665"/>
          </intron>
          <exon e_serial="3" e_score="0.906">
            <gDNA_exon_boundary e_start="67536" e_stop="67800" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65189" stop="65971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65189" stop="65842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65247" stop="65688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65364" stop="66159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65364" stop="65945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65947" stop="66621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66503" stop="66727"/>
              <exon start="66802" stop="66870"/>
              <exon start="67536" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGACCTGAAACTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTGCACTAGATGAGTCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAATGTAAATGCTGGGGACACGAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAACAAAATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTTGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTATTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACTGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTGAAGTTAGAACTACGTGATAGGGTGGATAATCTATTCAAATTTTTTCACAAATTGTCCAGCTTTAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTTAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTTGGTCTTGGGCAG : GCAAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAG : GTTCGAGAAGCTCAGGAGGCATTATCTGAGAGCAGCAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTGTAAGGCTGTGTAGCTTTCTAGTTTTGTTATGTAAAGTTTAAGATGACAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAACTTTTCCTTAATGTAAACAGCATTGGAACTTATATGATTTTCAATATATTTTTC</gDNA_template>
            <first_frame> M  D  L  K  L  E  I  F  S  L  G  D  V  S  K  T  V  G  K  L  L  T  D  M  S  S  L  Y  D  V  G  R  R  K  R  S  A  G  L  L  L  I  D  R  T  L  D  L  L  T  P  C  C  H  G  D  S  L  V  D  Q  M  F  S  S  L  P  H  R  E  R  M  A  S  L  S  Q  A  K  S  S  R  S  Q  V  K  L  G  P  A  Y  L  Q  R  S  P  L  T  V  Q  I  P  L  N  N  F  L  R  E  D  T  S  S  S  Y  N  F  Q  L  V  E  S  V  E  A  F  L  R  G  W  N  S  R  D  S  T  S  Q  M  D  E  L  V  N  F  S  T  K  P  S  G  E  M  S  T  Q  D  F  Q  S  D  L  L  C  G  S  F  V  S  T  E  N  F  H  G  T  P  Y  L  E  A  I  L  E  R  R  S  K  D  G  A  V  L  I  K  K  W  L  Q  E  S  L  R  R  E  N  V  S  L  N  A  K  I  R  P  G  Y  A  S  K  S  D  L  Q  T  M  I  K  A  L  A  K  S  Q  S  L  L  A  K  N  K  G  I  I  Q  L  A  A  A  A  L  S  A  L  D  E  S  H  S  A  K  W  D  A  F  S  S  A  E  K  I  L  N  V  N  A  G  D  T  S  Q  S  L  A  A  Q  I  S  D  L  I  N  K  S  A  L  V  S  S  Q  G  N  N  K  M  D  A  Q  R  G  L  L  T  L  Q  D  A  L  L  L  T  V  V  G  Y  I  L  A  G  E  N  F  P  S  S  G  T  V  G  P  F  S  W  Q  E  E  H  F  M  K  E  A  I  V  D  A  I  I  E  N  P  T  V  A  K  L  K  F  L  K  G  L  T  Q  D  L  E  A  N  F  N  R  K  S  E  E  K  K  E  D  L  S  N  T  E  S  I  D  F  D  D  D  D  W  G  S  W  G  D  E  D  S  G  K  D  K  R  K  E  Q  V  Y  D  D  M  Q  L  K  L  E  L  R  D  R  V  D  N  L  F  K  F  F  H  K  L  S  S  F  K  K  N  V  S  F  R  E  W  S  Q  A  L  S  K  F  N  D  D  P  Y  S  N  K  G  L  L  Y  K  V  L  S  R  V  L  D  K  H  E  V  P  G  L  E  Y  H  S  S  T  V  G  R  L  F  K  S  G  F  G  R  F  G  L  G  Q  :  A  K  P  S  L  A  D  H  D  V  I  L  V  F  V  V  G  G  I  N  G  V  E  :  V  R  E  A  Q  E  A  L  S  E  S  S  R  P  E  V  E  L  I  L  G  G  T  T  F  L  T  P  K  D  M  F  E  L  L  L  G  D  Y  C  C  V  *  G  C  V  A  F  *  F  C  Y  V  K  F  K  M  T  S  S  V  *  C  L  I  F  R  E  Y  K  T  F  P  *  C  K  Q  H  W  N  L  Y  D  F  Q  Y  I  F  </first_frame>
            <second_frame>  W  T  *  N  L  R  Y  F  P  W  V  M  F  Q  K  L  L  E  S  F  *  Q  T  C  Q  V  F  M  M  L  V  D  V  R  D  L  Q  G  Y  Y  S  L  T  A  L  L  T  F  L  L  H  A  V  M  G  I  H  L  W  I  K  C  F  H  H  C  L  T  E  N  G  W  H  P  *  V  K  L  K  A  P  E  A  R  L  N  *  A  L  L  T  Y  S  V  H  P  S  P  Y  R  Y  H  S  I  I  S  *  E  R  I  L  Q  V  L  T  T  F  S  W  W  K  A  L  K  H  F  S  V  V  G  I  Q  E  T  Q  L  L  R  W  T  S  W  *  I  L  A  L  N  L  V  V  K  C  P  H  K  I  F  R  V  T  F  F  V  V  L  S  S  L  R  K  I  F  M  E  H  R  T  *  K  P  Y  *  S  E  D  Q  K  M  G  P  C  *  S  R  N  G  C  K  K  V  Y  V  E  K  M  Y  H  *  M  Q  K  S  V  L  V  M  L  Q  N  Q  I  C  R  L  *  L  R  H  *  L  K  A  S  H  C  W  R  K  T  K  E  L  S  S  *  L  Q  Q  H  Y  L  H  *  M  S  H  I  V  L  N  G  M  H  L  A  V  L  R  R  Y  *  M  *  M  L  G  T  R  A  K  V  L  L  L  K  L  V  I  S  *  I  K  V  R  *  L  V  H  R  V  I  T  K  W  M  L  N  G  G  F  L  L  Y  K  M  L  C  Y  S  Q  L  L  D  I  Y  W  Q  V  R  I  S  H  L  L  G  L  L  V  L  S  L  G  K  R  N  I  L  *  K  K  Q  L  L  M  R  L  L  R  T  Q  Q  L  R  N  *  S  F  *  K  V  *  L  R  I  *  K  P  T  L  T  E  N  Q  K  R  R  R  K  I  F  L  I  L  K  A  L  I  L  M  M  T  I  G  V  V  G  V  M  K  I  L  E  K  I  K  E  K  S  K  C  M  M  T  C  N  *  S  *  N  Y  V  I  G  W  I  I  Y  S  N  F  F  T  N  C  P  A  L  K  R  M  F  H  S  E  S  G  H  R  L  L  V  S  S  M  M  I  L  T  Q  T  K  D  C  F  I  K  C  Y  Q  G  C  *  I  S  M  K  Y  L  A  *  S  I  I  H  L  L  L  A  A  Y  S  K  A  G  L  G  D  L  V  L  G  R :   Q  N  Q  V  W  Q  I  T  M  L  F  S  C  L  L  W  E  A  *  M  V  *  R :   F  E  K  L  R  R  H  Y  L  R  A  A  G  L  K  S  N  *  F  *  V  E  Q  L  F  L  H  L  K  I  C  L  N  Y  C  W  A  I  I  V  V  C  K  A  V  *  L  S  S  F  V  M  *  S  L  R  *  Q  V  L  S  N  V  *  Y  L  E  N  T  K  L  F  L  N  V  N  S  I  G  T  Y  M  I  F  N  I  F  F </second_frame>
            <third_frame>   G  P  E  T  *  D  I  F  P  G  *  C  F  K  N  C  W  K  A  S  N  R  H  V  K  S  L  *  C  W  S  T  *  E  I  C  R  A  I  T  H  *  P  H  S  *  P  S  Y  S  M  L  S  W  G  F  T  C  G  S  N  V  F  I  I  A  S  Q  R  T  D  G  I  L  K  S  S  *  K  L  P  K  P  G  *  T  R  P  C  L  L  T  A  F  T  P  H  R  T  D  T  T  Q  *  F  P  K  R  G  Y  F  K  F  L  Q  L  S  A  G  G  K  R  *  S  I  S  P  W  L  E  F  K  R  L  N  F  S  D  G  R  V  G  E  F  *  H  *  T  *  W  *  N  V  H  T  R  F  S  E  *  P  S  L  W  F  F  R  L  Y  G  K  F  S  W  N  T  V  P  R  S  H  T  R  A  K  I  K  R  W  G  R  A  D  Q  E  M  A  A  R  K  F  T  S  R  K  C  I  I  E  C  K  N  P  S  W  L  C  F  K  I  R  S  A  D  Y  D  *  G  I  S  *  K  P  V  T  A  G  E  K  Q  R  N  Y  P  A  S  C  S  S  T  I  C  T  R  *  V  T  *  C  *  M  G  C  I  *  Q  C  *  E  D  T  E  C  K  C  W  G  H  E  P  K  S  C  C  S  N  *  *  S  H  K  *  K  C  V  S  *  F  T  G  *  *  Q  N  G  C  S  T  G  A  S  Y  S  T  R  C  S  A  T  H  S  C  W  I  Y  I  G  R  *  E  F  P  I  F  W  D  C  W  S  F  L  L  A  R  G  T  F  Y  E  R  S  N  C  *  C  D  Y  *  E  P  N  S  C  E  I  K  V  S  E  R  F  N  S  G  S  R  S  Q  L  *  Q  K  I  R  R  E  E  G  R  S  F  *  Y  *  K  H  *  F  *  *  *  R  L  G  *  L  G  *  *  R  F  W  K  R  *  K  K  R  A  S  V  *  *  H  A  I  E  V  R  T  T  *  *  G  G  *  S  I  Q  I  F  S  Q  I  V  Q  L  *  K  E  C  F  I  Q  R  V  V  T  G  S  *  *  V  Q  *  *  S  L  L  K  Q  R  T  A  L  *  S  A  I  K  G  V  R  *  A  *  S  T  W  L  R  V  S  F  I  Y  C  W  P  P  I  Q  K  R  V  W  E  I  W  S  W  A   : G  K  T  K  S  G  R  S  R  C  Y  S  R  V  C  C  G  R  H  K  W  C  R   : G  S  R  S  S  G  G  I  I  *  E  Q  Q  A  *  S  R  I  N  F  R  W  N  N  F  S  Y  T  *  R  Y  V  *  T  T  A  G  R  L  L  L  C  V  R  L  C  S  F  L  V  L  L  C  K  V  *  D  D  K  F  C  L  M  S  D  I  *  R  I  Q  N  F  S  L  M  *  T  A  L  E  L  I  *  F  S  I  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65189" stop="66727"/>
                    <exon start="66802" stop="66870"/>
                    <exon start="67536" stop="67664"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDLKLEIFSLGDVSKTVGKLLTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDQMFSSLPHRERMASLSQAKSSRSQVKLGPAYLQRSPLTVQIPLNNFLREDTSSSYNFQLVESVEAFLRGWNSRDSTSQMDELVNFSTKPSGEMSTQDFQSDLLCGSFVSTENFHGTPYLEAILERRSKDGAVLIKKWLQESLRRENVSLNAKIRPGYASKSDLQTMIKALAKSQSLLAKNKGIIQLAAAALSALDESHSAKWDAFSSAEKILNVNAGDTSQSLAAQISDLINKSALVSSQGNNKMDAQRGLLTLQDALLLTVVGYILAGENFPSSGTVGPFSWQEEHFMKEAIVDAIIENPTVAKLKFLKGLTQDLEANFNRKSEEKKEDLSNTESIDFDDDDWGSWGDEDSGKDKRKEQVYDDMQLKLELRDRVDNLFKFFHKLSSFKKNVSFREWSQALSKFNDDPYSNKGLLYKVLSRVLDKHEVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADHDVILVFVVGGINGVEVREAQEALSESSRPEVELILGGTTFLTPKDMFELLLGDYCCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="66258" PGL_stop="65926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66258" e_stop="65926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="66258" e_stop="65926" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66258" stop="65926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGCATCAACAATTGCTTCTTTCATAAAATGTTCCTCTTGCCAAGAGAAAGGACCAACAGTCCCAGAAGATGGGAAATTCTCACCTGCCAATATATATCCAACAACTGTGAGTAGCAGAGCATCTTGTAGAGTAAGAAGCCCCCGTTGAGCATCCATTTTGTTATTACCCTGTGAACTAACTAACGCACTTTTATTTATGAGATCACTAATTTGAGCAGCAAGACTTTGGCTCGTGTCCCCAGCATTTACATTCAGTATCTTCTCAGCACTGCTAAATGCATCCCATTTAGCACTATGTGACTCATCTAGTGCAGATAGTGCTGCTGCAGCT</gDNA_template>
            <first_frame> I  A  S  T  I  A  S  F  I  K  C  S  S  C  Q  E  K  G  P  T  V  P  E  D  G  K  F  S  P  A  N  I  Y  P  T  T  V  S  S  R  A  S  C  R  V  R  S  P  R  *  A  S  I  L  L  L  P  C  E  L  T  N  A  L  L  F  M  R  S  L  I  *  A  A  R  L  W  L  V  S  P  A  F  T  F  S  I  F  S  A  L  L  N  A  S  H  L  A  L  C  D  S  S  S  A  D  S  A  A  A  A </first_frame>
            <second_frame>  S  H  Q  Q  L  L  L  S  *  N  V  P  L  A  K  R  K  D  Q  Q  S  Q  K  M  G  N  S  H  L  P  I  Y  I  Q  Q  L  *  V  A  E  H  L  V  E  *  E  A  P  V  E  H  P  F  C  Y  Y  P  V  N  *  L  T  H  F  Y  L  *  D  H  *  F  E  Q  Q  D  F  G  S  C  P  Q  H  L  H  S  V  S  S  Q  H  C  *  M  H  P  I  *  H  Y  V  T  H  L  V  Q  I  V  L  L  Q   </second_frame>
            <third_frame>   R  I  N  N  C  F  F  H  K  M  F  L  L  P  R  E  R  T  N  S  P  R  R  W  E  I  L  T  C  Q  Y  I  S  N  N  C  E  *  Q  S  I  L  *  S  K  K  P  P  L  S  I  H  F  V  I  T  L  *  T  N  *  R  T  F  I  Y  E  I  T  N  L  S  S  K  T  L  A  R  V  P  S  I  Y  I  Q  Y  L  L  S  T  A  K  C  I  P  F  S  T  M  *  L  I  *  C  R  *  C  C  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83679" PGL_stop="84457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83679" e_stop="84457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="83679" e_stop="84457" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83679" stop="84457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83679" stop="84194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACGCTGCAAATTGTTTCCGTGTGATATTGTTGCCAATCTGTGTTATGAAAATCAAAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAAAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGGAATACTTTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGAAATATAACCTCCCAGGGTAAAATGATATTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAGAAAATTTGTAGGGAAATATTCTAAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCGTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAATTTTTAAATATAATGGAATTCAAAACGGGTCACGCACGCGAATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGGACATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCG</gDNA_template>
            <first_frame> R  R  C  K  L  F  P  C  D  I  V  A  N  L  C  Y  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  K  I  Y  L  *  K  I  I  E  S  V  K  L  T  R  I  W  N  T  F  F  D  N  L  G  R  K  S  S  P  L  N  S  Q  C  P  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  E  I  *  P  P  R  V  K  *  Y  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  M  C  F  *  E  E  G  R  S  E  N  L  *  G  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  R  E  S  C  N  L  S  E  Q  S  W  R  E  F  L  N  I  M  E  F  K  T  G  H  A  R  E  S  E  S  G  R  V  N  *  K  V  E  N  I  S  V  N  F  C  Y  Q  L  I  N  *  K  *  F  L  D  I  *  L  I  K  *  I  N  K  I  N  L  S  K  K  L  S  L  D   </first_frame>
            <second_frame>  D  A  A  N  C  F  R  V  I  L  L  P  I  C  V  M  K  I  K  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  L  N  L  *  N  L  P  E  S  G  I  L  F  L  I  I  *  E  E  N  Q  V  H  *  I  H  S  V  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  K  Y  N  L  P  G  *  N  D  I  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  N  R  K  V  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  C  R  E  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  I  L  K  G  C  N  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  V  K  V  A  T  F  Q  N  S  H  G  G  N  F  *  I  *  W  N  S  K  R  V  T  H  A  N  P  S  R  V  G  L  T  K  K  L  K  T  F  R  L  T  S  V  I  N  *  L  I  E  N  N  F  W  T  F  N  *  L  N  K  *  I  K  *  I  C  P  K  N  Y  L  S  I  </second_frame>
            <third_frame>   T  L  Q  I  V  S  V  *  Y  C  C  Q  S  V  L  *  K  S  K  I  T  G  C  N  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  K  N  L  F  V  K  N  N  *  I  C  K  T  Y  Q  N  L  E  Y  F  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  S  P  L  R  K  L  F  P  S  S  I  R  G  L  I  *  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  T  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  R  K  F  V  G  K  Y  S  K  D  *  M  V  F  I  G  K  K  N  I  F  *  K  V  A  T  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  M  A  G  I  F  K  Y  N  G  I  Q  N  G  S  R  T  R  I  R  V  G  S  G  *  L  K  S  *  K  H  F  G  *  L  L  L  S  T  N  *  L  K  I  I  F  G  H  L  I  N  *  I  N  K  *  N  K  F  V  Q  K  I  I  S  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85546" PGL_stop="89560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85546" e_stop="85704"/>
            <exon e_start="87500" e_stop="87543"/>
            <exon e_start="88840" e_stop="88948"/>
            <exon e_start="89138" e_stop="89193"/>
            <exon e_start="89306" e_stop="89560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="0.987"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.191" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="85546" e_stop="85704" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="85705" i_stop="87499" i_length="1795"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87500" e_stop="87543" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87544" i_stop="88839" i_length="1296"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88948" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.191" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88949" i_stop="89137" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89138" e_stop="89193" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89194" i_stop="89305" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="89306" e_stop="89560" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85546" stop="85704"/>
              <exon start="87500" stop="87543"/>
              <exon start="88840" stop="88948"/>
              <exon start="89138" stop="89193"/>
              <exon start="89306" stop="89546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85585" stop="85704"/>
              <exon start="87500" stop="87543"/>
              <exon start="88840" stop="88948"/>
              <exon start="89138" stop="89193"/>
              <exon start="89306" stop="89546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89349" stop="89560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCACAACTGACCAAAAAAATCAATTCTTGTTTTGTGGGTTTTGTTGATTTTCCATTGAAAAATGGGAAGGATATTTGTTGTAGATCTTGAAGGCAGGATTTACAAGTGCAAATTCTGCCAAACCCACCTTGCTCTTGCTGATGACCTTGTTTCTAGG : GGATTTCATTGCCGCAGAGGAAAAGCCTACTTGTTCAATAAAGT : GGTGAACGTAACTGTTGGACCTCAGGAGGAGAGAGCGATGCTTTCTGGGATGCACACAGTAGCAGATATATTTTGTTGCTGTTGCGGGCAAATTGTTGGCTGGAAATAT : GAGGCTGCACACGAGGAAAGCCAGAAGTATAAAGAAAAGAAGTTTGTTCTCGAAAG : GGGTAGGATCATTGACGGAGTTGACACTGAATTCTACATCGATTCTCGTCCAACTATTAGTGATACTGAGGATGCATAGGCCTTGTTATGTGATGTATCTATCTAAACATGTGTGGTTGTTGTATCTTGTAAGTCTAGTTTGTAGATATAGGGAAGAAGCTGTTTGTATCAAAATATTGTGTGGTTGTAGCTTGTAAGTCCAGTTTGCTAGACGCTAGTATATAAAGAAGGTTATACATAAGTTTTTGGTCTACA</gDNA_template>
            <first_frame> S  H  N  *  P  K  K  S  I  L  V  L  W  V  L  L  I  F  H  *  K  M  G  R  I  F  V  V  D  L  E  G  R  I  Y  K  C  K  F  C  Q  T  H  L  A  L  A  D  D  L  V  S  R  :  G  F  H  C  R  R  G  K  A  Y  L  F  N  K  V :   V  N  V  T  V  G  P  Q  E  E  R  A  M  L  S  G  M  H  T  V  A  D  I  F  C  C  C  C  G  Q  I  V  G  W  K  Y  :  E  A  A  H  E  E  S  Q  K  Y  K  E  K  K  F  V  L  E  R :   G  R  I  I  D  G  V  D  T  E  F  Y  I  D  S  R  P  T  I  S  D  T  E  D  A  *  A  L  L  C  D  V  S  I  *  T  C  V  V  V  V  S  C  K  S  S  L  *  I  *  G  R  S  C  L  Y  Q  N  I  V  W  L  *  L  V  S  P  V  C  *  T  L  V  Y  K  E  G  Y  T  *  V  F  G  L   </first_frame>
            <second_frame>  L  T  T  D  Q  K  N  Q  F  L  F  C  G  F  C  *  F  S  I  E  K  W  E  G  Y  L  L  *  I  L  K  A  G  F  T  S  A  N  S  A  K  P  T  L  L  L  L  M  T  L  F  L  G :   D  F  I  A  A  E  E  K  P  T  C  S  I  K   : W  *  T  *  L  L  D  L  R  R  R  E  R  C  F  L  G  C  T  Q  *  Q  I  Y  F  V  A  V  A  G  K  L  L  A  G  N  M :   R  L  H  T  R  K  A  R  S  I  K  K  R  S  L  F  S  K   : G  V  G  S  L  T  E  L  T  L  N  S  T  S  I  L  V  Q  L  L  V  I  L  R  M  H  R  P  C  Y  V  M  Y  L  S  K  H  V  W  L  L  Y  L  V  S  L  V  C  R  Y  R  E  E  A  V  C  I  K  I  L  C  G  C  S  L  *  V  Q  F  A  R  R  *  Y  I  K  K  V  I  H  K  F  L  V  Y  </second_frame>
            <third_frame>   S  Q  L  T  K  K  I  N  S  C  F  V  G  F  V  D  F  P  L  K  N  G  K  D  I  C  C  R  S  *  R  Q  D  L  Q  V  Q  I  L  P  N  P  P  C  S  C  *  *  P  C  F  *   : G  I  S  L  P  Q  R  K  S  L  L  V  Q  *  S  :  G  E  R  N  C  W  T  S  G  G  E  S  D  A  F  W  D  A  H  S  S  R  Y  I  L  L  L  L  R  A  N  C  W  L  E  I   : *  G  C  T  R  G  K  P  E  V  *  R  K  E  V  C  S  R  K  :  G  *  D  H  *  R  S  *  H  *  I  L  H  R  F  S  S  N  Y  *  *  Y  *  G  C  I  G  L  V  M  *  C  I  Y  L  N  M  C  G  C  C  I  L  *  V  *  F  V  D  I  G  K  K  L  F  V  S  K  Y  C  V  V  V  A  C  K  S  S  L  L  D  A  S  I  *  R  R  L  Y  I  S  F  W  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85606" stop="85704"/>
                    <exon start="87500" stop="87543"/>
                    <exon start="88840" stop="88948"/>
                    <exon start="89138" stop="89193"/>
                    <exon start="89306" stop="89384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGRIFVVDLEGRIYKCKFCQTHLALADDLVSRGFHCRRGKAYLFNKVVNVTVGPQEERAMLSGMHTVADIFCCCCGQIVGWKYEAAHEESQKYKEKKFVLERGRIIDGVDTEFYIDSRPTISDTEDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88902" stop="88948"/>
                    <exon start="89138" stop="89193"/>
                    <exon start="89306" stop="89502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIYFVAVAGKLLAGNMRLHTRKARSIKKRSLFSKGVGSLTELTLNSTSILVQLLVILRMHRPCYVMYLSKHVWLLYLVSLVCRYREEAVCIKILCGCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93029" PGL_stop="92309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93029" e_stop="92309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="93029" e_stop="92309" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93029" stop="92309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTCAAAACAAAGCCAACCATTCAAGTTATTGCACAAGTTCAAATGTTAATTATTAATAATTGTAATCGCATAAACAGATACATGTCAATGTTCATATACATATTTGCGGACATACTTACACATACATACATATAGAATGTGCATTGTGTATAGATGATAGAGAGAGAAAACATACAGAGAGCAAGCAAAGAAGAGGACAAAGAGGGAGGCATAATTCCGAGCATAGCGTTTCACATTCTCGTGTACTCTAAGCCGAGCCTGAGACGGCGACGAAGGAAATGAGTAGGAATCGAATGACCCGACGAATTGGAGGGTCCACGACGGGGTATCACCGGAAAAGTCATCAGATGTGAGTTTTGCAAACGGATTAAGCGTTAAAAGCGATAATAAGGTTCCAATACGTGAAAATATTAGAACGAAGACTCCATTTGAAATTGACACCGCGGCTGCAGCAGAATTAGTAACAGCAGCGTCGGAGGAAGCAGTCGTCGCCGCCACGGTGGTGGTGGAGGAGTGGCGGTGGAGATCGGTGGTCCGTTGATCGAGAATTTCGAGGTAGCCAGTATCTCGGAGCCAGGATTCGAATACGGGTTCGGGTACACTCAGAGATAACGGGTTAGCTGAGAACGCCATTTTTGTTTACCTTCCTCTTTGAAGGAATTTTTTTTCCAGGTATTTATCTGTAGCGTTTGGTGGGAAATCTTATGAGCTTTGTGATT</gDNA_template>
            <first_frame> C  S  K  Q  S  Q  P  F  K  L  L  H  K  F  K  C  *  L  L  I  I  V  I  A  *  T  D  T  C  Q  C  S  Y  T  Y  L  R  T  Y  L  H  I  H  T  Y  R  M  C  I  V  Y  R  *  *  R  E  K  T  Y  R  E  Q  A  K  K  R  T  K  R  E  A  *  F  R  A  *  R  F  T  F  S  C  T  L  S  R  A  *  D  G  D  E  G  N  E  *  E  S  N  D  P  T  N  W  R  V  H  D  G  V  S  P  E  K  S  S  D  V  S  F  A  N  G  L  S  V  K  S  D  N  K  V  P  I  R  E  N  I  R  T  K  T  P  F  E  I  D  T  A  A  A  A  E  L  V  T  A  A  S  E  E  A  V  V  A  A  T  V  V  V  E  E  W  R  W  R  S  V  V  R  *  S  R  I  S  R  *  P  V  S  R  S  Q  D  S  N  T  G  S  G  T  L  R  D  N  G  L  A  E  N  A  I  F  V  Y  L  P  L  *  R  N  F  F  S  R  Y  L  S  V  A  F  G  G  K  S  Y  E  L  C  D  </first_frame>
            <second_frame>  V  Q  N  K  A  N  H  S  S  Y  C  T  S  S  N  V  N  Y  *  *  L  *  S  H  K  Q  I  H  V  N  V  H  I  H  I  C  G  H  T  Y  T  Y  I  H  I  E  C  A  L  C  I  D  D  R  E  R  K  H  T  E  S  K  Q  R  R  G  Q  R  G  R  H  N  S  E  H  S  V  S  H  S  R  V  L  *  A  E  P  E  T  A  T  K  E  M  S  R  N  R  M  T  R  R  I  G  G  S  T  T  G  Y  H  R  K  S  H  Q  M  *  V  L  Q  T  D  *  A  L  K  A  I  I  R  F  Q  Y  V  K  I  L  E  R  R  L  H  L  K  L  T  P  R  L  Q  Q  N  *  *  Q  Q  R  R  R  K  Q  S  S  P  P  R  W  W  W  R  S  G  G  G  D  R  W  S  V  D  R  E  F  R  G  S  Q  Y  L  G  A  R  I  R  I  R  V  R  V  H  S  E  I  T  G  *  L  R  T  P  F  L  F  T  F  L  F  E  G  I  F  F  P  G  I  Y  L  *  R  L  V  G  N  L  M  S  F  V  I </second_frame>
            <third_frame>   F  K  T  K  P  T  I  Q  V  I  A  Q  V  Q  M  L  I  I  N  N  C  N  R  I  N  R  Y  M  S  M  F  I  Y  I  F  A  D  I  L  T  H  T  Y  I  *  N  V  H  C  V  *  M  I  E  R  E  N  I  Q  R  A  S  K  E  E  D  K  E  G  G  I  I  P  S  I  A  F  H  I  L  V  Y  S  K  P  S  L  R  R  R  R  R  K  *  V  G  I  E  *  P  D  E  L  E  G  P  R  R  G  I  T  G  K  V  I  R  C  E  F  C  K  R  I  K  R  *  K  R  *  *  G  S  N  T  *  K  Y  *  N  E  D  S  I  *  N  *  H  R  G  C  S  R  I  S  N  S  S  V  G  G  S  S  R  R  R  H  G  G  G  G  G  V  A  V  E  I  G  G  P  L  I  E  N  F  E  V  A  S  I  S  E  P  G  F  E  Y  G  F  G  Y  T  Q  R  *  R  V  S  *  E  R  H  F  C  L  P  S  S  L  K  E  F  F  F  Q  V  F  I  C  S  V  W  W  E  I  L  *  A  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92741" stop="92487"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESNDPTNWRVHDGVSPEKSSDVSFANGLSVKSDNKVPIRENIRTKTPFEIDTAAAAELVTAASEEAVVAATVVVEEWRWRSVVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="92391" PGL_stop="97297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92391" e_stop="92852"/>
            <exon e_start="93500" e_stop="93636"/>
            <exon e_start="96708" e_stop="96779"/>
            <exon e_start="96875" e_stop="97297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92391" e_stop="92852" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="93500" e_stop="93636" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96708" e_stop="96779" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96875" e_stop="97297" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92414" stop="92852"/>
              <exon start="93500" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92414" stop="92693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92416" stop="92852"/>
              <exon start="93500" stop="93534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92416" stop="92694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92446" stop="92852"/>
              <exon start="93500" stop="93576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92464" stop="92852"/>
              <exon start="93500" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="96920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93509" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="97285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93509" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="97267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93531" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="97269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588580" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93594" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="97297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT : GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG : CTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG : TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTCTGGCTCATGAGTGCATCTCTCCATATGAAACGGAGAATTCTTCGAGTCACAATGTAAGAAAAGTTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTAGTAACACATTTATTAATCTTTGACTGAATA</gDNA_template>
            <first_frame> K  N  G  V  L  S  *  P  V  I  S  E  C  T  R  T  R  I  R  I  L  A  P  R  Y  W  L  P  R  N  S  R  S  T  D  H  R  S  P  P  P  L  L  H  H  H  R  G  G  D  D  C  F  L  R  R  C  C  Y  *  F  C  C  S  R  G  V  N  F  K  W  S  L  R  S  N  I  F  T  Y  W  N  L  I  I  A  F  N  A  *  S  V  C  K  T  H  I  *  *  L  F  R  *  Y  P  V  V  D  P  P  I  R  R  V  I  R  F  L  L  I  S  F  V  A  V  S  G  S  A  *  S  T  R  E  C  E  T  L  C  S  E  L  C  L  P  L  C  P  L  L  C  L  L  S  :  V  P  K  A  V  C  P  C  W  V  D  I  M  F  G  T  L  G  C  I  K  V  M  W  R  S  L  G  I  R  A  P  P  S  Y  Q  T  K  L  D  S  H  C  S  V  C :   Y  C  S  Y  S  I  L  Y  Q  R  S  N  G  S  L  L  S  S  C  G  Q  L  C  S :   D  D  S  A  C  L  I  *  E  A  D  P  L  K  T  I  N  F  K  R  S  E  Q  E  G  P  *  K  L  M  S  G  Y  Y  C  Q  V  I  Q  S  H  S  R  C  L  E  R  G  L  T  V  F  T  N  Y  S  I  R  V  W  L  M  S  A  S  L  H  M  K  R  R  I  L  R  V  T  M  *  E  K  F  L  L  *  F  D  F  F  L  G  C  V  Y  V  S  V  Q  W  E  K  K  R  L  D  K  I  S  D  G  C  R  T  L  K  R  I  G  T  A  K  A  L  F  F  Y  Y  M  N  *  Y  *  *  H  I  Y  *  S  L  T  E   </first_frame>
            <second_frame>  K  M  A  F  S  A  N  P  L  S  L  S  V  P  E  P  V  F  E  S  W  L  R  D  T  G  Y  L  E  I  L  D  Q  R  T  T  D  L  H  R  H  S  S  T  T  T  V  A  A  T  T  A  S  S  D  A  A  V  T  N  S  A  A  A  A  V  S  I  S  N  G  V  F  V  L  I  F  S  R  I  G  T  L  L  S  L  L  T  L  N  P  F  A  K  L  T  S  D  D  F  S  G  D  T  P  S  W  T  L  Q  F  V  G  S  F  D  S  Y  S  F  P  S  S  P  S  Q  A  R  L  R  V  H  E  N  V  K  R  Y  A  R  N  Y  A  S  L  F  V  L  F  F  A  C  S  L :   Y  Q  K  L  F  A  L  V  G  L  I  S  C  L  A  L  W  D  V  L  K  L  C  G  D  R  W  G  L  E  H  R  P  V  I  K  Q  S  L  I  R  I  A  Q  C   : A  T  A  V  I  L  F  C  T  N  V  Q  M  A  L  F  S  A  L  A  V  S  Y  V   : V  M  I  L  H  A  S  F  R  K  L  T  P  S  K  Q  S  T  S  K  E  V  N  R  R  V  L  R  S  *  *  V  V  I  I  V  K  S  Y  N  H  I  V  V  A  W  R  E  G  *  P  C  L  Q  T  I  A  F  E  S  G  S  *  V  H  L  S  I  *  N  G  E  F  F  E  S  Q  C  K  K  S  F  F  F  N  L  I  F  F  *  D  V  C  M  C  L  Y  N  G  K  K  K  D  *  I  R  F  Q  M  G  V  E  P  *  R  E  L  A  L  L  R  L  C  S  F  T  I  *  I  S  I  S  N  T  F  I  N  L  *  L  N  </second_frame>
            <third_frame>   K  W  R  S  Q  L  T  R  Y  L  *  V  Y  P  N  P  Y  S  N  P  G  S  E  I  L  A  T  S  K  F  S  I  N  G  P  P  I  S  T  A  T  P  P  P  P  P  W  R  R  R  L  L  P  P  T  L  L  L  L  I  L  L  Q  P  R  C  Q  F  Q  M  E  S  S  F  *  Y  F  H  V  L  E  P  Y  Y  R  F  *  R  L  I  R  L  Q  N  S  H  L  M  T  F  P  V  I  P  R  R  G  P  S  N  S  S  G  H  S  I  P  T  H  F  L  R  R  R  L  R  L  G  L  E  Y  T  R  M  *  N  A  M  L  G  I  M  P  P  S  L  S  S  S  L  L  A  L   : C  T  K  S  C  L  P  L  L  G  *  Y  H  V  W  H  F  G  M  Y  *  S  Y  V  E  I  A  G  D  *  S  T  A  Q  L  S  N  K  A  *  F  A  L  L  S  V  :  L  L  Q  L  F  Y  S  V  P  T  F  K  W  L  S  S  Q  L  L  R  S  V  M  *  :  *  *  F  C  M  P  H  L  G  S  *  P  P  Q  N  N  Q  L  Q  K  K  *  T  G  G  S  L  E  V  D  E  W  L  L  L  S  S  H  T  I  T  *  S  L  P  G  E  R  V  N  R  V  Y  K  L  *  H  S  S  L  A  H  E  C  I  S  P  Y  E  T  E  N  S  S  S  H  N  V  R  K  V  S  S  L  I  *  F  F  F  R  M  C  V  C  V  C  T  M  G  K  K  K  T  R  *  D  F  R  W  V  *  N  P  K  E  N  W  H  C  *  G  F  V  L  L  L  Y  E  L  V  L  V  T  H  L  L  I  F  D  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92392" stop="92852"/>
                    <exon start="93500" stop="93636"/>
                    <exon start="96708" stop="96779"/>
                    <exon start="96875" stop="96963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAFSANPLSLSVPEPVFESWLRDTGYLEILDQRTTDLHRHSSTTTVAATTASSDAAVTNSAAAAVSISNGVFVLIFSRIGTLLSLLTLNPFAKLTSDDFSGDTPSWTLQFVGSFDSYSFPSSPSQARLRVHENVKRYARNYASLFVLFFACSLYQKLFALVGLISCLALWDVLKLCGDRWGLEHRPVIKQSLIRIAQCATAVILFCTNVQMALFSALAVSYVVMILHASFRKLTPSKQSTSKEVNRRVLRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92391" e_stop="92852"/>
            <exon e_start="93500" e_stop="93644"/>
            <exon e_start="93740" e_stop="93751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.493" e_score="0.992"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92391" e_stop="92852" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="93500" e_stop="93644" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.493">
            <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="93740" e_stop="93751" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92403" stop="92852"/>
              <exon start="93500" stop="93638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92404" stop="92852"/>
              <exon start="93500" stop="93644"/>
              <exon start="93740" stop="93751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92414" stop="92693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92416" stop="92852"/>
              <exon start="93500" stop="93534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92416" stop="92694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92446" stop="92852"/>
              <exon start="93500" stop="93576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT : GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCG : CATTCTACCAGT</gDNA_template>
            <first_frame> K  N  G  V  L  S  *  P  V  I  S  E  C  T  R  T  R  I  R  I  L  A  P  R  Y  W  L  P  R  N  S  R  S  T  D  H  R  S  P  P  P  L  L  H  H  H  R  G  G  D  D  C  F  L  R  R  C  C  Y  *  F  C  C  S  R  G  V  N  F  K  W  S  L  R  S  N  I  F  T  Y  W  N  L  I  I  A  F  N  A  *  S  V  C  K  T  H  I  *  *  L  F  R  *  Y  P  V  V  D  P  P  I  R  R  V  I  R  F  L  L  I  S  F  V  A  V  S  G  S  A  *  S  T  R  E  C  E  T  L  C  S  E  L  C  L  P  L  C  P  L  L  C  L  L  S  :  V  P  K  A  V  C  P  C  W  V  D  I  M  F  G  T  L  G  C  I  K  V  M  W  R  S  L  G  I  R  A  P  P  S  Y  Q  T  K  L  D  S  H  C  S  V  W  *  V   : A  F  Y  Q  </first_frame>
            <second_frame>  K  M  A  F  S  A  N  P  L  S  L  S  V  P  E  P  V  F  E  S  W  L  R  D  T  G  Y  L  E  I  L  D  Q  R  T  T  D  L  H  R  H  S  S  T  T  T  V  A  A  T  T  A  S  S  D  A  A  V  T  N  S  A  A  A  A  V  S  I  S  N  G  V  F  V  L  I  F  S  R  I  G  T  L  L  S  L  L  T  L  N  P  F  A  K  L  T  S  D  D  F  S  G  D  T  P  S  W  T  L  Q  F  V  G  S  F  D  S  Y  S  F  P  S  S  P  S  Q  A  R  L  R  V  H  E  N  V  K  R  Y  A  R  N  Y  A  S  L  F  V  L  F  F  A  C  S  L :   Y  Q  K  L  F  A  L  V  G  L  I  S  C  L  A  L  W  D  V  L  K  L  C  G  D  R  W  G  L  E  H  R  P  V  I  K  Q  S  L  I  R  I  A  Q  C  G  E  S  :  H  S  T  S </second_frame>
            <third_frame>   K  W  R  S  Q  L  T  R  Y  L  *  V  Y  P  N  P  Y  S  N  P  G  S  E  I  L  A  T  S  K  F  S  I  N  G  P  P  I  S  T  A  T  P  P  P  P  P  W  R  R  R  L  L  P  P  T  L  L  L  L  I  L  L  Q  P  R  C  Q  F  Q  M  E  S  S  F  *  Y  F  H  V  L  E  P  Y  Y  R  F  *  R  L  I  R  L  Q  N  S  H  L  M  T  F  P  V  I  P  R  R  G  P  S  N  S  S  G  H  S  I  P  T  H  F  L  R  R  R  L  R  L  G  L  E  Y  T  R  M  *  N  A  M  L  G  I  M  P  P  S  L  S  S  S  L  L  A  L   : C  T  K  S  C  L  P  L  L  G  *  Y  H  V  W  H  F  G  M  Y  *  S  Y  V  E  I  A  G  D  *  S  T  A  Q  L  S  N  K  A  *  F  A  L  L  S  V  V  S  R :   I  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92392" stop="92852"/>
                    <exon start="93500" stop="93644"/>
                    <exon start="93740" stop="93751"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAFSANPLSLSVPEPVFESWLRDTGYLEILDQRTTDLHRHSSTTTVAATTASSDAAVTNSAAAAVSISNGVFVLIFSRIGTLLSLLTLNPFAKLTSDDFSGDTPSWTLQFVGSFDSYSFPSSPSQARLRVHENVKRYARNYASLFVLFFACSLYQKLFALVGLISCLALWDVLKLCGDRWGLEHRPVIKQSLIRIAQCGESHSTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="102334" PGL_stop="99431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102334" e_stop="101754"/>
            <exon e_start="99455" e_stop="99431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.619" e_score="0.990"/>
          <exon-only e_score="0.520"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="102334" e_stop="101754" e_length="581"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.619">
            <gDNA_intron_boundary i_start="101753" i_stop="99456" i_length="2298"/>
          </intron>
          <exon e_serial="2" e_score="0.520">
            <gDNA_exon_boundary e_start="99455" e_stop="99431" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102334" stop="101754"/>
              <exon start="99455" stop="99431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259615" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAAAAAAAGGGAAGTTGAAACTAGAAACTAATATGATAATTATAGTGAAGGAGTACTGAGTAGGATTGTACAATATTAAAGGTTTAACGAATTTATTGAACCATATATTAAAAAAAATAATTTATCGAAACATCAACATTAAAGGTTTAACGAATTTATTGAACCATATATTGAAAAAACCAATTTATCGAAACATCAACCTATTTTTTTTTAGAAGACCCACCGGAATTTAGGCTTTCGAGTTTTTCAAATTCTTTTGTTTGTCATAGTCCACAAAATTGTTTGGCATTTGAAAAGGTTGTTCACAACATTGGAACTATGATCATGGAAAAACTACTAAAAAACACATCTAATATTTTTATTATTTTTAATATTTCATTTTATTTTTGAAAATCTTTAATACTTCTTATTTCTTTAATGTATTCGAGCCAGTATTTACTGTAATTGAATTACATATTATGTATTTGATTTATTTTATCTGGTCCATTTTATAATGTATTCGAGCTACATATTATGTATTTAATTTATATTATAATGTATTCGAGATACTCTTTAATGTATCTGAGCTACATATTAAT : GAAAAATAAGTTTGTTTGTTTTTTT</gDNA_template>
            <first_frame> I  K  K  K  G  S  *  N  *  K  L  I  *  *  L  *  *  R  S  T  E  *  D  C  T  I  L  K  V  *  R  I  Y  *  T  I  Y  *  K  K  *  F  I  E  T  S  T  L  K  V  *  R  I  Y  *  T  I  Y  *  K  N  Q  F  I  E  T  S  T  Y  F  F  L  E  D  P  P  E  F  R  L  S  S  F  S  N  S  F  V  C  H  S  P  Q  N  C  L  A  F  E  K  V  V  H  N  I  G  T  M  I  M  E  K  L  L  K  N  T  S  N  I  F  I  I  F  N  I  S  F  Y  F  *  K  S  L  I  L  L  I  S  L  M  Y  S  S  Q  Y  L  L  *  L  N  Y  I  L  C  I  *  F  I  L  S  G  P  F  Y  N  V  F  E  L  H  I  M  Y  L  I  Y  I  I  M  Y  S  R  Y  S  L  M  Y  L  S  Y  I  L  M :   K  N  K  F  V  C  F  F </first_frame>
            <second_frame>  *  K  K  R  E  V  E  T  R  N  *  Y  D  N  Y  S  E  G  V  L  S  R  I  V  Q  Y  *  R  F  N  E  F  I  E  P  Y  I  K  K  N  N  L  S  K  H  Q  H  *  R  F  N  E  F  I  E  P  Y  I  E  K  T  N  L  S  K  H  Q  P  I  F  F  *  K  T  H  R  N  L  G  F  R  V  F  Q  I  L  L  F  V  I  V  H  K  I  V  W  H  L  K  R  L  F  T  T  L  E  L  *  S  W  K  N  Y  *  K  T  H  L  I  F  L  L  F  L  I  F  H  F  I  F  E  N  L  *  Y  F  L  F  L  *  C  I  R  A  S  I  Y  C  N  *  I  T  Y  Y  V  F  D  L  F  Y  L  V  H  F  I  M  Y  S  S  Y  I  L  C  I  *  F  I  L  *  C  I  R  D  T  L  *  C  I  *  A  T  Y  *   : *  K  I  S  L  F  V  F   </second_frame>
            <third_frame>   K  K  K  G  K  L  K  L  E  T  N  M  I  I  I  V  K  E  Y  *  V  G  L  Y  N  I  K  G  L  T  N  L  L  N  H  I  L  K  K  I  I  Y  R  N  I  N  I  K  G  L  T  N  L  L  N  H  I  L  K  K  P  I  Y  R  N  I  N  L  F  F  F  R  R  P  T  G  I  *  A  F  E  F  F  K  F  F  C  L  S  *  S  T  K  L  F  G  I  *  K  G  C  S  Q  H  W  N  Y  D  H  G  K  T  T  K  K  H  I  *  Y  F  Y  Y  F  *  Y  F  I  L  F  L  K  I  F  N  T  S  Y  F  F  N  V  F  E  P  V  F  T  V  I  E  L  H  I  M  Y  L  I  Y  F  I  W  S  I  L  *  C  I  R  A  T  Y  Y  V  F  N  L  Y  Y  N  V  F  E  I  L  F  N  V  S  E  L  H  I  N  :  E  K  *  V  C  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102157" stop="101942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQFIETSTYFFLEDPPEFRLSSFSNSFVCHSPQNCLAFEKVVHNIGTMIMEKLLKNTSNIFIIFNISFYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="100547" PGL_stop="100950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100547" e_stop="100950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="100547" e_stop="100950" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100547" stop="100950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATGAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</gDNA_template>
            <first_frame> E  N  E  V  L  V  P  M  S  M  L  F  L  F  L  F  H  E  A  P  K  R  K  T  K  S  Q  R  R  S  K  T  *  S  Q  S  *  R  S  K  T  *  R  *  E  G  R  R  R  K  T  K  R  E  R  R  K  Q  A  T  M  K  E  E  A  M  R  *  C  N  Y  I  L  C  S  Y  K  *  Y  C  S  S  F  T  S  S  L  K  Y  L  L  C  A  I  A  I  F  N  S  F  E  K  N  L  I  L  N  V  F  L  *  K  K  Y  L  H  F  I  H  Y  D  D  E  M  H  T  *  *  S  L  L  T  I  F   </first_frame>
            <second_frame>  R  M  K  F  L  F  Q  C  P  C  C  S  C  F  C  F  M  K  P  Q  K  G  K  P  K  A  K  E  E  A  K  P  K  A  K  V  E  E  A  K  P  K  D  K  K  V  E  E  E  K  P  K  E  K  E  E  S  K  P  Q  *  K  K  R  Q  *  D  N  A  T  I  Y  Y  A  H  T  S  N  I  V  L  H  L  L  L  V  *  N  I  Y  C  V  L  L  Q  S  L  T  L  L  R  K  T  S  S  *  M  Y  S  Y  K  K  N  I  C  T  L  F  T  M  M  M  K  C  I  P  S  S  H  Y  *  L  Y  L  </second_frame>
            <third_frame>   E  *  S  S  C  S  N  V  H  V  V  L  V  F  V  S  *  S  P  K  K  E  N  Q  K  P  K  K  K  Q  N  L  K  P  K  L  K  K  Q  N  L  K  I  R  R  *  K  K  K  N  Q  K  R  K  K  K  A  S  H  N  E  R  R  G  N  E  I  M  Q  L  Y  I  M  L  I  Q  V  I  L  F  F  I  Y  F  *  F  K  I  F  I  V  C  Y  C  N  L  *  L  F  *  E  K  P  H  P  K  C  I  L  I  K  K  I  F  A  L  Y  S  L  *  *  *  N  A  Y  L  V  V  I  I  N  Y  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101067" PGL_stop="102102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101067" e_stop="101077"/>
            <exon e_start="101754" e_stop="102102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.704" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="101067" e_stop="101077" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.704" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101078" i_stop="101753" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="101754" e_stop="102102" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101067" stop="101077"/>
              <exon start="101754" stop="102102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAAATTTCT : ATTAATATGTAGCTCAGATACATTAAAGAGTATCTCGAATACATTATAATATAAATTAAATACATAATATGTAGCTCGAATACATTATAAAATGGACCAGATAAAATAAATCAAATACATAATATGTAATTCAATTACAGTAAATACTGGCTCGAATACATTAAAGAAATAAGAAGTATTAAAGATTTTCAAAAATAAAATGAAATATTAAAAATAATAAAAATATTAGATGTGTTTTTTAGTAGTTTTTCCATGATCATAGTTCCAATGTTGTGAACAACCTTTTCAAATGCCAAACAATTTTGTGGACTATGACAAACAAAAGAATTTGAAAAACTCGAAAGCCTAA</gDNA_template>
            <first_frame> V  K  F  L :   L  I  C  S  S  D  T  L  K  S  I  S  N  T  L  *  Y  K  L  N  T  *  Y  V  A  R  I  H  Y  K  M  D  Q  I  K  *  I  K  Y  I  I  C  N  S  I  T  V  N  T  G  S  N  T  L  K  K  *  E  V  L  K  I  F  K  N  K  M  K  Y  *  K  *  *  K  Y  *  M  C  F  L  V  V  F  P  *  S  *  F  Q  C  C  E  Q  P  F  Q  M  P  N  N  F  V  D  Y  D  K  Q  K  N  L  K  N  S  K  A  * </first_frame>
            <second_frame>  L  N  F   : Y  *  Y  V  A  Q  I  H  *  R  V  S  R  I  H  Y  N  I  N  *  I  H  N  M  *  L  E  Y  I  I  K  W  T  R  *  N  K  S  N  T  *  Y  V  I  Q  L  Q  *  I  L  A  R  I  H  *  R  N  K  K  Y  *  R  F  S  K  I  K  *  N  I  K  N  N  K  N  I  R  C  V  F  *  *  F  F  H  D  H  S  S  N  V  V  N  N  L  F  K  C  Q  T  I  L  W  T  M  T  N  K  R  I  *  K  T  R  K  P   </second_frame>
            <third_frame>   *  I  S  :  I  N  M  *  L  R  Y  I  K  E  Y  L  E  Y  I  I  I  *  I  K  Y  I  I  C  S  S  N  T  L  *  N  G  P  D  K  I  N  Q  I  H  N  M  *  F  N  Y  S  K  Y  W  L  E  Y  I  K  E  I  R  S  I  K  D  F  Q  K  *  N  E  I  L  K  I  I  K  I  L  D  V  F  F  S  S  F  S  M  I  I  V  P  M  L  *  T  T  F  S  N  A  K  Q  F  C  G  L  *  Q  T  K  E  F  E  K  L  E  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="102239" PGL_stop="102852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102239" e_stop="102852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="102239" e_stop="102852" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102239" stop="102852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCGTTAAACCTTTAATATTGTACAATCCTACTCAGTACTCCTTCACTATAATTATCATATTAGTTTCTAGTTTCAACTTCCCTTTTTTTTTATGGACTCTGTCCATTCATGAATCTATCTATTATTATTGTACATCTCTTTCTCTTAGCCTTTGTTCTTAAAAGTAATCTTCTTTAACCACACCCCGGATTTGGTTATTCATAGTTTTTTTCTCAGAACATTTAACCTGACAATGTCCTAGGAATTTACAGGTTAATCCATCGATACTTTTAAGAAGCTAAGAGACTAACCATATACTAAGTAATATAGATTCATGATGATATTCATAAATTTACATGAATTTATCAAATAATTAACATTTTATAAACACACATAATTTACATATATGGGAAGTTTACTAGAAACATAAATATGAAAACTTACATTATTTAGAACAGAGTGAAGTTTCCCTTTCGGAAAACCCGAAAAGCTTCCAAACTTTTACTTAAAACAAACTTTTAGAATAAAGAACTGAAATCTTTATTACAATCTTTTAAAAGATAATTTTAAAGAGAAAAGGGGTTGTTTTGAGGATTTTGAGAGAGTTTTTGTTGTGGTTGTCTTAGACTTTT</gDNA_template>
            <first_frame> N  S  L  N  L  *  Y  C  T  I  L  L  S  T  P  S  L  *  L  S  Y  *  F  L  V  S  T  S  L  F  F  Y  G  L  C  P  F  M  N  L  S  I  I  I  V  H  L  F  L  L  A  F  V  L  K  S  N  L  L  *  P  H  P  G  F  G  Y  S  *  F  F  S  Q  N  I  *  P  D  N  V  L  G  I  Y  R  L  I  H  R  Y  F  *  E  A  K  R  L  T  I  Y  *  V  I  *  I  H  D  D  I  H  K  F  T  *  I  Y  Q  I  I  N  I  L  *  T  H  I  I  Y  I  Y  G  K  F  T  R  N  I  N  M  K  T  Y  I  I  *  N  R  V  K  F  P  F  R  K  T  R  K  A  S  K  L  L  L  K  T  N  F  *  N  K  E  L  K  S  L  L  Q  S  F  K  R  *  F  *  R  E  K  G  L  F  *  G  F  *  E  S  F  C  C  G  C  L  R  L   </first_frame>
            <second_frame>  I  R  *  T  F  N  I  V  Q  S  Y  S  V  L  L  H  Y  N  Y  H  I  S  F  *  F  Q  L  P  F  F  F  M  D  S  V  H  S  *  I  Y  L  L  L  L  Y  I  S  F  S  *  P  L  F  L  K  V  I  F  F  N  H  T  P  D  L  V  I  H  S  F  F  L  R  T  F  N  L  T  M  S  *  E  F  T  G  *  S  I  D  T  F  K  K  L  R  D  *  P  Y  T  K  *  Y  R  F  M  M  I  F  I  N  L  H  E  F  I  K  *  L  T  F  Y  K  H  T  *  F  T  Y  M  G  S  L  L  E  T  *  I  *  K  L  T  L  F  R  T  E  *  S  F  P  F  G  K  P  E  K  L  P  N  F  Y  L  K  Q  T  F  R  I  K  N  *  N  L  Y  Y  N  L  L  K  D  N  F  K  E  K  R  G  C  F  E  D  F  E  R  V  F  V  V  V  V  L  D  F  </second_frame>
            <third_frame>   F  V  K  P  L  I  L  Y  N  P  T  Q  Y  S  F  T  I  I  I  I  L  V  S  S  F  N  F  P  F  F  L  W  T  L  S  I  H  E  S  I  Y  Y  Y  C  T  S  L  S  L  S  L  C  S  *  K  *  S  S  L  T  T  P  R  I  W  L  F  I  V  F  F  S  E  H  L  T  *  Q  C  P  R  N  L  Q  V  N  P  S  I  L  L  R  S  *  E  T  N  H  I  L  S  N  I  D  S  *  *  Y  S  *  I  Y  M  N  L  S  N  N  *  H  F  I  N  T  H  N  L  H  I  W  E  V  Y  *  K  H  K  Y  E  N  L  H  Y  L  E  Q  S  E  V  S  L  S  E  N  P  K  S  F  Q  T  F  T  *  N  K  L  L  E  *  R  T  E  I  F  I  T  I  F  *  K  I  I  L  K  R  K  G  V  V  L  R  I  L  R  E  F  L  L  W  L  S  *  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109233" PGL_stop="110013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109233" e_stop="109251"/>
            <exon e_start="109387" e_stop="110013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.737"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.737">
            <gDNA_exon_boundary e_start="109233" e_stop="109251" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109252" i_stop="109386" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="109387" e_stop="110013" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109233" stop="109251"/>
              <exon start="109387" stop="109653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109473" stop="110013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCCTTTTATTTTCT : CTAAAAAAAGATATTATAACAACTAATACAATCTTGGTCGTGCTCAGCACGGGCAACCTTTGCTAGTAACTTAGAAACGAGGGTACATAACCAACTATATCGATCAAATTACAACAACAACAACAACATACTCCACGTAATCCACAAGTGGGTCAGGGGAGAGTAAACTGTATGCAAACCTTACTTCTACCTTCTAGAGGTAGAGAGGTTGTTTCTGATAGACCCTAGGTTCAAGGAAAAACATATCAAAGCAGCTAATCATGGAGTATTCTCCATGATACTCTGGATGAAACTTCCAATAGAAGTGTAAGAAGAGCCTCCTTCCGTGGTTGCTGCTCTGCTCTTCTCTTTCATCTCCTTCACTTTCATCCGAATTTTATTTTCAGGGTCCATAAGTTCTCTTATTGCTTTCTCAATCTCCTCTGCTTTCACTATAACTTTTTGGCCCATCTTCCCTGTTGGTTCCTTCCTGTAATCCATCTTTAGCTCGACTGCCATTTCCAAATCCTTAACCAACTGAAATGCATTTGCTTGCTGCTCTGCGTACATTGGCCAAGTAGCCATTGGCACTCCAAAATAGGTGCTTTCCAAAGTCGAATTCCATCCACAGTGCGACACAAAGCCACC</gDNA_template>
            <first_frame> F  F  P  F  I  F   : S  K  K  R  Y  Y  N  N  *  Y  N  L  G  R  A  Q  H  G  Q  P  L  L  V  T  *  K  R  G  Y  I  T  N  Y  I  D  Q  I  T  T  T  T  T  T  Y  S  T  *  S  T  S  G  S  G  E  S  K  L  Y  A  N  L  T  S  T  F  *  R  *  R  G  C  F  *  *  T  L  G  S  R  K  N  I  S  K  Q  L  I  M  E  Y  S  P  *  Y  S  G  *  N  F  Q  *  K  C  K  K  S  L  L  P  W  L  L  L  C  S  S  L  S  S  P  S  L  S  S  E  F  Y  F  Q  G  P  *  V  L  L  L  L  S  Q  S  P  L  L  S  L  *  L  F  G  P  S  S  L  L  V  P  S  C  N  P  S  L  A  R  L  P  F  P  N  P  *  P  T  E  M  H  L  L  A  A  L  R  T  L  A  K  *  P  L  A  L  Q  N  R  C  F  P  K  S  N  S  I  H  S  A  T  Q  S  H  </first_frame>
            <second_frame>  F  F  L  L  F  S  :  L  K  K  D  I  I  T  T  N  T  I  L  V  V  L  S  T  G  N  L  C  *  *  L  R  N  E  G  T  *  P  T  I  S  I  K  L  Q  Q  Q  Q  Q  H  T  P  R  N  P  Q  V  G  Q  G  R  V  N  C  M  Q  T  L  L  L  P  S  R  G  R  E  V  V  S  D  R  P  *  V  Q  G  K  T  Y  Q  S  S  *  S  W  S  I  L  H  D  T  L  D  E  T  S  N  R  S  V  R  R  A  S  F  R  G  C  C  S  A  L  L  F  H  L  L  H  F  H  P  N  F  I  F  R  V  H  K  F  S  Y  C  F  L  N  L  L  C  F  H  Y  N  F  L  A  H  L  P  C  W  F  L  P  V  I  H  L  *  L  D  C  H  F  Q  I  L  N  Q  L  K  C  I  C  L  L  L  C  V  H  W  P  S  S  H  W  H  S  K  I  G  A  F  Q  S  R  I  P  S  T  V  R  H  K  A  T </second_frame>
            <third_frame>   F  S  F  Y  F  L :   *  K  K  I  L  *  Q  L  I  Q  S  W  S  C  S  A  R  A  T  F  A  S  N  L  E  T  R  V  H  N  Q  L  Y  R  S  N  Y  N  N  N  N  N  I  L  H  V  I  H  K  W  V  R  G  E  *  T  V  C  K  P  Y  F  Y  L  L  E  V  E  R  L  F  L  I  D  P  R  F  K  E  K  H  I  K  A  A  N  H  G  V  F  S  M  I  L  W  M  K  L  P  I  E  V  *  E  E  P  P  S  V  V  A  A  L  L  F  S  F  I  S  F  T  F  I  R  I  L  F  S  G  S  I  S  S  L  I  A  F  S  I  S  S  A  F  T  I  T  F  W  P  I  F  P  V  G  S  F  L  *  S  I  F  S  S  T  A  I  S  K  S  L  T  N  *  N  A  F  A  C  C  S  A  Y  I  G  Q  V  A  I  G  T  P  K  *  V  L  S  K  V  E  F  H  P  Q  C  D  T  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109645" stop="109872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWSILHDTLDETSNRSVRRASFRGCCSALLFHLLHFHPNFIFRVHKFSYCFLNLLCFHYNFLAHLPCWFLPVIHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="110013" PGL_stop="109383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110013" e_stop="109383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110013" e_stop="109383" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110013" stop="109475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110013" stop="109475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109965" stop="109383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109883" stop="109383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGCTTTGTGTCGCACTGTGGATGGAATTCGACTTTGGAAAGCACCTATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</gDNA_template>
            <first_frame> G  G  F  V  S  H  C  G  W  N  S  T  L  E  S  T  Y  F  G  V  P  M  A  T  W  P  M  Y  A  E  Q  Q  A  N  A  F  Q  L  V  K  D  L  E  M  A  V  E  L  K  M  D  Y  R  K  E  P  T  G  K  M  G  Q  K  V  I  V  K  A  E  E  I  E  K  A  I  R  E  L  M  D  P  E  N  K  I  R  M  K  V  K  E  M  K  E  K  S  R  A  A  T  T  E  G  G  S  S  Y  T  S  I  G  S  F  I  Q  S  I  M  E  N  T  P  *  L  A  A  L  I  C  F  S  L  N  L  G  S  I  R  N  N  L  S  T  S  R  R  *  K  *  G  L  H  T  V  Y  S  P  L  T  H  L  W  I  T  W  S  M  L  L  L  L  L  *  F  D  R  Y  S  W  L  C  T  L  V  S  K  L  L  A  K  V  A  R  A  E  H  D  Q  D  C  I  S  C  Y  N  I  F  F  *  L  </first_frame>
            <second_frame>  V  A  L  C  R  T  V  D  G  I  R  L  W  K  A  P  I  L  E  C  Q  W  L  L  G  Q  C  T  Q  S  S  K  Q  M  H  F  S  W  L  R  I  W  K  W  Q  S  S  *  R  W  I  T  G  R  N  Q  Q  G  R  W  A  K  K  L  *  *  K  Q  R  R  L  R  K  Q  *  E  N  L  W  T  L  K  I  K  F  G  *  K  *  R  R  *  K  R  R  A  E  Q  Q  P  R  K  E  A  L  L  T  L  L  L  E  V  S  S  R  V  S  W  R  I  L  H  D  *  L  L  *  Y  V  F  P  *  T  *  G  L  S  E  T  T  S  L  P  L  E  G  R  S  K  V  C  I  Q  F  T  L  P  *  P  T  C  G  L  R  G  V  C  C  C  C  C  C  N  L  I  D  I  V  G  Y  V  P  S  F  L  S  Y  *  Q  R  L  P  V  L  S  T  T  K  I  V  L  V  V  I  I  S  F  F  S  * </second_frame>
            <third_frame>   W  L  C  V  A  L  W  M  E  F  D  F  G  K  H  L  F  W  S  A  N  G  Y  L  A  N  V  R  R  A  A  S  K  C  I  S  V  G  *  G  F  G  N  G  S  R  A  K  D  G  L  Q  E  G  T  N  R  E  D  G  P  K  S  Y  S  E  S  R  G  D  *  E  S  N  K  R  T  Y  G  P  *  K  *  N  S  D  E  S  E  G  D  E  R  E  E  Q  S  S  N  H  G  R  R  L  F  L  H  F  Y  W  K  F  H  P  E  Y  H  G  E  Y  S  M  I  S  C  F  D  M  F  F  L  E  P  R  V  Y  Q  K  Q  P  L  Y  L  *  K  V  E  V  R  F  A  Y  S  L  L  S  P  D  P  L  V  D  Y  V  E  Y  V  V  V  V  V  V  I  *  S  I  *  L  V  M  Y  P  R  F  *  V  T  S  K  G  C  P  C  *  A  R  P  R  L  Y  *  L  L  *  Y  L  F  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110013" stop="109645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGFVSHCGWNSTLESTYFGVPMATWPMYAEQQANAFQLVKDLEMAVELKMDYRKEPTGKMGQKVIVKAEEIEKAIRELMDPENKIRMKVKEMKEKSRAATTEGGSSYTSIGSFIQSIMENTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="112322" PGL_stop="110629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112322" e_stop="111904"/>
            <exon e_start="111245" e_stop="110629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112322" e_stop="111904" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="111903" i_stop="111246" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111245" e_stop="110629" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111904"/>
              <exon start="111245" stop="111091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="111904"/>
              <exon start="111245" stop="111007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="111904"/>
              <exon start="111245" stop="111011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="111904"/>
              <exon start="111245" stop="111070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="111904"/>
              <exon start="111245" stop="111165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="111904"/>
              <exon start="111245" stop="111210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112313" stop="111904"/>
              <exon start="111245" stop="111033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112311" stop="111904"/>
              <exon start="111245" stop="111008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112303" stop="111904"/>
              <exon start="111245" stop="111019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112237" stop="111904"/>
              <exon start="111245" stop="111048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112142" stop="111904"/>
              <exon start="111245" stop="110761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111236" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111228" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111127" stop="110629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110994" stop="110770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG : GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCTCGAGAATAGTGGGTGTCGGTTTTTGTGGACATTGAGACAACCACCACAGAAAGATGCAACA</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R :   Y  R  H  R  L  I  L  H  L  H  D  R  G  G  Q  *  I  R  A  T  S  L  C  F  L  H  L  W  S  S  S  S  W  T  S  V  P  Y  T  E  P  Y  *  *  L  W  K  R  Y  Y  *  L  Q  R  *  T  *  S  R  T  F  Y  T  N  I  F  Q  S  I  S  C  K  M  F  A  L  C  R  V  R  Q  G  R  R  F  R  H  V  S  *  P  Y  K  K  V  *  R  N  Q  R  Y  N  D  *  Y  L  S  *  T  G  F  S  R  D  K  L  P  L  T  R  Q  E  Y  T  T  G  L  P  C  G  T  C  I  E  P  *  *  C  S  R  *  Q  L  E  F  I  R  P  E  Y  D  E  M  V  R  *  S  T  H  F  I  C  S  V  P  L  F  W  *  R  R  K  F  Y  D  R  A  S  *  G  N  I  I  C  S  R  E  *  W  V  S  V  F  V  D  I  E  T  T  T  T  E  R  C  N  </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A   : G  I  V  I  D  L  F  C  T  S  M  I  E  V  A  N  E  F  E  L  P  A  Y  V  F  Y  T  C  G  A  A  P  L  G  L  Q  F  H  I  Q  S  L  T  D  D  F  G  R  D  I  T  N  Y  K  D  E  P  E  A  E  L  S  I  P  T  Y  F  N  P  F  P  A  K  C  L  P  S  V  A  L  D  K  E  G  G  S  A  M  F  L  D  L  T  R  R  F  R  E  T  K  G  I  M  I  N  T  F  L  E  L  D  S  H  A  I  N  F  L  S  Q  D  K  N  I  P  P  V  Y  P  V  G  P  V  L  N  L  N  N  V  Q  G  D  N  L  S  L  S  D  Q  N  M  M  K  W  L  D  D  Q  P  T  S  S  V  V  F  L  C  F  G  S  G  G  S  F  T  I  E  Q  V  K  E  I  S  Y  A  L  E  N  S  G  C  R  F  L  W  T  L  R  Q  P  P  Q  K  D  A  T </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  :  V  S  S  S  T  Y  F  A  P  P  *  *  R  W  P  M  N  S  S  Y  Q  P  M  F  S  T  P  V  E  Q  L  L  L  D  F  S  S  I  Y  R  A  L  L  M  T  L  E  E  I  L  L  I  T  K  M  N  L  K  Q  N  F  L  Y  Q  H  I  S  I  H  F  L  Q  N  V  C  P  L  S  R  *  T  R  K  E  V  P  P  C  F  L  T  L  Q  E  G  L  E  K  P  K  V  *  *  L  I  P  F  L  N  W  I  L  T  R  *  T  S  S  H  K  T  R  I  Y  H  R  F  T  L  W  D  L  Y  *  T  L  I  M  F  K  V  T  T  *  V  Y  Q  T  R  I  *  *  N  G  *  M  I  N  P  L  H  L  *  C  S  S  V  L  V  A  E  E  V  L  R  *  S  K  L  R  K  Y  H  M  L  S  R  I  V  G  V  G  F  C  G  H  *  D  N  H  H  R  K  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112297" stop="111904"/>
                    <exon start="111245" stop="110629"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGIVIDLFCTSMIEVANEFELPAYVFYTCGAAPLGLQFHIQSLTDDFGRDITNYKDEPEAELSIPTYFNPFPAKCLPSVALDKEGGSAMFLDLTRRFRETKGIMINTFLELDSHAINFLSQDKNIPPVYPVGPVLNLNNVQGDNLSLSDQNMMKWLDDQPTSSVVFLCFGSGGSFTIEQVKEISYALENSGCRFLWTLRQPPQKDAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112322" e_stop="111363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112322" e_stop="111363" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112322" stop="111959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112019" stop="111363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R  Y  V  F  Q  I  N  F  M  C  P  R  L  *  Y  S  N  K  V  C  C  L  D  S  L  K  M  L  M  D  M  C  V  G  Y  C  K  S  S  V  H  N  F  G  E  I  E  H  T  T  C  D  L  *  I  R  C  M  S  S  L  S  *  I  W  L  L  L  Q  K  Q  K  D  W  Y  F  L  P  S  Q  L  Y  D  T  F  K  H  F  E  R  Q  I  V  F  L  K  A  *  Y  A  F  S  S  I  K  N  Y  *  L  L  *  L  I  V  C  F  K  Y  K  F  Y  L  Q  K  L  K  D  Y  M  P  E  F  M  V  K  I  *  K  F  G  S  R  N  P  N  D  V  A  *  P  G  E  Y  F  K  L  K  G  V  L  H  Y  Y  T  N  L  L  N  L  T  R  L  E  N  V  F  Q  *  L  Y  C </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A  G  M  Y  F  K  L  T  L  C  V  Q  G  F  D  T  V  T  R  Y  V  A  W  T  L  *  K  C  *  W  I  C  V  S  D  T  A  K  V  V  Y  I  I  L  E  R  L  N  I  Q  L  V  I  Y  R  L  D  A  C  H  H  C  H  E  F  G  C  Y  Y  K  N  K  K  I  G  T  S  F  P  P  N  F  M  I  L  L  S  I  S  R  D  K  *  F  F  S  K  H  D  M  P  F  Q  V  L  K  I  I  N  Y  C  D  L  *  Y  V  S  N  I  N  F  I  Y  K  S  L  K  I  I  C  P  N  S  W  S  K  F  K  S  L  A  L  E  I  Q  M  M  S  H  D  R  G  S  I  L  S  *  K  G  C  C  T  T  T  P  T  F  S  I  *  R  D  *  K  M  Y  F  N  D  F  I   </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  V  C  I  S  N  *  L  Y  V  S  K  A  L  I  Q  *  Q  G  M  L  L  G  L  F  K  N  V  D  G  Y  V  C  R  I  L  Q  K  *  C  T  *  F  W  R  D  *  T  Y  N  L  *  F  I  D  *  M  H  V  I  I  V  M  N  L  A  A  T  T  K  T  K  R  L  V  L  P  S  L  P  T  L  *  Y  F  *  A  F  R  E  T  N  S  F  S  Q  S  M  I  C  L  F  K  Y  *  K  L  L  I  I  V  T  Y  S  M  F  Q  I  *  I  L  F  T  K  A  *  R  L  Y  A  R  I  H  G  Q  N  L  K  V  W  L  S  K  S  K  *  C  R  M  T  G  G  V  F  *  V  E  R  G  V  A  L  L  H  Q  P  S  Q  F  N  A  T  R  K  C  I  S  M  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112297" stop="111830"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGMYFKLTLCVQGFDTVTRYVAWTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 159 chains have been computed
$ 
$ memory statistics:
$ 405096 bytes spliced alignments in total
$ 89 spliced alignments have been stored
$ 4551 bytes was the average size of a spliced alignment
$ 29448 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1472 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 11:26:49
-->
