<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:30:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471602" ref_strand="+" ref_description="SGN-E471602 [cSTB-24-H15]">
      <seq>attcaaacaatttttgttgcaatggctaccaattcatcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcttcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaagtacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="6890" stop="7937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7178" g_stop="7637" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E471602" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7178" e_stop="7637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCATTTTTGTTGTTGCAATGGCTACCAATTCATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATG</genome_strand>
        <mrna_strand>ATTCAAA-CAAT-TT-TTGTTGCAATGGCTACCAATTCATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCTTCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAGTACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412276" ref_strand="+" ref_description="SGN-E412276 [STM-16-C17]">
      <seq>catcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcatcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaaatacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatgcgatttcagctntttgtatgtattctacatttcaacaggttgttggtgaagttgaagacggagttgcacgccaagtgttcgatgaaatgcctgaagtggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="6915" stop="8040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7215" g_stop="7740" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E412276" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7215" e_stop="7740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGAAGTTGAAGACGGAGTCGCACGCCAACTGTTCGATGAAATGCCTGAAGTCGGGGA</genome_strand>
        <mrna_strand>CATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCATCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAATACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTNTTTGTATGTATTCTACATTTCAACAGGTTGTTGGTGAAGTTGAAGACGGAGTTGCACGCCAAGTGTTCGATGAAATGCCTGAAGTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470340" ref_strand="+" ref_description="SGN-E470340 [cSTB-17-J10]">
      <seq>catcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcatcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaaatacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatgcgatttcagctttttgtatgtattctacatttcaacaggttgttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="6915" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7215" g_stop="7686" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E470340" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7215" e_stop="7686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGA</genome_strand>
        <mrna_strand>CATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCATCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAATACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412277" ref_strand="-" ref_description="SGN-E412277 [STM-16-C17]">
      <seq>gaaagagtggaaggaagaggaatggtggtgaggaattgggtgcctcaattggaaatcttgggacataaatctacgggagggttcttgagtcactgtggatggaattcttgtatggagagcgttagcatgggagttccgatagcaacttggccaattcaagtggaccaaccgtataacgctgtttttgtaaccaacgtgctgaagattggaatcccggttaggagttgggctcgtagggatgaattggtaacagcaacaactattgagaaagctgtcaggactttgatgggtacaccggaaggagaagaaattcgacagagggcaatcgagttgagcaataagatcaagaactctgttagtcatggaggacttgcacagaaggaaagggaatctttcatttcttgtattaccaaataaatttcactcaatgaacatcaacattttgtgtcaagtatgtcatgaataactttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="7868" stop="8944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8168" g_stop="8644" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="490"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E412277" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412277" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8168" e_stop="8644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTGGGAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAACTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCTATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGGATCCCGGTTAGGAGTTGGTCTCGTAGGGAAGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTTAGGACTTTGATGGGTTCACCGGAAGGGGAAGAAATTCGACAGAGGGCAATCGGGTTGAGCAATAAGATCAAGAACTCTATTAGTCATGGAGGACTTGCACATAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTATCAAGTATGTCATGAATAACTATTTTTCAA</genome_strand>
        <mrna_strand>GAAAGAGTGGAAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAATTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCGATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGAATCCCGGTTAGGAGTTGGGCTCGTAGGGATGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTCAGGACTTTGATGGGTACACCGGAAGGAGAAGAAATTCGACAGAGGGCAATCGAGTTGAGCAATAAGATCAAGAACTCTGTTAGTCATGGAGGACTTGCACAGAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTGTCAAGTATGTCATGAATAACTTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414733" ref_strand="-" ref_description="SGN-E414733 [STM-20-E9]">
      <seq>gaagggtttgaagagagagtggaaggaagaggaataatggttaattgggcaccacagttggaaatcttggggcattcatctacgggtgggtttatgagtcactgtggatggaattcttgtatcgagagcattagcatgggagtacctatagcaacatggccaatcagttttgatcagccatttaacgctatacttgtaaccaatttgttgaagattggaatccctgtcaagagtaggtctcaccgggatgaattgataaaagcatcacccattgagaaatctgtcaagacattgatgagtaccatagaaggggaagaaatgaggcaaagggcagtggaattaagcaaaaagatcaaaaactctgttagccgcggaggacttgcacgcaaggcaatggaatctttcatatcacatattattgaataacttccccattgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaatttgaattttagttaagttgtttgagttgttgaatttcaaattatgcaggtatttatgctggctatttaaagctcttcaatgcttaataaaattattgggggtcatttcaaaaaaaaaaaaaaaaatgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="12748" stop="11605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12449" g_stop="11883" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11882" i_stop="11613" i_length="270">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.641" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11612" g_stop="11605" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="570" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="618"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E414733" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12449" e_stop="11883"/>
          <exon e_start="11612" e_stop="11605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTTTTTTTGATGCTTGTCTTTTAAAAAACCAACATTATTATTAGGTAGATTGGACATATCCCTTGTACTAAATGATCTCCTCTTGCTTTGATTGCTGATAGAGACTGATGGAGATAGTCTATCGGAAACGGACTCTTACTAGGACTGAGTACGCTTTACCCTCCGCAGACCTCACTTGTGGGATTACAGTGGATATGTTGTTGTTGTTATGTTGCTTAGACTCTTCA</genome_strand>
        <mrna_strand>GAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCACCACAGTTGGAAATCTTGGGGCATTCATCTACGGGTGGGTTTATGAGTCACTGTGGATGGAATTCTTGTATCGAGAGCATTAGCATGGGAGTACCTATAGCAACATGGCCAATCAGTTTTGATCAGCCATTTAACGCTATACTTGTAACCAATTTGTTGAAGATTGGAATCCCTGTCAAGAGTAGGTCTCACCGGGATGAATTGATAAAAGCATCACCCATTGAGAAATCTGTCAAGACATTGATGAGTACCATAGAAGGGGAAGAAATGAGGCAAAGGGCAGTGGAATTAAGCAAAAAGATCAAAAACTCTGTTAGCCGCGGAGGACTTGCACGCAAGGCAATGGAATCTTTCATATCACATATTATTGAATAACTTCCCCATTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAATTTGAATTTTAGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTATGCAG---GT-A-TTTATGCTGGCTATTTAAA..............................................................................................................................................................................................................................................................................GCTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745173" ref_strand="+" ref_description="SGN-E745173 [GI|47105955]">
      <seq>ggtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataatataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccgtttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggctagctcagtgatattcgtgtcatttggatcaacgactacattatcacaagagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaacctctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13725" stop="11540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13426" g_stop="11829" g_length="1598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1598" r_length="1598" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E745173" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13426" e_stop="11829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTT</genome_strand>
        <mrna_strand>GGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAATATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCGTTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCTAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAAGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAACCTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733928" ref_strand="+" ref_description="SGN-E733928 [LB11BC10]">
      <seq>gtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="12844" stop="11560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12544" g_stop="11847" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E733928" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12544" e_stop="11847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTC</genome_strand>
        <mrna_strand>GTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371337" ref_strand="+" ref_description="SGN-E371337 [TUS-27-C17](-)">
      <seq>gggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="12846" stop="11540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12546" g_stop="11851" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="722"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E371337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12546" e_stop="11851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCC</genome_strand>
        <mrna_strand>GGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265360" ref_strand="+" ref_description="SGN-E265360 [cLEI-9-P10]">
      <seq>gatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattactaacgaatatgttgaagattggaatcgctgtcaagagttgggctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="12909" stop="11735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12609" g_stop="12035" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E265360" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12609" e_stop="12035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATA</genome_strand>
        <mrna_strand>GATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTACTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGGCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371338" ref_strand="+" ref_description="SGN-E371338 [TUS-27-C17]">
      <seq>tcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13295" stop="11837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12995" g_stop="12758" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12757" i_stop="12641" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12640" g_stop="12137" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="742" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E371338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12995" e_stop="12758"/>
          <exon e_start="12640" e_stop="12137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGG</genome_strand>
        <mrna_strand>TCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269076" ref_strand="+" ref_description="SGN-E269076 [cLEI-16-H12]">
      <seq>tccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13241" stop="12020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12941" g_stop="12758" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12757" i_stop="12641" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12640" g_stop="12320" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="505" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E269076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12941" e_stop="12758"/>
          <exon e_start="12640" e_stop="12320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCA</genome_strand>
        <mrna_strand>TCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272388" ref_strand="+" ref_description="SGN-E272388 [cLEM-19-E4]">
      <seq>ggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgggatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13062" stop="12022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12762" g_stop="12322" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E272388" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12762" e_stop="12322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAG</genome_strand>
        <mrna_strand>GGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGGGATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290198" ref_strand="+" ref_description="SGN-E290198 [cLET-5-C2]">
      <seq>tgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="12988" stop="12057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12688" g_stop="12357" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E290198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12688" e_stop="12357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTT</genome_strand>
        <mrna_strand>TGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701165" ref_strand="+" ref_description="SGN-E701165 [FA15AH01]">
      <seq>gtcgttatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13655" stop="12146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13355" g_stop="12446" g_length="910"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="910" r_length="910" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E701165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13355" e_stop="12446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAG</genome_strand>
        <mrna_strand>GTCGTTATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220780" ref_strand="+" ref_description="SGN-E220780 [cLEL-22-I8](-)">
      <seq>caaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtccatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtnctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13236" stop="12193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12936" g_stop="12758" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12757" i_stop="12641" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12640" g_stop="12484" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="337" r_length="158" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E220780" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12936" e_stop="12758"/>
          <exon e_start="12640" e_stop="12484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGT-CATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAA</genome_strand>
        <mrna_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTNCTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221166" ref_strand="+" ref_description="SGN-E221166 [cLEL-22-I8](-)">
      <seq>caaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaaaaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13236" stop="12193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12936" g_stop="12758" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12757" i_stop="12641" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12640" g_stop="12484" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="336" r_length="157" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E221166" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12936" e_stop="12758"/>
          <exon e_start="12640" e_stop="12484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAA</genome_strand>
        <mrna_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAAAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTCCTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266253" ref_strand="+" ref_description="SGN-E266253 [cLEI-3-D3]">
      <seq>gaacaaattttggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13322" stop="12224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13022" g_stop="12524" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E266253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13022" e_stop="12524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACA</genome_strand>
        <mrna_strand>GAACAAATTTTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267739" ref_strand="+" ref_description="SGN-E267739 [cLEI-12-H1]">
      <seq>aaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcacatcaatgagatagctctgggtttagaacagagtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13359" stop="12226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13059" g_stop="12526" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E267739" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13059" e_stop="12526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCA</genome_strand>
        <mrna_strand>AAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCACATCAATGAGATAGCTCTGGGTTTAGAACAGAGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727957" ref_strand="+" ref_description="SGN-E727957 [LA16BA08]">
      <seq>gttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttgggatcacgactacnttatcacaggagcaaatcaatgagattgctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13701" stop="12245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13401" g_stop="12545" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E727957" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13401" e_stop="12545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGG</genome_strand>
        <mrna_strand>GTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGGATCACGACTACNTTATCACAGGAGCAAATCAATGAGATTGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238271" ref_strand="+" ref_description="SGN-E238271 [cLED-22-J4]">
      <seq>gatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13442" stop="12325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13142" g_stop="12625" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E238271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13142" e_stop="12625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCA</genome_strand>
        <mrna_strand>GATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687897" ref_strand="+" ref_description="SGN-E687897 [T3_tus_81_I19]">
      <seq>taaaaaatggtccaatattatatttgtttttttctacattatctttggtatttattagtatgttgcatccctgtttgtattgtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcanacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaaatcaactctaacatcactccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13806" stop="12358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13506" g_stop="12658" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E687897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13506" e_stop="12658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCG</genome_strand>
        <mrna_strand>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCANACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAAATCAACTCTAACATCACTCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268324" ref_strand="+" ref_description="SGN-E268324 [cLEI-13-C21]">
      <seq>ttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagggaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13552" stop="12367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13252" g_stop="12667" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E268324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13252" e_stop="12667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACAT</genome_strand>
        <mrna_strand>TTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGGAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265366" ref_strand="+" ref_description="SGN-E265366 [cLEI-9-A21]">
      <seq>gaatgtcaaaagttacatggggcatacaggatcgacttttagcaccccttcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggataaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgctaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13271" stop="12368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12993" g_stop="12668" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E265366" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12993" e_stop="12668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACA</genome_strand>
        <mrna_strand>GAATGTCAAAAGTTACATGGGGCATACAGGATCGACTTTTAGCACCCCTTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGATAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCTAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597180" ref_strand="+" ref_description="SGN-E597180 [40679]">
      <seq>tgtatgtccagaactcatttttctcagagttctttctccttttgttgctatggctgctaccaatgaagtgattgtagccatgngtaccattttttgattacagccatctcaataacctcattgatcttgctcgtttcatcgcgtcccataatataccagtacacttcctctcctttgttgatatgaaccgagatttggaacttcgtctccaaggtagtctcggggcctcaaacatccatttcgaaaaccttttgagaccttcttctccaacagaaaaagatgttcgcgatggagagcctccgattctaatgtttctggaaaaactaacgaagcccattaatgaaatatgtgttcaactctcaactaaggcaaaaaaattagtcataattcatgaccttataatgagtgaacaagtaatggatctaaatacattgttgaatgtcaagtcttatatgttccacaccggatcgacttttacagatattcttccctcaaacaaactattcctgacataattgatgatgacgatgatcatgtcaaattgatcaagcaaatgcaggatgagtttccgttgttggagccacatgagaaatattgttttcaaatggagcttgattatccggatatccattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgccaaagcaaaaagcaagccgttatgggcttttggtccatttcatatgtttgtagaatcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13731" stop="12373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13431" g_stop="12673" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E597180" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13431" e_stop="12673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATG-GTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTC</genome_strand>
        <mrna_strand>TGTA-TGTCCAGAACTCA-TTTTTCTCAGAGTTCTTTCTCC-TTTTGTTGCTATGGCTGCTACCAATGAAGTGATTGTAGCCATGNGTACCATTTTTTGATTACAGCCATCTCAATAACCTCATTGATCTTGCTCGTTTCATCGCGTCCCATAATATACCAGTACACTTCCTCTCCTTTGTTGATATGAACCGAGATTTGGAACTTCGTCTCCAAGGTAGTCTCGGGGCCTCAAACATCCATTTCGAAAACCTTTTGAGACCTTCTTCTCCAACAGAAAAAGATGTTCGCGATGGAGAGCCTCCGATTCTAATGTTTCTGGAAAAACTAACGAAGCCCATTAATGAAATATGTGTTCAACTCTCAACTAAGGCAAAAAAATTAGTCATAATTCATGACCTTATAATGAGTGAACAAGTAATGGATCTAAATACATTGTTGAATGTCAAGTCTTATATGTTCCACACCGGATCGACTTTTA-CAGATATTCTTCCCTCAAACAAACTATTCCTGACATAATTGATGATGACGATGATCATGTCAAATTGATCAAGCAAATGCAGGATGAGTTTCCGTTGTTGGAGCCACATGAGAAATATTGTTTTCAAATGGAGCTTGATTATCCGGATATCCATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCCAAAGCAAAAAGCAAGCCGTTATGGGCTTTTGGTCCATTTCATATGTTTGTAGAATCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267212" ref_strand="+" ref_description="SGN-E267212 [cLEI-4-M6]">
      <seq>catctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13563" stop="12462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13263" g_stop="12762" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E267212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13263" e_stop="12762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATG</genome_strand>
        <mrna_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266911" ref_strand="+" ref_description="SGN-E266911 [cLEI-7-A12]">
      <seq>tctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13601" stop="12473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13301" g_stop="12773" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E266911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13301" e_stop="12773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGT</genome_strand>
        <mrna_strand>TCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711034" ref_strand="+" ref_description="SGN-E711034 [FA57DA05]">
      <seq>tatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttccccccccccccccccccaaaaaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13680" stop="12482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13380" g_stop="12782" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E711034" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13380" e_stop="12782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCA</genome_strand>
        <mrna_strand>TATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTCCCCCCCCCCCCCCCCCCAAAAAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329693" ref_strand="+" ref_description="SGN-E329693 [cTOD-3-D24]">
      <seq>gttttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13713" stop="12484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13414" g_stop="12784" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E329693" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13414" e_stop="12784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAAT</genome_strand>
        <mrna_strand>GTTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272674" ref_strand="+" ref_description="SGN-E272674 [cLEM-21-I3]">
      <seq>accaatgaagtcattgtggccatggtaccattttatgattacagccatctcaatggcctgttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13670" stop="12495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13370" g_stop="12795" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E272674" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13370" e_stop="12795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTAC</genome_strand>
        <mrna_strand>ACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATGGCCTGTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327798" ref_strand="+" ref_description="SGN-E327798 [cTOC-20-N3]">
      <seq>aaaaaatggtccaatattatatttgtttttttctacattatctttggtatttattagtatgttgcatccctgtttgtattgtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13805" stop="12512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13505" g_stop="12812" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E327798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13505" e_stop="12812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATG</genome_strand>
        <mrna_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284246" ref_strand="+" ref_description="SGN-E284246 [cLER-16-O8]">
      <seq>acagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13630" stop="12542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13330" g_stop="12842" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E284246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13330" e_stop="12842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATG</genome_strand>
        <mrna_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329823" ref_strand="+" ref_description="SGN-E329823 [cTOD-3-F7]">
      <seq>tttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcangatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13712" stop="12564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13412" g_stop="12864" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E329823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13412" e_stop="12864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAG</genome_strand>
        <mrna_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCANGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265374" ref_strand="+" ref_description="SGN-E265374 [cLEI-9-G1]">
      <seq>gtcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatggacctataaggagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13706" stop="12564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13407" g_stop="12864" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E265374" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13407" e_stop="12864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAG</genome_strand>
        <mrna_strand>GTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGGACCTATAAGGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAAGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266751" ref_strand="+" ref_description="SGN-E266751 [cLEI-7-M17]">
      <seq>catctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13563" stop="12574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13263" g_stop="12874" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E266751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13263" e_stop="12874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAAT</genome_strand>
        <mrna_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266374" ref_strand="+" ref_description="SGN-E266374 [cLEI-3-A16]">
      <seq>caaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13705" stop="12583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13405" g_stop="12883" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E266374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13405" e_stop="12883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTAT</genome_strand>
        <mrna_strand>CAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329385" ref_strand="+" ref_description="SGN-E329385 [cTOD-2-O18]">
      <seq>tttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13712" stop="12591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13412" g_stop="12891" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E329385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13412" e_stop="12891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTC</genome_strand>
        <mrna_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284410" ref_strand="+" ref_description="SGN-E284410 [cLER-16-O10]">
      <seq>acagccatctcaataacctcttagatctctctcgtttcatcgcgtaccataacataccagtacacttcatctcatttgtgtgatatgaaccgagatttgaaacttcgtctcaaaggtagtaccggggcctcaaacatacatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgtgcaactctctacaaaagcaaaaaagttagtcattgtgcatgaccttataatgagtgaacaaatattggaagtgaatacattggcgaatgtgaaaagttacatgttccatacaggatcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="13630" stop="12656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13330" g_stop="12956" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E284410" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13330" e_stop="12956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGT-TGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTT</genome_strand>
        <mrna_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTACCATAACATACCAGTACACTTCATCTCATTTGTGTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTACCGGGGCCTCAAACATACATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTGCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTGCATGACCTTATAATGAGTGAACAAATATTGGAAGTGAATACATTGGCGAATGTGAAAAGTTACATGTTCCATACAGGATCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740498" ref_strand="+" ref_description="SGN-E740498 [LC21CG03]">
      <seq>gtctaaggacaacttcattctcttcttcctggctatgttcaccttgcaaagagaacaaatattttcagtagtagagattgaactgcactcatgcctctcgcgcatcaagttgaccgttccgccttacgtaagcaatgccattcagccattaacttcttctttacattcattgtgtttgtaccaaatgcaggccattgtagagttcagaatcagtgattcaagtgtgaaagtctcggcaggtgtttcctggtatgcctcacaaatctacttgttttgaacaatgaacaatatgtttcattttgtgtcttacgtgtattatgtcatataggatacgcgtgtctatttgttcaattttaaacaagtttaactgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="15285" stop="16262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15585" g_stop="15958" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="405"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E740498" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15585" e_stop="15958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTA</genome_strand>
        <mrna_strand>GTCTAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537747" ref_strand="+" ref_description="SGN-E537747 [TUS-56-I5](-)">
      <seq>ttagaacagagcacccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttaaagataaagtcgtaaagattgaattacccgaagggtttgaagtaagagtggaaggaagaggaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtatcgagagcattaacatgggagtacctatagctactaggccaatcagtttcgatcagccatttaacgctatacttgtaactaatttgttggagattggaatcactgtcaagtgttggtctcaccgcgatgaattggtaaaagcatcaaccatagagaaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaatctattgagagacattttcaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17485" stop="16186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17185" g_stop="16487" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E537747" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17185" e_stop="16487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</genome_strand>
        <mrna_strand>TTAGAACAGAGCACCCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541505" ref_strand="+" ref_description="SGN-E541505 [TUS-62-F9](-)">
      <seq>gaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17115" stop="16207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16816" g_stop="16508" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="322"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E541505" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16816" e_stop="16508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>GAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541508" ref_strand="+" ref_description="SGN-E541508 [TUS-62-F9]">
      <seq>gaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17115" stop="16207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16816" g_stop="16508" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="322"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E541508" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16816" e_stop="16508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>GAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297867" ref_strand="+" ref_description="SGN-E297867 [cLET-38-N22]">
      <seq>aatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggccatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcacattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17115" stop="16207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16815" g_stop="16508" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="321"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E297867" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16815" e_stop="16508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>AATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCCATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCACATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401310" ref_strand="+" ref_description="SGN-E401310 [PPC-3-B24]">
      <seq>tagaatcacactctaattcgtctagcaacatcactcgtcatgatcaatgcctagaatttctcgacaaacaagatgttaactcagtgatattcatctcgtttggatcaaccactacattatcacaaaagcaagtcaatgagattgctctgggtttagaacagagcaaccatagatttatttgggtactaagaaaaggagataatgcagagaaacttanagaaaaagacgtaaagattgaattacccgaagggtttgaagagagagtggaaggaagaggaataatggttaattgggcaccacagttggaaatcttggggcattcatctacgggtgggtttatgagtcactgtggatggaattcttgtatcgagagcattagcatgggagtacctatagcaacatggccaatcagttttgatcagccatttaacgctatacttgtaaccaatttgttgaagattggaatccctcgtcagagtaggtctcaccgggatgaattgataaaagcatcaaccattgagaaatctgtcaagacattgatgagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17616" stop="16491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17317" g_stop="16791" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="547" r_length="522" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E401310" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17317" e_stop="16791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTAC</genome_strand>
        <mrna_strand>CAACATCACTC---GTCATGATCAATGCCTAGAATTTCTCG-A-CAAACAAGATGTTAACTCAGTGATATTCATCTCGTTTGGATCAACCACTACATTATCACAAAAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCATAGATTTATTTGGGTACTAAGAAAAGGAGATAATGCAGAGAAACTTANAGAAAAAGACGTAAAGATTGAATTACCCGAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCACCACAGTTGGAAATCTTGGGGCATTCATCTACGGGTGGGTTTATGAGTCACTGTGGATGGAATTCTTGTATCGAGAGCATTAGCATGGGAGTACCTATAGCAACATGGCCAATCAGTTTTGATCAGCCATTTAACGCTATACTTGTAACCAATTTGTTGAAGATTGGAATCCCTCGTCAGAGTAGGTCTCACCGGGATGAATTGATAAAAGCATCAACCATTGAGAAATCTGTCAAGACATTGATGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537750" ref_strand="+" ref_description="SGN-E537750 [TUS-56-I5]">
      <seq>ctgttttgctaatgttaacgaatatttgaaacttcgcgttcaaggtgatgtaagagcttcaaacatctatttcgataacctgttgagaccttcatctccaacgcaaaaaaatgatcgcgatcaagcaacatcactctgcgttatgatcaatgcctagaatttctcgaatcaaacaagatgttaactcggtgatactcatctcatctggatcaacgactacgttatcacaagagcaagtcaatgagattgctctgggtttagaacagagcaaccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttaaagataaagtcgtaaagattgaattacccgaagggtttgaagtaagagtggaaggaagaggaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtatcgagagcattaacatgggagtacctatagctactaggccaatcagtttcgatcagccatttaacgctatacttgtaactaatttgttggagattggaatcactgtcaagtgttggtctcaccgcgatgaattggtaaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17742" stop="16527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17442" g_stop="16827" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E537750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17442" e_stop="16827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATC</genome_strand>
        <mrna_strand>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266823" ref_strand="+" ref_description="SGN-E266823 [cLEI-7-H23]">
      <seq>tgttttgctaatgttaacgaatatttgaaacttcgcgttcaaggtgatgtaagagcttgaaacatctatttcgataacctgttgagaccttcatctccaacgcaaaaaaatgatcgcgatcaagcaacatcactctgcgttgtgatcaatgcctagaatttctcgaatcaaacaagatgttaactcggcgatactcatctcatctggatcaacgactacgttatcacaagagcatgtcaatgagattgctctgggtttagaacagagcaaccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttacagataaagtcgtacagattgaattacccgaacggtttgaagtaagagtggaaggaagatgaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtctcgagagcattgacatgggagtacctatagctactatgccaatcaatttcgatcagccatttaacgctatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="17741" stop="16599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17441" g_stop="16899" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E266823" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17441" e_stop="16899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACT</genome_strand>
        <mrna_strand>TGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTGAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTGTGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGCGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCATGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTACAGATAAAGTCGTACAGATTGAATTACCCGAACGGTTTGAAGTAAGAGTGGAAGGAAGATGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTCTCGAGAGCATTGACATGGGAGTACCTATAGCTACTATGCCAATCAATTTCGATCAGCCATTTAACGCTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226335" ref_strand="+" ref_description="SGN-E226335 [cLEL-26-J5](-)">
      <seq>tctttcaaaattttttatatcatttttgataaatttaatgagcacatatgaatttgagtaaaaatctttgttcgaaaattatgataaataaatatttttatacgtaaaagtcatttatcttttttcatgttcttcatacttgttccttgtttttatgagatttgaaataaatcatacgaagacttctttcaaatctgaatctttatatttgattttcatttatcttcatatttggaagataaattttttttgtatataaaaaaagaaaaaaaaagtgttggagctaaaatgaagaaagttttgtaaactaaattatgaagaagaagatagatagagagtggggtgttttcatttttgaaataaatgtaattaaagaagagaatttattttaagttaattataatgccaagtgtcaataaaagaagaaaaaatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="20268" stop="19207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19968" g_stop="19507" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E226335" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19968" e_stop="19507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAAAAATTTTATATCATTTTTGATAAATTTAATTACCACATATGAATTTGAGTAAAAATCTTTGTTCAAAAATTGTGATAAATAATTCTCGGGTAACTATTTTTATACGTAAAAATCATTTATCTTTTTTCATCTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACTAAGACTTTCTTTCAAATCTGAATCTTTATAGTTAATTTTCATTTATCTTCATATTTGGAAAATATAAATTTTTTGTATATAAAAAAGAAAAAAAACTGTGTTAGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGATGATAGATAGGGAGTGAGATGTTTTCTTTTTTGAAAAAAATGTAAATAAAGAAGAAAATATTTTTTAAGTTATTTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAATGAAAAA</genome_strand>
        <mrna_strand>TCTTTCAAAATTTTTTATATCATTTTTGATAAATTTAATGAGCACATATGAATTTGAGTAAAAATCTTTGTTCGAAAATTATGATAAATAA----------A-TATTTTTATACGTAAAAGTCATTTATCTTTTTTCATGTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACGAAGAC-TTCTTTCAAATCTGAATCTTTATATTTGATTTTCATTTATCTTCATATTTGGAAGATAAATTTTTTTTGTATATAAAAAAAGAAAAAAAAAGTGTTGGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGAAGATAGATAGAGAGTGGGGTGTTTTCATTTTTGAAATAAATGTAATTAAAGAAGAGAATTTATTTTAAGTTAATTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450110" ref_strand="+" ref_description="SGN-E450110 [cSTS-8-M8]">
      <seq>ctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatggtttgccttcgattgttatatttataagaaagctcatcgagcccattagaagaacgtgtattgatatctctacctatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtgaagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgatcacttagttgttgatgatgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctattgtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctggatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctcgaatttctagacaagcaagacgttaactcagtaatattcgtctcgtttggaacaaccactacgttaacacaagagcaagtcaatgagctcgcgcttggtttagaacagagcaatcataccttcatttgggtactaagacaaagcagataaaagatggaaaccgaaaaacttgaagagaatgatgagaagattgaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="31390" stop="30026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31090" g_stop="30326" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E450110" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31090" e_stop="30326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTA---GTTG-T--TGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACTTCATTTGGGTACTAAGAC-AAGCAGATAAAAAGATGGAAACTGAAAATTTTGAAGAGAATGATGAGAAGATTGAATTGC</genome_strand>
        <mrna_strand>CTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGGTTTGCCTTCGATTGTTATATTTATAAGAAAGCTCATCGAGCCCATTAGAAGAACGTGTATTGATATCTCTACCTATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGAAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTATTGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGGATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTCGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACGTTAACACAAGAGCAAGTCAATGAGCTCGCGCTTGGTTTAGAACAGAGCAATCATACCTTCATTTGGGTACTAAGACAAAGCAGAT-AAAAGATGGAAACCGAAAAACTTGAAGAGAATGATGAGAAGATTGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456010" ref_strand="+" ref_description="SGN-E456010 [cSTS-28-C12]">
      <seq>gtacacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctgtagtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgaatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctagaatttctagacaagcaagatgttaactcagtaatattcgtctcgtttggaacaaccactacattaacacaagaacaagtcaatgagctcgcgcttggtttagaacataagcatcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="31458" stop="30104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31158" g_stop="30404" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E456010" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31158" e_stop="30404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACT</genome_strand>
        <mrna_strand>GTACACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTGTAGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGAATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTAGAATTTCTAGACAAGCAAGATGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACATTAACACAAGAACAAGTCAATGAGCTCGCGCTTGGTTTAGAACATAAGCATCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571363" ref_strand="+" ref_description="SGN-E571363 [12893]">
      <seq>caatggtttgccttcgattgttatatttataagaaagctcatcgagcccattagaggaacgtgtattgatatctctacctatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtgaagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgatcacttagttgttgatgatgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctattgtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgggatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctcgaatttctagacaagcaagacgttaactcagtaatattcgtctcgtttggaacaaccactacgttaacacaagagcaagtcaatgagctcgcgcttggtttagaacagagcaatcatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="31338" stop="30103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31039" g_stop="30408" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E571363" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31039" e_stop="30408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTA---GTTG-T--TGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGT-GGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGT</genome_strand>
        <mrna_strand>CAATGGTTTGCCTTCGATTGTTATATTTATAAGAAAGCTCATCGAGCCCATTAGAGGAACGTGTATTGATATCTCTACCTATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGAAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTATTGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGGGATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTCGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACGTTAACACAAGAGCAAGTCAATGAGCTCGCGCTTGGTTTAGAACAGAGCAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485388" ref_strand="+" ref_description="SGN-E485388 [cSTE-17-B22]">
      <seq>gttcttctcttctttttttcttccaatgtctacaaactcatcagacaaggttgttcaccttgatgaagtgattgtagccatggtgccatttcctgattttagccatctcaatcagctcttcgttcttgctcgtttcatcgcttcccataatatacaagtacacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctgtagtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgaatttacttgcacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="31611" stop="30313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31315" g_stop="30613" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E485388" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31315" e_stop="30613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCTTCTCTTATTTTCTTCCAATGTCTACAAACTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATAC</genome_strand>
        <mrna_strand>GTTCTTCTCTTCTTTTTTTCTTCCAATGTCTACAAACTCATCAGACAAGGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTTCGTTCTTGCTCGTTTCATCGCTTCCCATAATATACAAGTACACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTGTAGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGAATTTACTTGCACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471055" ref_strand="+" ref_description="SGN-E471055 [cSTB-22-C24]">
      <seq>ctcatcagacaaggttgttcaccttgatgaagtgattgtagccatggtgccatttcctgattttagccatctcaatcagctcttcgttcttgctcgtttcatcgcttcccataatatacaagtaccacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="31579" stop="30471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31279" g_stop="30748" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E471055" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31279" e_stop="30748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTA-CACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTT</genome_strand>
        <mrna_strand>CTCATCAGACAAGGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTTCGTTCTTGCTCGTTTCATCGCTTCCCATAATATACAAGTACCACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575998" ref_strand="+" ref_description="SGN-E575998 [35709]">
      <seq>cgcaccagctgagaaagccttctcatcctagttgtagcattctctctgcaatcaatagtcttgcaactctgttgaaggagcctattgttcgatgttcatttgttcaagctgatggagtgaagctgctcgttcctttaatttcaccagcatctactcaacagtccattcagcttctctacgagacatgtctatgcgtatggcttctgtcttactatgaacctgcaattgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgacaaaggagaaggtagtcagagttgtcatcttgactcttaggaatctgcttgccagagggtcatttggtgctcaaatggtagacctggatgtgctgcaaatcgtacagagtttgaaagcgcaggcttggagtgatgaggaccttttggacactctgaatcaacttgaagggaggattgaaggccaacatcaaaaaattgagttcgtatgataagtacaagcaggaagtcctacttggcagtcttgattggtcccccatgcataaggatcctctattctggaaggaaaatataacttgtttcgagggagaacggatttcaagatcttgagagtgctcatgacgatgttggatacatcaaccggatgcaagggacaacttgcttgtagcttgctatagacttgtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="40388" stop="37005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40085" g_stop="39924" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="170" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39923" i_stop="39369" i_length="555">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39368" g_stop="39243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="296" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39242" i_stop="38966" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38965" g_stop="38840" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="422" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38839" i_stop="38593" i_length="247">
            <donor d_prob="0.397" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38592" g_stop="38413" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="605" r_length="183" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38412" i_stop="37384" i_length="1029">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37383" g_stop="37303" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="691" r_length="86" r_score="0.790"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E575998" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40085" e_stop="39924"/>
          <exon e_start="39368" e_stop="39243"/>
          <exon e_start="38965" e_stop="38840"/>
          <exon e_start="38592" e_stop="38413"/>
          <exon e_start="37383" e_stop="37303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCTTGACTCTTAGGAATTTGCTTGCCAGAGGGTCATTTGGTTCTCAAATGGTAGACCTGGATGTGCTGCAAATTGTACAGAGCTTGAAAGCGCAGGCCTGGAGTGATGAGGTGATTGAATCGAACGGTTTTGTGGTTTTTAATTTGATACAGTATCTTACTTTATTTTCTATTTCTGTATAATAGAAGCAACTTGAAAGAAGTTCCGCCAAAGTTTAAATAATAGACTGTTTAGACAGTACTTAATCATTTTGGTTCTTATAAAGAAACATTTCGAGAAGGTTCAGTTGGCCGAAATGAATTTTTAGATTCACAGATTTATCGACATCACCCTAATTTGCCGTGTAATCTGTTTTAGGACCTTTTGGACGCTCTGAATCAACTTGAA-GGAGGATTGAAGGCCAACATCAAAAAAATGAGTTCGTACGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAAGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGA-GGAGAACGGATTTC-AGGTATTGCCTATGGCATTTCTCATTCTTTCGTATAGCTTAAACACCATAAATTACCATTACTATTGTGCCTTTATGTGAGAAAAACAACAATCTCTGTCAGGTCGCGTAACTGCTCAACAATCTTGCTGGCATTGACTTAATATATATGCTAAATGAAATAAAGAACTCTACACATTTATAACTAGCCGTAGACATCAGTCGTATTAGTCAGTAGAGTGGTGCAATGTTTTTAAAGTGAAAAGCACAAAAAATGACGAGGTCCATATGGATGAAAAGCATTCCTTCTGTGAATAAAAATAGGGAAAAAGGATGAATATACCCCCGAACTATCGTAAATGGTATGCAGATACCCTCCGTCATACTTTTGGGACATTGGTGCCCGTCGTCCAAAAACTAGAGCGTAGATGCCCTTCACTCTAACAGAAGACTAAATAGGGCGCAATCTTATTCATCGATCCGATGTTAGGTCGGTGGATAAGATTATGACACATGTATTTCCGTTAGTATAAAGGGTATATATGCTCTAGTTTTTGGACGGCAGGGGCACCAATGTCCCTAAAGTATGACGGAGGGTATCTGCATATCATTTCTGATAGTTCGGGGATATTTGTCCTTTTTCCCATAAAAATATACTATTTAGGGTAAATTATACACTATCAAACATCTATGATAAAACTAATTTCAACACCAATGTACAATAATGTCGATATTAATCTAACTCATCAAAGTTATTCAAAGAAGTGATTGGTTCTCGTCGTAGTCTCAGCACCATTTTTCAAGGTTTATTATTTTCATCCCTTTCTGCTGTATTGAGTGTACAAGTAAATGGTCAAAAACACACCCGAACTATCACTTTTTTCCGAGTTTCACATCCCAACTAGGTGTGTTTTTATACACAAATGGTGATAGTTCGGGTAGGAAAAGGGAATTTCTGATAGTTCAGGCGTATTTTTGACCATTAACTCATAAATCAGTCCAACGACTATTGTATTGAGTGTATAGATTGATCGACGTTGTGTTGTGCTGCAGATTTTGAGAGTGCTCATGACGATTTTGGATACATCAA-ATGATTCAA-GGAC-ACTTGC-TGTAGCTTGCTAT-GACTTGTCACAG</genome_strand>
        <mrna_strand>CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCTCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTATTGTTCGATGTTCATTTGTTCAAGCTGATGGAGTGAAGCTGCTCGTTCCTTTAATTTCACCAGCATCTACTCAACAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTATGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG.....................................................................................................................................................................................................................................................................................GTAGTCAGAGTTGTCATCTTGACTCTTAGGAATCTGCTTGCCAGAGGGTCATTTGGTGCTCAAATGGTAGACCTGGATGTGCTGCAAATCGTACAGAGTTTGAAAGCGCAGGCTTGGAGTGATGAG.......................................................................................................................................................................................................................................................GACCTTTTGGACACTCTGAATCAACTTGAAGGGAGGATTGAAGGCCAACATCAAAAAATTGAGTTCGTATGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAGGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGAGGGAGAACGGATTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAGAGTGCTCATGACGATGTTGGATACATCAACCGGATGCAAGGGACAACTTGCTTGTAGCTTGCTATAGACTTGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214174" ref_strand="+" ref_description="SGN-E214174 [cLEC-77-G5]">
      <seq>ttattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactcagcagtccattcagcttctctacgagacatgtctatgcgtttggcttctgtcttactatgaacctgcaattgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgancaaggagaaagtagtcagagttgtcatcttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="42263" stop="38641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41963" g_stop="41911" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="119" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="237" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40085" g_stop="39924" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="399" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39923" i_stop="39369" i_length="555">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39368" g_stop="39243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="525" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39242" i_stop="38966" i_length="277">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38965" g_stop="38941" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="550" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E214174" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41963" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
          <exon e_start="40085" e_stop="39924"/>
          <exon e_start="39368" e_stop="39243"/>
          <exon e_start="38965" e_stop="38941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCTTGACTC</genome_strand>
        <mrna_strand>TTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGANCAAGGAGAAA.....................................................................................................................................................................................................................................................................................GTAGTCAGAGTTGTCATCTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595848" ref_strand="-" ref_description="SGN-E595848 [39129]">
      <seq>ctgcaatcaatagtcttgcaactctgttgaaggagcctgttgttcgacgttcatttgttcaagatgatggagtgaagctgctcgttcctttaatttcaccagcatctactcagcagtccattcagcttctctacgagacatgtctatgcgtttggcttttgtcttactatgaacctgcaatcgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgacaaaggagaaggtagtcaagatgacaactctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="40348" stop="38935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40048" g_stop="39924" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39923" i_stop="39369" i_length="555">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39368" g_stop="39243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="251" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39242" i_stop="38966" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38965" g_stop="38947" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="269" r_length="18" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E595848" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595848" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40048" e_stop="39924"/>
          <exon e_start="39368" e_stop="39243"/>
          <exon e_start="38965" e_stop="38947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCT</genome_strand>
        <mrna_strand>CTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAAGATGATGGAGTGAAGCTGCTCGTTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTTTGGCTTTTGTCTTACTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG.....................................................................................................................................................................................................................................................................................GTAGTCA-AGATGACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705540" ref_strand="+" ref_description="SGN-E705540 [FA27BG06]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactccagcagtccattcagcttctctacgagacatgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45556" stop="39047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45256" g_stop="45200" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="541" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="659" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40085" g_stop="39924" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="822" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39923" i_stop="39369" i_length="555">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39368" g_stop="39347" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="844" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E705540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45256" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
          <exon e_start="40085" e_stop="39924"/>
          <exon e_start="39368" e_stop="39347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACT-CAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTAT</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706419" ref_strand="+" ref_description="SGN-E706419 [FA29DF06]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattcccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactcagcagtccattcagcttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45556" stop="39616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45256" g_stop="45200" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="541" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="659" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40085" g_stop="39924" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="822" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E706419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45256" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
          <exon e_start="40085" e_stop="39924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATT-CCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458158" ref_strand="+" ref_description="SGN-E458158 [cPRO-4-J2]">
      <seq>atctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgatggtccagcttatatccatgtttttgttactactttacgagatgtcttcaaggaagaaactgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagccagattattccatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgttgatgcaaatggagatgcctcgagttcaaagaggacactcaccatgatggaaaatgttctgaatggcctagtggattggctatgcgcacagctgagaaagccttctcatcctagttgtagcattctctctgcaatcaatagtcttgcaactctgttgaaggagcctattgttcgatgttcatttgntcaagctgatggagtgaagctgctcgntcctttaatttcacagcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45535" stop="39641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45235" g_stop="45200" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="152" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="278" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="381" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="454" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="520" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="638" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704">
            <donor d_prob="0.946" d_score="0.90"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40085" g_stop="39941" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="782" r_length="144" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E458158" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45235" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
          <exon e_start="40085" e_stop="39941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTA</genome_strand>
        <mrna_strand>ATCTGTGGCACCTCTGTTCATCACCATCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGATGTCTTCAAGGAAGAAACTGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCCAGATTATTCCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGTTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCATGATGGAAAATGTTCTGAATGGCCTAGTGGATTGGCTATGCGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCTCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTATTGTTCGATGTTCATTTGNTCAAGCTGATGGAGTGAAGCTGCTCGNTCCTTTAATTTCA-CAGCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449625" ref_strand="+" ref_description="SGN-E449625 [cSTS-7-E15]">
      <seq>caactcccatctgtggcacctctgttcatcaccaccttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccatgtttttgttactactttacgagacgtcttcaaggaagaaactgtggaatatattttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattatttcatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgttgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatgttctgaatggcctagtggattggctatgcacacagctgagaaagccttctcatnctagttgtagcattccctctgcaatcaatagtcttgcaactctgttgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45543" stop="39715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45243" g_stop="45200" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="160" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="286" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="389" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="462" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="528" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="646" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40085" g_stop="40015" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="717" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E449625" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45243" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
          <exon e_start="40085" e_stop="40015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGA</genome_strand>
        <mrna_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCACCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGACGTCTTCAAGGAAGAAACTGTGGAATATATTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTTCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGTTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATGTTCTGAATGGCCTAGTGGATTGGCTATGCACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATNCTAGTTGTAGCATTCCCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365694" ref_strand="+" ref_description="SGN-E365694 [cLPT-8-M1]">
      <seq>gaggcagatcttcagctgttaaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgtcactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgcgcacagctgagaaagccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="43315" stop="40488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43019" g_stop="42948" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="175" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="248" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="314" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40907" g_stop="40790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="432" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E365694" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43019" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG</genome_strand>
        <mrna_strand>GAGGCAGATCTTCAGCTGTTAAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTCACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325749" ref_strand="+" ref_description="SGN-E325749 [cTOC-15-F14]">
      <seq>tctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45555" stop="40576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45255" g_stop="45200" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="172" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="298" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="401" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="540" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40907" g_stop="40876" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="572" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E325749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45255" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
          <exon e_start="40907" e_stop="40876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATG</genome_strand>
        <mrna_strand>TCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423054" ref_strand="+" ref_description="SGN-E423054 [STM-41-M24]">
      <seq>caactcccatctgtggcacctctgttcatcaccaccttcatattgttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccatgtttttgttactactttacgagacgtcttcaaggaagaaactgtggaatatattttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattatttcatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45543" stop="40716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45243" g_stop="45200" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="0.95"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="160" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="286" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="389" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="462" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41016" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="528" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E423054" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45243" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41911"/>
          <exon e_start="41081" e_stop="41016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG</genome_strand>
        <mrna_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCACCTTCATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGACGTCTTCAAGGAAGAAACTGTGGAATATATTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTTCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319408" ref_strand="+" ref_description="SGN-E319408 [cTOB-15-B21]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="45556" stop="41624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45256" g_stop="45200" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43845" g_stop="43730" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43073" g_stop="42948" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42329" g_stop="42227" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41983" g_stop="41924" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E319408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45256" e_stop="45200"/>
          <exon e_start="43845" e_stop="43730"/>
          <exon e_start="43073" e_stop="42948"/>
          <exon e_start="42329" e_stop="42227"/>
          <exon e_start="41983" e_stop="41924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATG</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321518" ref_strand="+" ref_description="SGN-E321518 [cTOB-23-J12]">
      <seq>agccaaacgcggcactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52643" stop="53897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52943" g_stop="53597" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E321518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52943" e_stop="53597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCG</genome_strand>
        <mrna_strand>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486857" ref_strand="+" ref_description="SGN-E486857 [cSTE-23-O16]">
      <seq>gccaaacacggcacaaagagatactctccaatcttcttcttcttctctctcattgtaaaacagcaaaaatggcggtttctgctcggcgatcaaccggaccggtgctccgttcactgtcccccgccgggagattttactcgtcgacatctagaacttcgtcgtcttcggcttcatcggtccggttcacactggaccgtgagacttccccgagccggtctatttccgtaatgaaccggcagaaaacaatggcttcttctcagaagaagacgtgtatgtgttcgccgacgaatcatccaggttcattccgttgtagtatgcataagaaaatggataatcgacggagtagtaatactagccaaacagcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgaacttgttaaaagagctttagcggctttgattcgtccttcttctcatcaacagcgccgccgttccgatttccaacgccgacctagccggctttccgttatttccagttccggtgattcataagactgttattcgatctctagaaatttctgttgaatgctgacgtcagcattcatcaacgccgccgcgccgatctagccggatttccattatttccggtgccggtgattcgtaagacgtgaatagagctgntagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52644" stop="53980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52944" g_stop="53680" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E486857" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52944" e_stop="53680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTC-ATTCAA--C-AACGCGTGC-TGCGCCGA-TTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGG</genome_strand>
        <mrna_strand>GCCAAACACGGCACAAAGAGATACTCTCCAATCTTCTTCTTCTTCTCTCTC-ATTGTAAAACAGC-AAAAATGGCGGTTTCTGCTCGGCGATCAACCGGACCGGTGCTCCGTTCACTGTCCCCCGCCGGGAGATTTTACTCGTCGACATCTAGAACTTCGTCGTCTTCGGCTTCATCGGTCCGGTTCACACTGGACCGTGAGACTTCCCCGAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACAATGGCTTCTTCTCAGAAGAAGACGTGTATGTGTTCGCCGACGAATCATCCAGGTTCATTCCGTTGTAGTATGCATAAGAAAATGGATAATCGACGGAGTAGTAATACTAGCCAAACAGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAACTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCTCATCAACAGCGCCGCCGTTCCGATTTCCAACGCCGACCTAGCCGGCTTTCCGTTATTTCCAGTTCCGGTGATTCATAAGACTGTTATTCGATCTCTAGAAATTTCTGTTGAATGCTGACGTCAGCATTCATCAACGCCGCCGCGCCGATCTAGCCGGATTTCCATTATTTCCGGTGCCGGTGATTCGTAAGACGTGAATAGAGCTGNTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427418" ref_strand="+" ref_description="SGN-E427418 [STM-48-M20]">
      <seq>gccaaacacggcacaaagagatactctccaatcttcttcttcttctctctcattgtaaaacagcaaaaatggcggtttctgctcggcgatcaaccggaccggtgctccgttcactgtcccccgccgggagattttactcgtcgacatctagaacttcgtcgtcttcggcttcatcggtccggttcacactggaccgtgagacttccccgagccggtctatttccgtaatgaaccggcagaaaacaatggcttcttctcagaagaagacgtgtatgtgttcgccgacgaatcatccaggttcattccgttgtagtatgcataagaaaatggataatcgacggagtagtaatactagccaaacagcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgaacttgttaaaagagctttagcggctttgattcgtccttcttctcatcaacagcgccgccgttccgatttccaacgccgacctagccggctttccgttatttccagttccggtgattcataagactgttattcgatctctagaaatttctgttgaatgctgacgtcagcattcatcaacgccgccgcgccgatctagccggatttccattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52644" stop="53974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52944" g_stop="53535" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E427418" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52944" e_stop="53535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTC</genome_strand>
        <mrna_strand>GCCAAACACGGCACAAAGAGATACTCTCCAATCTTCTTCTTCTTCTCTCTC-ATTGTAAAACAGC-AAAAATGGCGGTTTCTGCTCGGCGATCAACCGGACCGGTGCTCCGTTCACTGTCCCCCGCCGGGAGATTTTACTCGTCGACATCTAGAACTTCGTCGTCTTCGGCTTCATCGGTCCGGTTCACACTGGACCGTGAGACTTCCCCGAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACAATGGCTTCTTCTCAGAAGAAGACGTGTATGTGTTCGCCGACGAATCATCCAGGTTCATTCCGTTGTAGTATGCATAAGAAAATGGATAATCGACGGAGTAGTAATACTAGCCAAACAGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAACTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCTCATCAACAGCGCCGCCGTTCCGATTTCCAACGCCGACCTAGCCGGCTTTCCGTTATTTCCAGTTCCGGTGATTCATAAGACTGTTATTCGATCTCTAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733773" ref_strand="+" ref_description="SGN-E733773 [LB10DF06]">
      <seq>cggtggcactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttccgatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggaatcatatgtctaatagtcctaaatacatgaagaaaattataaaatcattccagtctcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52651" stop="54159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52949" g_stop="53861" g_length="913"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="913" r_length="913" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E733773" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52949" e_stop="53861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGAATG</genome_strand>
        <mrna_strand>CGGTGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGAATCATATGTCTAATAGTCCTAAATACATGAAGAAAATTATAAAATCATTCCAGTCTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321410" ref_strand="+" ref_description="SGN-E321410 [cTOB-23-M15]">
      <seq>cgcggcactagcaaatactctccaatcttcttcttcttctctctcatctgtaaaacaacaaaaaatggcggcttctgcacggatatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcggcatctagaacttcttcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccgatctatttccgtaatgaaccggcataaaacactggcttcttctcacaataagaggtgtatgtgttctccgacgaatcctccaggttcgttccgttgtattatgcataagaaaatggatattcgacggagtaatagtactagccaaacggcgtcgaattcgattcaattgcatatgatgcgatcggcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52650" stop="53650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52950" g_stop="53350" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E321410" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52950" e_stop="53350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGA</genome_strand>
        <mrna_strand>CGCGGCACTAGCAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCATCTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGATATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGGCATCTAGAACTTCTTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGATCTATTTCCGTAATGAACCGGCATAAAACACTGGCTTCTTCTCACAATAAGAGGTGTATGTGTTCTCCGACGAATCCTCCAGGTTCGTTCCGTTGTATTATGCATAAGAAAATGGATATTCGACGGAGTAATAGTACTAGCCAAACGGCGTCGAATTCGATTCAATTGCATATGATGCGATCGGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391613" ref_strand="+" ref_description="SGN-E391613 [TUS-24-C13]">
      <seq>gcactaagaaatactctccaatctacttcttcttctctctcaactgtaaaacaacgaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcaaattcgattcaattgcatatgaggcgatcggcgatgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52654" stop="53653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52954" g_stop="53353" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E391613" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52954" e_stop="53353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGA</genome_strand>
        <mrna_strand>GCACTAAGAAATACTCTCCAATCTACTTCTTCTTCTCTCTCAACTGTAAAACAACGAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCAAATTCGATTCAATTGCATATGAGGCGATCGGCGATGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247698" ref_strand="+" ref_description="SGN-E247698 [cLEF-42-A10]">
      <seq>cactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcaattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="52655" stop="53777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52955" g_stop="53477" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E247698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52955" e_stop="53477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACT</genome_strand>
        <mrna_strand>CACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCAATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391849" ref_strand="+" ref_description="SGN-E391849 [TUS-24-C13](-)">
      <seq>attccgattcaattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaccccccccccccccccctttgatttgtcctttttcgcatcaacagcgtcgccgtttggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgatttttagcgcagatctggccggatctccattgtttccggtgccggtgatacgttggacgtgaatagagctgttagaagtttgcttttctgtcgaatgctgacctccgcaatggatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacccggtggaggtcggaacggaacaacttttttgtgtactccggggaccaaaacgttaggatccataagtctaatagtctaaaatacatgaagaaaattataaaatcacccagttctcctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="53015" stop="54159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53314" g_stop="53851" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="564"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E391849" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53314" e_stop="53851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAG-AGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTA</genome_strand>
        <mrna_strand>ATTCCGATTCAATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTACCCCCCCCCCCCCCCCCTTTGATTTGTCCTTTTTCGCATCAACAGCGTCGCCGTTTGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTTTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTTGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTCGAATGCTGACCTCCGCAATGGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACCCGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGGGACCAAAACGTTAGGATCCATAAGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCACCCAGTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223405" ref_strand="+" ref_description="SGN-E223405 [cLEL-14-B4](-)">
      <seq>ttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggatccatatgtctaatagtctaaaatacatgaagaaaattataaaatcattcagttctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="53093" stop="54152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53393" g_stop="53852" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E223405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53393" e_stop="53852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</genome_strand>
        <mrna_strand>TTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223498" ref_strand="+" ref_description="SGN-E223498 [cLEL-14-B4](-)">
      <seq>cggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgtgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggatccatatgtctaatagtctaaaatacatgaagaaaattataaaatcattcagttctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="53152" stop="54152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53450" g_stop="53852" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E223498" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53450" e_stop="53852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</genome_strand>
        <mrna_strand>CGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTG-TGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433582" ref_strand="+" ref_description="SGN-E433582 [STM-58-P5]">
      <seq>tcacaaccctaatcccttttcttttcttttttttcaaatatttcttcaattccctttaggacagtcaaaccctacctaccctaaaaaccccacaccccctttctacttctctttccagaaagttttgattttgggattttgggttttcttgaactctctgtttctttttgtctttgcattttttgggttgttttgttttagggggagtaaaaatggaggttagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagatctgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaagatgatgatggagaagctgatgatcangatgaccatgatgctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66355" stop="69238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66638" g_stop="66972" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="397" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="68938" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="528" r_length="131" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E433582" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66638" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="68938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCCTAATTCCCCTT-TTCTTTTTTTTTCAAAATATTTCTTCAATTTCCTTTAGGACAGTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTC--TTTG-C-AT---TTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACG</genome_strand>
        <mrna_strand>TCACAACCCTAATCCCTTTTCTTTTCTTTTTTTTCAAATATTTCTTCAATTCCCTTTAGGACAGTCAAACCCTA-CCTACCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTTTGTCTTTGCATTTTTTGGGTTGTTTTG-TTTTAGGGGGAGTAAAAATGGA-G-GT-TAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGATCTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAAGATGATGATGGAGAAGCTGATGATCANGATGACCATGATGCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464295" ref_strand="+" ref_description="SGN-E464295 [cPRO-17-H9]">
      <seq>cttcaattccctttaggacagtcaaaccctacctaccctaaaaaccccacacccactttctacttctctttccagaaagttttgattttgggattttgggttttcttgaactctctgtttctttttgtctttgcattttttggttgttttgttttagggggagtaaaaatggaggttagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagacttgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaagatgatgatggagaagctgatgatcaggatgacgatgatgctgatgatgaagactttgcagccgaaggaggagatgatgatgatgatgaagaagcagatcctgaagacaatccagcatctaacggcaacgaaggcagcgatgacgaagacgacgatgatgatgaagacgatgaggacggggatgatgatgatgaagaggaagacgatgaagaagaggaggaagaggaggatcaaccacctgccaagaagaaaaaataaccatttccttgttatggttattctgtttttcttccatgctttgtggagtatgtagtagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66380" stop="69506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66680" g_stop="66972" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="353" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69206" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="755" r_length="402" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E464295" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66680" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTTCCTTTAGGACAGTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTC--TTTG-CATT---TTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGA-G--GAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAG-TATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGT</genome_strand>
        <mrna_strand>CTTCAATTCCCTTTAGGACAGTCAAACCCTA-CCTACCCTAAAAACCCCACACCCACTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTTTGTCTTTGCATTTTTTGGTTGTTTTG-TTTTAGGGGGAGTAAAAATGGA-G-GT-TAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGACTTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAAGATGATGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGATGAAGACTTTGCAGCCGAAGGAGGAGATGATGATGATGATGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAACGGCAACGAAGGCAGCGATGACGAAGACGACGATGATGATGAAGACGATGAGGACGGGGATGATGATGATGAAGAGGAAGACGATGAAGAAGAGGAGGAAGAGGAGGATCAACCACCTGCCAAGAAGAAAAAAT-AACCATTTCCTTGTTATGGTTATTCTGTTTTTCTTCCATGCTTTGTGGAGTATGTAGTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734896" ref_strand="+" ref_description="SGN-E734896 [LB13DE09]">
      <seq>gtcaaaccctaccctgccctaaaaaccccacaccccctttctacttctctttccagaaagttttgattttgggattttgggttttcttgaactctctgtttctttgcatttttttgggttgttttgttttttttgggagtaaaaatggaggtgtgtagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgaaatccttttggctgctcagagatctgctgcttctttgctcattgtggcaggaattatgctcaaggatgctgattcattgccagatctgataggaactgataaaaggtttccatttgaggagcttcataaaatggacaaagctgggcctgagaacaaagatggtagcgacacagaggatgatgatgaagatgacgatggagaagctgatgatcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaacccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66400" stop="69622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66700" g_stop="66972" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="332" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69322" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="847" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E734896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66700" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTA</genome_strand>
        <mrna_strand>GTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAG...............................................................................................GTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478401" ref_strand="+" ref_description="SGN-E478401 [cSTD-4-L23]">
      <seq>gtcaaaccctacctaccctaaaaaccccacaccccctttctacttctctttccagaaagttttgattttgggattttggattttcttgaactctctgtttctttttgtctttgcattttttgggttgttttgttttagggggagtaaaaatggaggttagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagatctgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaggatgatgatggagaagctgatgatcaggatgacgatgatgctgatgatgaagactttgcagccgaaggaggagatgatgatgatgaagaagaagcagatcctgaagacaatccagcatctaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66400" stop="69314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66700" g_stop="66972" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="334" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69014" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="541" r_length="207" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E478401" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66700" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTC--TTTG-C-AT---TTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGG</genome_strand>
        <mrna_strand>GTCAAACCCTA-CCTACCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGATTTTCTTGAACTCTCTGTTTCTTTTTGTCTTTGCATTTTTTGGGTTGTTTTG-TTTTAGGGGGAGTAAAAATGGAGGT---TAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGATCTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAGGATGATGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGATGAAGACTTTGCAGCCGAAGGAGGAGATGATGATGATGAAGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347447" ref_strand="+" ref_description="SGN-E347447 [cTOF-33-D17]">
      <seq>tcaaaccctaccctgccctaaaaaccccacaccccctttctacttctctttccagaaagttttgattttgggattttgggttttcttgaactctctgtttctttgcatttttttgggttgttttgttttttttgggagtaaaaatggaggtgtgtagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgaaatccttttggctgctcagagatctgctgcttctttgctcattgtggcaggaattatgctcaaggatgctgattcattgccagatctgataggaactgataaaaggtttccatttgaggagcttcataaaatggacaaagctgggcctgagaacaaagatggtagcgacacagaggatgatgatgaagatgacgatggagaagctgatgatcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggngatgatgaggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66401" stop="69383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66701" g_stop="66972" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="331" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69083" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="607" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E347447" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66701" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGA</genome_strand>
        <mrna_strand>TCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAG...............................................................................................GTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGNGATGATGAGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288085" ref_strand="+" ref_description="SGN-E288085 [cLES-7-C7]">
      <seq>ttgaactctctgtttctttgcatttttttgggttgttttgctttttttgggagtaaaaatggaggtgtgtagtttgaggtctgatgtatctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgaaatccttttggctgctcagagatctgctgcttctttgctcattgtggcaggaattatgctcaaggatgctgattcattgccagatctgataggaactgataaaaggtttccatttgaggagcttcataaaatggacaaagctgggcctgagaacaaagatggtagcgacacagaggatgatgatgaagatgacgatggagaagctgatgatcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66486" stop="69376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66786" g_stop="66972" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="246" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69076" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="515" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E288085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66786" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATG</genome_strand>
        <mrna_strand>TTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGCTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTATCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAG...............................................................................................GTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460042" ref_strand="+" ref_description="SGN-E460042 [cPRO-29-D10]">
      <seq>gttttcttgaactctctgtttctttttgtctttgcattttttggttgttttgttttagggggagtaaaaatggaggttagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagacttgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaagatgatgatggagaagctgatgatcaggatgacgatgatgctgatgatgaagactttgcagccgaaggaggagatgatgatgatgatgaagaagcagatcctgaagacaatccagcatctaacggcaacgaaggcagcgatgacgaagacgacgatgatgatgaagacgatgaggacggggatgatgatgatgaagaggaagacgatgaagaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66480" stop="69405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66792" g_stop="66972" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="195" r_length="175" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="254" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69105" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="552" r_length="298" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E460042" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66792" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAG</genome_strand>
        <mrna_strand>TCTTTTTGTCTTTGCATTTTT-TG-GTTGTTTTGTTTTAGG-GGGAGTAAAAATGGA-G-GT-TAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGACTTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAAGATGATGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGATGAAGACTTTGCAGCCGAAGGAGGAGATGATGATGATGATGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAACGGCAACGAAGGCAGCGATGACGAAGACGACGATGATGATGAAGACGATGAGGACGGGGATGATGATGATGAAGAGGAAGACGATGAAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403168" ref_strand="+" ref_description="SGN-E403168 [PPC-9-H14]">
      <seq>ttttgttttagggggagtaaaaatggaggttagtttgaggtctgatgtagctgtttttggaagaatggtggtggggtctgttcttgaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagatctgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaagatgatgatggagaagctgatgatcaggatgacgatgatgctgatgatgaagactttgcagccgaaggaggagatgatgatgatgaagaagaagcagatcctgaagacaatccagcatctaatggcaacgaaggcagcgatgacgaagacggcgatgatgatgaagacgatgaggacggggatgacgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66534" stop="69382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66821" g_stop="66972" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69082" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="482" r_length="275" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E403168" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66821" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGG</genome_strand>
        <mrna_strand>TTTTG-TTTTAGGGGGAGTAAAAATGGA-G-GT-TAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGATCTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAAGATGATGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGATGAAGACTTTGCAGCCGAAGGAGGAGATGATGATGATGAAGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAATGGCAACGAAGGCAGCGATGACGAAGACGGCGATGATGATGAAGACGATGAGGACGGGGATGACGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712058" ref_strand="+" ref_description="SGN-E712058 [FB03DB03]">
      <seq>ggtggggtctgttcttgaagctgtagttgctgaaatccttttggctgctcagagatctgctgcttctttgctcattgtggcaggaattatgctcaaggatgctgattcattgccagatctgataggaactgataaaaggtttccatttgaggagcttcataaaatggacaaagctgggcctgagaacaaagatggtagcgacacagaggatgatgatgaagatgacgatggagaagctgatgatcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66594" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66894" g_stop="66972" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="138" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69325" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="656" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="668"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E712058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66894" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAA</genome_strand>
        <mrna_strand>GGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAG...............................................................................................GTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603812" ref_strand="+" ref_description="SGN-E603812 [67000]">
      <seq>tggaagctgtagttgctgagacccttttggctgctcagagatctgttgcttctttgctcattgtggcaggaattatgctgaaggatgctgatgcattgccagatctgataggcactgataaaaggtttccattcgaggagcttcataaaatggacaaagctggacctgagaacaaagatggtagcgacacagaggacgatgatgaagatgatgatggagaagctgatgatcaggatgacgatgatgctgatgatgaagactttgcagcccgaaggaggagatgatgatgatgaagaagaagcagatcctgaagacaatccagcatctaatggcaacgaaggcagcgatgacgaagacgggatgatgatgaagacgatgaggacggggatgacgatgatgaagaggaagacgatgaagaagaggaggaagaggaggatcaaccacctgccaagaagaaaaaataaaccatttccttgttatgtatattctgttttttcttccatgcttgttggagtatgtagtagtagtaggaagagggggggattntagctctttctggtggaattaatcatccttttgcagaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="66610" stop="69563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66908" g_stop="66972" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68654" g_stop="68712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="124" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68808" g_stop="69263" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="587" r_length="463" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E603812" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66908" e_stop="66972"/>
          <exon e_start="68654" e_stop="68712"/>
          <exon e_start="68808" e_stop="69263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTGGTATAACACACTTGTCTTTTAACTTACATTTGTATTATTTTCTTGAAAAAGTTGTGATTTTTAGTTGTGGGGTTTGGATTTCTTGCTCTGTTTTCTGCTTATGTAGTTGTTTGAACAGTTTTTGTGTCAATTTTCATCGATTCTTGCTTGTAGAGTAGTTAAAGTTGGGAAATTTACTGTGCTGCATTAGGTTTAGTGTTATTGGAAACAGCCTCTTCTCTGCCTTCTGAGGTAGGGTTAAGGTTTTGCGTACACACTATCCTCTCTAGGCCCGACTTGTGGGATTACACGGGGTATGTTGTTGTATGTTAGTGTTTGTTCCCCAAGCTGCTAACTTTAGGTATTATATGTTAATAAGGTGTGTACTTGTTGAGGGAATTACAGAGAAGATTATTTATATTGTTTTGCTCTCTTGCTCATTGTGGTATTTCATATTTTTCCAACTTACACTCTTAGTATTTTCTTGAAAAAGTTGTGATTTTTATGGTGGGTTTTGGACTTTGTGCTATGTTTTCAGCCTTCGTAGTTGTTTGAACAGTTCTGTTCTAGAATTTCGTTGCTTGGGGCAGTTGAACCTAGGAAATTTTCTGTGTTGCATTAGGTTTCTTGTTTTGAGTTTTACCTGTAAGTAATTGTTCTCCAAGCTTCTAACTTTAGGTATTGTATGTTTATTACTTGTGTTTTTAATGATGGATTATGGATTTGTTGATATGTTTGAACAAGCTATTCTGTAAAATTTCATTTTTTTCTTGCTAATGGGGTAGCTAAAGGTCGGAAATTTTCTGTGCTGCATTAGGTTTACTTTTTTAAAAGTTAGTAATTGTTCTCCAAGCTACTGACTTTTGGTATTGTTATGTTTACAAGTTATGTTCTTTTGAAGTGATTGTGGAGTAAAGAGCTCTGTTACTTCCTTTTCTTCTTTTGCTTCTTTGCTCATTGCGGTATAACAAAACCATCCAACTTCTGCTCTTTATTTTCTTGAAAGATGTGATAGTTAATGGTGGCTTTTGGATATATTGCTCTGTTTTCTGCTTCTGTAGTTGTTTGAACTGTCTTGTGTAAAATTTCCTCGCTTATGGGTAGTTAAAGCTCCAAAATTTAGTTAAAGCTCCAAAATTTTCTGTGGATGTGGAATAAATGTCCACTTCCTATGCTGTTCAGACTCTAAAAATGTCAATGGGTGCAAGTCCAATTCTCCAAAAGTAGTGTATTTTGGATAATCTGACGCTGGTGTAGCATCAAAAGTGAAAAGTCCTATTTTGGATATATGAAATATATGGGCATAATAACAACAACTAAAGAGGGAGGGAGACAAATGGTCGTGAGAGAAACGATAGTAACATATAATGGTATTTGATAAGTGTGTTTCCTTGAAAAAAGTGCGTAAAAGTTTCTTGTTTCCGCAGATATTACCTATTTTTGTGTCCTTTGGGGAAAAACTCAGTTGTCCATAAATTGCAGGACACTTAAAATTCAATGATCTAATTCTCGTTTTGCTTCCTTACAAGCATAATGAAATTGTTAGAGTATTACTTGATGCAAAAGCTGGTTGTGCTTATTTAGTTTAGTTGCCCAACTTTCCGCTGTGCCTTTGATCGAACTTTACAATTACGACCTAGAAGCTTCTTGTTCCTCAAGTTCTCTCGTAATAGTTCCCTTATCAAAGTTTGTTATGCTTCAGGCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAGGTACTATTTGTCATCTTAGCTATAGTGCTATACTCACAGCACTCGGAACTGGAAAATTTCATGTGGCAAACACCAAATTTTGATGTCATTTTCAGGTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAG-GCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGA-G--GAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAG-TATGTTTATTCTG-TTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGA-AGGGGAATTTTAGCTC-TTCTGTTGGAATTAATCATCCTTTTGCAGACAAA</genome_strand>
        <mrna_strand>TGGAAGCTGTAGTTGCTGAGACCCTTTTGGCTGCTCAGAGATCTGTTGCTTCTTTGCTCATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATTATGCTGAAGGATGCTGATGCATTGCCAGATCTGATAGGCACTGATAAAAG...............................................................................................GTTTCCATTCGAGGAGCTTCATAAAATGGACAAAGCTGGACCTGAGAACAAAGATGGTAGCGACACAGAGGACGATGATGAAGATGATGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGATGAAGACTTTGCAGCCCGAAGGAGGAGATGATGATGATGAAGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAATGGCAACGAAGGCAGCGATGACGAAGACG-GGATGATGATGAAGACGATGAGGACGGGGATGACGATGATGAAGAGGAAGACGATGAAGAAGAGGAGGAAGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTTGTTATGTATATTCTGTTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTAGTAGGAAGAGGGGGGGATTNTAGCTCTTTCTGGTGGAATTAATCATCCTTTTGCAGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711620" ref_strand="+" ref_description="SGN-E711620 [FB02CA07]">
      <seq>ccgctagatggtagcgacacagaggatgatgatgaagatgaccatggagaagctgatgatcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68559" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68854" g_stop="69325" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="494"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E711620" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68854" e_stop="69325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAA</genome_strand>
        <mrna_strand>CCGCTAGATGGTAGCGACACAGAGGATGATGATGAAGATGACCATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270785" ref_strand="-" ref_description="SGN-E270785 [cLEM-6-A17]">
      <seq>atcaggatgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagaatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaaaaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68612" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68912" g_stop="69325" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="446"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E270785" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270785" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68912" e_stop="69325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAA</genome_strand>
        <mrna_strand>ATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGAATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAAAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340593" ref_strand="+" ref_description="SGN-E340593 [cTOF-1-K23]">
      <seq>atgacgatgatgctgatgacgaagacttttcaggcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68618" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68918" g_stop="69331" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E340593" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68918" e_stop="69331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTC</genome_strand>
        <mrna_strand>ATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567269" ref_strand="+" ref_description="SGN-E567269 [11367]">
      <seq>ctttgcagccgaaggaggagatgatgatgatgaagaagaagcagatcctgaagacaatccagcatctaatggcaacgaaggcagcgatgacgaagacggcgatgatgatgaagacgatgaggacggggatgacgatgatgaagaggaagacgatgaagaagaggaggaagaggaggatcaaccacctgccaagaagaaaaaataaaccatttccttgttatgtttattctgtttttcttccatgcttgttggagtatgtagtagtagtaggaagaggggggattttagctctttctgttggaattaatcatccttttgcagaccaaatgaacttcttgtcaccctatttgactgttagttatgatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68657" stop="69607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68943" g_stop="69307" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E567269" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68943" e_stop="69307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGA-G--GAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAG-TATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTC-TTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATA</genome_strand>
        <mrna_strand>CTTTGCAGCCGAAGGAGGAGATGATGATGATGAAGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAATGGCAACGAAGGCAGCGATGACGAAGACGGCGATGATGATGAAGACGATGAGGACGGGGATGACGATGATGAAGAGGAAGACGATGAAGAAGAGGAGGAAGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTTGTTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTAGTAGGAAGAGGGGGGATTTTAGCTCTTTCTGTTGGAATTAATCATCCTTTTGCAGACCAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344625" ref_strand="+" ref_description="SGN-E344625 [cTOF-14-O16]">
      <seq>gcgaaggaggagaggatgatgatgatgatgaagcagatcccgaagacaatccagcatctaatggcaatgaaggcagcgatgatgaagacgacgacgacgacgatgatgatgaggacggggatgatgaggaggaggaggaagacgatgacgaagaggaggaggaggatcaaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68651" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68951" g_stop="69332" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E344625" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68951" e_stop="69332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCT</genome_strand>
        <mrna_strand>GCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616995" ref_strand="-" ref_description="SGN-E616995 [90468]">
      <seq>gagatgatgatgatgaagaagaagcagatcctgaagacaatccagcatctaatggcaacgaaggcagcgatgacgaagacggcgatgatgatgaagacgatgaggacggggatgacgatgatgaagaggaagacgatgaagaagaggaggaagaggaggatcaaccacctgccaagaagaaaaaataaaccatttccttgttatgtttattctgtttttcttccatgcttgttggagtatgtagtagtagtaggaagaggggggattttagctctttctgttggaattaatcatccttttgcagaccaaatgaacttcttgtcaccctactttgactgttagttatgatatatattccatttaaccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68665" stop="69628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68960" g_stop="69325" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="386"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E616995" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616995" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68960" e_stop="69325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGA-G--GAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAG-TATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTC-TTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTA-TTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAA</genome_strand>
        <mrna_strand>GAGATGATGATGATGAAGAAGAAGCAGATCCTGAAGACAATCCAGCATCTAATGGCAACGAAGGCAGCGATGACGAAGACGGCGATGATGATGAAGACGATGAGGACGGGGATGACGATGATGAAGAGGAAGACGATGAAGAAGAGGAGGAAGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTTGTTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTAGTAGGAAGAGGGGGGATTTTAGCTCTTTCTGTTGGAATTAATCATCCTTTTGCAGACCAAATGAACTTCTTGTCACCCTACTTTGACTGTTAGTTATGATATATATTCCATTTAACCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433583" ref_strand="+" ref_description="SGN-E433583 [STM-58-P5]">
      <seq>gggttaaatggaatacacccataactaacagtcaaatagggtgacaagaagttcatttggtctgcaaaaggatgattaattccaacagaaagagctaaaatcccccctcttcctactactactacatactccaacaagcatggaagaaaaacagaataaacataacaaggaaatggtttattttttcttcttggcagggggttgatcctcctcttcctcctcttcttcatcgtcttcctcttcatcatcgtcatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="69600" stop="68770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69320" g_stop="69067" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E433583" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69320" e_stop="69067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTAAATGGAATATATATCATAACTAACAGTCAAATAGGGTGACAAGAAGTTCATTTTGTCTGCAAAAGGATGATTAATTCCAACAG-AAGAGCTAAAATTCCCCTTCTTCCTACAACTACTACATACTCCAACAAGCATGGAAGAAAAACAGAATAAACAT-ACTAGGAAATGGTTTATTTTTTCTTCTTGGCAGGTGGTTGATCCT-C-C-TCCTCCTCTTCGTCATCGTCTTCCTCCTCCTCCTCATCATCCCC</genome_strand>
        <mrna_strand>GGGTTAAATGGAATACA-CCCATAACTAACAGTCAAATAGGGTGACAAGAAGTTCATTTGGTCTGCAAAAGGATGATTAATTCCAACAGAAAGAGCTAAAATCCCCCCTCTTCCTACTACTACTACATACTCCAACAAGCATGGAAGAAAAACAGAATAAACATAACAAGGAAATGGTTTATTTTTTCTTCTTGGCAGGGGGTTGATCCTCCTCTTCCTCCTCTTCTTCATCGTCTTCCTCTTCATCATCGTCATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234421" ref_strand="+" ref_description="SGN-E234421 [cLEL-8-P22](-)">
      <seq>aggaagacaatgacgaagaggaggaggaggatcaaccagcctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctataaatactcttctaatattcatgcctctttacctccactaggtaaggataaggtctacgtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68786" stop="69685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69086" g_stop="69380" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="323"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E234421" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69086" e_stop="69380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCA-CCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTAC</genome_strand>
        <mrna_strand>AGGAAGACAATGACGAAGAGGAGGAGGAGGATCAACCAGCCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233991" ref_strand="+" ref_description="SGN-E233991 [cLEL-8-P22](-)">
      <seq>caaccacctgccaagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttgaaattaatcatccttttgcagacaaaataaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctataaatactcttctaatattcatgcctctttacctccactaggtaaggataaggtctacgtaaaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68818" stop="69685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69118" g_stop="69380" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="266" polyA_stop="290"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E233991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69118" e_stop="69380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTAC</genome_strand>
        <mrna_strand>CAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGAAATTAATCATCCTTTTGCAGACAAAATAAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350866" ref_strand="+" ref_description="SGN-E350866 [cTOS-7-E10]">
      <seq>caagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctataaatactcttctaatattcatgcctctttacctccactaggtaaggataaggtctacgtacactacctttctcgaattctactagtgggatttcactagatatgttgtactcttttcgaatcctactagtaggatttcactggatatttcttactcttttcaaatcctacctatggcctgtggaatttcactggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68829" stop="69820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69129" g_stop="69517" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="400"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E350866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69129" e_stop="69517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTACGTACACTACCTTTCTCGAATTCTACTAGTGGGATTTCACTAGATATGTTGTACTCTTTTCGAATCCTACTAGTAGGATTTCACTGGATATTTCTTACTCTTTTCAAATCCTACCTATGGCCTGTGGAATTTCACTGG</genome_strand>
        <mrna_strand>CAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTACGTACACTACCTTTCTCGAATTCTACTAGTGGGATTTCACTAGATATGTTGTACTCTTTTCGAATCCTACTAGTAGGATTTCACTGGATATTTCTTACTCTTTTCAAATCCTACCTATGGCCTGTGGAATTTCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357668" ref_strand="+" ref_description="SGN-E357668 [cTOS-24-G18]">
      <seq>caagaagaaaaaataaaccatttcctagtatgtttattctgtttttcttccatgcttgttggagtatgtagtagttgtaggaagaaggggaattttagctcttctgttggaattaatcatccttttgcagacaaaatgaacttcttgtcaccctatttgactgttagttatgatatatattccatttaaccctataaatactcttctaatattcatgcctctttacctccactaggtaaggataaggtctacgtacactacctttctcgaattctactagtgggatttcactagatatgttgtactcttttcgaatcctactagtaggatttcactggatatttcttactcttttcaaatcctacctatggcctgtggaatttcactggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="68829" stop="69820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69129" g_stop="69517" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="400"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E357668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69129" e_stop="69517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTACGTACACTACCTTTCTCGAATTCTACTAGTGGGATTTCACTAGATATGTTGTACTCTTTTCGAATCCTACTAGTAGGATTTCACTGGATATTTCTTACTCTTTTCAAATCCTACCTATGGCCTGTGGAATTTCACTGG</genome_strand>
        <mrna_strand>CAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTACGTACACTACCTTTCTCGAATTCTACTAGTGGGATTTCACTAGATATGTTGTACTCTTTTCGAATCCTACTAGTAGGATTTCACTGGATATTTCTTACTCTTTTCAAATCCTACCTATGGCCTGTGGAATTTCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622289" ref_strand="+" ref_description="SGN-E622289 [72654]">
      <seq>ccgatccacacaaggctgctgtcattggtgacactgttggtgaccccctcaaggacacatctggaccatcattgaacattcttatcaagctgatggctgtggagtcactcgttttcgctcctttcttcgccacccacggtggtctgctcttcaagatgttttaagacaaaagcaactcaactgcatcgaattttcgtctggtgatgtttttactcctttgcctacgttatttcgagaatttttcgtgttcatcgataggtaggatgtaggtctgtggagaactagtgatgatagcgaaatgtttatgaagagtttagaaaaatccaacttttttttcttaaaagagtaaaatgtatcctatatagtatatagtatatatatacttttaaagaagttgaaaattttgtaagcttttatttgttggtctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="72484" stop="71447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72184" g_stop="71757" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="441"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E622289" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72184" e_stop="71757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCACACAAGGCTGCTGTCATTGGTGACACTGTTGGTGACCCCCTCAAGGATACATCTGGACCATCATTGAACATTCTTATCAAGCTGATGGCTGTGGAGTCACTCGTTTTCGCTCCTTTCTTCGCCACCCACGGTGGTCTGCTCTTCAAGATGTTTTAAGACAAAACCAACTCAACTGCATCGAATTTCCATCTGGTGATGTTTTTACTCCTTTTGCCTACTTTATTTCGAGCAATTTTTCGTGTTCATCGATAGATTAGGATATGTAGGTTTGTGGAGAACTAGTGATGATAGCGAAATGTTTATGAAGAGTTTAGAAAAATCCAACATTCTTTTCTT-AAAGAGTAAAATGTATCCTATATAGATAGTATATAGTATATTTATACTTTTAGAGAAGTTGAAAATTTTGTAAGCTTTTATTTC</genome_strand>
        <mrna_strand>CCGATCCACACAAGGCTGCTGTCATTGGTGACACTGTTGGTGACCCCCTCAAGGACACATCTGGACCATCATTGAACATTCTTATCAAGCTGATGGCTGTGGAGTCACTCGTTTTCGCTCCTTTCTTCGCCACCCACGGTGGTCTGCTCTTCAAGATGTTTTAAGACAAAAGCAACTCAACTGCATCGAATTTTCGTCTGGTGATGTTTTTACTCC-TTTGCCTACGTTATTTCGAG-AATTTTTCGTGTTCATCGATAG-GTAGG--ATGTAGGTCTGTGGAGAACTAGTGATGATAGCGAAATGTTTATGAAGAGTTTAGAAAAATCCAACTTTTTTTTCTTAAAAGAGTAAAATGTATCC--TAT--ATAGTATATAGTATATATATACTTTTAAAGAAGTTGAAAATTTTGTAAGCTTTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725979" ref_strand="+" ref_description="SGN-E725979 [LA08DF11]">
      <seq>atttgttagcttcagctttgctgcaatgtacggcattgcgagttgctgcccttggaatgctgagcactatagccactggtttggcaattgatgcatatggtcccattagtgataatgcaggaggtattgctgagatggctggaatgagccacagaatcagagagagaaccgatgcacttgatgctgctcttaagatggttgaggaagtgcgtaggcaattcaacaccatccctggtctcatggaaggaactgccaagcctgactatgccacctgtgtcaagatctccacagatgcatcaatcaaggagatgattccacctggtgccctcgtcatgctcactccattgattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="73505" stop="72237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73206" g_stop="73027" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73026" i_stop="72708" i_length="319">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72707" g_stop="72536" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E725979" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73206" e_stop="73027"/>
          <exon e_start="72707" e_stop="72536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTAGCTTCAGTTTTGCTGCAATGTACGGCATTGC-AGTTGCTGCTCTCGGAATGCTGAGCACGATAGCTACTGGTTTGGCAATTGACGCCTATGGTCCCATCAGTGACAACGCAGGAGGCATTGCCGAGATGGCTGGAATGAGCCACAGAATAAGAGAAAGAACCGATGCCCTAGATGCTGCAGGAAACACCACTGCTGCTATTGGAAAGGTAAGTCAGATACTCTTGTACTTCACTGAATGTTGTTAGGTCTAGTTAGAATAGAAGGGCCATTCCAATCTCCATTGCCTCTTCATTAACGAGCTTCCTGTAATGGTAACAGGGATTCGCGATTGGATCTGCTGCTCTTGTATCTCTAGCCCTCTTTGGTGCATTTGTGAGTCGTGCAGGAATTTCTACTGTAGATGTCTTGACACCTAAAGTATTCATTGGCTTGCTCGTCGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGCTGCCCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAACACCATCCCTGGACTCATGGAAGGAACCGCAAAGCCTGATTATGCCAACTGCGTCAAGATCTCCACCGATGCATCAATCAAAGAAATGATCCCACCTGGTGCCCTTGTCATGCTTACTCCATTGATTGTA</genome_strand>
        <mrna_strand>ATTTGTTAGCTTCAGCTTTGCTGCAATGTACGGCATTGCGAGTTGCTGCCCTTGGAATGCTGAGCACTATAGCCACTGGTTTGGCAATTGATGCATATGGTCCCATTAGTGATAATGCAGGAGGTATTGCTGAGATGGCTGGAATGAGCCACAGAATCAGAGAGAGAACCGATGCACTTGA...............................................................................................................................................................................................................................................................................................................................TGCTGCTCTTAAGATGGTTGAGGAAGTGCGTAGGCAATTCAACACCATCCCTGGTCTCATGGAAGGAACTGCCAAGCCTGACTATGCCACCTGTGTCAAGATCTCCACAGATGCATCAATCAAGGAGATGATTCCACCTGGTGCCCTCGTCATGCTCACTCCATTGATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464116" ref_strand="+" ref_description="SGN-E464116 [cPRO-17-C17]">
      <seq>ctgagatggctggaatgagccacagaatcagagagagaactgatgcacttgatgctgcaggaaacaccactgctgctattggaaagggatttgctattggttctgctgcactcgtgtctcttgccctctttggtgcgtttgtcagccgagcagcaatttccactgtagatgtcttgacacctaaagtcttcattggtttgctcgtcggtgcaatgcttccttactggttctccgccatgacaatgaagagtgttggaagcgctgctcttaagatggttgaggaagtgcgcangcaattcaacaccatccctggtctcatggaaggaactgccaagcctgactatgccacctgtgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="73378" stop="72308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73078" g_stop="72993" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72992" i_stop="72881" i_length="112">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72880" g_stop="72608" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="359" r_length="273" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E464116" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73078" e_stop="72993"/>
          <exon e_start="72880" e_stop="72608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGATGGCTGGAATGAGCCACAGAATAAGAGAAAGAACCGATGCCCTAGATGCTGCAGGAAACACCACTGCTGCTATTGGAAAGGTAAGTCAGATACTCTTGTACTTCACTGAATGTTGTTAGGTCTAGTTAGAATAGAAGGGCCATTCCAATCTCCATTGCCTCTTCATTAACGAGCTTCCTGTAATGGTAACAGGGATTCGCGATTGGATCTGCTGCTCTTGTATCTCTAGCCCTCTTTGGTGCATTTGTGAGTCGTGCAGGAATTTCTACTGTAGATGTCTTGACACCTAAAGTATTCATTGGCTTGCTCGTCGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGCTGCCCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAACACCATCCCTGGACTCATGGAAGGAACCGCAAAGCCTGATTATGCCAACTGCGTCAAG</genome_strand>
        <mrna_strand>CTGAGATGGCTGGAATGAGCCACAGAATCAGAGAGAGAACTGATGCACTTGATGCTGCAGGAAACACCACTGCTGCTATTGGAAAG................................................................................................................GGATTTGCTATTGGTTCTGCTGCACTCGTGTCTCTTGCCCTCTTTGGTGCGTTTGTCAGCCGAGCAGCAATTTCCACTGTAGATGTCTTGACACCTAAAGTCTTCATTGGTTTGCTCGTCGGTGCAATGCTTCCTTACTGGTTCTCCGCCATGACAATGAAGAGTGTTGGAAGCGCTGCTCTTAAGATGGTTGAGGAAGTGCGCANGCAATTCAACACCATCCCTGGTCTCATGGAAGGAACTGCCAAGCCTGACTATGCCACCTGTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338074" ref_strand="+" ref_description="SGN-E338074 [cTOE-14-P2]">
      <seq>aacaaatctgctatctcttcatcttcttctcttatttatttatttttcccattcacgtttttttttcttccatctctctcacttttttcactattttctctctctaaatcacactttctctctctctagatttgtcggtgatgggaacaacaattctgccagatctcggaacggagattctgattccggtgtgtgcagttatcggaatcggatttgcgttggtacaatgggtgattgtttcgaaagttacggtatcgactgatggtaaatcgtcatctcccggtgccggcgctgatggtaagaatggatatgctgaatcgcttattgaagaagaagaagggattaatgaccatagcgttgttcgtaagtgtgctgaaattcaaaatgccattgctgaaggtgcaacctcgttcctgtttacggaataccagtatgttggtgttttcatggttgcttttgcattactgatctttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="76691" stop="74403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76391" g_stop="75993" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75992" i_stop="74780" i_length="1213">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74779" g_stop="74703" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="476" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E338074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76391" e_stop="75993"/>
          <exon e_start="74779" e_stop="74703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATCTGCTATCTCTTCATCTTCTTCTCTTATTTATTTATTTTTCCCATTCACGTTTTTTTTTCTTCCATCTCTCTCACTTTTTTCACTATTTTCTCTCTCTAAATCACACTTTCTCTCTCTCTAGATTTGTCGGTGATGGGAACAACAATTCTGCCAGATCTCGGAACGGAGATTCTGATTCCGGTGTGTGCAGTTATCGGAATCGGATTTGCGTTGGTACAATGGGTGATTGTTTCGAAAGTTACGGTATCGACTGATGGTAAATCGTCATCTCCCGGTGCCGGCGCTGATGGTAAGAATGGATATGCTGAATCGCTTATTGAAGAAGAAGAAGGGATTAATGACCATAGCGTTGTTCGTAAGTGTGCTGAAATTCAAAATGCCATTGCTGAAGGTACGTGAAATTAGTTATTATTTTTGAATTTTTTTTTTAGCTGCATTGAAATTGCTTAACAAGTTGTTACATTTGCATAATTTACTACTGATAAGTATACACATGTATATAAATTTTTTGTAATCGCAATGTTCGAGTCAGCTTTTCTGCATGTATGCAGATTCACGTGATACCAGTATTTGAGCTGCCTTTTGCGCACCTTGGGCTAATTCACATATACATGTAACTCTCTTTACCAAGGCTAGAACAAATGAGAAATCATATAGTGGATTTTTGGCTCAACCTGAGACGCCCAATTCTTAATCCACTTTATTGATTACTAGGACACACAGGGTGTGTGTGTATATGTGCATAAGTATATTGTATATTGTGTATGTTCGAATATATGTCTCTGTGTATTTTCTTTGTATGACGGTGGTGCTTGGTCCAGCTTAGGTACCTTTACTATACCAGCACAGATTGGTGGATCAGTATTTGAATTTTATGTGTTCTATGATGTTGTCAAGTTAATATTTAAATAATAACTGGGTTTCTTAGTGGATGTCTTAATATATGTATATTTAAAAGACTGACCCACAAGATCCACCCCTGGTGGGCCGAGTGAAAGAAATCACCCAGAGTTTATTGGTGCTGCTAGGATTTGGACGTGACACTTCATGGTTCTCTATCCACTTAATTGTCTCTGTGTATATAGAGTTCAAGGCTTCAAGTTGAAAGCAGTAGGTGAATGTGTACCCTGTTAAAAGGCTATACACTTGTTTATTTGTATGGTTTGCAATTAGATCTTGGAGGGTCTTTTCCTGGAGTTGAATGTTTGCTGTTGTGTGGGGTTGATACGTTTTTTTTTTATACTTAGGCCTTTAGTCTTAATTATAGGTGTTTCTAAATTCTTTAGTTGCCTACTTCATTTTCATGTTATTGAAAATTTCAAGTACTTGTACTAGTAAATTGAATAAACTTGTTCTGTTGTTTATATGTATACGTATGTGTGGGTAAAGGCAGCAGCTTTGATGCTCTGGTATACTCTCTCTGTACTTTACATGGTTTGTCGGTATACTTTCTTCTGATTTACTTGGCGTTTTTAGCATTTGACTGTTAAAGATCTAAGCTTTTCCTGCTTTGTGTGTTGCTTACTAGTTAAATAATGATTATTTTAACACATTAATATTTCCTGATGATAACTTTCTAACTACGGAATTAATCTATGCCACAGGTGCAACCTCGTTCCTGTTTACGGAATACCAGTATGTTGGTGTTTTCATGGTTGCTTTTGCATTACTGATCTTTCTA</genome_strand>
        <mrna_strand>AACAAATCTGCTATCTCTTCATCTTCTTCTCTTATTTATTTATTTTTCCCATTCACGTTTTTTTTTCTTCCATCTCTCTCACTTTTTTCACTATTTTCTCTCTCTAAATCACACTTTCTCTCTCTCTAGATTTGTCGGTGATGGGAACAACAATTCTGCCAGATCTCGGAACGGAGATTCTGATTCCGGTGTGTGCAGTTATCGGAATCGGATTTGCGTTGGTACAATGGGTGATTGTTTCGAAAGTTACGGTATCGACTGATGGTAAATCGTCATCTCCCGGTGCCGGCGCTGATGGTAAGAATGGATATGCTGAATCGCTTATTGAAGAAGAAGAAGGGATTAATGACCATAGCGTTGTTCGTAAGTGTGCTGAAATTCAAAATGCCATTGCTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACCTCGTTCCTGTTTACGGAATACCAGTATGTTGGTGTTTTCATGGTTGCTTTTGCATTACTGATCTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597316" ref_strand="+" ref_description="SGN-E597316 [40817]">
      <seq>ccctaccccccaccccccaaagaatccatttttcccaaattaagcaattaactacccaaaaccccaaaaattagtggctaaatagccactgattttctataaagttttaatcttgttgagtttacatgaaattggctttgtgggtgtgtgtttaaaacttatggggaagagaaagagaagagctgatctcaataaaactcattctcttactgacctctcatcaagttgatgtctatgcaacaaagtctttctcatcaattatggatatcatagatgattcttcaaaggcaacacaatgccaacaaccatctattgttcaccgtcgaaatattgaccaggcaatgtgttcaaagaatcctcatcactactatgggctccattatactcgacggaggtctgctaataatgctgaggcatcaacttcccgtggtgggacgactcctctttatgatgagctgatgtctgcaaagccagctagtaaatgcaactcggattctggacatgacacaggtgcaacttatttccttatctttttccacatacatcctgtgcaactctttagtagttgcacaaggatcctggtctcttttggaggccaagttcttgttttgccatcaaatgtaagataattctaatagaaattaagcgtgaccttgtaaatcacaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="82216" stop="86024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82512" g_stop="82724" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82725" i_stop="85273" i_length="2549">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85274" g_stop="85716" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="655" r_length="443" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E597316" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82512" e_stop="82724"/>
          <exon e_start="85274" e_stop="85716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCCACCCCACCCCCCAAAGAATCCATTTTTTCCCAAATTAAGCAATTAACTACCCAAAACCCCAAAAATTAGTGGCTAAATAGCCACTGATTTTCTAAAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTGGTAAAAATTGGTACTTTGCTTAAAATGCTTCTTGTTTTTTTTTTGTGCTGAATTGTTTTGTTTTCTTGATTGTTTTTCTATTGATTGTAATTTACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTTAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATTGTTAGGTTAATGGGAGTAGTTATTAATGTCTAAAACTAGAGTCTCATTTATTTCTTAATGTTGGAAGTATCGGGACTCAAGGGCGGAGCTAGGGATTTGGTAGAAATTACACGGTATATATATAAGATCAAAATTATATTTTTATGTGTGTTTATATATTGTACATGATGAATAATCCCCTTGGTTTGTTTGTGCTATTTGTTTATATTTTGAATCCTCTTAGCGAAAGTCGTGGCTCTGCAATGTTGGGACGTTTTCTTTAGGTTGACACTTGGATTTTTACATTTCACATATAATTGGTTGTTGTGTGTGTATTATACATATCGGGAAAAGAAAGAGGAGAACTGATCTCAATAAGATTTCTTCTTGTACTGGTAAAAGTTGGTTCTTGCTTATAAATGCTTCTTCTTCCCTTTTGTGTTTATTTCCGCTGAAAATGCTCACCCTGTTGTCTTATTTTCTTTATTCTTTTTCTTGTTTGGAAGAATTCTCGGTGGTTGATTTGACTGTTCGATTAACATTATACTTGGTGTTGTAATTTACTTGAAATTATGCAATGCTGCTCCAAAAAGGTGTTTAGAGGGGTAGAGTGGGTAGTGAGGTATTGTAGCTTCTTAATAGAAAAATTGCTTGTTTTATAGTTATCAATCACTAATGGTATAGTTCCATTTTTTTTAATGTGCTGGGAAGTATGGACGTTTTCTAGTGGTTAAATTCCAGCGGAGGCAAAAACACTAGGTGATTTCTTCCTATTTATCCAAGGTTAGGTGAACAGAGTTACGCAATACTTGTGTTGGTGGGAATACCAGATTTCTCGTGGAATTATTTGAGTGTGCACAAGCTAATCTGGACACCTTAGTTAGTAAAAAAAGGTATTGGGACGTTGGTCCCTTAGTTGACAGCTTGCTAACAAGTAAAGGTTGCTTTATTTACATTCTTTGTGGAGAGCAATTCATTTATCCAACAAAAGGTTTAACTTCCGATGAATTGTTAGGCTTTTAGAGTTTGGTGAATGGAATTTTAGTAGAAAGTTCCATTTCCTGTGTTTGAGTTTTTGGATTTTAGACGATTATTTCAGATCAATAATCTGAGTTTTTATGTCTTTTAAATTGCTTGTAGTTGGTTAGTCATGAGAATTCACTTCACTCTTTTAGAAACAGAAATAATATGTTCACTATTGATTGGATTTCCTTACTTTTAGTAGTGATATAGGATATCTAAGCATTGTTGAACATGACCTCGTGGCTAACTTACCGTTATCTGCGTATGACCTTCAACTGTCAAGGGATCACTTCTCCATACTCCTCACAATTTTCGCAAGACTTCTTTTCCTTCTGCTTCGTACTACGTTGGTTCCCAACTATGATATGTAACATATGCCATTTGCATCACCTTATTTTTCTACTTATGCGGAAGATGGTCTGATGGAAACTTGATCTTTTGCTGCATAGTATCCCATGCCATTTTCTTGTTCCATCTACCCTATCGTTGTCACACACCGAAAATTCCGATTATTTTGCCTTATTAAAGTGTAGCTGCACTAAGTTTCTTCTATTTGAATAGAATTCTTTCTAGAAGAAGCTCACCATCATTGTAATGCTTTTCGTGTGAGAAATTCTTAGAAGCATGACATACAAATTCTAGGATGATTTTTGTTCGTTCAGTATTTGTTCGAGTTCAACGGAGTCTCCCTCCTAAGTCCTACCAATCAACACTAGCACATACATACAGAATGAAAAAATGTTTGTGGAGATATTCATTGTGCTTGCATAGTTAGTTTCCTTGAGAAATGACAGTCAAATACTTGAATAGTAATTCGAAGCTTTATTCATGTTGCTGCAGACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAGGTTAGCTTTCTTTCCTGTCATGCAGTGGTAGTTAAATATTTCTGCTAGTTTTGCTATGTGGTTCAATCTTCAAAGTTACTCTGCTTACACATCTGCATCTGTTGCATTTTTGGGAATCATGTAAAATGGTGGAAGAATATATATCAGCTCGATTGACTGTATTCTATAGATATTGATGAGCTGGGATTAATTGACTTAGTTATTAATGTTGTGACATTCCCACCTTAAAAATTTATGAGGAGAAGGTTTTTATGTACATAATCGGGAGGTGAAAGAGTACCAACACTAAATGATTTGGCATTACAATGTTCTTGCTTATCCTTCTTAGATCTTTTCTTGTATTAATTGGCAGACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTT</genome_strand>
        <mrna_strand>CCCTACCCCCCACCCCCCAAAGAATCCAT-TTTTCCCAAATTAAGCAATTAACTACCCAAAACCCCAAAAATTAGTGGCTAAATAGCCACTGATTTTCTATAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGCCAACAACCATCTATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTGCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACGACTCCTCTTTATGATGAGCTGATGTCTGCAAAGCCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCCTGTGCAACTCTTTAGTAGTTGCACAAGGATCCTGGTCTCTTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAATTCTAATAGAAATTAAGCGTGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257248" ref_strand="+" ref_description="SGN-E257248 [cLEG-46-E17]">
      <seq>tgattttctaaaaagttttaatcttgttgagtttacatgaaattggctttgtgggtgtgtgtttaaaacttatggggaagagaaagagaagagctgatctcaataaaactcattctcttactgaccagctgcctccacctggaatggatgccttgtcgagacagacctctcatcaagttgatgtctatgcaacaaagtctttctcatcaattatggatatcatagatgattcttcaaaggcaacacaatgtcaacaaccatccattgttcaccgtcgaaatattgaccaggcaatgtgttcaaagaatcctcatcactactatgggctccattatactcgacggaggtcttctaataatgctgaggcatcaacttcccgtggtgggaccacttctttttatgatgagctgatgtctgcaaagtcagctagtaaatgcaactcggattctggacatgacacagagagtaaacctcaaaaaccagaaagtgttggcgttgcgcccagtttactggcaacaaatgcaacgtcttccaacgtcaccaagcagttttgcggattatgtcagaagcctttgagaaagaaacactatatgctcgatagcaacatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="82302" stop="87189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82602" g_stop="82724" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82725" i_stop="84880" i_length="2156">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84881" g_stop="84921" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="164" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84922" i_stop="85273" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85274" g_stop="85571" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="462" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85572" i_stop="86740" i_length="1169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86741" g_stop="86889" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="611" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E257248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82602" e_stop="82724"/>
          <exon e_start="84881" e_stop="84921"/>
          <exon e_start="85274" e_stop="85571"/>
          <exon e_start="86741" e_stop="86889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTCTAAAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTGGTAAAAATTGGTACTTTGCTTAAAATGCTTCTTGTTTTTTTTTTGTGCTGAATTGTTTTGTTTTCTTGATTGTTTTTCTATTGATTGTAATTTACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTTAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATTGTTAGGTTAATGGGAGTAGTTATTAATGTCTAAAACTAGAGTCTCATTTATTTCTTAATGTTGGAAGTATCGGGACTCAAGGGCGGAGCTAGGGATTTGGTAGAAATTACACGGTATATATATAAGATCAAAATTATATTTTTATGTGTGTTTATATATTGTACATGATGAATAATCCCCTTGGTTTGTTTGTGCTATTTGTTTATATTTTGAATCCTCTTAGCGAAAGTCGTGGCTCTGCAATGTTGGGACGTTTTCTTTAGGTTGACACTTGGATTTTTACATTTCACATATAATTGGTTGTTGTGTGTGTATTATACATATCGGGAAAAGAAAGAGGAGAACTGATCTCAATAAGATTTCTTCTTGTACTGGTAAAAGTTGGTTCTTGCTTATAAATGCTTCTTCTTCCCTTTTGTGTTTATTTCCGCTGAAAATGCTCACCCTGTTGTCTTATTTTCTTTATTCTTTTTCTTGTTTGGAAGAATTCTCGGTGGTTGATTTGACTGTTCGATTAACATTATACTTGGTGTTGTAATTTACTTGAAATTATGCAATGCTGCTCCAAAAAGGTGTTTAGAGGGGTAGAGTGGGTAGTGAGGTATTGTAGCTTCTTAATAGAAAAATTGCTTGTTTTATAGTTATCAATCACTAATGGTATAGTTCCATTTTTTTTAATGTGCTGGGAAGTATGGACGTTTTCTAGTGGTTAAATTCCAGCGGAGGCAAAAACACTAGGTGATTTCTTCCTATTTATCCAAGGTTAGGTGAACAGAGTTACGCAATACTTGTGTTGGTGGGAATACCAGATTTCTCGTGGAATTATTTGAGTGTGCACAAGCTAATCTGGACACCTTAGTTAGTAAAAAAAGGTATTGGGACGTTGGTCCCTTAGTTGACAGCTTGCTAACAAGTAAAGGTTGCTTTATTTACATTCTTTGTGGAGAGCAATTCATTTATCCAACAAAAGGTTTAACTTCCGATGAATTGTTAGGCTTTTAGAGTTTGGTGAATGGAATTTTAGTAGAAAGTTCCATTTCCTGTGTTTGAGTTTTTGGATTTTAGACGATTATTTCAGATCAATAATCTGAGTTTTTATGTCTTTTAAATTGCTTGTAGTTGGTTAGTCATGAGAATTCACTTCACTCTTTTAGAAACAGAAATAATATGTTCACTATTGATTGGATTTCCTTACTTTTAGTAGTGATATAGGATATCTAAGCATTGTTGAACATGACCTCGTGGCTAACTTACCGTTATCTGCGTATGACCTTCAACTGTCAAGGGATCACTTCTCCATACTCCTCACAATTTTCGCAAGACTTCTTTTCCTTCTGCTTCGTACTACGTTGGTTCCCAACTATGATATGTAACATATGCCATTTGCATCACCTTATTTTTCTACTTATGCGGAAGATGGTCTGATGGAAACTTGATCTTTTGCTGCATAGTATCCCATGCCATTTTCTTGTTCCATCTACCCTATCGTTGTCACACACCGAAAATTCCGATTATTTTGCCTTATTAAAGTGTAGCTGCACTAAGTTTCTTCTATTTGAATAGAATTCTTTCTAGAAGAAGCTCACCATCATTGTAATGCTTTTCGTGTGAGAAATTCTTAGAAGCATGACATACAAATTCTAGGATGATTTTTGTTCGTTCAGTATTTGTTCGAGTTCAACGGAGTCTCCCTCCTAAGTCCTACCAATCAACACTAGCACATACATACAGAATGAAAAAATGTTTGTGGAGATATTCATTGTGCTTGCATAGTTAGTTTCCTTGAGAAATGACAGTCAAATACTTGAATAGTAATTCGAAGCTTTATTCATGTTGCTGCAGACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAGGTTAGCTTTCTTTCCTGTCATGCAGTGGTAGTTAAATATTTCTGCTAGTTTTGCTATGTGGTTCAATCTTCAAAGTTACTCTGCTTACACATCTGCATCTGTTGCATTTTTGGGAATCATGTAAAATGGTGGAAGAATATATATCAGCTCGATTGACTGTATTCTATAGATATTGATGAGCTGGGATTAATTGACTTAGTTATTAATGTTGTGACATTCCCACCTTAAAAATTTATGAGGAGAAGGTTTTTATGTACATAATCGGGAGGTGAAAGAGTACCAACACTAAATGATTTGGCATTACAATGTTCTTGCTTATCCTTCTTAGATCTTTTCTTGTATTAATTGGCAGACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTTGTAAATCAATTTTCATGTTCTTTTTGTATCAGTCTTGCGTGATTCTCTTATCTTTCTTTTGAATCTACTTGGTTGAATACATAGACGACCCCCTAAATGGCTGAGCCAAGAAAAAAGATTCATTTAGACACCTATCTAGGGCCCCAACCTATTGAAAGGTTTACATTATTAAAAATGTGTATTGATCACTTATCTTACAATTCTAAACAAACTAAGGTGCATGAACGTTTTTTGCTCTTGATATGACAAATAAAACCAATGACCAAAGAAAAATAAGAATTCATGACATGAAAGAGAGACAAAGGGAGAGGAGTTGAAAAGAAGAACTCTGTAAAGCTTCATTTTCTGGCAACACCAGTTCTTTCGGGGAGGAGGAAGAAGAAGAGGAGTTGGAAAAAATTTCTCCTCCGAAAGATCCAATCTTTCTGCAAAACAGAGACACGTACATCAAGGCGTGTTCAATAGGCACATTCTTGATAACATAAGGTGTTCAATGCATAGGGCCTCTAGATTAGTTGTCTAAATGAAAAACAAAAATGTTTGGACAAGTTCAAGTTGTCGTTCGTGTATTAAGCCAATCATCTTTAAGCAACACTTGAGCAGTGTTGTCAAAGGCGCACTTAGGCCTTCAAGCGAGGCTCAAAATGTGTTGAGCGCTTCACCTTGCTTAAAGTATGCTTTAGTGTTATCATCAAATCTTCTAAGTCATACTTTTCTTTGTCAATGAGTCTCTTCCAAAGAGGCGACATTAAACAACTGAAATTTCATTTTGTCGTATTTTTTTTCACTTTCTTTGTTCATATATTTGTCATTCATGCCTATAATTATTAGTCTTCGACTAAATATATATATTTGTATTTTCTTGCTCCCTTTGCGTCTTTTTTCATTAAAGCTCATGCTTTATTTTCGATTTGCACTTAAAGCCCCAACGGATTCCGCTTTATGTTTTTGATAACACTGCACTATTAACATCTTTGATATTATTTTCTGCTTCTCACTTGACTTCCTTTGCATTTCTTTTCAGAGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCT</genome_strand>
        <mrna_strand>TGATTTTCTAAAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAG................................................................................................................................................................................................................................................................................................................................................................ACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705003" ref_strand="+" ref_description="SGN-E705003 [FA25DE12]">
      <seq>gggaagagaaagagaagagctgatctcaataccccttaaactcttactgaccagctgcctccacctggaatggatgccttgtcgagacagacctctcatcaagttgatctctatgcaacaaagtctttctcatcaattatggatatcatagatgattcttcaaaggcaacacaatgtcaacaaccatccattgttcaccgtcgaaatattgaccaggcaatgtgttcaaagaatcctcatcactactatgggctccattatactcgacggaggtcttctaataatgctgaggcatcaacttcccgtggtgggaccacttctttttatgatgagctgatgtctgcaaagtcagctagtaaatgcaactcggattctggacatgacacagagagtaaacctcaaaaaccagaaagtgttggcgttgcgcccagtttactggcaacaaatgcaacgtcttccaacgtcaccaagcagttttgcggattatgtcagaagcctttgagaaagaaacactatatgctcgatagcaacataccttcctacgagccctctgttgtggcagttttagtttgtggtcatctttaccatgctgattgtttggaggaaagaactcatcatgacaatgcaacagatcctccctgcccgatctgtcgtggcatcaattgagtaggtttgcttctctacctgaatgtaaataacctcagatgcagatttcggatttgaaaagctccgagttgtgtaaacatatatacatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="82376" stop="87410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82676" g_stop="82724" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82725" i_stop="84880" i_length="2156">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84881" g_stop="84921" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="90" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84922" i_stop="85273" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85274" g_stop="85571" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="388" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85572" i_stop="86740" i_length="1169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86741" g_stop="87110" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="758" r_length="370" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E705003" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82676" e_stop="82724"/>
          <exon e_start="84881" e_stop="84921"/>
          <exon e_start="85274" e_stop="85571"/>
          <exon e_start="86741" e_stop="87110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTGGTAAAAATTGGTACTTTGCTTAAAATGCTTCTTGTTTTTTTTTTGTGCTGAATTGTTTTGTTTTCTTGATTGTTTTTCTATTGATTGTAATTTACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTTAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATTGTTAGGTTAATGGGAGTAGTTATTAATGTCTAAAACTAGAGTCTCATTTATTTCTTAATGTTGGAAGTATCGGGACTCAAGGGCGGAGCTAGGGATTTGGTAGAAATTACACGGTATATATATAAGATCAAAATTATATTTTTATGTGTGTTTATATATTGTACATGATGAATAATCCCCTTGGTTTGTTTGTGCTATTTGTTTATATTTTGAATCCTCTTAGCGAAAGTCGTGGCTCTGCAATGTTGGGACGTTTTCTTTAGGTTGACACTTGGATTTTTACATTTCACATATAATTGGTTGTTGTGTGTGTATTATACATATCGGGAAAAGAAAGAGGAGAACTGATCTCAATAAGATTTCTTCTTGTACTGGTAAAAGTTGGTTCTTGCTTATAAATGCTTCTTCTTCCCTTTTGTGTTTATTTCCGCTGAAAATGCTCACCCTGTTGTCTTATTTTCTTTATTCTTTTTCTTGTTTGGAAGAATTCTCGGTGGTTGATTTGACTGTTCGATTAACATTATACTTGGTGTTGTAATTTACTTGAAATTATGCAATGCTGCTCCAAAAAGGTGTTTAGAGGGGTAGAGTGGGTAGTGAGGTATTGTAGCTTCTTAATAGAAAAATTGCTTGTTTTATAGTTATCAATCACTAATGGTATAGTTCCATTTTTTTTAATGTGCTGGGAAGTATGGACGTTTTCTAGTGGTTAAATTCCAGCGGAGGCAAAAACACTAGGTGATTTCTTCCTATTTATCCAAGGTTAGGTGAACAGAGTTACGCAATACTTGTGTTGGTGGGAATACCAGATTTCTCGTGGAATTATTTGAGTGTGCACAAGCTAATCTGGACACCTTAGTTAGTAAAAAAAGGTATTGGGACGTTGGTCCCTTAGTTGACAGCTTGCTAACAAGTAAAGGTTGCTTTATTTACATTCTTTGTGGAGAGCAATTCATTTATCCAACAAAAGGTTTAACTTCCGATGAATTGTTAGGCTTTTAGAGTTTGGTGAATGGAATTTTAGTAGAAAGTTCCATTTCCTGTGTTTGAGTTTTTGGATTTTAGACGATTATTTCAGATCAATAATCTGAGTTTTTATGTCTTTTAAATTGCTTGTAGTTGGTTAGTCATGAGAATTCACTTCACTCTTTTAGAAACAGAAATAATATGTTCACTATTGATTGGATTTCCTTACTTTTAGTAGTGATATAGGATATCTAAGCATTGTTGAACATGACCTCGTGGCTAACTTACCGTTATCTGCGTATGACCTTCAACTGTCAAGGGATCACTTCTCCATACTCCTCACAATTTTCGCAAGACTTCTTTTCCTTCTGCTTCGTACTACGTTGGTTCCCAACTATGATATGTAACATATGCCATTTGCATCACCTTATTTTTCTACTTATGCGGAAGATGGTCTGATGGAAACTTGATCTTTTGCTGCATAGTATCCCATGCCATTTTCTTGTTCCATCTACCCTATCGTTGTCACACACCGAAAATTCCGATTATTTTGCCTTATTAAAGTGTAGCTGCACTAAGTTTCTTCTATTTGAATAGAATTCTTTCTAGAAGAAGCTCACCATCATTGTAATGCTTTTCGTGTGAGAAATTCTTAGAAGCATGACATACAAATTCTAGGATGATTTTTGTTCGTTCAGTATTTGTTCGAGTTCAACGGAGTCTCCCTCCTAAGTCCTACCAATCAACACTAGCACATACATACAGAATGAAAAAATGTTTGTGGAGATATTCATTGTGCTTGCATAGTTAGTTTCCTTGAGAAATGACAGTCAAATACTTGAATAGTAATTCGAAGCTTTATTCATGTTGCTGCAGACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAGGTTAGCTTTCTTTCCTGTCATGCAGTGGTAGTTAAATATTTCTGCTAGTTTTGCTATGTGGTTCAATCTTCAAAGTTACTCTGCTTACACATCTGCATCTGTTGCATTTTTGGGAATCATGTAAAATGGTGGAAGAATATATATCAGCTCGATTGACTGTATTCTATAGATATTGATGAGCTGGGATTAATTGACTTAGTTATTAATGTTGTGACATTCCCACCTTAAAAATTTATGAGGAGAAGGTTTTTATGTACATAATCGGGAGGTGAAAGAGTACCAACACTAAATGATTTGGCATTACAATGTTCTTGCTTATCCTTCTTAGATCTTTTCTTGTATTAATTGGCAGACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTTGTAAATCAATTTTCATGTTCTTTTTGTATCAGTCTTGCGTGATTCTCTTATCTTTCTTTTGAATCTACTTGGTTGAATACATAGACGACCCCCTAAATGGCTGAGCCAAGAAAAAAGATTCATTTAGACACCTATCTAGGGCCCCAACCTATTGAAAGGTTTACATTATTAAAAATGTGTATTGATCACTTATCTTACAATTCTAAACAAACTAAGGTGCATGAACGTTTTTTGCTCTTGATATGACAAATAAAACCAATGACCAAAGAAAAATAAGAATTCATGACATGAAAGAGAGACAAAGGGAGAGGAGTTGAAAAGAAGAACTCTGTAAAGCTTCATTTTCTGGCAACACCAGTTCTTTCGGGGAGGAGGAAGAAGAAGAGGAGTTGGAAAAAATTTCTCCTCCGAAAGATCCAATCTTTCTGCAAAACAGAGACACGTACATCAAGGCGTGTTCAATAGGCACATTCTTGATAACATAAGGTGTTCAATGCATAGGGCCTCTAGATTAGTTGTCTAAATGAAAAACAAAAATGTTTGGACAAGTTCAAGTTGTCGTTCGTGTATTAAGCCAATCATCTTTAAGCAACACTTGAGCAGTGTTGTCAAAGGCGCACTTAGGCCTTCAAGCGAGGCTCAAAATGTGTTGAGCGCTTCACCTTGCTTAAAGTATGCTTTAGTGTTATCATCAAATCTTCTAAGTCATACTTTTCTTTGTCAATGAGTCTCTTCCAAAGAGGCGACATTAAACAACTGAAATTTCATTTTGTCGTATTTTTTTTCACTTTCTTTGTTCATATATTTGTCATTCATGCCTATAATTATTAGTCTTCGACTAAATATATATATTTGTATTTTCTTGCTCCCTTTGCGTCTTTTTTCATTAAAGCTCATGCTTTATTTTCGATTTGCACTTAAAGCCCCAACGGATTCCGCTTTATGTTTTTGATAACACTGCACTATTAACATCTTTGATATTATTTTCTGCTTCTCACTTGACTTCCTTTGCATTTCTTTTCAGAGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGT</genome_strand>
        <mrna_strand>GGGAAGAGAAAGAGAAGAGCTGATCTCAATACCCCTTAAACTCTTACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAG................................................................................................................................................................................................................................................................................................................................................................ACCTCTCATCAAGTTGATCTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAAATAACCTCAGATGCAGATTTCGGATTTGAAAAGCTCCGAGTTGTGTAAACATATATACATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330584" ref_strand="+" ref_description="SGN-E330584 [cTOD-8-M22]">
      <seq>acttggaattatgcaatgctagtaagcggcggagccagtattttcactaggttacgaaatatgaatagtaaggggttcaaaattcacttttgttgtcttataaatagttcaatttgttgtcgaatggggttcgaatgaagcccttgaccctacctggctccgccctccaaaaaaggtgtttagattgggggttgtggttataggttgttaattgagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="82518" stop="83338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82818" g_stop="83038" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E330584" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82818" e_stop="83038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTTAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATT</genome_strand>
        <mrna_strand>ACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTCAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245139" ref_strand="+" ref_description="SGN-E245139 [cLEF-13-N4]">
      <seq>gaatcctcatcactactatgggctccattatactcgacggaggtcttctaataatgctgaggcatcaacttcccgtggtgggaccacttctttttatgatgagctgatgtctgcaaagtcagctagtaaatgcaactcggattctggacatgacacagagagtaaacctcaaaaaccagaaagtgttggcgttgcgcccagtttactggcaacaaatgcaacgtcttccaacgtcaccaagcagttttgcggattatgtcagaagcctttgagaaagaaacactatatgctcgatagcaacataccttcctacgagccctctgttgtggcagttttagtttgtggtcatctttaccatgctgattgtttggaggaaagaactcatcatgacaatgcaacagatcctccctgcccgatctgtcgtggcatcaattgagtaggtttgcttctctacctgaatgtagataacctcagatgcagattcaggatttgaaaagctccgagttgtgtagacatatatacatatgtcttaagatctcgatacaatgtaactatctgntatgtttatatatagttcgagtcaaaggtgcgcgtttaatcttttggataccagatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="85114" stop="87503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85414" g_stop="85571" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85572" i_stop="86740" i_length="1169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86741" g_stop="87203" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="621" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E245139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85414" e_stop="85571"/>
          <exon e_start="86741" e_stop="87203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTTGTAAATCAATTTTCATGTTCTTTTTGTATCAGTCTTGCGTGATTCTCTTATCTTTCTTTTGAATCTACTTGGTTGAATACATAGACGACCCCCTAAATGGCTGAGCCAAGAAAAAAGATTCATTTAGACACCTATCTAGGGCCCCAACCTATTGAAAGGTTTACATTATTAAAAATGTGTATTGATCACTTATCTTACAATTCTAAACAAACTAAGGTGCATGAACGTTTTTTGCTCTTGATATGACAAATAAAACCAATGACCAAAGAAAAATAAGAATTCATGACATGAAAGAGAGACAAAGGGAGAGGAGTTGAAAAGAAGAACTCTGTAAAGCTTCATTTTCTGGCAACACCAGTTCTTTCGGGGAGGAGGAAGAAGAAGAGGAGTTGGAAAAAATTTCTCCTCCGAAAGATCCAATCTTTCTGCAAAACAGAGACACGTACATCAAGGCGTGTTCAATAGGCACATTCTTGATAACATAAGGTGTTCAATGCATAGGGCCTCTAGATTAGTTGTCTAAATGAAAAACAAAAATGTTTGGACAAGTTCAAGTTGTCGTTCGTGTATTAAGCCAATCATCTTTAAGCAACACTTGAGCAGTGTTGTCAAAGGCGCACTTAGGCCTTCAAGCGAGGCTCAAAATGTGTTGAGCGCTTCACCTTGCTTAAAGTATGCTTTAGTGTTATCATCAAATCTTCTAAGTCATACTTTTCTTTGTCAATGAGTCTCTTCCAAAGAGGCGACATTAAACAACTGAAATTTCATTTTGTCGTATTTTTTTTCACTTTCTTTGTTCATATATTTGTCATTCATGCCTATAATTATTAGTCTTCGACTAAATATATATATTTGTATTTTCTTGCTCCCTTTGCGTCTTTTTTCATTAAAGCTCATGCTTTATTTTCGATTTGCACTTAAAGCCCCAACGGATTCCGCTTTATGTTTTTGATAACACTGCACTATTAACATCTTTGATATTATTTTCTGCTTCTCACTTGACTTCCTTTGCATTTCTTTTCAGAGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGTCTTAAGATCTCGATACAATGTAACTATCTGTTATGTTTATATATAGTTCGAGTCAAAGGTGCGCGTTTAATCTTTTGGATACCAGATGTATTG</genome_strand>
        <mrna_strand>GAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGTCTTAAGATCTCGATACAATGTAACTATCTGNTATGTTTATATATAGTTCGAGTCAAAGGTGCGCGTTTAATCTTTTGGATACCAGATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371774" ref_strand="+" ref_description="SGN-E371774 [TUS-30-M21](-)">
      <seq>ggcatcaacttcccgtggtgggaccacttctttttatgatgagctgatgtctgcaaagtcagctagtaaatgcaactcggattctggacatgacacagagagtaaacctcaaaaaccagaaagtgttggcgttgcgcccagtttactggcaacaaatgcaacgtcttccaacgtcaccaagcagttttgcggattatgtcagaagcctttgagaaagaaacactatatgctcgatagcaacataccttcctacgagccctctgttgtggcagttttagtttgtggtcatctttaccatgctgattgtttggaggaaagaactcatcatgacaatgcaacagatcctccctgcccgatctgtcgtggcatcaattgagtaggtttgcttctctacctgaatgtagataacctcagatgcagattcaggatttgaaaagctccgagttgtgtagacatatatacatatgtcttaagatctcgatacaatgtaactatctgttatgtttatatatagttcgagtcaaaggtgcgcgtttaatcttttggataccagatgtattgagagggcaatgtagcttacaagatgcatcaacaatcagtataaacttttcagtgttttctttgaaaatatttgtgatgtattagtctaactctaatagaatttatataagtcattagtttatgacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="85174" stop="87630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85474" g_stop="85571" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85572" i_stop="86740" i_length="1169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86741" g_stop="87330" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="688" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="699"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E371774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85474" e_stop="85571"/>
          <exon e_start="86741" e_stop="87330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTTGTAAATCAATTTTCATGTTCTTTTTGTATCAGTCTTGCGTGATTCTCTTATCTTTCTTTTGAATCTACTTGGTTGAATACATAGACGACCCCCTAAATGGCTGAGCCAAGAAAAAAGATTCATTTAGACACCTATCTAGGGCCCCAACCTATTGAAAGGTTTACATTATTAAAAATGTGTATTGATCACTTATCTTACAATTCTAAACAAACTAAGGTGCATGAACGTTTTTTGCTCTTGATATGACAAATAAAACCAATGACCAAAGAAAAATAAGAATTCATGACATGAAAGAGAGACAAAGGGAGAGGAGTTGAAAAGAAGAACTCTGTAAAGCTTCATTTTCTGGCAACACCAGTTCTTTCGGGGAGGAGGAAGAAGAAGAGGAGTTGGAAAAAATTTCTCCTCCGAAAGATCCAATCTTTCTGCAAAACAGAGACACGTACATCAAGGCGTGTTCAATAGGCACATTCTTGATAACATAAGGTGTTCAATGCATAGGGCCTCTAGATTAGTTGTCTAAATGAAAAACAAAAATGTTTGGACAAGTTCAAGTTGTCGTTCGTGTATTAAGCCAATCATCTTTAAGCAACACTTGAGCAGTGTTGTCAAAGGCGCACTTAGGCCTTCAAGCGAGGCTCAAAATGTGTTGAGCGCTTCACCTTGCTTAAAGTATGCTTTAGTGTTATCATCAAATCTTCTAAGTCATACTTTTCTTTGTCAATGAGTCTCTTCCAAAGAGGCGACATTAAACAACTGAAATTTCATTTTGTCGTATTTTTTTTCACTTTCTTTGTTCATATATTTGTCATTCATGCCTATAATTATTAGTCTTCGACTAAATATATATATTTGTATTTTCTTGCTCCCTTTGCGTCTTTTTTCATTAAAGCTCATGCTTTATTTTCGATTTGCACTTAAAGCCCCAACGGATTCCGCTTTATGTTTTTGATAACACTGCACTATTAACATCTTTGATATTATTTTCTGCTTCTCACTTGACTTCCTTTGCATTTCTTTTCAGAGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGTCTTAAGATCTCGATACAATGTAACTATCTGTTATGTTTATATATAGTTCGAGTCAAAGGTGCGCGTTTAATCTTTTGGATACCAGATGTATTGAGAGGGCAATGTAGCTTACAAGATGCATCAACAATCAGTATAAACTTTTCAGTGTTTTCTTTGAAAATATTTGTGATGTATTAGTCTAACTCTAATAGAATTTATATAAGTCATTAGTTTATGACAA</genome_strand>
        <mrna_strand>GGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGTCTTAAGATCTCGATACAATGTAACTATCTGTTATGTTTATATATAGTTCGAGTCAAAGGTGCGCGTTTAATCTTTTGGATACCAGATGTATTGAGAGGGCAATGTAGCTTACAAGATGCATCAACAATCAGTATAAACTTTTCAGTGTTTTCTTTGAAAATATTTGTGATGTATTAGTCTAACTCTAATAGAATTTATATAAGTCATTAGTTTATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475309" ref_strand="+" ref_description="SGN-E475309 [cSTB-39-L6]">
      <seq>atttcctattaacagaaagaagaaaaaaactaaccccatttctccatactttcaactctctgaaaatccattaaagggtgttccatttttccattctcttggaatttcgtaaaccctttgtgtttttatagccattttctcttttttttaatccccaactctttgattttgccggaaaaaagaaccccattttccggcaggtcaaaggggtagtggattcattcttttcttgaaaatttgaaatctttatgtggttgggtgtttgattttgatatacatttgctaaaaagtggaaaaaaatttgaactttataccaaatatagagatttcaagaattgaggggaaatggtgactgaagtgattccggtgaggaatccgataagcacggtgttatagagagttggggtttatgggtttgtagggaataacaacactacaaagagatgtaatattgaatttcaagatgaaagtaatacaatggaaatggtgcagcttggtgctgaaaggacaaagaatgtgcttattttgatgagtgatacaaggggtggacatagggcttcagctgaggcgattcgcgatgcttttcatttggaatttggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="88249" stop="89449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88549" g_stop="89149" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E475309" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88549" e_stop="89149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTATTAACAGAAAG-AGAAAAAAACT--CCCCATTTCTCCATGCTTTCAACTCTCTGAAAATCCTTTAAAGGGTGTCCAATTCTTCCATTTTCTTGAAATTTTGTTGACCCTTTGTGTTTTTATAGCCATTTTCTC-TTTTTTTAATCCCCAACTCTTTGATCTTGCCGGGAAAAAGAACCCCATTTTCCGGCAGGTCAAAGGAGTGGTGGATTCATTCTTTTCTTGATAATTTGAAATCTTTATGTGGATGGGTGTTTGGTTTTGATATACATTTGCTAAAAAGTGGAAAAAGATTTGAACTTTTTTACCAAATATAGAGATTTCAAGAATTGAGGAAAAATGGTGACTGAGGTGATTCCGGTGAGGAATCCAATAAGCACGGTATTGGAGAGAGTTGGGGTTTATGGGTTTGTAGGGAATAACAATATTACAAAGAGATGTAATATTGAATTTCAAGATGAAAATGATACAATGGAAATGGTGCAGCTTGGTGCTGAAAGGACAAAAAATGTGCTTATTTTGATGAGTGATACAGGGGGTGGGCATAGGGCTTCAGCTGAGGCTATTCGCGATGCGTTTCATTTGGAATTTGGGGATG</genome_strand>
        <mrna_strand>ATTTCCTATTAACAGAAAGAAGAAAAAAACTAACCCCATTTCTCCATACTTTCAACTCTCTGAAAATCCATTAAAGGGTGTTCCATTTTTCCATTCTCTTGGAATTTCGTAAACCCTTTGTGTTTTTATAGCCATTTTCTCTTTTTTTTAATCCCCAACTCTTTGATTTTGCCGGAAAAAAGAACCCCATTTTCCGGCAGGTCAAAGGGGTAGTGGATTCATTCTTTTCTTGAAAATTTGAAATCTTTATGTGGTTGGGTGTTTGATTTTGATATACATTTGCTAAAAAGTGGAAAAAAATTTGAAC-TTTATACCAAATATAGAGATTTCAAGAATTGAGGGGAAATGGTGACTGAAGTGATTCCGGTGAGGAATCCGATAAGCACGGTGTTATAGAGAGTTGGGGTTTATGGGTTTGTAGGGAATAACAACACTACAAAGAGATGTAATATTGAATTTCAAGATGAAAGTAATACAATGGAAATGGTGCAGCTTGGTGCTGAAAGGACAAAGAATGTGCTTATTTTGATGAGTGATACAAGGGGTGGACATAGGGCTTCAGCTGAGGCGATTCGCGATGCTTTTCATTTGGAATTTGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365135" ref_strand="+" ref_description="SGN-E365135 [cLPP-17-K6]">
      <seq>gagaaaaaaactccccatttctccatgctttcaactctctgaaaatccttcaaagggtgtccaattcttccattttcttgaaattttgttgaccctttgtgtttttatagccatttttctctttttttaatccccaactctttgatcttgccgggaaaaagaaccccattttccggcaggtcaaaggggtggtggattcattcttttcttgaaaatttgaaatctttatgtggatgggtgtttggttttgatatacatttgctaaaaagtgggaaaagatttgaactttttttcaccaaatatagacatttcaagaattgaggaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="88267" stop="89192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88567" g_stop="88892" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E365135" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88567" e_stop="88892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAAACTCCCCATTTCTCCATGCTTTCAACTCTCTGAAAATCCTTTAAAGGGTGTCCAATTCTTCCATTTTCTTGAAATTTTGTTGACCCTTTGTGTTTTTATAGCCA-TTTTCTCTTTTTTTAATCCCCAACTCTTTGATCTTGCCGGGAAAAAGAACCCCATTTTCCGGCAGGTCAAAGGAGTGGTGGATTCATTCTTTTCTTGATAATTTGAAATCTTTATGTGGATGGGTGTTTGGTTTTGATATACATTTGCTAAAAAGTGGAAAAAGATTTGAAC-TTTTTT-ACCAAATATAGAGATTTCAAGAATTGAGGAAAAAT</genome_strand>
        <mrna_strand>GAGAAAAAAACTCCCCATTTCTCCATGCTTTCAACTCTCTGAAAATCCTTCAAAGGGTGTCCAATTCTTCCATTTTCTTGAAATTTTGTTGACCCTTTGTGTTTTTATAGCCATTTTTCTCTTTTTTTAATCCCCAACTCTTTGATCTTGCCGGGAAAAAGAACCCCATTTTCCGGCAGGTCAAAGGGGTGGTGGATTCATTCTTTTCTTGAAAATTTGAAATCTTTATGTGGATGGGTGTTTGGTTTTGATATACATTTGCTAAAAAGTGGGAAAAGATTTGAACTTTTTTTCACCAAATATAGACATTTCAAGAATTGAGGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463018" ref_strand="-" ref_description="SGN-E463018 [cPRO-13-I18]">
      <seq>gaacatcccagtcaagattaaaggatttcagaaacagatggagaagtggatgggcgcttgcgactgcattatcacaaaggctggaccaggtacaattgcagaagcactaatcagagggctgccaattattctcaacgactacattcccggacaagaaaagggaaacgttccatacgttgtggacaatggagctggtgttttcacacgaagccccaaggaaacatcccggattgttgcagagtggtttagcaccaaagaggatgaacgcaaaaccatatcagagaatgcacttaaacttgcacaacccgatgcagtttttgacatcgtgaaggacatccacgagctcgcatgccagagaggtcctctcgccaacattccttacgcgttcacgtcttcattttcaagcttaatttaaaccagatatatagattctgtttttttttcttttttactacaaggtctaagatttgttctagtaggatattatgtaaggtaggttcaatgatctcactctttagccataaacgcttggcgcgctcattgtaatctgtaaattatgaaaaaattcgatccttggttagtcggagaaaaagaaatttataacgagacgagaacgagggagctgtgataaaaatgcagaaattggatgaagtttcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="91625" stop="93261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91806" g_stop="91821" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91822" i_stop="91936" i_length="115">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91937" g_stop="91999" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="79" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92000" i_stop="92268" i_length="269">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92269" g_stop="92343" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="154" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92344" i_stop="92446" i_length="103">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92447" g_stop="92965" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="663" r_length="509" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E463018" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463018" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91806" e_stop="91821"/>
          <exon e_start="91937" e_stop="91999"/>
          <exon e_start="92269" e_stop="92343"/>
          <exon e_start="92447" e_stop="92965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATCCCAGTCAAGGTAAAGCAGAATTAGATTCTTGGAGTATGAATACGCCTTACAAAACTACGTTAACACCTGAGCTTTATTTGACAATCTAATTTTCTTTTGAATATTTTTTCCTCTTGCTATCTAGATTAAAGGATTTCAGAAACAGATGGAGAAGTGGATGGGCGCTTGCGACTGTATTATCACAAAGGTATATGTCAATGCACTCCTATTTTAGCATTGCTATGCAGGGGTGGATTACGGGTTCAGCTGAACTCGGTAGTCTTGGTCCGAACTCTGTATTTGTACTAAATATCCATTAAATATGTACAAATATTAATTTAGAACCCAATAATTTGGAAGGTACTAGAACTCCGAACCCATAAGCTTCAACTTTTGGCTCCGCCTTTGTTGCTGTGTATTCTTTTTTGTGCATTGTTCAAAATGTGGGACTAAATTTTCAGTTATTTTCACCTGTAGGCTGGACCAGGTACAATTGCAGAAGCACTAATCAGAGGGCTGCCAATTATTCTCAACGACTACATTCCCGGACAAGTTAGTGAAATCAAAACATTGATTATTCGACTGCTAGCTATCGTAGTATAGCTGCTGTTATGACCGTGTTTACTGATTTACATTTCCTTTATGTATTTCTCAGGAAAAGGGAAACGTTCCATACGTTGTGGACAATGGAGCTGGTGTTTTCACACGAAGCCCCAAGGAAACAGCCCGGATTGTTGCAGAGTGGTTTAGCACCAAAGAGGATGAGCGCAAAACTATATCAGAGAATGCACTTAAACTTGCACAACCCGATGCAGTTTTTGACATCGTGAAGGACATCCACGAGCTTGCATGCCAGAGAGGTCCTCTCGCCAACATTCCTTACGAGTTCACGTCTTCATTTTCAAGCTTAATTTAAGCCAGATACATAGATTCTGGTTGTTTTTTTTGTCTTTTTTACTACAAGGTCTAATATTTGTTCTAGTAGGATATTATGTAAGGTAGGTTCAATGATCTCA-TTTTTAGCCATAAAACGCTTGGCGCGCTCATTGTAATCTGTAGATTGTCTAGACAAATTCCGATCCTTGGTTAGTCGGAGAAAAAAAGAAATTCAAAACGAGACCAGAACGAGGGAGCTGTGATAAAAATGCAGAAATTGAATGAAGTTTCATATGTT</genome_strand>
        <mrna_strand>GAACATCCCAGTCAAG...................................................................................................................ATTAAAGGATTTCAGAAACAGATGGAGAAGTGGATGGGCGCTTGCGACTGCATTATCACAAAG.............................................................................................................................................................................................................................................................................GCTGGACCAGGTACAATTGCAGAAGCACTAATCAGAGGGCTGCCAATTATTCTCAACGACTACATTCCCGGACAA.......................................................................................................GAAAAGGGAAACGTTCCATACGTTGTGGACAATGGAGCTGGTGTTTTCACACGAAGCCCCAAGGAAACATCCCGGATTGTTGCAGAGTGGTTTAGCACCAAAGAGGATGAACGCAAAACCATATCAGAGAATGCACTTAAACTTGCACAACCCGATGCAGTTTTTGACATCGTGAAGGACATCCACGAGCTCGCATGCCAGAGAGGTCCTCTCGCCAACATTCCTTACGCGTTCACGTCTTCATTTTCAAGCTTAATTTAAACCAGATATATAGATTC----TGTTTTTTTT-TCTTTTTTACTACAAGGTCTAAGATTTGTTCTAGTAGGATATTATGTAAGGTAGGTTCAATGATCTCACTCTTTAGCCAT-AAACGCTTGGCGCGCTCATTGTAATCTGTAAATTAT-GA-AAAAATT-CGATCCTTGGTTAGTCGGAG--AAAAAGAAATTTATAACGAGACGAGAACGAGGGAGCTGTGATAAAAATGCAGAAATTGGATGAAGTTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430976" ref_strand="-" ref_description="SGN-E430976 [STM-54-P9]">
      <seq>ccagtcaagattaaaggatttcagaaacagatggagaagtggatgggcgcttgcgactgcattatcacaaaggctggaccaggtacaattgcagaagcactaatcagagggctgccaattattctcaacgactacattcccggacaagaaaagggaaacgttccatacgttgtggacaatggagctggtgttttcacacgaagccccaaggaaacatcccggattgttgcagagtggtttagcaccaaagaggatgaacgcaaaaccatatcagagaatgcacttaaacttgcacaacccgatgcagtttttgacatcgtgaaggacatccacgagctcgcatgccagagaggtcctctcgccaacattccttacgcgttcacgtcttcattttcaagcttaatttaaaccagatatatagattctgtttttttttcttttttactacaaggtctaagatttgttctagtaggatattatgtaaggtaggttcaatgatctcactctttagccataaacgcttggcgcgctcattgtaatctgtaaattatgaaaaaattcgatccttggttagtcggagaaaaagaaatttatagcgagaagagaacgagggagctgtgataaaaatgcagaaattggatgaagtttcatagaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="91629" stop="93261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91813" g_stop="91821" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91822" i_stop="91936" i_length="115">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91937" g_stop="91999" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="72" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92000" i_stop="92268" i_length="269">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92269" g_stop="92343" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="147" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92344" i_stop="92446" i_length="103">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92447" g_stop="92960" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="651" r_length="504" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E430976" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91813" e_stop="91821"/>
          <exon e_start="91937" e_stop="91999"/>
          <exon e_start="92269" e_stop="92343"/>
          <exon e_start="92447" e_stop="92960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCAAGGTAAAGCAGAATTAGATTCTTGGAGTATGAATACGCCTTACAAAACTACGTTAACACCTGAGCTTTATTTGACAATCTAATTTTCTTTTGAATATTTTTTCCTCTTGCTATCTAGATTAAAGGATTTCAGAAACAGATGGAGAAGTGGATGGGCGCTTGCGACTGTATTATCACAAAGGTATATGTCAATGCACTCCTATTTTAGCATTGCTATGCAGGGGTGGATTACGGGTTCAGCTGAACTCGGTAGTCTTGGTCCGAACTCTGTATTTGTACTAAATATCCATTAAATATGTACAAATATTAATTTAGAACCCAATAATTTGGAAGGTACTAGAACTCCGAACCCATAAGCTTCAACTTTTGGCTCCGCCTTTGTTGCTGTGTATTCTTTTTTGTGCATTGTTCAAAATGTGGGACTAAATTTTCAGTTATTTTCACCTGTAGGCTGGACCAGGTACAATTGCAGAAGCACTAATCAGAGGGCTGCCAATTATTCTCAACGACTACATTCCCGGACAAGTTAGTGAAATCAAAACATTGATTATTCGACTGCTAGCTATCGTAGTATAGCTGCTGTTATGACCGTGTTTACTGATTTACATTTCCTTTATGTATTTCTCAGGAAAAGGGAAACGTTCCATACGTTGTGGACAATGGAGCTGGTGTTTTCACACGAAGCCCCAAGGAAACAGCCCGGATTGTTGCAGAGTGGTTTAGCACCAAAGAGGATGAGCGCAAAACTATATCAGAGAATGCACTTAAACTTGCACAACCCGATGCAGTTTTTGACATCGTGAAGGACATCCACGAGCTTGCATGCCAGAGAGGTCCTCTCGCCAACATTCCTTACGAGTTCACGTCTTCATTTTCAAGCTTAATTTAAGCCAGATACATAGATTCTGGTTGTTTTTTTTGTCTTTTTTACTACAAGGTCTAATATTTGTTCTAGTAGGATATTATGTAAGGTAGGTTCAATGATCTCA-TTTTTAGCCATAAAACGCTTGGCGCGCTCATTGTAATCTGTAGATTGTCTAGACAAATTCCGATCCTTGGTTAGTCGGAGAAAAAAAGAAATTCAAAACGAGACCAGAACGAGGGAGCTGTGATAAAAATGCAGAAATTGAATGAAGTTTCAT</genome_strand>
        <mrna_strand>CCAGTCAAG...................................................................................................................ATTAAAGGATTTCAGAAACAGATGGAGAAGTGGATGGGCGCTTGCGACTGCATTATCACAAAG.............................................................................................................................................................................................................................................................................GCTGGACCAGGTACAATTGCAGAAGCACTAATCAGAGGGCTGCCAATTATTCTCAACGACTACATTCCCGGACAA.......................................................................................................GAAAAGGGAAACGTTCCATACGTTGTGGACAATGGAGCTGGTGTTTTCACACGAAGCCCCAAGGAAACATCCCGGATTGTTGCAGAGTGGTTTAGCACCAAAGAGGATGAACGCAAAACCATATCAGAGAATGCACTTAAACTTGCACAACCCGATGCAGTTTTTGACATCGTGAAGGACATCCACGAGCTCGCATGCCAGAGAGGTCCTCTCGCCAACATTCCTTACGCGTTCACGTCTTCATTTTCAAGCTTAATTTAAACCAGATATATAGATTC----TGTTTTTTTT-TCTTTTTTACTACAAGGTCTAAGATTTGTTCTAGTAGGATATTATGTAAGGTAGGTTCAATGATCTCACTCTTTAGCCAT-AAACGCTTGGCGCGCTCATTGTAATCTGTAAATTAT-GA-AAAAATT-CGATCCTTGGTTAGTCGGAG--AAAAAGAAATTTATAGCGAGAAGAGAACGAGGGAGCTGTGATAAAAATGCAGAAATTGGATGAAGTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425555" ref_strand="+" ref_description="SGN-E425555 [STM-45-A22]">
      <seq>aaatctaaccggttttcagtctctaaattgccgggcaccggagctggagctcttcaccgttcaatttctccatcaaatcaaacttgttaattgcagattcaaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacgacttcttttgatgctcttgtaagagcagtggatactccggaagttaagaatgaattgttcaagaagggttacaccgatattctgattcaaatggggcgaggatcgtacattcccacaagggctactgctgaaaatggttctccagctctggactacttcacattttcctcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccattaatagtggtagtcaatgaggatctaatggacaaccatcaaagtgagctcgcagaagaactggctgagagaaagcatttgtattgtgctcgtccacaaacgttatacaagactatctcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctaaacttatttatagatatttaggtttcccagaggaatgattaaacttattgttctgtagttgacatgaagtgaagctcaattgtatgtgatttatagatcataatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94172" stop="98068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94472" g_stop="94555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.726"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="94995" i_length="440">
            <donor d_prob="1.000" d_score="0.59"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94996" g_stop="95226" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="310" r_length="231" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="410" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97768" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="738" r_length="328" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E425555" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94472" e_stop="94555"/>
          <exon e_start="94996" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTACCGGTTTTCAGTCTCTCAATTGCCGGCCACC-GAGCTCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTA</genome_strand>
        <mrna_strand>AAATCTAACCGGTTTTCAGTCTCTAAATTGCCGGGCACCGGAGCT-GGAGCTC-TTCACCGT-TCAATT-TCTCCATC--AAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTTAATTGCAGATTCAAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACGACTTCTTTTGATGCTCTTGTAAGAGCAGTGGATACTCCGGAAGTTAAGAATGAATTGTTCAAGAAGGGTTACACCGATATTCTGATTCAAATGGGGCGAGGATCGTACATTCCCACAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTGCTGAAAATGGTTCTCCAGCTCTGGACTACTTCACATTTTCCTCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCATTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGTGAGCTCGCAGAAGAACTGGCTGAGAGAAAGCATTTGTATTGTGCTCGTCCACAAACGTTATACAAGACTATCTCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTAAACTTATTTATAGATATTTAGGTTTCCCAGAGGAATGATTAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGCTCAATTGTATGTGATTTATAGATCATAATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454899" ref_strand="+" ref_description="SGN-E454899 [cSTS-24-P15]">
      <seq>aaatctaaccggttttcagtctctaaattgccgggcaccggagctggagctcttcaccgttcaatttctccatcaaatcaaacttgttaattgcagattcaaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacgacttcttttgatgctcttgtaagagcagtggatactccggaagttaagaatgaattgttcaagaagggttacaccgatattctgattcaaatggggcgaggatcgtacattcccacaagggctactgctgaaaatggttctccagctctggactacttcacattttcctcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccattaatagtggtagtcaatgaggatctaatggacaaccatcaaagtgagctcgcagaagaactggctgagagaaagcatttgtattgtgctcgtccacaaacgttatacaagactatctcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctaaacttatttatagatatttangtttcccagaggaatgattaaacttattgttctgtagttgacatgaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94172" stop="98031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94472" g_stop="94555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.726"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="94995" i_length="440">
            <donor d_prob="1.000" d_score="0.59"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94996" g_stop="95226" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="310" r_length="231" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="410" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="701" r_length="291" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E454899" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94472" e_stop="94555"/>
          <exon e_start="94996" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTACCGGTTTTCAGTCTCTCAATTGCCGGCCACC-GAGCTCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGA</genome_strand>
        <mrna_strand>AAATCTAACCGGTTTTCAGTCTCTAAATTGCCGGGCACCGGAGCT-GGAGCTC-TTCACCGT-TCAATT-TCTCCATC--AAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTTAATTGCAGATTCAAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACGACTTCTTTTGATGCTCTTGTAAGAGCAGTGGATACTCCGGAAGTTAAGAATGAATTGTTCAAGAAGGGTTACACCGATATTCTGATTCAAATGGGGCGAGGATCGTACATTCCCACAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTGCTGAAAATGGTTCTCCAGCTCTGGACTACTTCACATTTTCCTCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCATTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGTGAGCTCGCAGAAGAACTGGCTGAGAGAAAGCATTTGTATTGTGCTCGTCCACAAACGTTATACAAGACTATCTCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTAAACTTATTTATAGATATTTANGTTTCCCAGAGGAATGATTAAACTTATTGTTCTGTAGTTGACATGAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336505" ref_strand="+" ref_description="SGN-E336505 [cTOE-4-F20]">
      <seq>tctcttctcactcgtcgtctcagttcgctccaccggaaaagatttgaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacaacttcttttgatgctcttgtaagagcggtggataccccggaagtgaagaaagaactgttcaagaaaggttacactgatattcttattcaaatggggcgaggattgtatatccccacaaagtcgactgctgaaaatggttctccagctctggattacttcacatattcatcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccgttaatagtggtagtcaatgaggatctaatggacaaccatcaaagcgagctcgcagaagaactggctgagagaaaacatttgtattgtgctcgtccacaaacattatacaagactatatcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctgaacttatatatagatatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94215" stop="97980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94515" g_stop="94555" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95013" g_stop="95226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="255" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="355" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97680" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="595" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E336505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94515" e_stop="94555"/>
          <exon e_start="95013" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAG</genome_strand>
        <mrna_strand>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203513" ref_strand="+" ref_description="SGN-E203513 [cLEC-15-E15]">
      <seq>cttctcactcgtcgtctcagttcgctccaccggaaaagatttgaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacaacttcttttgatgctcttgtaagagcggtggataccccggaagtgaagaaagaactgttcaagaaaggttacactgatattcttattcaaatggggcgaggattgtatatccccacaaagtcgactgctgaaaatggttctccagctctggattacttcacatattcatcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaagtaattcatggttgacaatgttcttagctttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94218" stop="96868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94518" g_stop="94555" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95013" g_stop="95226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="252" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96568" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="386" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E203513" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94518" e_stop="94555"/>
          <exon e_start="95013" e_stop="95226"/>
          <exon e_start="96435" e_stop="96568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATA</genome_strand>
        <mrna_strand>CTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAAGTAATTCATGGTTGACAATGTTCTTAGCTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285561" ref_strand="+" ref_description="SGN-E285561 [cLES-10-P6]">
      <seq>agttcgctccaccggaaaagatttgaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacaacttcttttgatgctcttgtaagagctttggataccccggaagtgaagaaagaactgttcaagaaaggttacactgatattcttattcaaatggggcgaggattgtatatccccacaaagtcgactgctgaaaatggttctccagctctggattacttcacatattcatcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccggtaatagtggtagtcaatgaggatctaatggacaaccatcaaagcgagctcgcagaagaactggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94236" stop="97848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94536" g_stop="94555" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95013" g_stop="95226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="234" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="334" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97548" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="442" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E285561" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94536" e_stop="94555"/>
          <exon e_start="95013" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTG</genome_strand>
        <mrna_strand>AGTTCGCTCCACCGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCTTTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGGTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402675" ref_strand="+" ref_description="SGN-E402675 [PPC-8-K14]">
      <seq>gctctaaattgccgggcaccggagctggagctcttcaccgttcaatttctccatcaaatcaaactattcaaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacgacttcttttgatgctcttgtaagagcagtggatactccggaagttaagaatgaattgttcaagaagggttacaccgatattctgattcaaatggggcgaggatcgtacattcccacaagggctactgctgaaaatggttctccagctctggactacttcacattttcctcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccattaatagtggtagtcaatgaggatctaatggacaaccatcaaagtgagctcgcagaagaactggctgagagaaagcatttgtattgtgctcgtccacaaacgttatacaagactatctcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctaaacttatttatagatatttaggtttcccagaggaatgattaaacttattgttctgtagttgacatgaagtgaagctcaattgtatgtgatttatagatcataatctttatcctcaaagggtctgttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94713" stop="98076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95013" g_stop="95226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="279" r_length="214" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="379" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97441" g_stop="97791" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="730" r_length="351" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E402675" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95013" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTT</genome_strand>
        <mrna_strand>ATTCAAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACGACTTCTTTTGATGCTCTTGTAAGAGCAGTGGATACTCCGGAAGTTAAGAATGAATTGTTCAAGAAGGGTTACACCGATATTCTGATTCAAATGGGGCGAGGATCGTACATTCCCACAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTGCTGAAAATGGTTCTCCAGCTCTGGACTACTTCACATTTTCCTCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCATTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGTGAGCTCGCAGAAGAACTGGCTGAGAGAAAGCATTTGTATTGTGCTCGTCCACAAACGTTATACAAGACTATCTCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTAAACTTATTTATAGATATTTAGGTTTCCCAGAGGAATGATTAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGCTCAATTGTATGTGATTTATAGATCATAATCTTTATCCTCAAAGGGTCTGTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335759" ref_strand="+" ref_description="SGN-E335759 [cTOE-19-E5]">
      <seq>aattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacaacttcttttgatgctcttgtaagaggcggtggatacccggaagtgaagaaagaactgttcaagaaaggttacactgatattcttattcaaatggggcgaggattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94739" stop="95513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95039" g_stop="95213" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E335759" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95039" e_stop="95213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGA-GCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTA</genome_strand>
        <mrna_strand>AATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGGCGGTGGATA-CCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425556" ref_strand="-" ref_description="SGN-E425556 [STM-45-A22]">
      <seq>gaaaatggttttccagctctggactacttcacattttcctcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacatttcgactgggcaaaccattaatagtggtagtcaatgaggatttaatggacaaccatcaaagtgagctcgcagaagaactggctgagagaaagcatttgtattgtgctcgtccacaaacgttatacaagactatttcggatatggatccagggttttttgttccatatcaaccaggtgacgcgaaaccagttgctaaacttatttatagatatttaggtttcccagaggaatgattaaacttattgttttgtagttgacatgaagtgaagctcaattgtatgtgatttatagatcataatctttatcctcaaaggttctgttatttgtttgtaaagatattttatggtttggggaaaaaaaaaaaaaaaaaaaaaaaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="96144" stop="98123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96444" g_stop="96534" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97441" g_stop="97822" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="470" r_length="379" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="497"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E425556" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425556" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96444" e_stop="96534"/>
          <exon e_start="97441" e_stop="97822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTTGTTTCTAATGATATTTGGTGTGTTTGAGGAA</genome_strand>
        <mrna_strand>GAAAATGGTTTTCCAGCTCTGGACTACTTCACATTTTCCTCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTTCGACTGGGCAAACCATTAATAGTGGTAGTCAATGAGGATTTAATGGACAACCATCAAAGTGAGCTCGCAGAAGAACTGGCTGAGAGAAAGCATTTGTATTGTGCTCGTCCACAAACGTTATACAAGACTATTTCGGATATGGATCCAGGGTTTTTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTAAACTTATTTATAGATATTTAGGTTTCCCAGAGGAATGATTAAACTTATTGTTTTGTAGTTGACATGAAGTGAAGCTCAATTGTATGTGATTTATAGATCATAATCTTTATCCTCAAAGGTTCTG-T-TATTTGTTTGTAAAGATATTTTATG-GTTTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538342" ref_strand="+" ref_description="SGN-E538342 [TUS-57-H14]">
      <seq>attaaacaattctatttcaataataataataataataatactaacaataccaaaaaataaacaactttccattattttttcactttaattccctacctagcttttgattaatttcaattcttcaagttactttttctttatcacttcatgttattcaaatacaaattcatgaatttaagttatatacgttgacagtttaaataaagacggacactacgaggtacagtgaatcgttaactggtttcgttggaatattgttacttgagagggaggcaatgttgcttcatctcttcttttcattgttcgtgttttttactttgatagacaatgggaatgctggtgtaacgagttcatttgttcgtaaagagtttccagctgttgatattcctcttgataatgaagtgtttgctgttcctaaaggttacaatgctccacaacaagtgcatataacacagggtgattatgaaggaaaatctgtaatagtctcatgggttacaccagataaaccggggtctagtgaagtacgttacggattatctaagggaaaatatgattttacagctaaaggatcattcacaaactacacattttacacctacaagtctggatatatacacaagtgctttcttaacggacttcagtatgacacaaagtattactatgaaatcggaaatggtgactctgctcggaacttttggtttgaaactcctccaaaggntgatccagatgcttcatacacatttggtatcataggtgatctcggancaaacatatattctctttcgactcttcagcattacatgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="99409" stop="102070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99709" g_stop="99934" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99935" i_stop="100195" i_length="261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100196" g_stop="100409" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="440" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100410" i_stop="101111" i_length="702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101112" g_stop="101312" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="641" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101313" i_stop="101453" i_length="141">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101454" g_stop="101565" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="753" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101566" i_stop="101716" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101717" g_stop="101770" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="807" r_length="54" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E538342" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99709" e_stop="99934"/>
          <exon e_start="100196" e_stop="100409"/>
          <exon e_start="101112" e_stop="101312"/>
          <exon e_start="101454" e_stop="101565"/>
          <exon e_start="101717" e_stop="101770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAGGTGAAACTCCCTTTCCATGTTTCAGTTTGTTTGTCTTACTTCCCAATTTAGTCTGCTCGATAAGGCATGAGTTCTAGTATCATGAGTGTTTCTTCATAGGAACATCCGCGAATTTGATCAATTATGGTTTGTCATTTGTTAACAAACATAGATATATATGTTCATCTAAGCATATACTTTGATTTATTTTCTTCTTTAGCATAATGTTTGCCTTCAAAATTTTCCGTTTTTAACGACTATATTGGTTTGTTCTGAATGCAGTGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAAGTAAGTTACCTTTACCTTTTGTTCTGTTTTGATCTTCTACAACAATATATTGCGAACTTGATATAATATGTTCAATTCGAGTATAGCATGATTTATATAACTCAAGTGTGAAATTGCATACTCAGACTACAATGTTGTGTATGATCATTGTTGTCTTGACCTAGGTTCAACTGTTAAGGTATTGTCTGCTTTGGCCCGACCCTTATGAGTTATGAGTCGACTCTAGGATTTTGGGCCTTCAGGTTTTGTGCTTTTAACCAAAAGATGCCTCAACGGTTGAATCCTGAACTCGTTTTATATGATCATAACGATATGGGATTTGCCTAAGGCAAGTGTTGTGGAAGATCGTGGGGTAACTAGCACACAATCACACCATCAAAGCAAATACAGAAGAGAATGGTAACACGAGGATTTAATGAGGTTTGGCAAAGCCGAGTCCTCAAGGAATTTGACAACAATCCCCCTTTTCGAGTTCAACCTCTAGTACTTCTCTTCTCGTGTGCTGTTACAACTGTGTAGGTTGATGATGAAATACATTGTAATATCGACTACTGTACTCATAATCTTCGTGTGCAATGTTCTGTCTGCTGTGGATAAAATGCAGTTACTTATTATGCTACTAGTTCTTTCATGAACATGTTTTTTCGAGATAACAATGTGTTTCGTGTCATCTGAAATGCTAATAACTTCATTCTATTATAGGTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAGGTAATAAAAACTCTTCGTTTTATAGTTTCAAGGAAAGAATCGCAATGTCATCTCTTTGTTTAAGTGTCATATACAACATGCTATTGTATTTGCATAAAGTTCTGTCTAGTTTGATCAGTTATGTTTTTACCTCTGTTATAGTATGACACAAAGTATTACTATGAAATCGGAAATGGTGACTCTGCTCGGAACTTTTGGTTTGAAACTCCTCCAAAGGTTGATCCAGATGCTTCATACACATTTGGTATCATAGGTGAGTAGTTTATATATTTCATTTCCCATTTGTCTGAATTATACTTTACAACATACTGACGTTTGTGCACGTCTGAACTCTTATCGTGTATTTTTCCACTATTGGTAGTTCAAATGTATCATTTTTAGTGTTTCTGCGTCATTCTTTCCAGGTGATCTCGGA-CAAACATATAATTCTCTTTCGACTCTTCAGCATTACATGAGTA</genome_strand>
        <mrna_strand>ATTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAG.....................................................................................................................................................................................................................................................................TGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAG.............................................................................................................................................TATGACACAAAGTATTACTATGAAATCGGAAATGGTGACTCTGCTCGGAACTTTTGGTTTGAAACTCCTCCAAAGGNTGATCCAGATGCTTCATACACATTTGGTATCATAG.......................................................................................................................................................GTGATCTCGGANCAAACATAT-ATTCTCTTTCGACTCTTCAGCATTACATGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538349" ref_strand="+" ref_description="SGN-E538349 [TUS-57-H18]">
      <seq>attaaacaattctatttcaataaaaataataataataatacttacaataccaaaaaataaacaactttccattatttattcactttaattccctacctagcttttgattaatttcaattcttcaagttactttttctttatcacttcatgttattcaaatacaaattcatgaatttaagttatatacgttgacagtttaaataaagacggacactacgaggtacagtgaatcgttaactggtttcgttggaatattgttacttgagagggaggcaatgttgcttcatctcttcttttcattgttcgtgttttttacttagatagacaatggaaatgctggtgtaacgagttcatttgttcgtaaagagattccagctgttgatattcctcttgataatgaagtgtttgctgttcctaaaggttacaatgctccacaacaagtgcatataacacagggtgattatgaaggaaaatctgtaataggctcatggggtacaccagataaaccggggtctagtgaagtacgttaccgatttactaagggaaaatatgatttttacaggttaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="99409" stop="101540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99709" g_stop="99934" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99935" i_stop="100195" i_length="261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100196" g_stop="100409" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="440" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100410" i_stop="101111" i_length="702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101112" g_stop="101240" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E538349" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99709" e_stop="99934"/>
          <exon e_start="100196" e_stop="100409"/>
          <exon e_start="101112" e_stop="101240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAGGTGAAACTCCCTTTCCATGTTTCAGTTTGTTTGTCTTACTTCCCAATTTAGTCTGCTCGATAAGGCATGAGTTCTAGTATCATGAGTGTTTCTTCATAGGAACATCCGCGAATTTGATCAATTATGGTTTGTCATTTGTTAACAAACATAGATATATATGTTCATCTAAGCATATACTTTGATTTATTTTCTTCTTTAGCATAATGTTTGCCTTCAAAATTTTCCGTTTTTAACGACTATATTGGTTTGTTCTGAATGCAGTGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAAGTAAGTTACCTTTACCTTTTGTTCTGTTTTGATCTTCTACAACAATATATTGCGAACTTGATATAATATGTTCAATTCGAGTATAGCATGATTTATATAACTCAAGTGTGAAATTGCATACTCAGACTACAATGTTGTGTATGATCATTGTTGTCTTGACCTAGGTTCAACTGTTAAGGTATTGTCTGCTTTGGCCCGACCCTTATGAGTTATGAGTCGACTCTAGGATTTTGGGCCTTCAGGTTTTGTGCTTTTAACCAAAAGATGCCTCAACGGTTGAATCCTGAACTCGTTTTATATGATCATAACGATATGGGATTTGCCTAAGGCAAGTGTTGTGGAAGATCGTGGGGTAACTAGCACACAATCACACCATCAAAGCAAATACAGAAGAGAATGGTAACACGAGGATTTAATGAGGTTTGGCAAAGCCGAGTCCTCAAGGAATTTGACAACAATCCCCCTTTTCGAGTTCAACCTCTAGTACTTCTCTTCTCGTGTGCTGTTACAACTGTGTAGGTTGATGATGAAATACATTGTAATATCGACTACTGTACTCATAATCTTCGTGTGCAATGTTCTGTCTGCTGTGGATAAAATGCAGTTACTTATTATGCTACTAGTTCTTTCATGAACATGTTTTTTCGAGATAACAATGTGTTTCGTGTCATCTGAAATGCTAATAACTTCATTCTATTATAGGTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGA-TTTTACAGCTAAAGGA</genome_strand>
        <mrna_strand>ATTAAACAATTCTATTTCAATAAAAATAATAATAATAATACTTACAATACCAAAAAATAAACAACTTTCCATTATTTATTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAG.....................................................................................................................................................................................................................................................................TGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTAGATAGACAATGGAAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGATTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGGCTCATGGGGTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACCGATTTACTAAGGGAAAATATGATTTTTACAGGTTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268238" ref_strand="+" ref_description="SGN-E268238 [cLEM-3-E8]">
      <seq>ttaaacaattctatttcaataataataataataataatactaacaataccaaaaaataaacaactttccattattttttcactttaattccctacctagcttttgattaatttcaattcttcaagttactttttctttatcacttcatgttattcaaatacaaattcatgaatttaagttatatacgttgacagtttaaataaagacggacactacgaggtacagtgaatcgttaactggtttcgttggaatattgttacttgagagggaggcaatgttgcttcatctcttcttttcattgttcgtgttttttactttgatagacaatgggaatgctggtgtaacgagttcatttgttcgtaaagagtttccagctgttgatattcctcttgataatgaagtgtttgctgttcctaaaggttacaatgctccacaacaagtgcatataacacagggtgattatgaaggaaaatctgtaatagtctcatgggttacaccagataaaccggggtctagtgaagtacgttacggattatctaagggaaaatatgattttacagctaaaggatcattcacaaactacacattttacacctacaagtctggatatatacacaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="99410" stop="101594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99710" g_stop="99934" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99935" i_stop="100195" i_length="261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100196" g_stop="100409" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="439" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100410" i_stop="101111" i_length="702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101112" g_stop="101294" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="622" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E268238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99710" e_stop="99934"/>
          <exon e_start="100196" e_stop="100409"/>
          <exon e_start="101112" e_stop="101294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAGGTGAAACTCCCTTTCCATGTTTCAGTTTGTTTGTCTTACTTCCCAATTTAGTCTGCTCGATAAGGCATGAGTTCTAGTATCATGAGTGTTTCTTCATAGGAACATCCGCGAATTTGATCAATTATGGTTTGTCATTTGTTAACAAACATAGATATATATGTTCATCTAAGCATATACTTTGATTTATTTTCTTCTTTAGCATAATGTTTGCCTTCAAAATTTTCCGTTTTTAACGACTATATTGGTTTGTTCTGAATGCAGTGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAAGTAAGTTACCTTTACCTTTTGTTCTGTTTTGATCTTCTACAACAATATATTGCGAACTTGATATAATATGTTCAATTCGAGTATAGCATGATTTATATAACTCAAGTGTGAAATTGCATACTCAGACTACAATGTTGTGTATGATCATTGTTGTCTTGACCTAGGTTCAACTGTTAAGGTATTGTCTGCTTTGGCCCGACCCTTATGAGTTATGAGTCGACTCTAGGATTTTGGGCCTTCAGGTTTTGTGCTTTTAACCAAAAGATGCCTCAACGGTTGAATCCTGAACTCGTTTTATATGATCATAACGATATGGGATTTGCCTAAGGCAAGTGTTGTGGAAGATCGTGGGGTAACTAGCACACAATCACACCATCAAAGCAAATACAGAAGAGAATGGTAACACGAGGATTTAATGAGGTTTGGCAAAGCCGAGTCCTCAAGGAATTTGACAACAATCCCCCTTTTCGAGTTCAACCTCTAGTACTTCTCTTCTCGTGTGCTGTTACAACTGTGTAGGTTGATGATGAAATACATTGTAATATCGACTACTGTACTCATAATCTTCGTGTGCAATGTTCTGTCTGCTGTGGATAAAATGCAGTTACTTATTATGCTACTAGTTCTTTCATGAACATGTTTTTTCGAGATAACAATGTGTTTCGTGTCATCTGAAATGCTAATAACTTCATTCTATTATAGGTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGC</genome_strand>
        <mrna_strand>TTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAG.....................................................................................................................................................................................................................................................................TGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300919" ref_strand="+" ref_description="SGN-E300919 [cLEW-8-A9]">
      <seq>tctcttcttttcattgatcgtgttttttactttgatagacaatgggaatgctggcgtaacgagttcatttgttcgtaaagagtttccagctgttgatattcctcttgataatgaagcgtttgctgttcctaaaggttacaatgctccacaacaagtgcatataacacagggtgattatgaaggaaaatctgtgatagtctcatgggttacaccagataaaccggggtctagtgaagtacgttacggattatctaagggaaaatatgattctacagctaaaggatcattcacaaactacacattttacacctacaagtctggatatatacacaagtgctttcttaacggacttcagtatgacacaaagtattactatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="99956" stop="101779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100256" g_stop="100409" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100410" i_stop="101111" i_length="702">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101112" g_stop="101312" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="355" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101313" i_stop="101453" i_length="141">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101454" g_stop="101479" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="381" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E300919" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100256" e_stop="100409"/>
          <exon e_start="101112" e_stop="101312"/>
          <exon e_start="101454" e_stop="101479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAAGTAAGTTACCTTTACCTTTTGTTCTGTTTTGATCTTCTACAACAATATATTGCGAACTTGATATAATATGTTCAATTCGAGTATAGCATGATTTATATAACTCAAGTGTGAAATTGCATACTCAGACTACAATGTTGTGTATGATCATTGTTGTCTTGACCTAGGTTCAACTGTTAAGGTATTGTCTGCTTTGGCCCGACCCTTATGAGTTATGAGTCGACTCTAGGATTTTGGGCCTTCAGGTTTTGTGCTTTTAACCAAAAGATGCCTCAACGGTTGAATCCTGAACTCGTTTTATATGATCATAACGATATGGGATTTGCCTAAGGCAAGTGTTGTGGAAGATCGTGGGGTAACTAGCACACAATCACACCATCAAAGCAAATACAGAAGAGAATGGTAACACGAGGATTTAATGAGGTTTGGCAAAGCCGAGTCCTCAAGGAATTTGACAACAATCCCCCTTTTCGAGTTCAACCTCTAGTACTTCTCTTCTCGTGTGCTGTTACAACTGTGTAGGTTGATGATGAAATACATTGTAATATCGACTACTGTACTCATAATCTTCGTGTGCAATGTTCTGTCTGCTGTGGATAAAATGCAGTTACTTATTATGCTACTAGTTCTTTCATGAACATGTTTTTTCGAGATAACAATGTGTTTCGTGTCATCTGAAATGCTAATAACTTCATTCTATTATAGGTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAGGTAATAAAAACTCTTCGTTTTATAGTTTCAAGGAAAGAATCGCAATGTCATCTCTTTGTTTAAGTGTCATATACAACATGCTATTGTATTTGCATAAAGTTCTGTCTAGTTTGATCAGTTATGTTTTTACCTCTGTTATAGTATGACACAAAGTATTACTATGAAAT</genome_strand>
        <mrna_strand>TCTCTTCTTTTCATTGATCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGCGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGCGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTGATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTCTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAG.............................................................................................................................................TATGACACAAAGTATTACTATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265648" ref_strand="+" ref_description="SGN-E265648 [cLEI-14-P11]">
      <seq>cgttacggattatctaagggaaaatatgattttacagctaaaggatcattcacaaactacacattttacacctacaagtctggatatatacacaagtgctttcttaacggacttcagtatgacacaaagtattactatgaaatcggaaatggtgactctgctcggaacttttggtttgaaactcctccaaaggttgatccagatgcttcatacacatttggtatcataggtgatctcggacaaacatataattctctttcgactcttcagcattacatgagtagtggagctaagagtgttttgtttgtgggagatctatcttacgcggacagatataagtatcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="100896" stop="102136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101196" g_stop="101312" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101313" i_stop="101453" i_length="141">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101454" g_stop="101565" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="229" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101566" i_stop="101716" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101717" g_stop="101836" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="349" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E265648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101196" e_stop="101312"/>
          <exon e_start="101454" e_stop="101565"/>
          <exon e_start="101717" e_stop="101836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAGGTAATAAAAACTCTTCGTTTTATAGTTTCAAGGAAAGAATCGCAATGTCATCTCTTTGTTTAAGTGTCATATACAACATGCTATTGTATTTGCATAAAGTTCTGTCTAGTTTGATCAGTTATGTTTTTACCTCTGTTATAGTATGACACAAAGTATTACTATGAAATCGGAAATGGTGACTCTGCTCGGAACTTTTGGTTTGAAACTCCTCCAAAGGTTGATCCAGATGCTTCATACACATTTGGTATCATAGGTGAGTAGTTTATATATTTCATTTCCCATTTGTCTGAATTATACTTTACAACATACTGACGTTTGTGCACGTCTGAACTCTTATCGTGTATTTTTCCACTATTGGTAGTTCAAATGTATCATTTTTAGTGTTTCTGCGTCATTCTTTCCAGGTGATCTCGGACAAACATATAATTCTCTTTCGACTCTTCAGCATTACATGAGTAGTGGAGCTAAGAGTGTTTTGTTTGTGGGAGATCTATCTTACGCGGACAGATATAAGTATCATGATG</genome_strand>
        <mrna_strand>CGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAG.............................................................................................................................................TATGACACAAAGTATTACTATGAAATCGGAAATGGTGACTCTGCTCGGAACTTTTGGTTTGAAACTCCTCCAAAGGTTGATCCAGATGCTTCATACACATTTGGTATCATAG.......................................................................................................................................................GTGATCTCGGACAAACATATAATTCTCTTTCGACTCTTCAGCATTACATGAGTAGTGGAGCTAAGAGTGTTTTGTTTGTGGGAGATCTATCTTACGCGGACAGATATAAGTATCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268344" ref_strand="+" ref_description="SGN-E268344 [cLEI-13-K1]">
      <seq>ggggacgctttgttgagccaagcacagcatatcaaccgtggatttggaataccgggaatcatgagatagaatatatgccatatatgggagaagtaactatgttcaagtcgtatctgtacagatatccgaccccatatcaagcttcaaacagcactagtccgctttggtattccatcaggagggcgtctgctcacataattgtgctatcaacctactctcctttcgtaaaatatacaccacaatggaagtggctgagagaggaattcaaaaatattgacagagagaaaactccttggcttatagttcttatgcatgttcctatctacaacagtaatgtagctcatttcatggagggagaaagtatgagatccgtcttcgaagcatggtttatcgaacacaaagttgatgtgatctttgctggtcatgtccacgcctacgaaagatcatatcgcatatcaaatatacactttaacatctcgagtggtgatccctatcctgtacctgatgaaacagctccagtttacataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="101558" stop="103428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101858" g_stop="101943" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101944" i_stop="102058" i_length="115">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102059" g_stop="102197" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="225" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102198" i_stop="102585" i_length="388">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102586" g_stop="102806" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="446" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102807" i_stop="103045" i_length="239">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.660" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103046" g_stop="103128" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="529" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E268344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101858" e_stop="101943"/>
          <exon e_start="102059" e_stop="102197"/>
          <exon e_start="102586" e_stop="102806"/>
          <exon e_start="103046" e_stop="103128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACGCTTTGTTGAGCCAAGCACAGCATATCAACCGTGGATTTGGAATACCGGGAATCATGAGATAGAATATATGCCATATATGGTGAATTCCTGCAACACAGTTCAACTTCATATGTTTAACACAGGTGTTGCTAAATGCTATATGCAGAATTATAGCAATGTTTTAAAAAATCGACTGTTTTTCTTATTTTGAACAGGGAGAAGTAACTATGTTCAAGTCGTATCTGTACAGATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCGGTAATTTATCCGTTCCTGTTTCATGATTCTTGTTTGTTTCTGTTGTTAGCTGTTTTTACCTTGTCAATCTTGAGAATATAATCAAGTAAATGAAAACGCGTTCTCCCTAAACGATTTAACCTCTGAAATGAGATGGTCACACACTTCAATATGGAATCAGACTACACCACTCATTATTAGAAAGAATTTTTTTCCACGTACTTTGTCCACGAGTGAAGAAAGAATAGGCTTCTTCATGTTTAGAATAAAGTAATCGTTCTTGATGTTCTTAAACGCGAAGCAACAACCTTAAGGCCCTTATTTCAATGTTTATAGACATAACGAGAATTGTTGTGAAGTAAGTATTTGTTCACATAGGTACTTAGTCTGTATGTTTTCTATAATGCAGTAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCAGTAAGTCACTTCATTTCATCCTACTGGTTTTCCAACTCGTCCGAATACAAAGAAAAAAAAGAGAACAAACATGTGATACTCCTGTTTCAATTTGTTTATCTAGTTTTGAAACGGACTAAAAAGGGAAGTAAGACGAACAAAATGAAACGGAGGGACTGAGGGAGTATGTATCTTAGTAGGAGGGCTCATTTCCTTCTTCTGAAGTTGACAATGCTAAAAAGTTTCTTTCTCTTTTCCAGTATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAAC</genome_strand>
        <mrna_strand>GGGGACGCTTTGTTGAGCCAAGCACAGCATATCAACCGTGGATTTGGAATACCGGGAATCATGAGATAGAATATATGCCATATATG...................................................................................................................GGAGAAGTAACTATGTTCAAGTCGTATCTGTACAGATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCG....................................................................................................................................................................................................................................................................................................................................................................................................TAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCA...............................................................................................................................................................................................................................................TATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370147" ref_strand="+" ref_description="SGN-E370147 [TUS-28-A10]">
      <seq>atatccgaccccatatcaagcttcaaacagcactagtccgctttggtattccatcaggagggcgtctgctcacataattgtgctatcaacctactctcctttcgtaaaatatacaccacaatggaagtggctgagagaggaattcaaaaatattgacagagagaaaactccttggcttatagttcttatgcatgttcctatctacaacagtaatgtagctcatttcatggagggagaaagtatgagatccgtcttcgaagcatggtttatcgaacacaaagttgatgtgatctttgctggtcatgtccacgcctacgaaagatcatatcgcatatcaaatatacactttaacatctcgagtggtgatccctatcctgtacctgatgaaacagctccagtttacataactgttggtgatggaggaaataaagaaggtcttgctgcaagatttagagatcctcaaccagattactcagctttccgcgaatccagttatggtcattctacactagagattaagaacagaacacatgcattctaccattggaacagaaatgacgatggaaagaaagttaaaatcgactcattcgtgttacacaatctgtactggggacagaatcatcaccagagaaagtcgaaacaaaatcgtctccgttcactcattttaaacagagcttcaactgcacaactgtgagaacatatttctgcaacttactctcaaattagctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="101794" stop="104352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102094" g_stop="102197" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102198" i_stop="102585" i_length="388">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102586" g_stop="102806" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="325" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102807" i_stop="103045" i_length="239">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.660" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103046" g_stop="103167" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="447" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103168" i_stop="103595" i_length="428">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103596" g_stop="103757" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="609" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103930" g_stop="104052" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="732" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E370147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102094" e_stop="102197"/>
          <exon e_start="102586" e_stop="102806"/>
          <exon e_start="103046" e_stop="103167"/>
          <exon e_start="103596" e_stop="103757"/>
          <exon e_start="103930" e_stop="104052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCGGTAATTTATCCGTTCCTGTTTCATGATTCTTGTTTGTTTCTGTTGTTAGCTGTTTTTACCTTGTCAATCTTGAGAATATAATCAAGTAAATGAAAACGCGTTCTCCCTAAACGATTTAACCTCTGAAATGAGATGGTCACACACTTCAATATGGAATCAGACTACACCACTCATTATTAGAAAGAATTTTTTTCCACGTACTTTGTCCACGAGTGAAGAAAGAATAGGCTTCTTCATGTTTAGAATAAAGTAATCGTTCTTGATGTTCTTAAACGCGAAGCAACAACCTTAAGGCCCTTATTTCAATGTTTATAGACATAACGAGAATTGTTGTGAAGTAAGTATTTGTTCACATAGGTACTTAGTCTGTATGTTTTCTATAATGCAGTAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCAGTAAGTCACTTCATTTCATCCTACTGGTTTTCCAACTCGTCCGAATACAAAGAAAAAAAAGAGAACAAACATGTGATACTCCTGTTTCAATTTGTTTATCTAGTTTTGAAACGGACTAAAAAGGGAAGTAAGACGAACAAAATGAAACGGAGGGACTGAGGGAGTATGTATCTTAGTAGGAGGGCTCATTTCCTTCTTCTGAAGTTGACAATGCTAAAAAGTTTCTTTCTCTTTTCCAGTATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAGGTAAGTTACATGTTATTGCAGAGAATCGCTCGTGAATGGCATTACAATGCACTCATTAGGTTAATGAACTAGGTTCATCTCTAGTACATGAATTCATTCGATCCATTTATTAGAATACATGTACTGCACTAGTAAGATTTTAGAAGAACACTTAAAAATACGTATGCACTATAAACATATTGGGATATTTGGAGCAACGGTCAAGTTGTCTCTGTGTGACCAACATGTTACGAGTTTGAGCCGTGAACTCAGTAACTGATCCTTGCATTAGTTTATGCTTTCTACATTACACACTCCCTTGTGGTGTGGCTCTTCCCCGGACCCTGCATAGACATGTGATGTATCGTGCTTCGTGCTTATGTGCTTCAACTACCTTATAACTTCTTAAATTGCTCTACAACTATAGATTCATTTGTTTATTTCTGCAGATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTGGTCAGTATGATCTTCCTACCTTTGCAGAATATATTTCATCTGGAAGAATCTGAATTGAATTTTCCTTTTAACTTACTGTAGTAGATAATCTGTCTTATTTTCCGAGAACGAATATCAGTAGTTACATTGTCAGTATATAAAAGTTAAACTCACGCGATTTATGGTCATGCAGGGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAG</genome_strand>
        <mrna_strand>ATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCG....................................................................................................................................................................................................................................................................................................................................................................................................TAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCA...............................................................................................................................................................................................................................................TATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTG............................................................................................................................................................................GGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270821" ref_strand="+" ref_description="SGN-E270821 [cLEM-6-A20]">
      <seq>atatccgaccccatatcaagcttcaaacagcactagtccgctttggtattccatcaggagggcgtctgctcacataattgtgctatcaacctactctcctttcgtaaaatatacaccacaatggaagtggctgagagaggaattcaaaaatattgacagagagaaaactccttggcttatagttcttatgcatgttcctatctacaacagtaatgtagctcatttcatggagggagaaagtatgagatccgtcttcgaagcatggtttatcgaacacaaagttgatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="101794" stop="103072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102094" g_stop="102197" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102198" i_stop="102585" i_length="388">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102586" g_stop="102772" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="291" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E270821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102094" e_stop="102197"/>
          <exon e_start="102586" e_stop="102772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCGGTAATTTATCCGTTCCTGTTTCATGATTCTTGTTTGTTTCTGTTGTTAGCTGTTTTTACCTTGTCAATCTTGAGAATATAATCAAGTAAATGAAAACGCGTTCTCCCTAAACGATTTAACCTCTGAAATGAGATGGTCACACACTTCAATATGGAATCAGACTACACCACTCATTATTAGAAAGAATTTTTTTCCACGTACTTTGTCCACGAGTGAAGAAAGAATAGGCTTCTTCATGTTTAGAATAAAGTAATCGTTCTTGATGTTCTTAAACGCGAAGCAACAACCTTAAGGCCCTTATTTCAATGTTTATAGACATAACGAGAATTGTTGTGAAGTAAGTATTTGTTCACATAGGTACTTAGTCTGTATGTTTTCTATAATGCAGTAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGAT</genome_strand>
        <mrna_strand>ATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCG....................................................................................................................................................................................................................................................................................................................................................................................................TAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370146" ref_strand="+" ref_description="SGN-E370146 [TUS-28-A10](-)">
      <seq>atccgtcttcgaagcatggtttatcgaacacaaagttgatgtgatctttgctggtcatgtccacgcctacgaaagatcatatcgcatatcaaatatacactttaacatctcgagtggtgatccctatcctgtacctgatgaaacagctccagtttacataactgttggtgatggaggaaataaagaaggtcttgctgcaagatttagagatcctcaaccagattactcagctttccgcgaatccagttatggtcattctacactagagattaagaacagaacacatgcattctaccattggaacagaaatgacgatggaaagaaagttaaaatcgactcattcgtgttacacaatctgtactggggacagaatcatcaccagagaaagtcgaaacaaaatcgtctccgttcactcattttaaacagagcttcaactgcacaactgtgagaacatatttctgcaacttactctcaaattagctgcagttttatggccatagattttaatatctcaatgggcaatgacaactaataagtttgaatatctatttgctttgttggactatttggctaattatttgagccgagggtctatcagaaaacgtctgcgtacacactaccctccctagacccttgttgtgggattatactgcgtatgttattggactatttggcttattttccaccaaatatttatcattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="102428" stop="104576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102728" g_stop="102806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102807" i_stop="103045" i_length="239">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.660" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103046" g_stop="103167" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="201" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103168" i_stop="103595" i_length="428">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103596" g_stop="103757" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="363" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103930" g_stop="104279" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="713" r_length="350" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E370146" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102728" e_stop="102806"/>
          <exon e_start="103046" e_stop="103167"/>
          <exon e_start="103596" e_stop="103757"/>
          <exon e_start="103930" e_stop="104279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCAGTAAGTCACTTCATTTCATCCTACTGGTTTTCCAACTCGTCCGAATACAAAGAAAAAAAAGAGAACAAACATGTGATACTCCTGTTTCAATTTGTTTATCTAGTTTTGAAACGGACTAAAAAGGGAAGTAAGACGAACAAAATGAAACGGAGGGACTGAGGGAGTATGTATCTTAGTAGGAGGGCTCATTTCCTTCTTCTGAAGTTGACAATGCTAAAAAGTTTCTTTCTCTTTTCCAGTATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAGGTAAGTTACATGTTATTGCAGAGAATCGCTCGTGAATGGCATTACAATGCACTCATTAGGTTAATGAACTAGGTTCATCTCTAGTACATGAATTCATTCGATCCATTTATTAGAATACATGTACTGCACTAGTAAGATTTTAGAAGAACACTTAAAAATACGTATGCACTATAAACATATTGGGATATTTGGAGCAACGGTCAAGTTGTCTCTGTGTGACCAACATGTTACGAGTTTGAGCCGTGAACTCAGTAACTGATCCTTGCATTAGTTTATGCTTTCTACATTACACACTCCCTTGTGGTGTGGCTCTTCCCCGGACCCTGCATAGACATGTGATGTATCGTGCTTCGTGCTTATGTGCTTCAACTACCTTATAACTTCTTAAATTGCTCTACAACTATAGATTCATTTGTTTATTTCTGCAGATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTGGTCAGTATGATCTTCCTACCTTTGCAGAATATATTTCATCTGGAAGAATCTGAATTGAATTTTCCTTTTAACTTACTGTAGTAGATAATCTGTCTTATTTTCCGAGAACGAATATCAGTAGTTACATTGTCAGTATATAAAAGTTAAACTCACGCGATTTATGGTCATGCAGGGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTT</genome_strand>
        <mrna_strand>ATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCA...............................................................................................................................................................................................................................................TATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTG............................................................................................................................................................................GGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538340" ref_strand="+" ref_description="SGN-E538340 [TUS-57-H14](-)">
      <seq>gaaagatcatatcgcatatcaaatatacactttaacatctcgagtggtgatccctatcctgtacctgatgaaacagctccagtttacataactgttggtgatggaggaaataaagaaggtcttgctgcaagatttagagatcctcaaccagattactcagctttccgcgaatccagttatggtcattctacactagagattaagaacagaacacatgcattctaccattggaacagaaatgacgatggaaagaaagttaaaatcgactcattcgtgttacacaatctgtactggggacagaatcatcaccagagaaagtcgaaacaaaatcgtctccgttcactcattttaaacagagcttcaactgcacaactgtgagaacatatttctgcaacttactctcaaattagctgcagttttatggccatagattttaatatctcaatgggcaatgacaactaataagtttgaatatctatttgctttgttggactatttggctaattatttgagccgagggtctatcagaaaacgtctgcgtacacactaccctccctagacccttgttgtgggattatactgcgtatgttattggactatttggcttattttccaccaaatatttatcattcaaataagagtttgtgctgtttacgcaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="102743" stop="104595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102798" g_stop="102806" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102807" i_stop="103045" i_length="239">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.660" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103046" g_stop="103167" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="131" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103168" i_stop="103595" i_length="428">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103596" g_stop="103757" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="293" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103930" g_stop="104292" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="656" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="676"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E538340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102798" e_stop="102806"/>
          <exon e_start="103046" e_stop="103167"/>
          <exon e_start="103596" e_stop="103757"/>
          <exon e_start="103930" e_stop="104292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCAGTAAGTCACTTCATTTCATCCTACTGGTTTTCCAACTCGTCCGAATACAAAGAAAAAAAAGAGAACAAACATGTGATACTCCTGTTTCAATTTGTTTATCTAGTTTTGAAACGGACTAAAAAGGGAAGTAAGACGAACAAAATGAAACGGAGGGACTGAGGGAGTATGTATCTTAGTAGGAGGGCTCATTTCCTTCTTCTGAAGTTGACAATGCTAAAAAGTTTCTTTCTCTTTTCCAGTATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAGGTAAGTTACATGTTATTGCAGAGAATCGCTCGTGAATGGCATTACAATGCACTCATTAGGTTAATGAACTAGGTTCATCTCTAGTACATGAATTCATTCGATCCATTTATTAGAATACATGTACTGCACTAGTAAGATTTTAGAAGAACACTTAAAAATACGTATGCACTATAAACATATTGGGATATTTGGAGCAACGGTCAAGTTGTCTCTGTGTGACCAACATGTTACGAGTTTGAGCCGTGAACTCAGTAACTGATCCTTGCATTAGTTTATGCTTTCTACATTACACACTCCCTTGTGGTGTGGCTCTTCCCCGGACCCTGCATAGACATGTGATGTATCGTGCTTCGTGCTTATGTGCTTCAACTACCTTATAACTTCTTAAATTGCTCTACAACTATAGATTCATTTGTTTATTTCTGCAGATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTGGTCAGTATGATCTTCCTACCTTTGCAGAATATATTTCATCTGGAAGAATCTGAATTGAATTTTCCTTTTAACTTACTGTAGTAGATAATCTGTCTTATTTTCCGAGAACGAATATCAGTAGTTACATTGTCAGTATATAAAAGTTAAACTCACGCGATTTATGGTCATGCAGGGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACT</genome_strand>
        <mrna_strand>GAAAGATCA...............................................................................................................................................................................................................................................TATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTG............................................................................................................................................................................GGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548041" ref_strand="+" ref_description="SGN-E548041 [TUS-57-H18](-)">
      <seq>ggtgatccctatcctgtacctgatgaaaccagctccagtttacataactgttggtgatggaggaaataaagaaggtcttgctgcaagatttagagatcctcaaccagattattcagctttccgcgaatccagttatggtcattctacactagagattaagaacagaacacatgcattctaccattggaacagaaatgacgatggaaagaaagttaaaatcgactcattcgtgttacacaatctgtactggggacagaatcatcaccagagaaagtcgaaacaaaatcgtctccgttcactcattttaaacagagcttcaactgcacaactgtgagaacatatttctgcaacttactctcaaattagctgcagttttatggccatagattttaatatctcaatgggcaatgacaactaataagtttgaatatctatttgctttgttggactatttggctaattatttgagccgagggtctatcagaaaacgtctgcgtacacactaccctccctagacccttgttgtgggattatactgcgtatgttattggactatttggcttattttccaccaaatatttatcattcaaataagagtttgtgcttttccccaattttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="102782" stop="104591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103082" g_stop="103167" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103168" i_stop="103595" i_length="428">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103596" g_stop="103757" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="249" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103930" g_stop="104285" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="605" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E548041" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103082" e_stop="103167"/>
          <exon e_start="103596" e_stop="103757"/>
          <exon e_start="103930" e_stop="104285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCCTATCCTGTACCTGATGAAA-CAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAGGTAAGTTACATGTTATTGCAGAGAATCGCTCGTGAATGGCATTACAATGCACTCATTAGGTTAATGAACTAGGTTCATCTCTAGTACATGAATTCATTCGATCCATTTATTAGAATACATGTACTGCACTAGTAAGATTTTAGAAGAACACTTAAAAATACGTATGCACTATAAACATATTGGGATATTTGGAGCAACGGTCAAGTTGTCTCTGTGTGACCAACATGTTACGAGTTTGAGCCGTGAACTCAGTAACTGATCCTTGCATTAGTTTATGCTTTCTACATTACACACTCCCTTGTGGTGTGGCTCTTCCCCGGACCCTGCATAGACATGTGATGTATCGTGCTTCGTGCTTATGTGCTTCAACTACCTTATAACTTCTTAAATTGCTCTACAACTATAGATTCATTTGTTTATTTCTGCAGATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTGGTCAGTATGATCTTCCTACCTTTGCAGAATATATTTCATCTGGAAGAATCTGAATTGAATTTTCCTTTTAACTTACTGTAGTAGATAATCTGTCTTATTTTCCGAGAACGAATATCAGTAGTTACATTGTCAGTATATAAAAGTTAAACTCACGCGATTTATGGTCATGCAGGGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCT</genome_strand>
        <mrna_strand>GGTGATCCCTATCCTGTACCTGATGAAACCAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAGATCCTCAACCAGATTATTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTG............................................................................................................................................................................GGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223941" ref_strand="+" ref_description="SGN-E223941 [cLEL-19-J17](-)">
      <seq>aatctgtactggggacaaaatcatcaccaaagaaagtcgaagcacaatcgtctccgttcactcattttaaacagagcttcaactgcgcacctgtgagaacatatttctgcaacttactctcaaattagctacagttttatggccatagattttaatatctccatgggcaatcacaactaataagtttgaatatctatttgctttgttggactatttggctaattatttgagccgagggtctatcagaaaacgtctgcgtacacactaccctccctagacccttgttgtgggattatactgcgtatgttattggactatttggcttattttccgccaaatatttatcattcaaataagagtttgtgctgtttactgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="103625" stop="104595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103747" g_stop="103757" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172">
            <donor d_prob="0.923" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103930" g_stop="104294" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="376" r_length="365" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="396"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E223941" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103747" e_stop="103757"/>
          <exon e_start="103930" e_stop="104294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTACTGGTCAGTATGATCTTCCTACCTTTGCAGAATATATTTCATCTGGAAGAATCTGAATTGAATTTTCCTTTTAACTTACTGTAGTAGATAATCTGTCTTATTTTCCGAGAACGAATATCAGTAGTTACATTGTCAGTATATAAAAGTTAAACTCACGCGATTTATGGTCATGCAGGGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACTGC</genome_strand>
        <mrna_strand>AATCTGTACTG............................................................................................................................................................................GGGACAAAATCATCACCAAAGAAAGTCGAAGCACAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCGCACCTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTACAGTTTTATGGCCATAGATTTTAATATCTCCATGGGCAATCACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCGCCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224321" ref_strand="+" ref_description="SGN-E224321 [cLEL-19-J17](-)">
      <seq>tccgttcactcattttaaacagagcttcaactgcgcacctgtgagcacatatttctgcaacttgctctcaaattagctgcagttttatggccataggttttaatatctcaatgggcaatcacaactaataagtttgaatctctatttgctttgttggactatttggctaattatttgagccgagggtccatcagaaaacgtctgcgtacacactaccctccctagacccttgttgtgggattatacagcgtatgttattggactgtttggcttattttccgccaaatatttatcattcaaataagagtttgtgctgtttactgctcacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="103671" stop="104598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103971" g_stop="104294" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="344"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E224321" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103971" e_stop="104294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACTGC</genome_strand>
        <mrna_strand>TCCGTTCACTCATTTTAAACAGAGCTTCAACTGCGCACCTGTGAGCACATATTTCTGCAACTTGCTCTCAAATTAGCTGCAGTTTTATGGCCATAGGTTTTAATATCTCAATGGGCAATCACAACTAATAAGTTTGAATCTCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCCATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACAGCGTATGTTATTGGACTGTTTGGCTTATTTTCCGCCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426376" ref_strand="-" ref_description="SGN-E426376 [STM-46-B9]">
      <seq>gaaggctcaaatcaagaacaaaaccagggttgtaaatgaaagtctaaacccggtatggaatcaaacttttgactttgttgttgaggacggattacatgacatgctaatgctggaagtctgggaccatgacacgtttggaaaggatttcatgggaagatgcatactgactttaacaagggttctaatggaaggtgaatacaaagacacgtacgaattagccgaggctaaatcagggaaactgaacttgcatctcaaatggaatccacagccaatatacagagactaccaatgatgaacatcaaacttcagttttacattcttgttagttttgtacagggagtaaaatttctttgattccctaatagactgggaacgacagcacgtataatcgaatattttctgtacatgatttaataataacagaagagagataaagtaaagttgtgaaacttttgaagagaagctgaagttgaagctggacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="106659" stop="104603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106359" g_stop="106332" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106331" i_stop="105791" i_length="541">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.497" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105790" g_stop="105677" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="142" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105676" i_stop="105243" i_length="434">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105242" g_stop="104903" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="484" r_length="342" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E426376" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106359" e_stop="106332"/>
          <exon e_start="105790" e_stop="105677"/>
          <exon e_start="105242" e_stop="104903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTCAAATCAAGAACAAAACCAGGGTATACTTTCTTCGTACTATTTAATTCTCGGTAAATTTATTTATAATGTTTTTCCTTTTTTCGGTAAGTAGGAGAAGAAACAATATGCCATGATCCTCATTTTTGCATATGATCTCTATGTAGCCTTTGGCTCGTACTCTGTGTTATACACTCGATAAGTACAAATAATTGATTTCAACCCCAGTAAATGAAATGAATTGTTGGATAATGTCAAAGTCGAACAACTTATCAGAAAAAAAAAAACCCTGAACTTGAGCCCACAAGGTTCAAATCCTGAATCCACCTCTACTAATATTGAGTCTATGGGAACCACCAAGTTCGTATTATTCTTGTTTACAGTACTTTGCATCGAGCATCAACATTCATAACTAGATATATTGCTGAATGGTACTAACAATAACTACACCTCAATCCAAAGCAAATTAGGGTCGGCTATATGAATTTTCAGCATCCATGTCACAACATCGCTCATCTAATTTTTTATGATACTGATTATCACTTCCCAAAAAACTATCTAACGTTTATTATCTGCTTCCGTTAGGTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAGGTAAGAGTATCTGCCCCTTGAATAATTTCCATATGATTATCCGATGAATATTTTTGGTCCTCACGCAATATATCATTAAGCACTTATTTAACATCATTAGTATCTTTCATCACCTCATAGCCTAACACGCCCATTACTTGTTTCACATTATTAGTAAACAATGAGCTAAATGATTATGTCAATATATCATTAAGCATTGGAAAACGCTTATGTAATGGGCATGTTGGCCTATGATCCATTGTTTAGCTCATCTTGATCCTTCCCATCTCAGTCGAGTGATCTTTGAGCGGACAACTCATATTGACCCGCTCAAATTTAGCCTAACCCGCCCATTTAACACCCCTACGTGCAAGTATGGAGAGTACACTTGTCATATCTTATTTCTTGATTATTGTATTGATACTTTTTTCGAATGCTTCCAACTTTCTTCACAGGATTTCATGGGAAGATGCATACTGACTTTAACAAGGGTTCTAATGGAAGGTGAATACAAAGACTCGTACGAATTAGCTGAGGCTAAATCAGGGAAACTGAACCTGCATCTCAAATGGAATCCACAGCCAATATACAGAGACCACTAATGATGAACATCAAACTTCAGGTTTACATTCTTGTTAG-TTTGTACAGGGAGTAACATTTCTTTGATTCCCTAATAGACTGGGAACGACAACACGTATAATCGAATA-TTTCTGTACATGATTTATTATAAACAGAAGAGAGATATTGTAAAGCTGTGAAACTTTTGAACAGAAGCTGAAGTTGAAGCTGGACAAG</genome_strand>
        <mrna_strand>GAAGGCTCAAATCAAGAACAAAACCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAATGAAAGTCTAAACCCGGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGACGGATTACATGACATGCTAATGCTGGAAGTCTGGGACCATGACACGTTTGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGGAAGATGCATACTGACTTTAACAAGGGTTCTAATGGAAGGTGAATACAAAGACACGTACGAATTAGCCGAGGCTAAATCAGGGAAACTGAACTTGCATCTCAAATGGAATCCACAGCCAATATACAGAGACTACCAATGATGAACATCAAACTTCAGTTTTACATTCTTGTTAGTTTTGTACAGGGAGTAAAATTTCTTTGATTCCCTAATAGACTGGGAACGACAGCACGTATAATCGAATATTTTCTGTACATGATTTAATAATAACAGAAGAGAGATAAAGTAAAGTTGTGAAACTTTTGAAGAGAAGCTGAAGTTGAAGCTGGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703748" ref_strand="+" ref_description="SGN-E703748 [FA22BD12]">
      <seq>ctgatcctttcgctgtattatatgtacgccctctacgagacagaatgaagaagagcaaaataattaacaacgatttgaacccaatttggaatgagcattttgagtttgtagtcgaagatccattgacacaacacttggtggtaaaaatctatgacgatgaagggcttcagtcagctgaactaattggatgtgcccatatatgtttgaatgagcttgagcctggtaaagtgaaggatatctggttgaagttggtgaaagatttggaaattcagagagatcagaaaaataggggccaggtgcacttggagctattgtactgcccgaatggcatgaacaatgggctaagtaaccctttttctcaaaatgagtcaatgacttcattagagagagttcttaaaaactcagcagaaggaaaagaagctagtccaaacggaagtgaaatcaacaatagaagagaggtaatagtacgaggggtactttctgttactgtggtatcagctgatgatctgcccccagctgatataggggggaaggctgacccctacgtcgttctgatcatgaagaaggctcaaatcaagaacaaaaccagggttgtaaatgaaagtctaaaccctgtatggaatcaaacttttgactttgttgttgaggatggattacatgatatgcttatgctggaagtctgggaccatgacacattcggaaaggatttcatgggaagatgcatactgactttaacaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="107735" stop="104905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107435" g_stop="107371" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107370" i_stop="107290" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107289" g_stop="107059" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="296" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107058" i_stop="106626" i_length="433">
            <donor d_prob="0.504" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106625" g_stop="106332" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="590" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106331" i_stop="105791" i_length="541">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.497" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105790" g_stop="105677" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="704" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105676" i_stop="105243" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105242" g_stop="105205" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="742" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E703748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107435" e_stop="107371"/>
          <exon e_start="107289" e_stop="107059"/>
          <exon e_start="106625" e_stop="106332"/>
          <exon e_start="105790" e_stop="105677"/>
          <exon e_start="105242" e_stop="105205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCTTTCGCTGTATTATATGTACGCCCTCTACGAGACAGAATGAAGAAGAGCAAAATAATTGTAAGTTATCTCTATTTCTCTGGAAAAGTTTCTTTAATTCATTCGATCAAGTTAAGATTGAAGTAAGAATCTTTATTTCAGAACAACGATTTGAACCCAATTTGGAATGAGCATTTTGAGTTTGTAGTCGAAGATCCATTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCAGCTGAACTAATTGGATGTGCCCATATATGTTTGAATGAGCTTGAGCCTGGTAAAGTGAAGGATATCTGGTTGAAGTTGGTGAAAGATTTGGAAATTCAGAGAGATCAGAAAAATAGGGGCCAGGTGACGACTCCGACTCCTTTTTACTTTCCATGGCTATGTCAGATGCATGCTGTAGTAGCTAGATATATACCACATATAGTACTTGTAAATTTGATGGAAAATATATGCACGACATCAAAAATGTTGGAAAGCTAGTGATTTTTCAGCAATAATTATATTAAACAGCATTTTACTGTTCAAAATGAGTGCCTGTGGTACCCAGAGGATCCGAACTCCTTTTCAATTTTACTTTTCATGTATATACACTAGATGTTGAATCCCCTCGGCTTCCTGGTGAATTTATTTCTTTTTATTTTGCATTCCCTTATTGAAAATTCTAATAATGGCTCCGGCATTGTTGGCACCGATTGTCCTGTGAATAGTAATTGTTAGCAGAAAACATAGAATAGTCTCTGTGCTTGATGTGTTAACTGTTCTCATTATCTTTTGCCAGGTGCACTTGGAGCTATTGTACTGCCCGAATGGCATGAACAATGGGCTAAGTAACCCTTTTTCTCAAAATGAGTCAATGACTTCATTAGAGAGAGTTCTTAAAAACTCAGCAGAAGGAAAAGAAGCTAGTCCAAACGGAAGTGAAATCAACAATAGAAGAGAGGTAATAGTACGAGGGGTACTTTCTGTTACTGTGGTATCAGCTGATGATCTGCCCCCAGCTGATATAGGGGGGAAGGCTGACCCCTACGTCGTTCTGATCATGAAGAAGGCTCAAATCAAGAACAAAACCAGGGTATACTTTCTTCGTACTATTTAATTCTCGGTAAATTTATTTATAATGTTTTTCCTTTTTTCGGTAAGTAGGAGAAGAAACAATATGCCATGATCCTCATTTTTGCATATGATCTCTATGTAGCCTTTGGCTCGTACTCTGTGTTATACACTCGATAAGTACAAATAATTGATTTCAACCCCAGTAAATGAAATGAATTGTTGGATAATGTCAAAGTCGAACAACTTATCAGAAAAAAAAAAACCCTGAACTTGAGCCCACAAGGTTCAAATCCTGAATCCACCTCTACTAATATTGAGTCTATGGGAACCACCAAGTTCGTATTATTCTTGTTTACAGTACTTTGCATCGAGCATCAACATTCATAACTAGATATATTGCTGAATGGTACTAACAATAACTACACCTCAATCCAAAGCAAATTAGGGTCGGCTATATGAATTTTCAGCATCCATGTCACAACATCGCTCATCTAATTTTTTATGATACTGATTATCACTTCCCAAAAAACTATCTAACGTTTATTATCTGCTTCCGTTAGGTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAGGTAAGAGTATCTGCCCCTTGAATAATTTCCATATGATTATCCGATGAATATTTTTGGTCCTCACGCAATATATCATTAAGCACTTATTTAACATCATTAGTATCTTTCATCACCTCATAGCCTAACACGCCCATTACTTGTTTCACATTATTAGTAAACAATGAGCTAAATGATTATGTCAATATATCATTAAGCATTGGAAAACGCTTATGTAATGGGCATGTTGGCCTATGATCCATTGTTTAGCTCATCTTGATCCTTCCCATCTCAGTCGAGTGATCTTTGAGCGGACAACTCATATTGACCCGCTCAAATTTAGCCTAACCCGCCCATTTAACACCCCTACGTGCAAGTATGGAGAGTACACTTGTCATATCTTATTTCTTGATTATTGTATTGATACTTTTTTCGAATGCTTCCAACTTTCTTCACAGGATTTCATGGGAAGATGCATACTGACTTTAACAAGGGT</genome_strand>
        <mrna_strand>CTGATCCTTTCGCTGTATTATATGTACGCCCTCTACGAGACAGAATGAAGAAGAGCAAAATAATT.................................................................................AACAACGATTTGAACCCAATTTGGAATGAGCATTTTGAGTTTGTAGTCGAAGATCCATTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCAGCTGAACTAATTGGATGTGCCCATATATGTTTGAATGAGCTTGAGCCTGGTAAAGTGAAGGATATCTGGTTGAAGTTGGTGAAAGATTTGGAAATTCAGAGAGATCAGAAAAATAGGGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGGAGCTATTGTACTGCCCGAATGGCATGAACAATGGGCTAAGTAACCCTTTTTCTCAAAATGAGTCAATGACTTCATTAGAGAGAGTTCTTAAAAACTCAGCAGAAGGAAAAGAAGCTAGTCCAAACGGAAGTGAAATCAACAATAGAAGAGAGGTAATAGTACGAGGGGTACTTTCTGTTACTGTGGTATCAGCTGATGATCTGCCCCCAGCTGATATAGGGGGGAAGGCTGACCCCTACGTCGTTCTGATCATGAAGAAGGCTCAAATCAAGAACAAAACCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGGAAGATGCATACTGACTTTAACAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239645" ref_strand="+" ref_description="SGN-E239645 [cLED-23-P18]">
      <seq>acaatgggctaagtaaccctttttctcaaaatgagtcaatgacttcattagagagagttcttaaaaactcagcagaaggaaaagaagctagtccaaacggaagtgaaatcaacaatagaagagaggtaatagtacgaggggtactttctgttactgtggtatcagctgatgatctgcccccagctgatataggggggaaggctgacccctacgtcgttctgatcatgaagaaggctcaaatcaagaacaaaaccagggttgtaaatgaaagtctaaaccctgtatggaatcaaacttttgactttgttgttgaggatggattacatgatatgcttatgctggaagtctgggaccatgacacattcggaaaggatttcatgggaagatgcatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="106888" stop="104918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106588" g_stop="106332" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106331" i_stop="105791" i_length="541">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.497" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105790" g_stop="105677" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="371" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105676" i_stop="105243" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105242" g_stop="105218" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="396" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E239645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106588" e_stop="106332"/>
          <exon e_start="105790" e_stop="105677"/>
          <exon e_start="105242" e_stop="105218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGGCTAAGTAACCCTTTTTCTCAAAATGAGTCAATGACTTCATTAGAGAGAGTTCTTAAAAACTCAGCAGAAGGAAAAGAAGCTAGTCCAAACGGAAGTGAAATCAACAATAGAAGAGAGGTAATAGTACGAGGGGTACTTTCTGTTACTGTGGTATCAGCTGATGATCTGCCCCCAGCTGATATAGGGGGGAAGGCTGACCCCTACGTCGTTCTGATCATGAAGAAGGCTCAAATCAAGAACAAAACCAGGGTATACTTTCTTCGTACTATTTAATTCTCGGTAAATTTATTTATAATGTTTTTCCTTTTTTCGGTAAGTAGGAGAAGAAACAATATGCCATGATCCTCATTTTTGCATATGATCTCTATGTAGCCTTTGGCTCGTACTCTGTGTTATACACTCGATAAGTACAAATAATTGATTTCAACCCCAGTAAATGAAATGAATTGTTGGATAATGTCAAAGTCGAACAACTTATCAGAAAAAAAAAAACCCTGAACTTGAGCCCACAAGGTTCAAATCCTGAATCCACCTCTACTAATATTGAGTCTATGGGAACCACCAAGTTCGTATTATTCTTGTTTACAGTACTTTGCATCGAGCATCAACATTCATAACTAGATATATTGCTGAATGGTACTAACAATAACTACACCTCAATCCAAAGCAAATTAGGGTCGGCTATATGAATTTTCAGCATCCATGTCACAACATCGCTCATCTAATTTTTTATGATACTGATTATCACTTCCCAAAAAACTATCTAACGTTTATTATCTGCTTCCGTTAGGTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAGGTAAGAGTATCTGCCCCTTGAATAATTTCCATATGATTATCCGATGAATATTTTTGGTCCTCACGCAATATATCATTAAGCACTTATTTAACATCATTAGTATCTTTCATCACCTCATAGCCTAACACGCCCATTACTTGTTTCACATTATTAGTAAACAATGAGCTAAATGATTATGTCAATATATCATTAAGCATTGGAAAACGCTTATGTAATGGGCATGTTGGCCTATGATCCATTGTTTAGCTCATCTTGATCCTTCCCATCTCAGTCGAGTGATCTTTGAGCGGACAACTCATATTGACCCGCTCAAATTTAGCCTAACCCGCCCATTTAACACCCCTACGTGCAAGTATGGAGAGTACACTTGTCATATCTTATTTCTTGATTATTGTATTGATACTTTTTTCGAATGCTTCCAACTTTCTTCACAGGATTTCATGGGAAGATGCATACTGA</genome_strand>
        <mrna_strand>ACAATGGGCTAAGTAACCCTTTTTCTCAAAATGAGTCAATGACTTCATTAGAGAGAGTTCTTAAAAACTCAGCAGAAGGAAAAGAAGCTAGTCCAAACGGAAGTGAAATCAACAATAGAAGAGAGGTAATAGTACGAGGGGTACTTTCTGTTACTGTGGTATCAGCTGATGATCTGCCCCCAGCTGATATAGGGGGGAAGGCTGACCCCTACGTCGTTCTGATCATGAAGAAGGCTCAAATCAAGAACAAAACCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGGAAGATGCATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259395" ref_strand="+" ref_description="SGN-E259395 [cLEG-43-D20]">
      <seq>gctggattttacgcttaaagtggttggtggtgacatgacagcaatacctggcatttctgatgcaattgagggtaccatccgcgatgccattgaagactctatcatatggccagtccgaaaaattattcccattttgcctggggattatagtgaccttgaactgaaacctactggagtattggaggtgaaacttgttcaagcaaaagagttaacaaacaaggacatcattggtaaatctgatccttttgctgagttatatgtacgccctgtacgagatagaatgaagaagagcaaaacaattaacaacgaactgaatccaatctggaatgagcatttcgagtttgtagttgaagatccattgacacaacacttggtgataaagatctatgatgatgaagggcttcaagcagctgaactaattggatgcgcacatgttcgtttgaatgagcttgagcctggtaaagtgaaggatgtttggctgaagttggtgaaagatttggagatccagagagaccaaaagaataggggccaggtgcacttggagctattatattgtccttatggcatgacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="109252" stop="106283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108952" g_stop="108883" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108882" i_stop="108233" i_length="650">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108232" g_stop="108153" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="150" r_length="80" r_score="0.887"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108152" i_stop="107522" i_length="631">
            <donor d_prob="0.726" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107521" g_stop="107371" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="301" r_length="151" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107370" i_stop="107290" i_length="81">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.445" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107289" g_stop="107059" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="532" r_length="231" r_score="0.896"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107058" i_stop="106626" i_length="433">
            <donor d_prob="0.504" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106625" g_stop="106583" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="575" r_length="43" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E259395" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108952" e_stop="108883"/>
          <exon e_start="108232" e_stop="108153"/>
          <exon e_start="107521" e_stop="107371"/>
          <exon e_start="107289" e_stop="107059"/>
          <exon e_start="106625" e_stop="106583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGATTTTACGCTTAAAGTAATTGGTGGTGACATGACAGCAATTCCTGGCCTTTCTGATGCAATTGAGGTTTGGGCGAACTCTTACCACTAAATCTGTTTCTCTGTTTGATGTGGATGTAATTGTTCTTTGATAAAGTTGATGAGATGTAATGAAGGCCTACTGATGCCATGGATATTTGGCTGGCGTAGCCAAGCCTTATTTTGTTTCCCCTTATTCTCTCTCAGAAGAGAAACGGAAGGAACAGAAAGAAGTAAAAATTTTGAAGTAGTGGCTTAGTGTTATAACTACAAGGATAGGGTGTCTTTGTAGTGGTTAACTTCATCCTTGTTTAGGAAATCCGGGAGCTTGATTCACGACATGTTAACAAGATAAAACTATTTCTCATGTTTCTTTGGTAAACATTCTATGTTGTCTTGAACTTGCCTAAAACTTCTGTATTTCAATATGGATAACGGTATTTACTTGAAAAATGAAATGGCACATACTTTATGAGAATCAAGGAGTGTTGTGTGAAAATTTTCGAACAACAATTTGTTTCTTAGTGCATTCTTAGGACTATTCTCATTTGAGAAAAGAGAGGAACAACGAATTTGCTGCTTTGAGTTGTTTGCCTGAACTTGAATTTTTTTTTATGCAGTCATAAAATAGAAAGCTTAGCAAATGTTAGTTATGATTTACTACACTCTAGGTGTACTAAAATGACTTTATTTCTCCAGGGAACCATCCGGGACGCTGTTGAAGACTCTATCACATGGCCAGTTCGAAAAGTTATTCCCATTTTACCTGGGGATTATAGGTATTGATAATGACAATGATGAATTCTTTGAACAATCTTGGTTTCACTGATCCACTTTATCTTTGGCCTGCCCCAATCTTGGTTCAAGTCGTTGGACCTCGGAAGGACCTTAGAATACTCCCTCCATTCCAACTTGTTTACCATTTTAGTCCGTTTAAAAAGGAATTCCTCTTTCCTTTTTTAGTAACTCTTTAACTCTAACTTTCCACGTGACATCTATAAGACCACAAGATCAAAGAACATTTGGATACATTCTATGTATCTTTAATTTAAGACCACATGATTCGAATGTTTTCTTTTACTTTCTTAAACTTCGTTCCAAGTCAAAACCAAGCAAACTAATTGAAACGAAGGGAGTACAAGATTTCCAAAAGCAGAATTAGGACTAAGATTTGAAGAGTAGTCCCCTCAACTTGTGTCGGACTTCCATCCATTTTGCGTTGAACTAGGAAAGTCAAAACGTTATGTCATGCAACTACGTATATATCTCATGTTCATATCGGAGCTGTAAAAGAAATTTTTCAGTGGATCATTTTGCATATGTATGTTAACTGAAAAAGACAAGTTTAACATTTAGATTTTGATTGGCAACTGCTTAATCCTTATTGATATCTATTTTCTTGTTTACCAGTGACCTTGAACTGAAGCCTACCGGAGTATTGGAGGTGAAACTTGTTCAAGCAAAGGAGTTAACAAATAAAGACATCATTGGAAAATCTGATCCTTTCGCTGTATTATATGTACGCCCTCTACGAGACAGAATGAAGAAGAGCAAAATAATTGTAAGTTATCTCTATTTCTCTGGAAAAGTTTCTTTAATTCATTCGATCAAGTTAAGATTGAAGTAAGAATCTTTATTTCAGAACAACGATTTGAACCCAATTTGGAATGAGCATTTTGAGTTTGTAGTCGAAGATCCATTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCAGCTGAACTAATTGGATGTGCCCATATATGTTTGAATGAGCTTGAGCCTGGTAAAGTGAAGGATATCTGGTTGAAGTTGGTGAAAGATTTGGAAATTCAGAGAGATCAGAAAAATAGGGGCCAGGTGACGACTCCGACTCCTTTTTACTTTCCATGGCTATGTCAGATGCATGCTGTAGTAGCTAGATATATACCACATATAGTACTTGTAAATTTGATGGAAAATATATGCACGACATCAAAAATGTTGGAAAGCTAGTGATTTTTCAGCAATAATTATATTAAACAGCATTTTACTGTTCAAAATGAGTGCCTGTGGTACCCAGAGGATCCGAACTCCTTTTCAATTTTACTTTTCATGTATATACACTAGATGTTGAATCCCCTCGGCTTCCTGGTGAATTTATTTCTTTTTATTTTGCATTCCCTTATTGAAAATTCTAATAATGGCTCCGGCATTGTTGGCACCGATTGTCCTGTGAATAGTAATTGTTAGCAGAAAACATAGAATAGTCTCTGTGCTTGATGTGTTAACTGTTCTCATTATCTTTTGCCAGGTGCACTTGGAGCTATTGTACTGCCCGAATGGCATGAACAATG</genome_strand>
        <mrna_strand>GCTGGATTTTACGCTTAAAGTGGTTGGTGGTGACATGACAGCAATACCTGGCATTTCTGATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCATCCGCGATGCCATTGAAGACTCTATCATATGGCCAGTCCGAAAAATTATTCCCATTTTGCCTGGGGATTATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTTGAACTGAAACCTACTGGAGTATTGGAGGTGAAACTTGTTCAAGCAAAAGAGTTAACAAACAAGGACATCATTGGTAAATCTGATCCTTTTGCTGAGTTATATGTACGCCCTGTACGAGATAGAATGAAGAAGAGCAAAACAATT.................................................................................AACAACGAACTGAATCCAATCTGGAATGAGCATTTCGAGTTTGTAGTTGAAGATCCATTGACACAACACTTGGTGATAAAGATCTATGATGATGAAGGGCTTCAAGCAGCTGAACTAATTGGATGCGCACATGTTCGTTTGAATGAGCTTGAGCCTGGTAAAGTGAAGGATGTTTGGCTGAAGTTGGTGAAAGATTTGGAGATCCAGAGAGACCAAAAGAATAGGGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGGAGCTATTATATTGTCCTTATGGCATGACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264033" ref_strand="+" ref_description="SGN-E264033 [cLEG-64-L6]">
      <seq>tggattttacgcttaaagtggttggtggtgacatgacagcaatacctggcatttctgatgcaattgagggtaccatccgcgatgccattgaagactctatcatatggccagtccgaaaaattattcccattttgcctggggattatagtgaccttgaactgaaacctactggagtattggaggtgaaacttgttcaagcaaaagagttaacaaacaaggacatcattggtaaatctgatccttttgctgagttatatgtacgccctgtacgagatagaatgaagaagagcaaaacaattaacaacgaactgaatccaatctggaatgagcatttccagtttgtagttgaagatccattgacacaacacttggtgataaagatctatgatgatgaaaggcttcaagcagctgaactaattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="109250" stop="106865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108950" g_stop="108883" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108882" i_stop="108233" i_length="650">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108232" g_stop="108153" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="148" r_length="80" r_score="0.887"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108152" i_stop="107522" i_length="631">
            <donor d_prob="0.726" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107521" g_stop="107371" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="299" r_length="151" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107370" i_stop="107290" i_length="81">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.445" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107289" g_stop="107165" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="424" r_length="125" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E264033" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108950" e_stop="108883"/>
          <exon e_start="108232" e_stop="108153"/>
          <exon e_start="107521" e_stop="107371"/>
          <exon e_start="107289" e_stop="107165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTTACGCTTAAAGTAATTGGTGGTGACATGACAGCAATTCCTGGCCTTTCTGATGCAATTGAGGTTTGGGCGAACTCTTACCACTAAATCTGTTTCTCTGTTTGATGTGGATGTAATTGTTCTTTGATAAAGTTGATGAGATGTAATGAAGGCCTACTGATGCCATGGATATTTGGCTGGCGTAGCCAAGCCTTATTTTGTTTCCCCTTATTCTCTCTCAGAAGAGAAACGGAAGGAACAGAAAGAAGTAAAAATTTTGAAGTAGTGGCTTAGTGTTATAACTACAAGGATAGGGTGTCTTTGTAGTGGTTAACTTCATCCTTGTTTAGGAAATCCGGGAGCTTGATTCACGACATGTTAACAAGATAAAACTATTTCTCATGTTTCTTTGGTAAACATTCTATGTTGTCTTGAACTTGCCTAAAACTTCTGTATTTCAATATGGATAACGGTATTTACTTGAAAAATGAAATGGCACATACTTTATGAGAATCAAGGAGTGTTGTGTGAAAATTTTCGAACAACAATTTGTTTCTTAGTGCATTCTTAGGACTATTCTCATTTGAGAAAAGAGAGGAACAACGAATTTGCTGCTTTGAGTTGTTTGCCTGAACTTGAATTTTTTTTTATGCAGTCATAAAATAGAAAGCTTAGCAAATGTTAGTTATGATTTACTACACTCTAGGTGTACTAAAATGACTTTATTTCTCCAGGGAACCATCCGGGACGCTGTTGAAGACTCTATCACATGGCCAGTTCGAAAAGTTATTCCCATTTTACCTGGGGATTATAGGTATTGATAATGACAATGATGAATTCTTTGAACAATCTTGGTTTCACTGATCCACTTTATCTTTGGCCTGCCCCAATCTTGGTTCAAGTCGTTGGACCTCGGAAGGACCTTAGAATACTCCCTCCATTCCAACTTGTTTACCATTTTAGTCCGTTTAAAAAGGAATTCCTCTTTCCTTTTTTAGTAACTCTTTAACTCTAACTTTCCACGTGACATCTATAAGACCACAAGATCAAAGAACATTTGGATACATTCTATGTATCTTTAATTTAAGACCACATGATTCGAATGTTTTCTTTTACTTTCTTAAACTTCGTTCCAAGTCAAAACCAAGCAAACTAATTGAAACGAAGGGAGTACAAGATTTCCAAAAGCAGAATTAGGACTAAGATTTGAAGAGTAGTCCCCTCAACTTGTGTCGGACTTCCATCCATTTTGCGTTGAACTAGGAAAGTCAAAACGTTATGTCATGCAACTACGTATATATCTCATGTTCATATCGGAGCTGTAAAAGAAATTTTTCAGTGGATCATTTTGCATATGTATGTTAACTGAAAAAGACAAGTTTAACATTTAGATTTTGATTGGCAACTGCTTAATCCTTATTGATATCTATTTTCTTGTTTACCAGTGACCTTGAACTGAAGCCTACCGGAGTATTGGAGGTGAAACTTGTTCAAGCAAAGGAGTTAACAAATAAAGACATCATTGGAAAATCTGATCCTTTCGCTGTATTATATGTACGCCCTCTACGAGACAGAATGAAGAAGAGCAAAATAATTGTAAGTTATCTCTATTTCTCTGGAAAAGTTTCTTTAATTCATTCGATCAAGTTAAGATTGAAGTAAGAATCTTTATTTCAGAACAACGATTTGAACCCAATTTGGAATGAGCATTTTGAGTTTGTAGTCGAAGATCCATTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCAGCTGAACTAATTGGATG</genome_strand>
        <mrna_strand>TGGATTTTACGCTTAAAGTGGTTGGTGGTGACATGACAGCAATACCTGGCATTTCTGATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCATCCGCGATGCCATTGAAGACTCTATCATATGGCCAGTCCGAAAAATTATTCCCATTTTGCCTGGGGATTATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTTGAACTGAAACCTACTGGAGTATTGGAGGTGAAACTTGTTCAAGCAAAAGAGTTAACAAACAAGGACATCATTGGTAAATCTGATCCTTTTGCTGAGTTATATGTACGCCCTGTACGAGATAGAATGAAGAAGAGCAAAACAATT.................................................................................AACAACGAACTGAATCCAATCTGGAATGAGCATTTCCAGTTTGTAGTTGAAGATCCATTGACACAACACTTGGTGATAAAGATCTATGATGATGAAAGGCTTCAAGCAGCTGAACTAATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709874" ref_strand="+" ref_description="SGN-E709874 [FA53CA12]">
      <seq>cggttttagtgaatctcaagatgtaagttttttcaagaattcatcttttaggaaaaccccataagaagaaaactccaaaaacagattcaaaatctcaccttttttttagatcttttcgaattttttcagtttattagcttatagaaatcattgaacaaggaagaggggatttaagaaaaagtgggataaaaatgtcatttgttttaggggttgtgtttggaatagcatttggacttgctataatagttgcttttgtgaaatctgaaaatgctagatccaaacagcgtactgatctggctagtggaattgctgcatttgctagaatgacagtggaagattcaagaaaaatctttacaccagaacaatacccttcttgggttgttttctcaaatcagcaaaagttggcatggcttaattctcatcttgaaaagatctggccgtatgtggatgaggcagcatcagaactagtgaagtcaagtgttgagccaattttggaacaatataggcctgtgattttggcgtctttgaaattttccaagttcactcttggtacagttgctccacaatttacagggatttctattattgaagatggaaatgagggtattactatggaattagagatgcaatgggatgggaatccaagcataatactcgatatcatgacttatgttggtgtagcattacccagtgcaggtgaaaaacatcgcgtttactggtattttcaggctcatcttcagggccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="112859" stop="109101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112561" g_stop="112266" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="112169" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112168" g_stop="112064" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="401" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112063" i_stop="111348" i_length="716">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111347" g_stop="111297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="452" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="111149" i_length="148">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111148" g_stop="111028" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="573" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111027" i_stop="110236" i_length="792">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110235" g_stop="110114" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="696" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110113" i_stop="109452" i_length="662">
            <donor d_prob="0.714" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109451" g_stop="109401" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="748" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E709874" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112561" e_stop="112266"/>
          <exon e_start="112168" e_stop="112064"/>
          <exon e_start="111347" e_stop="111297"/>
          <exon e_start="111148" e_stop="111028"/>
          <exon e_start="110235" e_stop="110114"/>
          <exon e_start="109451" e_stop="109401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTAGTGAATCTCAAGATGTAAGTTTTTTCAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTGGTTAGTCAACTAAAGTCTTTGTTTTTTTTTTAACTTCAATTTTTTTGGATTTTTTTTAATTTTGTATTTATGTTGTTTTTTTGGTTGAATTGTGAAGGCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAGGTGAAGTCTTTAACTTTTTATGTATTTGGTAAGTTGTAGAGGTGAAGTCAGAATTTTTAGTCTATATGGGTTCTAGACCACAGTTCTTTTTGCTTTGTTGGGTTTCTGAAAATTATACACTCACCATTTTTGAAGAGTCTAGCAATATTGACTGAAAAGACTATTTTTGTATCTTATAATATTAATATATTGTTAAACCAAAGCTACTGGATTTTGTGGTAGTTTTAGCTAAAGCAATGTCATTTATCATAAATTTGTAAACTTATTTTCTGGAAAATGTTTTTCGTGTTTAGTTAGAGAATGGAATTCTTTTTCTGGGAGAAGGACATTTATTGAAGATTGAATAAGCAAATCGGATAGTGTTTTGGTGAAAAATATTCGAGTAGTAAAGATTGATAATAATGTCTATATGTTGAGATAATTGTTTGCTCCTTTTTGGTGGAAAATATCTTCACAAAATATATGTTCTAGCAGCCAAAATCAGAAAAAATGAGATTACAAACACACCGTTAATGTCCTTATCTGTTTTTGGAGCACATAGTGACCATATAACATCGTTGAGATTAAATTTGTGCATCGTGTTTCAAATTGTGGTCTTTGGTTGCAAGACTTTCCCTTTATGGACTTTGTTTAATTTCTATCTAGAATACATGTTGTGGTTTAGTTTGTTGAGGGCAAAAAATGACCTTGTTAATTTTTCAATTTTGTTCTTACAGTTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAGGTTAGGGGTTCAATGTCTGTACATAGTTTGGTTTTCCACTCTATTGCGATTCTGCAATTTTCCATTTCCCCCTTTTTTTGGTTCTAATTTGTGATGTTGGACTTCTTTGTTGCTAATTGAGTCGGTATCGGTATATATGGTCATTCAGGCAGCATCAGAACTAGTGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGTGATTTTGGCGTCTTTGAAATTTTCCAAGTTCACTCTTGGTACAGTTGCTCCACAATTTACAGGTTAGTAGACGATGACTGGCGTAACATGTCTCAAAGCTCTTGCATATTGTACTACCTTAGAGTTTTAGGAGTCACTTATACATATGAACAAACTTATCAGTCCTCTCGGTCTTCATGGCATGCTTATGTTTGGAGTAGCATAACTGTTATGCGGAATTTGATATAATACGAGAAAATATAAACGCGAAAACCAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGGGGGAGCAGTTTTATTATGGAGAGGCAAGAACAGAATTACAGAATAGGATTTGTCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAAAAGGCTTGGGCCCAACATACAGAATTGACAGATAATTAAGGGCCCAATACAACAATATTGTATACCGTCTGGCCGGGGGCGTCTCCGCGCCCCCCGGACCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCGGACTCGCTGACCGGGCAGCGAGACCCCTGTCCTTTCCGGTTGTAACGGGTTTGATTCAAGGCATTCAACAATAACATTTCCCTGCACGGACACCACCGCCATCTAAAAAAATGGCATAACATTTTCCTGCCATTTATAGCCTCTTGAGATGTCAAAATGTGACAAATAATTTGAGACAGGCTGGGGTATAAAAGATATTCAATCCTCAAAGAGAAATCTTATCATCTCGTATCAGTTGATCCTTAATAAAAGAAACTGCTTGTGAGGATGACTATTGTTACATTTAACAATTGCTTGATCTCATATATATGCCACTGCAGGGATTTCTATTATTGAAGATGGAAATGAGGGTATTACTATGGAATTAGAGATGCAATGGGATGGGAATCCAAGCATAATACTCGATATCATGACTTATGTTGGTGTAGCATTA-CCAGTGCAGGTAATTAGTTTCACCATATGTTGCCCGGACTCTCCAAAAATGTAGCCGCACCCGTGTCGGATTCTCCAACGTTGCACTACTTTTGGAGTATCTGGCACGCACCCGTCGACATTTTTTGAAGAATCCGAACAACATACTTTCACCTCAGAGCTGTGACACATACTTTAACTGCTTCACATGATATTTCTGCTGAGATGCAAATGTTTCTGTTATCTCTTTGAATACTCAAATTGAAGAACCCACTGGTATTACATGATGTCCTCAAGCCTGCGTCTATTGTTTCTGAAAGAGCTTGTACTTATCGAATATGTTTTCTATAAGAGCTTGTTGAAATGGGAACAAACAACTGTTTCAGCTTGACTAGTCTGTATTTGTGGCTTACACTTGCTAGTTATCGCATATGATTTTCATGGACATGCTTGTGCTTTTGTGTTTTTCTTGGGCTGAGCACAAAATGAAAAGTTAATGTCATTTTATTCCCTGTGATACGTCCTTAATAGTAATCTAGAAGAGTTGCACGGTTTAAGAGTGAATAATTGAAGACGCCAGTAATTTATCCACACAAGTTTATATTTTGGTTCCTGAAATATTTGTATCTTGCTATGGTCAAACTCTTATGAATCTGATTTTAACTTTGTGATTATTGTTCTCCTTTCATTTAGGTGAAAAACATCGCGTTTACTGGTATTTTCAGGCTCATCTTCA-GGCCACTT</genome_strand>
        <mrna_strand>CGGTTTTAGTGAATCTCAAGATGTAAGTTTTTTCAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTG.................................................................................................GCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAG....................................................................................................................................................GCAGCATCAGAACTAGTGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGTGATTTTGGCGTCTTTGAAATTTTCCAAGTTCACTCTTGGTACAGTTGCTCCACAATTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTATTATTGAAGATGGAAATGAGGGTATTACTATGGAATTAGAGATGCAATGGGATGGGAATCCAAGCATAATACTCGATATCATGACTTATGTTGGTGTAGCATTACCCAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAACATCGCGTTTACTGGTATTTTCAGGCTCATCTTCAGGGCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456690" ref_strand="+" ref_description="SGN-E456690 [cSTS-30-C8]">
      <seq>caagaattcatcttttaggaaaaccccataagaagaaaactccaaaaacagattcaaaatctcacctttttttagatcttttcaacatttttcagtttattagcttacaaaaatcactgaacaaggaagaagggattcaagaaaaagtggaataaaaatgtcatttgttttaggggttgtgtttggaatagcatttggacttgctataatagttgcttttgtgaaatctgaaaatgctagatccaaacaacgtactgatctggctagtggaattgctgcatttgctagaatgacagtgggagattcaagaaaaatctttacaccagaacaatatccttcttgggttgttttctcaaatcaacaaaagttggcatggcttaattctcatcttgaaaagatctggccatatgtggatgaggcagcatcagaactagtaaagtcaagtgtggagccaattttggaacaatatangcctgtgattttggcgtcgttaaagttttcaaagttcactcttggtacagttgctccacaattcacaggaatttctattattgaagatggaagtgagggtattactatggaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="112828" stop="109888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112528" g_stop="112266" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="112169" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112168" g_stop="112064" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="367" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112063" i_stop="111348" i_length="716">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111347" g_stop="111297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="418" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="111149" i_length="148">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111148" g_stop="111028" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="539" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111027" i_stop="110236" i_length="792">
            <donor d_prob="0.872" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110235" g_stop="110188" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="587" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E456690" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112528" e_stop="112266"/>
          <exon e_start="112168" e_stop="112064"/>
          <exon e_start="111347" e_stop="111297"/>
          <exon e_start="111148" e_stop="111028"/>
          <exon e_start="110235" e_stop="110188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTGGTTAGTCAACTAAAGTCTTTGTTTTTTTTTTAACTTCAATTTTTTTGGATTTTTTTTAATTTTGTATTTATGTTGTTTTTTTGGTTGAATTGTGAAGGCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAGGTGAAGTCTTTAACTTTTTATGTATTTGGTAAGTTGTAGAGGTGAAGTCAGAATTTTTAGTCTATATGGGTTCTAGACCACAGTTCTTTTTGCTTTGTTGGGTTTCTGAAAATTATACACTCACCATTTTTGAAGAGTCTAGCAATATTGACTGAAAAGACTATTTTTGTATCTTATAATATTAATATATTGTTAAACCAAAGCTACTGGATTTTGTGGTAGTTTTAGCTAAAGCAATGTCATTTATCATAAATTTGTAAACTTATTTTCTGGAAAATGTTTTTCGTGTTTAGTTAGAGAATGGAATTCTTTTTCTGGGAGAAGGACATTTATTGAAGATTGAATAAGCAAATCGGATAGTGTTTTGGTGAAAAATATTCGAGTAGTAAAGATTGATAATAATGTCTATATGTTGAGATAATTGTTTGCTCCTTTTTGGTGGAAAATATCTTCACAAAATATATGTTCTAGCAGCCAAAATCAGAAAAAATGAGATTACAAACACACCGTTAATGTCCTTATCTGTTTTTGGAGCACATAGTGACCATATAACATCGTTGAGATTAAATTTGTGCATCGTGTTTCAAATTGTGGTCTTTGGTTGCAAGACTTTCCCTTTATGGACTTTGTTTAATTTCTATCTAGAATACATGTTGTGGTTTAGTTTGTTGAGGGCAAAAAATGACCTTGTTAATTTTTCAATTTTGTTCTTACAGTTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAGGTTAGGGGTTCAATGTCTGTACATAGTTTGGTTTTCCACTCTATTGCGATTCTGCAATTTTCCATTTCCCCCTTTTTTTGGTTCTAATTTGTGATGTTGGACTTCTTTGTTGCTAATTGAGTCGGTATCGGTATATATGGTCATTCAGGCAGCATCAGAACTAGTGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGTGATTTTGGCGTCTTTGAAATTTTCCAAGTTCACTCTTGGTACAGTTGCTCCACAATTTACAGGTTAGTAGACGATGACTGGCGTAACATGTCTCAAAGCTCTTGCATATTGTACTACCTTAGAGTTTTAGGAGTCACTTATACATATGAACAAACTTATCAGTCCTCTCGGTCTTCATGGCATGCTTATGTTTGGAGTAGCATAACTGTTATGCGGAATTTGATATAATACGAGAAAATATAAACGCGAAAACCAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGGGGGAGCAGTTTTATTATGGAGAGGCAAGAACAGAATTACAGAATAGGATTTGTCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAAAAGGCTTGGGCCCAACATACAGAATTGACAGATAATTAAGGGCCCAATACAACAATATTGTATACCGTCTGGCCGGGGGCGTCTCCGCGCCCCCCGGACCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCGGACTCGCTGACCGGGCAGCGAGACCCCTGTCCTTTCCGGTTGTAACGGGTTTGATTCAAGGCATTCAACAATAACATTTCCCTGCACGGACACCACCGCCATCTAAAAAAATGGCATAACATTTTCCTGCCATTTATAGCCTCTTGAGATGTCAAAATGTGACAAATAATTTGAGACAGGCTGGGGTATAAAAGATATTCAATCCTCAAAGAGAAATCTTATCATCTCGTATCAGTTGATCCTTAATAAAAGAAACTGCTTGTGAGGATGACTATTGTTACATTTAACAATTGCTTGATCTCATATATATGCCACTGCAGGGATTTCTATTATTGAAGATGGAAATGAGGGTATTACTATGGAATTAG</genome_strand>
        <mrna_strand>CAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTT-TTAGATCTTTTCAACATTTTTCAGTTTATTAGCTTACAAAAATCACTGAACAAGGAAGAAGGGATTCAAGAAAAAGTGGAATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAACGTACTGATCTG.................................................................................................GCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGGAGATTCAAGAAAAATCTTTACACCAGAACAATATCCTTCTTGGGTTGTTTTCTCAAATCAACAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCATATGTGGATGAG....................................................................................................................................................GCAGCATCAGAACTAGTAAAGTCAAGTGTGGAGCCAATTTTGGAACAATATANGCCTGTGATTTTGGCGTCGTTAAAGTTTTCAAAGTTCACTCTTGGTACAGTTGCTCCACAATTCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTCTATTATTGAAGATGGAAGTGAGGGTATTACTATGGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709223" ref_strand="+" ref_description="SGN-E709223 [FA51AC05]">
      <seq>ccggtttttagcgaatctcaagatgcaagttttttcaagaattcctctttttaggaaaaccccataagaagaaaactccaaaaacagattcaaaatctcaccttttttttagatcttttcgaattttttcagtttattagcttatagaaatcattgaacaaggaagaggggatttaagaaaaagtgggataaaaatgtcatttgttttaggggttgtgtttggaataccatttggacttgctataatagttgcttttgtgaaatctgaaaatgctagatccaaacagcgtactgatctggctagtggaattgctgcatttgctagaatgacagtggaagattcaagaaaaatctttacaccagaacaatacccttcttgggttgttttctcaaatcagcaaaagttggcatggcttaattctcatcttgaaaagatctggccgtatgtggatgaggcagcatcagaactagcgaagtcaagtgttgagccaattttggaacaatataggcctgcgattttggcgtctttgaaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="112858" stop="110765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112563" g_stop="112266" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="112169" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112168" g_stop="112064" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="404" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112063" i_stop="111348" i_length="716">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111347" g_stop="111297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="455" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="111149" i_length="148">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111148" g_stop="111065" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="539" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E709223" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112563" e_stop="112266"/>
          <exon e_start="112168" e_stop="112064"/>
          <exon e_start="111347" e_stop="111297"/>
          <exon e_start="111148" e_stop="111065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTTTAGTGAATCTCAAGATGTAAGTTTTTTCAAGAATTCATC-TTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTGGTTAGTCAACTAAAGTCTTTGTTTTTTTTTTAACTTCAATTTTTTTGGATTTTTTTTAATTTTGTATTTATGTTGTTTTTTTGGTTGAATTGTGAAGGCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAGGTGAAGTCTTTAACTTTTTATGTATTTGGTAAGTTGTAGAGGTGAAGTCAGAATTTTTAGTCTATATGGGTTCTAGACCACAGTTCTTTTTGCTTTGTTGGGTTTCTGAAAATTATACACTCACCATTTTTGAAGAGTCTAGCAATATTGACTGAAAAGACTATTTTTGTATCTTATAATATTAATATATTGTTAAACCAAAGCTACTGGATTTTGTGGTAGTTTTAGCTAAAGCAATGTCATTTATCATAAATTTGTAAACTTATTTTCTGGAAAATGTTTTTCGTGTTTAGTTAGAGAATGGAATTCTTTTTCTGGGAGAAGGACATTTATTGAAGATTGAATAAGCAAATCGGATAGTGTTTTGGTGAAAAATATTCGAGTAGTAAAGATTGATAATAATGTCTATATGTTGAGATAATTGTTTGCTCCTTTTTGGTGGAAAATATCTTCACAAAATATATGTTCTAGCAGCCAAAATCAGAAAAAATGAGATTACAAACACACCGTTAATGTCCTTATCTGTTTTTGGAGCACATAGTGACCATATAACATCGTTGAGATTAAATTTGTGCATCGTGTTTCAAATTGTGGTCTTTGGTTGCAAGACTTTCCCTTTATGGACTTTGTTTAATTTCTATCTAGAATACATGTTGTGGTTTAGTTTGTTGAGGGCAAAAAATGACCTTGTTAATTTTTCAATTTTGTTCTTACAGTTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAGGTTAGGGGTTCAATGTCTGTACATAGTTTGGTTTTCCACTCTATTGCGATTCTGCAATTTTCCATTTCCCCCTTTTTTTGGTTCTAATTTGTGATGTTGGACTTCTTTGTTGCTAATTGAGTCGGTATCGGTATATATGGTCATTCAGGCAGCATCAGAACTAGTGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGTGATTTTGGCGTCTTTGAAATTTTCC</genome_strand>
        <mrna_strand>CCGGTTTTTAGCGAATCTCAAGATGCAAGTTTTTTCAAGAATTCCTCTTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATACCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTG.................................................................................................GCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAG....................................................................................................................................................GCAGCATCAGAACTAGCGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGCGATTTTGGCGTCTTTGAAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426375" ref_strand="+" ref_description="SGN-E426375 [STM-46-B9]">
      <seq>caagaattcatcttttaggaaaaccccataagaagaaaactcttataacagattcaaaatctcacctttttttagatcttttcaacatttttcagtttattagcttacaaaaatcactgaacaaggaagaagggattcaagaaaaagtggaataaaaatgtcatttgttttaggggttgtgtttggaatagcatttggacttgctataatagttgcttttgtgaaatctgaaaatgctagatccaaacaacgtactgatctggctagtggaattgctgcatttgctagaatgacagtgggagattcaagaaaaatctttacaccagaacaatatccttcttgggttgttttctcaaatcaacaaaagttggcatggcttaattctcatcttgaaaagatctggccatatgtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="112828" stop="110999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112528" g_stop="112266" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="112169" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112168" g_stop="112064" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="367" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112063" i_stop="111348" i_length="716">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111347" g_stop="111299" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="416" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E426375" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112528" e_stop="112266"/>
          <exon e_start="112168" e_stop="112064"/>
          <exon e_start="111347" e_stop="111299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTGGTTAGTCAACTAAAGTCTTTGTTTTTTTTTTAACTTCAATTTTTTTGGATTTTTTTTAATTTTGTATTTATGTTGTTTTTTTGGTTGAATTGTGAAGGCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAGGTGAAGTCTTTAACTTTTTATGTATTTGGTAAGTTGTAGAGGTGAAGTCAGAATTTTTAGTCTATATGGGTTCTAGACCACAGTTCTTTTTGCTTTGTTGGGTTTCTGAAAATTATACACTCACCATTTTTGAAGAGTCTAGCAATATTGACTGAAAAGACTATTTTTGTATCTTATAATATTAATATATTGTTAAACCAAAGCTACTGGATTTTGTGGTAGTTTTAGCTAAAGCAATGTCATTTATCATAAATTTGTAAACTTATTTTCTGGAAAATGTTTTTCGTGTTTAGTTAGAGAATGGAATTCTTTTTCTGGGAGAAGGACATTTATTGAAGATTGAATAAGCAAATCGGATAGTGTTTTGGTGAAAAATATTCGAGTAGTAAAGATTGATAATAATGTCTATATGTTGAGATAATTGTTTGCTCCTTTTTGGTGGAAAATATCTTCACAAAATATATGTTCTAGCAGCCAAAATCAGAAAAAATGAGATTACAAACACACCGTTAATGTCCTTATCTGTTTTTGGAGCACATAGTGACCATATAACATCGTTGAGATTAAATTTGTGCATCGTGTTTCAAATTGTGGTCTTTGGTTGCAAGACTTTCCCTTTATGGACTTTGTTTAATTTCTATCTAGAATACATGTTGTGGTTTAGTTTGTTGAGGGCAAAAAATGACCTTGTTAATTTTTCAATTTTGTTCTTACAGTTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATG</genome_strand>
        <mrna_strand>CAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCTTATAACAGATTCAAAATCTCACC-TTTTTTTAGATCTTTTCAACATTTTTCAGTTTATTAGCTTACAAAAATCACTGAACAAGGAAGAAGGGATTCAAGAAAAAGTGGAATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAACGTACTGATCTG.................................................................................................GCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGGAGATTCAAGAAAAATCTTTACACCAGAACAATATCCTTCTTGGGTTGTTTTCTCAAATCAACAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCATATGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435255" ref_strand="+" ref_description="SGN-E435255 [STM-61-A22]">
      <seq>gacaggtttccattttggctcggaactcttgaatacctacaggtccttatattaaagtcgaacaagttccatggacctataagtacgtgtcagactaagttttgctttcccaagttgcgaatttttgatctttctcgtaatgatttcagtggctcatttcctgcaaaagtttttggaaacttcaaggcaatgatcaaattagatggtgaagacgcaggaaatatcatgtacatggaatctatgtcgaattcgcaatttgtcacagcctatgaggattcagtgagtttggtaatcaaagggcaggatattgagctacaaagaatcagcacaattacgacaaccatagatctctcaagcaaccattttgaaggtgtgattccgaaaacactaaaggatctcagatcactttggctactcaatttatctcataacaatctcagaggagatattccaatgaaattaggacaattgagtatgcttgaagctttagatctctcttggaatcggctcactggaaagattccacaggaattgacaagaataaactttctcgccttcttaaacctctctcaaaatcatctcgtcggaccaattcctcaaggtcggcaattcaacacatttgaaaatgactcatatggtggcaaccttgattttatgtggtggtcctttaacaaagaaatgtggaacgagtgattcatcgcatgttcctcaancattggagtccgaagaagaaggcgagtcatatttttttagtggatttactgggaatcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="120977" stop="113893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120677" g_stop="119913" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E435255" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120677" e_stop="119913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACATTTCCAGCTTGGCTCGGAATTCTTCAAGAGCTGCAGGTCCTTATATTAAAGTCGAACAAGTTCCATGGACCTATAAGTATGTGTCAGACTGAGTTTTGCTTTCCCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCACTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACAGAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTAATCAAAGGGCAGGATTTTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGAAGGTGTCATTCCGAAAACACTAAAGGATCTCAGGTCACTTTGGCTACTCAATTTATCTCATAACAATCTCATAGGTCATATTCCAATGGAATTGGGGCAATTGAATATGCTTGAAGCTTTAGATCTCTCTTGGAATCGGCTGACTGGAAAGATTCCACAGGAATTGACAAGACTGAACTTTCTGGCCATCTTAAACCTCTCTCAAAATCATCTCATGGGACCAATTCCTCAAGGTCGACAGTTCAACACATTTGAAAATGACTCATATGGTGGCAACCTTGA-TTTATGCGGTGTTCCTTTAACTAACAAATGTGGAACGAGTGATTCATCGCATGTTCCTCAACC-----A----GAAGATAAAGACGAGTCATATTTTTTCAGTGGATTTACTTGGGAATCAGTA</genome_strand>
        <mrna_strand>GACAGGTTTCCATTTTGGCTCGGAACTCTTGAATACCTACAGGTCCTTATATTAAAGTCGAACAAGTTCCATGGACCTATAAGTACGTGTCAGACTAAGTTTTGCTTTCCCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCATTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACGCAGGAAATATCATGTACATGGAATCTATGTCGAATTCGCAATTTGTCACAGCCTATGAGGATTCAGTGAGTTTGGTAATCAAAGGGCAGGATATTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGAAGGTGTGATTCCGAAAACACTAAAGGATCTCAGATCACTTTGGCTACTCAATTTATCTCATAACAATCTCAGAGGAGATATTCCAATGAAATTAGGACAATTGAGTATGCTTGAAGCTTTAGATCTCTCTTGGAATCGGCTCACTGGAAAGATTCCACAGGAATTGACAAGAATAAACTTTCTCGCCTTCTTAAACCTCTCTCAAAATCATCTCGTCGGACCAATTCCTCAAGGTCGGCAATTCAACACATTTGAAAATGACTCATATGGTGGCAACCTTGATTTTATGTGGTGGTCCTTTAACAAAGAAATGTGGAACGAGTGATTCATCGCATGTTCCTCAANCATTGGAGTCCGAAGAAGAAGGCGAGTCATATTTTTTTAGTGGATTTAC-TGGGAATCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400577" ref_strand="+" ref_description="SGN-E400577 [PPC-1-D1]">
      <seq>gaaacttcaaggcaatgatcaaattagatggcgaagacacaggaaatatcaagtacatggaatctatgttgaatttgctatttgtcacatcgtatgaggattcagtgagtttggtaatcaaagggcaggatattgagctacaaagaatcagcacaattatgacaaccatagatatctcacgcaaccattttgaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="120802" stop="120005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120502" g_stop="120305" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E400577" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120502" e_stop="120305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACAGAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTAATCAAAGGGCAGGATTTTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGAAGGTG</genome_strand>
        <mrna_strand>GAAACTTCAAGGCAATGATCAAATTAGATGGCGAAGACACAGGAAATATCAAGTACATGGAATCTATGTTGAATTTGCTATTTGTCACATCGTATGAGGATTCAGTGAGTTTGGTAATCAAAGGGCAGGATATTGAGCTACAAAGAATCAGCACAATTATGACAACCATAGATATCTCACGCAACCATTTTGAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465444" ref_strand="+" ref_description="SGN-E465444 [cPRO-21-K1]">
      <seq>gacaggtttccattttggctcggaactcttgaatacctacaggtccttatattaaagtcgaacaagttccatggacctataagtacgtgtcagactaagttttgctttcccaagttgcgaatttttgatctttctcgtaatgatttcagtggctcatttcctgcaaaagtttttggaaacttcaaggcaatgatcaaattagatggtgaagacgcaggaaatatcatgtacatggaatctatgtcgaattcgcaatttgtcacagcctatgaggattcagtgagtttggtaatcaaagggcaggatattgagctacaaagaatcagcacaattacgacaaccatagatctctcaagcaaccattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="120977" stop="120010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120677" g_stop="120310" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E465444" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120677" e_stop="120310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACATTTCCAGCTTGGCTCGGAATTCTTCAAGAGCTGCAGGTCCTTATATTAAAGTCGAACAAGTTCCATGGACCTATAAGTATGTGTCAGACTGAGTTTTGCTTTCCCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCACTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACAGAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTAATCAAAGGGCAGGATTTTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGA</genome_strand>
        <mrna_strand>GACAGGTTTCCATTTTGGCTCGGAACTCTTGAATACCTACAGGTCCTTATATTAAAGTCGAACAAGTTCCATGGACCTATAAGTACGTGTCAGACTAAGTTTTGCTTTCCCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCATTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACGCAGGAAATATCATGTACATGGAATCTATGTCGAATTCGCAATTTGTCACAGCCTATGAGGATTCAGTGAGTTTGGTAATCAAAGGGCAGGATATTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="123769" stop="125176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124069" g_stop="124876" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124069" e_stop="124876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACACGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAATCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241550" ref_strand="-" ref_description="SGN-E241550 [cLED-28-L6]">
      <seq>cagcatttgtttgacttgaattagtcatttttttctgtcacaaatggcagataaattaagtatttaaaatattaacaataaaaaacaattctttacacaaactgtttctgattaaacgataaagtttttatgttcttttaatcgttaatcgaataaattttaaaaattcaagcagaatagaaacccaaccataaaggttttaatctccagaaacctcaaatacaaaaactgttaaatttcttaagattgttataaaattgttattcttacaataacttgtatttatgaagttaatgaatagaaatagaaacaagatgaagcagaaaaaatttaaaacagaagaattaatccgagtccacagaaactactgtgtgtccttaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="143264" stop="128918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142964" g_stop="142717" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142716" i_stop="130632" i_length="12085">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130631" g_stop="130627" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="256" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130626" i_stop="129351" i_length="1276">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129350" g_stop="129218" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="387" r_length="131" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E241550" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241550" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="142964" e_stop="142717"/>
          <exon e_start="130631" e_stop="130627"/>
          <exon e_start="129350" e_stop="129218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTTGTTTGACTTGAATTAGTCTTTTTTTTTCTGTCACAAATGGCAGATAAATTAAGTATTTAAAATACTAACAGTAAAGAACAAATCTTTACACAAACTGTTTCTGGTTTAACGATAAAGTTTTTATGTTCTTTTAATCGTTAATCGAATGAATTTTAAAAATTCAAGCAGAGTAG-AA---AACCATAAAGGTTTTAATCTCCAGAAACCTCAAATACAGAAACTGTTAAATTTCTTAAGATTGTTATTCTTACAACAACTTGTATTTATAAAGTTAATAAACAAAAACAGAAACAGAAATAAGATGAAGCAGAAAATAATATAGAATACAAGAATTAATCCGAGTCCACAGAAACTACTGTGTGTCCTTAAGAAATTTAATCCCCTCACTGTACCCAAGGTTATGGATTAATTTCTCCCAAGATAAAACGGATTAAACCTGTTAAAGAAATAGCGGTACCTCAAACTTCTTTAACTTCAACGAACTTAAGAACAGCAACAAGTCACACAGACTCAGTCGATCGACACTTTGATTTTATTTGAGAGAAAAATAAATGCAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTAGTCTGCTTCCTGGAAGTATTCATCCCAATAGCATCCTCTACCAACTTCATCATCTGCAGACACTAAACCTTGCCTACAATGACGTTTATCCTTCTTCGATCCCACATAACATTGGCGGATTGACGAATTTGAGGCATCTCAACCTTTCTGATGCTTGGTTTCAAGGGAAAATCCCAACAGAAATCTCATACCTTTCCAATTTGGTTTCACTTGATCTTTCTAATAGTTATGCATTAGAACTTGATGAGAGAACATTTGAAACAATGCTTCAAAACTTGACAAATCTGGAGGTACTTTCTCTCTCTCAAGTCATCATCTCATCTCCACTACCTGTGAACATTTCTTCTTCCTTAAGGCACCTGGATCTTAAACATACTAATCTGCTAGGTGTTCTCACAAAGAGTTCTTTCCTTATACCAAACAGCTTGGAAACACTCAAATTGAGTGGGAATCTTCGTCTCGAAGGAGTTTTACCAAAGAGAAACACTCTGTTAACGGAGTTGGATATATCGTACACAGGCAGGTGAGATACCTGATTCAATTGGCAACTTCAGTTCCTTGAAATACTTAAACCTCCAACAATGTCAATTCTCTGGTTCCATTCCTGATTCCATAGGCAACCTAACACTAATTACGGAGTTAGATTTATCTTATAATCATTTCACTGGCCGTATTATTCCTTCCACAATCTCTAAATTCAAGCACCTAACGCGTTTGGATCTTTCATCTAACTCCTTTTCAGGTGAAATTCCAGATGTTTTCTCTAACCTCCAAAAGCTACGTTATTTAGATTTTTTTAATAACAGCTTCATCGGTCCATTTCCTGCTTCAATATTAAGTTTGACACGTCTTGAACACTTAGGATTGTCGAGTAATTCCCTATCTGGCCCACTGCCTAGCAACACAAGCATGCTTCCAAAACTAATCCATCTAAATTTGTCATACAACTCACTGAATGGTACCATACCATCTTGGGTGTTTAGCCTACCTTTGCTATATTCAGTGTCCCTCCAACATAACCGATTCAGAGGACTAGCCGATGAAGTGATCAAAACAAACCCAACATTAAAAGAACTGCATTTAAGCAATAATCAACTCAGTGGTTCTTTTCCTCAATCACTTGCGAATCTCACAAACCTTGAAACCCTTGGAATTTCATCAAATAACATCACCGTTGATGAGGGAATGAATATCACCTTTCTTAGCCTATCATCTTTATTCTTATCATCTTGTCAACTGAAGCATTTTCCATACTTCTTGAGAAATGTAAACACACTTGTGTACTTGGATATTTCTAACAATAAGATTTCTGGTCAAATCCCTAACTGGTTTAGCGGCATGAGGTGGGACTCGTTGATTTTCTTAAACCTTTCTCATAATTCATTAACAGGCAACCTACCACAATTTCGTTACGATAACCTAGGGTATCTTGATCTGAAATTTAACTCCCTTCAGGGTCCACTACCTTCATCCATTTGTAACATGAGCAAACTTATGTTATTAGATTTATCACACAACTACTTAAGCAACTCAGTTCCACATTGCTTGGGAAGCATGGGTTTACTAACGGCATTGGACTTAAAAAGGAACAATCTCACAGTGAGTCTTCCTCCATTATGTGCAAAAAGCACTTCATTGAGTACCATTATCGTAAATGGTAATCAATTTGAATGACCTGTTCCTGTGTCATTGCTCAAGTGTTATGGTCTAGAAGTCCTTGATGTGGGGAACAATGCTATAAATGACACGTTTCCAGCGTGGCTCGGAATTCTTCAAGAGCTGCAGGTCCTTATATTAAAGTCAAACAAGTTCCATGGACCTATAAGTACGTGTCATACTGAGTTTTGCTTTACCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCACTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACATAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTTATCAAAGGGCAGGATTTGTAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTTTCAAGCAACCATTTTGAAGGTGTCATTCCGGAAACACTAAAAGATCTCAGCTCGCTTTGGCTACTCAATTTATCTCATAACAATCTTATAGGTCATATTCCAATGGAATTGGGGCAATTGATTACACTTGAAGCTTTAGATCTCTCCTGGAATCGGCTCACTGGAAAGATTCCGCAGGAATTGACAAGAATGAACTTTCTGTCCGTATTAAACCTCTCTCAAAATCATCTCATTGGACCAATTCCTCAAGGTCTACAGTTCAACACATTTGGAAATGACTCGTACGGCGGCAACCTTGATTTATGTGGTCCTCCTTTATCAAAACAATGTGGAACGAGTGATCCATCGCATGCTCCTCAACCATTGGAGGAAGAAGAAAAAGATGAAAGTGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGTTTTGGACTAGTTGTTGGAACTGTCATGTGGAGTCTCGTGTTTAAATATCGTAAGCCAGAATGGTTTGTGGAATTTTTCGATGGACTGATGCCTCACAAAAGAAGAAGGCCAAATAGGAGAGCTCAGAGACGACGGACTTAATGGAAGATTGAGAGCGCCAACTTGTCTTTGTTTTATTTTGTGGAATAATTATTGAACTGTTCTGTTTTTATCTGTTTTAAATTTTCTATTTGTTGCTTGCATATGTTAGAAACATAATAATTATATTTGTGTTATTTTAGTATCAATGGCTATTCAAGTTATGTTAGTCCGTTTCTGTTTCAAATTGACATAAGTGTTCTTCACAGCCACTCATTTGCCATGTTACTTAGATTTTTCATAAATGTCAACAGGTACATGTTGGATTCTTTAAAAGTCGTGTATTTTTTAAATTAACACATTTGAAGATCAACTCATATGGCACGAGTGATCCATCACATGTTCATCATCCACTGGAGTCCGAATACGAAGAAAAATCGTATTTTGCTACAGTTGTGGATTTGTTTGTTTGAACTGTCATGTGGAGTCTCATGTTTAAAGATGGTTAGCCAAAATGGTTTGTGGAATGGAATTTCTTTCATGATTTTGTTTTTCTTCTTAATTTGATCACTACACCTTTATATTGAGTCGAGGGTCTATGAAAACAGCACAAGAGAGGAATGATCATCACCAAGTTATTCAAAAAATAAAATTCCACACGGAGGAAATGGACGACTTAAATCATGTCTTTAATTATTGTTCATTTATTTCCTCACTTGACTTAGTCAAGCAATAGTTTCTCTCATTAGAAATTACTTACAACTTCTGCAGAATTTCACATCATTTTGCGTAACACACACTGCAGAGATAGTTAATGATTTCGGAATGAAACACAACATCTAAAAAAAATTAGGGCATAAGCTAAGTAGTATTATTTTGTTAAGTGTTCTCCGTTCTCTAATAAGTCTTGTGGAACACTACAAAATATGAGTAACAAATTGTTAGAAGTGAGTAGTACTCATCTTGTGATTCAATTGTTCATCATAATCTTTTTTTCCCCTCTAGTCTTTGTGGAAATTGGCTTAAAGTCTTACAAGTCTTCGTCACTTTTTTCCTTAGGTGGACTGAAATATTGATGGATTTTCCCTTAATATGAAAATTATTGTGTACCTAACAAGTTTGAAAATAGCAGAAGAGACGACTAATTACTAACTCGAGATATTGACCTTTTATGATTGTATAAATTTCATGGAAAAAATTCATAAAATTTTTATTGCATTCTTATAATTGGTTTCTCTTTCCTGAACGTACCCTAACTGTTCTCATGATTGGTTCAATGATATGTATTGACCTTTTATGATTATATAAATTCCGTGGGAAAATTACACTTAAATTTATTTCGTTCATACAACTTGGTTTTGCTTAATTATATTGTCCCTTCTTATCATATGGAAGATGAAATGGAGTAACATCATGTTTCTTTTAATTAACTTGGTCATACAATAGTTTGGACAAGGATGACTTAAATAGGAGTTCAAATTTCTACCTATCCATCTATACTATTTTTTAAAAATGTTAAATTATTATAATATCAGTAAAATTACTCACGCTTCGCGCGAAAATTTAGTATCATGAAATTTATAAAATAATACTTAAATCTATAAGTTATTAAAACTAAAACATTATATTATCTTACATACAAGATTACGTAGTAACAAACATTAAGAATGTAAAGAAATATGAAAATTATTTAGTCTTGTCATTTATCCTTAAGAACATAAGCAATAATTAATGACAGTAAAAAATACATACCAGAATCTGTAACATAAGCAATGGTATCAGTGAGCCAATCAATGAGAGTGAAGTGCACAAATATTAAATTGTGATCCCTCTATTTATAGGCAACAAAGGGTAGTGTGAACAAATATTTATTGTATCTTATCGAAACGGTTACAACTCTTTGGAAAAGTTGCAACCCTTCGAAAAAGTCACAATATTTCATAAAAGTCACAACTTTTAATAAAAGTCATAACTTTTCATAAAAGAAACAACTCTTCATTAAAATCGCAACTTTTCAACAAAGGCACGATGTTTCATAAAAGTCACAACTTTTCAAAAAAGTCAAAAATTTTCATAAAAGTTGTAACTCTACATAAAAACTGCAACTCTTCATTAAATTGCAACTTTTCATAAATTTCACAACTTTTCATTAAAGGGGAAGACTAGTTTTGTAAATAAGTAAATCAAAAGAGAATCTCGTTTGTGATAGCTAGCGCTACATAAGTGGGCCGAATGTTCTTTTTTATATAAATATATGAAATGATTTTCAACTTAAGAAACTCAATTTAGAATCTTTTCTATATTTTATAATATATTATATTTAATTTTTTTATTATTTTAAAGCATGGTGTACTACCTTAAAAATATGAACTCTATAATATAAATGTTAAATTATTATAATACTCCCAACTAAAAATTACTCAATTTAGTGTATCTTCTATATTATTTATTTAGTTAGTTATATTATATTAAAACATATATTTTTCATATTGAAGGATTGTGACTTTTTTCAAAAAATTGTGACGTGTCTAACTCTATTATAAAACTGAAAAAAATGTATGGACTCACATAGTACGTGACATAATAATATACATAATTGTTCTTTTTCCCATCGCTAGTCTTTGTGGAAATTGGCTTAAAAGAACAAAATTATTATATATTCTTTAAGTTGATGTTGTCCCATGCATAGAATAGTCAACAAAGTTACTTTACGAAATAGTGTTTAGTTAATTATTTACTTTATTTAATGTGGAGGTCGTTGCAATAATTAAGAAATGACTTTAGTTAATTATACCATCCTTTTGTACGTGACTATTTATTTTATTGATTTATTTATATCTTGACAATTATCATGAACTCATATATTTTAGTACTTTTACCTTTTTTATTCCTCTTTCTATTTTTATTTTTTCATTAATAAATATATCCTAAAGTCTACCAAATAGTAAATTTTTTTGCATTATACAAAATATATTTTTGGGTTTTAATAAAAAGATCAATGTGTATTCTTTAAATTCAAGCACTAGAATAAAAACAACGTTTAGCGGTAACAAATACACATTAATAAAAAGTGTTAAAAATCTTACCGGCATTGGTTAAGTATCATTAGATCCGATGTTGCTAAAGACTTTAGAGACATATACAAAGACTGTTAATTGCCGCTAAAAATACATATTAAACAACATTTAAATTTTAAACTATTATTGTTAATTAATTGCTTTTAAAGATCATTTAGCGAAATCAATATTATTTTAATATCATTATATTAACTTATCAAATTTAGCGCAACTATTTCAGTATCATTGTATTCATAGAATTTTGATTGTTCTTACAAATCTATAAGAATTTACATAGGATACTTAAATATATATGGATTGATTTGTAAGAAGAACACATCCTTCCTGTTATTTGCAGAAAACAAAAAATGGTCATGAGTCTGTTTTTCTATTATTCATTTCTGTGTTTTGTGTTGCTAATAAGTGAATGCTTTTCTTCTTCCTTTGATCATCATCATCTTTGCTCTCCTACTGAAGCTTCTGCTTTGATTAAGTTCAAACAATCCTTTCAAAATATGTCCGAAGAGTACTACAGAGATTGGTCTGATGGAGATTGTTCTCCAAAAACAAAGTCTTGGAATGAGAGTAGGGATTGCTGTAGTTGGGACGGAGTCACTTGTGACTTGTTAAACGGTCATGTTATCGGTTTAGACCTTAGTTGCAGTCAGATTGTTGTCACTTTTCATCCCAATAGCACCCTCTTCCAACTTCATCATCTCCACACACTAAACCTTGCTTACAATCACTTCAATTATTCTTCGATCCCACATAACATTGGCCGATTGGCGAATTTGAGGCATCTTAACCTTTCTGATGCTTGGTTTCAAGGGAAAATCCCAACGGAAATCTCATACCTTTCCAATTTGGTTTCACTTGATCTTTCTTATAGTTATGGATTACAACTTGATGAGAGAACATTTGTAACAATGCTTCACAACTTGACAAATCTGGAGCTACTTTCTCTCTCTGAAGTCAACATCTCATCTCCGATACCTCTCAATATTTCTTCTTCCTTAAGGTACTTGGATCTTGATAATACTAATCTGCGAGGTGTTCTCACAGAGAGCTTTTTCCATCTGCCAAACAGCTTGGAAACACTCAAATTGAGTAGTAATGATCTTCTCAAAGGAGTTTTTCCAAAGATCCACCGGAGAAACACTCTGTTAATGGAGTTGGATATTTCAGACACAGGCATCTCCGGTGAGCTGCCTGATTCAGTTGGCACCTTCAGTTCCTTGAATATCTTGAACCTCCAACGATGTCATTTCTCTGGTTCCATTCCTGATTCCATTGGCAACCTAACACAAATTACAGAGTTGGATTTCAGTCATAATAATTTCACAGGACATATTCCTTCCACAATCTCTAAATTGAAGCACCTCACAGGTTTACATCTTTCGTCCAACTCCTTTTCAGGTGAAATTACTGATGTTTTCTCTAACCTACAACAACTACGTTATTTATATCTTTTTAGAAACAGCTTCATCGGTCTATTTCCCACTTCAATTTTAAATTTGAGACGTCTTGAAAGATTAGACATGTCGAGTAATTCCCTATCTAGCCCACTACCTAAGAATGCGAGCATTCTTCAAAATCTAAATTATTTGGATTTGTCTTACAACTCACTGAATGGTACCATACCATCTTGGGTGTTTAGCCTACCTTTGCTATCTTCAGTGTCGCTCCATCATAATCGATTCAGAGGGATAGCTGATGAAGTGATCAAAACAAACCCAACATTAGAACGCCTCGATTTAAGCCATAATCAACTCAGTGGTTCTTTTGCTCAATCACTTGCGAATCTCAAAAACCTTTATTACCTTGACCTTTCATCAAATAAAATCACCAATGATATTACGGGAATCAATATCACTTTCCCTAGCCTGGGATTTTTGCATTTATCATCTTGTGAACTGAAGGATATTCCATACTTGTTGAGAAATGTAAAGACACTTGTGTACTTAGATATTTCTAACAATAAGATTTCTGGTCAAATCCCTAAATGGTTTAGCGGCATGAGGTGGGACTCGTTGCAGTTCCTAAACCTTTCTCATAATTCACTAACAGGCAACCTACCACGATTGCATTATTATACTCTACAGTATCTTGATCTGAAATTCAACTCCCTTCAGGGTCCACTACCTTCATCCATTTGTAACATGAGTTCGCTTATCTTATTAGATTTATCACGCAACAACATCAGTAACTCGATTCCAAGTTGCTTGGGAAGCATGGCTAATCTAACGGTGCTGGACTTAAGAAAGAACAATTTCACAGGTAGTCTTCCCACATTATGTGTCCACAGCACTTCATTGAGTACCATTGTCATAAATGGTAATCGATTTGAAGGACCTGTTCCTGTGTCGTTGCTCAAGTGTGAGTCTAGAAGTCCTTGATGTGGGGAACAATGCTATAAATGACACATTTCCAGCTTGGCTTGGATCTCTTGAAGAGCTGCAGGTCCTTGTATTAAAGTCGAACAAGTTCCATGGACCTATAAGTACTTGTCAGACTGAGTTTTGCTTTACCAAGTTGCGTATTTTTGATCTTTCTCGTAATAATTTCAGTGGCTCGCTTCCTGCAGAAGTTTTTGGAATCTTCAAGGCAATGATCAAATTAGATAACGAAGACACAGGAGAGATCAAGTACATGAGACTATCTGACACATCGTATGAGGATTCAGTGACATTGGTAATCAAAGGTCAGGATATTGAGCTACAAAGAATCAGCACAATTATGACAACCATAGATCTCTCAAGCAACCATTTTGAAGGTGTCATTCCGAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATATCAGAGGTGATATTCCAATGGAATTAGGGCAATTGAATACGCTTGAAGCTTTAGATCTCTCCTGGAATCGCCTCACTGGAATGATTCCGCAGGAATTGACAAGAATGAACTTTCTGGCCTTCTTAAACCTCTCTCAAAATCATCTCATCGGACCAATTCCTCATGGTCTACAGTTCAACACATTTGGAAATGACTCGTATGGCAGCAACCTTGATTTATGTGGTCCTCCTTTATCAAAACAATGTGGAACAAGTGATTCATCGCATCTTCCTCAACCTTTGGAGGAAGAAGAAGACGAAAGTGAGTCATATTTTTTTAGTGGATTTACATGGGAATCAGTAGTCATAGGCTACAGTTTTGGACTCGTTGTTGGAACTGTCATGTGGAGTCTCATGTTTAAATATCGTAAACCAAAATGGTTTGTCGAATTTTTTTGATGGACTCACGCCTCACAAAAGATGAAGGCCAAAGAAGAGAGCTCAGAGACGAAGGACTTAATGGAAAATTGAGAGGGGCCAAGTTGTCTTCGTTTAATTTTGTGGACTTATTAGTGAAGTTTTCTGGTTCTGTTTTTATCTTTTCAACTTTTTGTCTGTTGTTTGTATATGTTTGATAGAAACATAATTATATGTGTGTTATTCAAGTTATGTTAGTTTGTTATTTAGATCTGTCTAATAACAGCTTCATCGGTCCGTTTTCCTGTTCAATTTTAAGCTTAAACATGTCGAGTAATTCCCTATCTGGTCCACTGCCTAGCAATGCCAGCATGCTTCAAAAGCTAACCGAACTGTTACAACTCATTGAATAGCACAATACTCTCTTGGGTCTTTAATGTTAGTTCCCTTGAGTTGAGGCTCAATCATAATCGATTTAGTGGACTATGCGATGAGCTCAGAAAAAATCCAGTATTAGAAGACCTGTATTTAAGTCCTAATCAGTTCAATGGTTTTTTTCCTCAATCACTTGTGAATCTCACAAACCTTTATAAAATGTGACAAAACTATCAAAATAACGTGCAAACTTTATAATTTTTTTAAAATTTTATAAAAACTAATTATTTTAAATCGTTTGAAATCGAAAAAGCTTGAATTAATTAATTTATATGGTGGAGGTCCAAAATTGTGTTGGGAAAGACAAGGCACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTCTCGATTTGAACCAAGAGAAGACAAACAACCACAAGGAATATGATAGTAAGGCAGCAAGTAATTCAACCAAACAAATATAACAAGACAATAATAAACCAATCACACAAGACACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGAAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTGACTGCGAAAATCTCTCTTTTTGGCTGCTGAAAAAACACTCTTGTATATCTGAAAATAAGACCCTAAATAGTTTTATATTTGCCTCATAAGAATAGGCTTATGGGCAAAAATGGGTTGGTCCAAATTGGACTTTTATTTATCCACATAGGAAGGGAAAAAGGTCCATAACCCAACAAATTGGATGTCAACATTTAGCATTTGCTTGAACTACTGAATCAGTACTAGTAATTGATGAATCACACTAAGAACATATTATGATTGAACTGTATCATATTTTCCCCTGTTGTTTTTGTGGAATACAGCGCAACAGACAACACAACTAATCGGAAATGATCTTCACCAACTAATTTCTTTTGTTGTTACCTAAAACTTTTAGGAGTCACTTATACATATGAAACTGCTTGTGAGCATGAATCACATTACATTTAACAAATGCTTGATATGTATGCCACTGCAAGGAATTAGAGATGCAATGGGATGGGAATACAAGCATAATACTTGATGTCATGACTTGTCTTGGTGTAGCATTACCGGTGGAGGTAATTAGTTTCACCATATGTTGCTCGTACTCTCCAAAAGTGTAGCAGTATCTGACACGCACCATTTGAAATTTTTGAAGAGTCTGAGCAACATACTTTCACCTCAGAGCTGTGACACATACTTTAACTGCTTCACATGATATTTCTGTTATCTCTTTGAATAATCGAATTGAAGAACCCACTAGTATTACGTGATGTCCTTAAGCCTGTGTTTATTGTTTCTGAAAGAGCTTGTTGAAATGGCGAACAAACAACTGTTTCAGCTTAACTAGTCTGTATTTGTGGCTTACACTTGCTAGTTATCCCATATGATTTGCATGGACATGCTCGTGCTTTTGAGTTTTTCTTGGATTGAGCAGAAAATGAAAAGTTAATGTCATTTTACTCCCTGCGATACGACCTTAATAGTAATATAAAAGAGTTGCACGATTTAAGAGTGAAGAAATGAAGACGCCAGTAATTTATCCTTGCAAGTTTCTATTTTGGTTCCTGAAATATTTGCATCTTGCTATGTTTCAACTCTTATGAATCTGATTTTAACTTTGTGATTATTGTTCTCCTTTCGTTTAGGTGAAGAACATCGCATTTGCTGGTACTTTCAGGCTCATCTTCAGGCGACTTGTTGATGAGTTTCCTTGCTTCGGAGCTGTATATTATTCTCTAAGGCAGAAGGTGTTGTATAAACCTCAAATTTTCTTTTATCCTTCATTTGCCTGTGTATCGCTTTGGCAAATATATGCACAGAGATCATGTTATTGATACTAACCCTTAAACAATTTAGGCATCGTGTTGACACTTAAAATCCAGAATTGAAGCTAAAGCATTTCCCGTGTGTGTGCAGATGTCACTTACTTTTACCGGGATAAGGCTACTCACGTGCATATCTCACACCTAAATTCTGTAGGAAAAATGACAAGTACATTTCATTGTTTGCAGAAAAAGCTGGATTATACGCTTAAAGTATTTGGTGGTGACATGACAGCAATTCCTGGCGTTTCTGATGCAATTGAGGTTTGGGCGAACTCTTACCACTAAATCTGTTTCTCTGGTTTGTTATCCTTCCACAACAACCAATGCAGTTTTATTTAGATGTAACGAAGGCCTACAGATGCCATGGATATTTGGCTGGCGTAGCCAAGCCTTATTTTGAAGTAGTGGCTACAAGGATAGGATGTTATTGTAGTGGTTATTTTCATCTTTGTTTATGACAATCAGGAACTTAATTCACGACATGTTAACAAGATAAAACAACTCTTTAGTTTCTTAGTGCAACGAAGTTGCTACTTTAAAGTTGTTTGCCTGAACTTGAATTTTTTTATGCAGTCATAAAATGGAAAGCTTAACAAATGTTCGTTATGATTTTCTACACTTGAGATGTACTAAAATGAATTTATTTCTCCAGGGAACCATCCGGATGCTGTTGAAGACTCAATCATGTGGCCAGTTCGAAAAGTTATTCGCATTTTACCAGGGGATCATAGGTATTGATATTGACAATGGTTTCATTGTATATACGATTGTCCTATGAATAGTATTTCCTGCTCATTATATTCTTAATGATATGATCTTGATCTACCGAGTGCATTAGACAGGAAGACAACAGGGGGGAGGGGTTACATATCCTGTAGAACGTAGATCATACAGTGCATTATAGTAGTCTCAGCTGCCATCGTTTAGTCCTATGTTGTAAACTTATTGGCAGTGATTTCCTTTCCCTTATAGCTCCAGAGCAGAGCTAACACAGATCGCGCAGTTTGTAGTCATTATTTTCCTTTCTGTCATGATTTGTCTACACTTGTTTTGAGCCGAGGGATGACAATGGGCATGTTGTTATTGTTGTAAATTGTGAGCACAACACATAGAATAGTCTCTGTGCTTGATGTGTGTTAACTGTTCTCATTATCTTTGGTTAGGTGCACTTGGAGCTATTTATTGTACTGCCCGAATGGCAAGAACAATGGGCTAAGTAACCTTTTTTCTCAGAATGAATCAATGACTTCATTAGAGAAAGTTCTTAAAAACTCGACAGAAGGAAAAGAAGCTAGTCCTAATGGAACTGAAATCAACAATATATAGAAGGCTTCTGTTTTTGTATTTTTAATTTTCTGGTTCTGTTTATGTATTTTTAATCTTCTGTTTGTTGTTTATATATGTTTGATAGAAGCATAATTTTATGTGTGTTATTTCGCATCATCTTGTGTAACACACCCTGCAGAGATATGTTATTCTTACAATAACTTGTATTTATGAAGTTAATGAACAGAAACAGAAACAAGATAAAGCAGAAAAAAATTTAAAATAGAAGAATTAATCCGAGTCCACAGAAAATACTGTGTGTCCTTAAGAAATT</genome_strand>
        <mrna_strand>CAGCATTTGTTTGACTTGAATTAGTC-ATTTTTTTCTGTCACAAATGGCAGATAAATTAAGTATTTAAAATATTAACAATAAAAAACAATTCTTTACACAAACTGTTTCTGATTAAACGATAAAGTTTTTATGTTCTTTTAATCGTTAATCGAATAAATTTTAAAAATTCAAGCAGAATAGAAACCCAACCATAAAGGTTTTAATCTCCAGAAACCTCAAATACAAAAACTGTTAAATTTCTTAAGATTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="132771" stop="131786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132471" g_stop="132085" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132471" e_stop="132085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGAAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTGACTGCGAAAATCTCTCTTTTTG</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431911" ref_strand="+" ref_description="SGN-E431911 [STM-56-O7]">
      <seq>acatctttttttaacttgaataactattgatattaaaataacacacatataattatgtttctatcaaacatatataaacaacaaacagaaaattaaaaatacaaaaacagaaccagaaaagttcactaattattccacaaaatcaaacaaagacaagttggccctctcaatcttccattaaatccgtcgtctctgagctctcttctttggccttcttcttttgtgaggcatgagtccatcgaaaaattccacaaaccattttggcttacgatatttaaacatgagactccacatgacagttccaacaactagtccaaagctgtagcctatgactactgattcccacgtaaatccactaaaaaaatatgactcgccttcttcttcggactccaattgttgaggaacatgcgatgaatcactcgttccacatttctttgttaaaggaagaccacataaatcaaggttgccaccatacgagtcattttcaaatgtgttgaattgtagaccatgaggaattggaccgacgagatgattttgagagacgtttaagaaggccagaaagttcattcgtgtcaattcctgtggaatctttccagtgagccgattccaggagagatctaaagcttcaagcttattcaatttccccaattgcattggaataccacctatgaggttgttatgggataaattgagtagccaaagtgagctgagatcctttagtgtttccggaatgacaccttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="132835" stop="134155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133143" g_stop="133855" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="744" r_length="708" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E431911" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133143" e_stop="133855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACACACATATAATTATGTTTCTATCAAACATATACAAACAACAGACAAAAAGTTGAAAAGATAAAAACAGAACCAGAAAACTTCACTAATAAGTCCACAAAATTAAACGAAGACAACTTGGCCCCTCTCAATTTTCCATTAAGTCCTTCGTCTCTGAGCTCTCTTCTTTGGCCTTCATCTTTTGTGAGGCGTGAGTCCATCAAAAAAATTCGACAAACCATTTTGGTTTACGATATTTAAACATGAGACTCCACATGACAGTTCCAACAACGAGTCCAAAACTGTAGCCTATGACTACTGATTCCCATGTAAATCCACTAAAAAAATATGACTCACTTTCGTCTTCTTCTTCCTCCAAAGGTTGAGGAAGATGCGATGAATCACTTGTTCCACATTGTTTTGATAAAGGAGGACCACATAAATCAAGGTTGCTGCCATACGAGTCATTTCCAAATGTGTTGAACTGTAGACCATGAGGAATTGGTCCGATGAGATGATTTTGAGAGAGGTTTAAGAAGGCCAGAAAGTTCATTCTTGTCAATTCCTGCGGAATCATTCCAGTGAGGCGATTCCAGGAGAGATCTAAAGCTTCAAGCGTATTCAATTGCCCTAATTCCATTGGAATATCACCTCTGATATTGTTATGGGATAAATTGAGTAGCCAAAGTGAGCTGAGATCCTTTAGTGTTTTCGGAATGACACCTTCAAA</genome_strand>
        <mrna_strand>AATAACACACATATAATTATGTTTCTATCAAACATATATAAACAACAAACAGAAAATTAAAAATACAAAAACAGAACCAGAAAAGTTCACTAATTATTCCACAAAATCAAACAAAGACAAGTTGG-CCCTCTCAATCTTCCATTAAATCCGTCGTCTCTGAGCTCTCTTCTTTGGCCTTCTTCTTTTGTGAGGCATGAGTCCATC-GAAAAATTCCACAAACCATTTTGGCTTACGATATTTAAACATGAGACTCCACATGACAGTTCCAACAACTAGTCCAAAGCTGTAGCCTATGACTACTGATTCCCACGTAAATCCACTAAAAAAATATGACTCGC---CTTCTTCTTCGGACTCCAATTGTTGAGGAACATGCGATGAATCACTCGTTCCACATTTCTTTGTTAAAGGAAGACCACATAAATCAAGGTTGCCACCATACGAGTCATTTTCAAATGTGTTGAATTGTAGACCATGAGGAATTGGACCGACGAGATGATTTTGAGAGACGTTTAAGAAGGCCAGAAAGTTCATTCGTGTCAATTCCTGTGGAATCTTTCCAGTGAGCCGATTCCAGGAGAGATCTAAAGCTTCAAGCTTATTCAATTTCCCCAATTGCATTGGAATACCACCTATGAGGTTGTTATGGGATAAATTGAGTAGCCAAAGTGAGCTGAGATCCTTTAGTGTTTCCGGAATGACACCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413671" ref_strand="+" ref_description="SGN-E413671 [STM-18-C2]">
      <seq>ctatcttatttgggttttcatcatgaaccaaactctattgatattaaaataacacacatataattatgtttctatcaaacatatataaacaacaaacagaaaattaaaaatacaaaagcagaaccagaaaagttcactaattattccacaaaatcaaacaaagacaagtttgccctctcaatcttccattaagtccttcgtctctgagctctcttctttggccttcttcttttgtgaggcatgagtccatcaaaaaattccacaaaccattttggcttacgatatttaaacatgagactccacatgacagttccaacaactagtccaaaactgtagcctatgactactgattcccaagtaaatccactaaaaaaatatgattcgccatcttcttctttggactccaatggttgaggaatatgcgatgaatcactcgttccacatttctttgttaatggaagaccacataaatcaaggttgccaccgtacgagtcattttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="132835" stop="140233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133143" g_stop="133601" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="504" r_length="457" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E413671" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133143" e_stop="133601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACACACATATAATTATGTTTCTATCAAACATATACAAACAACAGACAAAAAGTTGAAAAGATAAAAACAGAACCAGAAAACTTCACTAATAAGTCCACAAAATTAAACGAAGACAACTTGGCCCCTCTCAATTTTCCATTAAGTCCTTCGTCTCTGAGCTCTCTTCTTTGGCCTTCATCTTTTGTGAGGCGTGAGTCCATCAAAAAAATTCGACAAACCATTTTGGTTTACGATATTTAAACATGAGACTCCACATGACAGTTCCAACAACGAGTCCAAAACTGTAGCCTATGACTACTGATTCCCATGTAAATCCACTAAAAAAATATGACTCACTTTCGTCTTCTTCTTCCTCCAAAGGTTGAGGAAGATGCGATGAATCACTTGTTCCACATTGTTTTGATAAAGGAGGACCACATAAATCAAGGTTGCTGCCATACGAGTCATTTCCAAAT</genome_strand>
        <mrna_strand>AATAACACACATATAATTATGTTTCTATCAAACATATATAAACAACAAACAGAAAATTAAAAATACAAAAGCAGAACCAGAAAAGTTCACTAATTATTCCACAAAATCAAACAAAGACAAGTTTG-CCCTCTCAATCTTCCATTAAGTCCTTCGTCTCTGAGCTCTCTTCTTTGGCCTTCTTCTTTTGTGAGGCATGAGTCCATC-AAAAAATTCCACAAACCATTTTGGCTTACGATATTTAAACATGAGACTCCACATGACAGTTCCAACAACTAGTCCAAAACTGTAGCCTATGACTACTGATTCCCAAGTAAATCCACTAAAAAAATATGATTCGCCATCTTCTTCTTTGGACTCCAATGGTTGAGGAATATGCGATGAATCACTCGTTCCACATTTCTTTGTTAATGGAAGACCACATAAATCAAGGTTGCCACCGTACGAGTCATTTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431910" ref_strand="+" ref_description="SGN-E431910 [STM-56-O7]">
      <seq>gaaacttcaaggcaatgatcaaattagatggcgaagacacaggaaatatcaagtacatggaatctatgttgaatttgctatttgtcacatcgtatgaggattcagtgagtttggtaatcaaagggcaggatattgagctacaaagaatcagcacaattatgacaaccatagatatctcacgcaaccattttgaaggtgtcattccggaaacactaaaggatctcagctcactttggctactcaatttatcccataacaacctcataggtggtattccaatgcaattggggaaattgaataagcttgaagctttagatctctcctggaatcggctcactggaaagattccacaggaattgacacgaatgaactttctggccttcttaaacgtctctcaaaatcatctcgtcggtccaattcctcatggtctacaattcaacacatttgaaaatgactcgtatggtggcaaccttgatttatgtggtcttcctttaacaaagaaatgtggaacgagtgattcatcgcatgttcctcaacaattggagtccgaagaagaaagcgagtcatatttttttagtggatttacgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="140675" stop="139480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140375" g_stop="139780" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E431910" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140375" e_stop="139780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACATAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTTATCAAAGGGCAGGATTTGTAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTTTCAAGCAACCATTTTGAAGGTGTCATTCCGGAAACACTAAAAGATCTCAGCTCGCTTTGGCTACTCAATTTATCTCATAACAATCTTATAGGTCATATTCCAATGGAATTGGGGCAATTGATTACACTTGAAGCTTTAGATCTCTCCTGGAATCGGCTCACTGGAAAGATTCCGCAGGAATTGACAAGAATGAACTTTCTGTCCGTATTAAACCTCTCTCAAAATCATCTCATTGGACCAATTCCTCAAGGTCTACAGTTCAACACATTTGGAAATGACTCGTACGGCGGCAACCTTGATTTATGTGGTCCTCCTTTATCAAAACAATGTGGAACGAGTGATCCATCGCATGCTCCTCAACCATTGGAGGAAGAAGAAAAAGATGAAAGTGAGTCATATTTTTTTAGTGGATTTACGTGG</genome_strand>
        <mrna_strand>GAAACTTCAAGGCAATGATCAAATTAGATGGCGAAGACACAGGAAATATCAAGTACATGGAATCTATGTTGAATTTGCTATTTGTCACATCGTATGAGGATTCAGTGAGTTTGGTAATCAAAGGGCAGGATATTGAGCTACAAAGAATCAGCACAATTATGACAACCATAGATATCTCACGCAACCATTTTGAAGGTGTCATTCCGGAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAACCTCATAGGTGGTATTCCAATGCAATTGGGGAAATTGAATAAGCTTGAAGCTTTAGATCTCTCCTGGAATCGGCTCACTGGAAAGATTCCACAGGAATTGACACGAATGAACTTTCTGGCCTTCTTAAACGTCTCTCAAAATCATCTCGTCGGTCCAATTCCTCATGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGTGGCAACCTTGATTTATGTGGTCTTCCTTTAACAAAGAAATGTGGAACGAGTGATTCATCGCATGTTCCTCAACAATTGGAGTCCGAAG----A-A-GAAAGCGAGTCATATTTTTTTAGTGGATTTACGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412642" ref_strand="+" ref_description="SGN-E412642 [STM-16-J3]">
      <seq>gtcgagtaactccctatctggcccactgcctagcaacccaagcatgcttcaaaagctaacttctgtggatttgtcatacaactcactgaatggtaccataccatcttgggtgtttagcctaccttttctatcttcagtgttgctccaacataaccgattcagaggactagccgatgaagtgatcaaaataaacccaacattaaaagaactgcatttaagcaataatcaactcagtggttcttttcctcaatcacttgtgaatctcacaaatctttttacccttgacatttcatcaaataacatcaccattgatgagggaatgaatatcacctttcttagcctatcatctttattcttatcatcttgtgaactgaagcattttccatacttcttgagaaatgtaaagacacttgtctacttggatatttctaacaataagattcgtggtcaaatccctaactggtttagcggcatgagatgggactcattacaattcctaaacctttctcataattcattgacaggccacctaccacaatttcattactataacgtacagtgtcttgatctgaaatttaactcccttcaggntccactaccttcatccatttgtaacatgagttcgcttagctttatagatttatcacgcaacaacttcagtgactcagttccacattgcttggggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="141727" stop="120567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141427" g_stop="140739" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E412642" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141427" e_stop="140739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGTAATTCCCTATCTGGCCCACTGCCTAGCAACACAAGCATGCTTCCAAAACTAATCCATCTAAATTTGTCATACAACTCACTGAATGGTACCATACCATCTTGGGTGTTTAGCCTACCTTTGCTATATTCAGTGTCCCTCCAACATAACCGATTCAGAGGACTAGCCGATGAAGTGATCAAAACAAACCCAACATTAAAAGAACTGCATTTAAGCAATAATCAACTCAGTGGTTCTTTTCCTCAATCACTTGCGAATCTCACAAACCTTGAAACCCTTGGAATTTCATCAAATAACATCACCGTTGATGAGGGAATGAATATCACCTTTCTTAGCCTATCATCTTTATTCTTATCATCTTGTCAACTGAAGCATTTTCCATACTTCTTGAGAAATGTAAACACACTTGTGTACTTGGATATTTCTAACAATAAGATTTCTGGTCAAATCCCTAACTGGTTTAGCGGCATGAGGTGGGACTCGTTGATTTTCTTAAACCTTTCTCATAATTCATTAACAGGCAACCTACCACAATTTCGTTACGATAACCTAGGGTATCTTGATCTGAAATTTAACTCCCTTCAGGGTCCACTACCTTCATCCATTTGTAACATGAGCAAACTTATGTTATTAGATTTATCACACAACTACTTAAGCAACTCAGTTCCACATTGCTT-GGGAAGCA</genome_strand>
        <mrna_strand>GTCGAGTAACTCCCTATCTGGCCCACTGCCTAGCAACCCAAGCATGCTTCAAAAGCTAACTTCTGTGGATTTGTCATACAACTCACTGAATGGTACCATACCATCTTGGGTGTTTAGCCTACCTTTTCTATCTTCAGTGTTGCTCCAACATAACCGATTCAGAGGACTAGCCGATGAAGTGATCAAAATAAACCCAACATTAAAAGAACTGCATTTAAGCAATAATCAACTCAGTGGTTCTTTTCCTCAATCACTTGTGAATCTCACAAATCTTTTTACCCTTGACATTTCATCAAATAACATCACCATTGATGAGGGAATGAATATCACCTTTCTTAGCCTATCATCTTTATTCTTATCATCTTGTGAACTGAAGCATTTTCCATACTTCTTGAGAAATGTAAAGACACTTGTCTACTTGGATATTTCTAACAATAAGATTCGTGGTCAAATCCCTAACTGGTTTAGCGGCATGAGATGGGACTCATTACAATTCCTAAACCTTTCTCATAATTCATTGACAGGCCACCTACCACAATTTCATTACTATAACGTACAGTGTCTTGATCTGAAATTTAACTCCCTTCAGGNTCCACTACCTTCATCCATTTGTAACATGAGTTCGCTTAGCTTTATAGATTTATCACGCAACAACTTCAGTGACTCAGTTCCACATTGCTTGGGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396239" ref_strand="-" ref_description="SGN-E396239 [TUS-34-O4](-)">
      <seq>ttttttttttttttttttttttttaaaggaaggttccttgttttaccacaaagctctattcttgatcaaaattcataacatggttacaaggtaacaatatatattcaattaagttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgacttttaaagatggcatcaaaaaatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="25146" stop="143388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142301" g_stop="142409" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142892" i_length="483">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142893" g_stop="143088" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="304" r_length="195" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E396239" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396239" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="142301" e_stop="142409"/>
          <exon e_start="142893" e_stop="143088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTAAAGGAAGGTTCCTTGTTTTACCACAAAGCTCTATTCTTGATCAAAATTCATAACATGGTTACAAGGTAACAATATATATTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTTAAAGATGGCATCAAAAAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128536" stop="143730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142312" g_stop="142502" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142503" i_stop="142929" i_length="427">
            <donor d_prob="0.759" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142930" g_stop="143426" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="670" r_length="481" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142312" e_stop="142502"/>
          <exon e_start="142930" e_stop="143426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATG</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTATAAAGGAAGTCAATTTTGATTTTCAAACACTGAAAATTTTCCTTCTCNGTA-TTATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGC-A-A-GA--TG----A-----ACAACAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128555" stop="143236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142326" g_stop="142936" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142326" e_stop="142936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128555" stop="143207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142326" g_stop="142907" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142326" e_stop="142907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128555" stop="143144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142326" g_stop="142844" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142326" e_stop="142844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTGAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128564" stop="147748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142336" g_stop="142738" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142336" e_stop="142738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254845" ref_strand="+" ref_description="SGN-E254845 [cLEG-33-L11]">
      <seq>aggaagtcaaattttgattttttaaacactgaaaatttggctttcggtgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtaccagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagaataaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagaattgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128729" stop="143252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142357" g_stop="142952" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E254845" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142357" e_stop="142952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTA-CAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTC</genome_strand>
        <mrna_strand>AGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTGGCTTTCGGTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACCAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGAATAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGAATTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128729" stop="143316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142358" g_stop="143016" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142358" e_stop="143016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128790" stop="143469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142457" g_stop="143169" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142457" e_stop="143169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128830" stop="143508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142497" g_stop="143208" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142497" e_stop="143208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128831" stop="143438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142498" g_stop="143138" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142498" e_stop="143138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128947" stop="143530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142614" g_stop="143230" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142614" e_stop="143230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-----G-TTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375521" ref_strand="+" ref_description="SGN-E375521 [TUS-34-B10]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128947" stop="143107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142614" g_stop="142808" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E375521" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142614" e_stop="142808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAA-ATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="142433" stop="143763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142732" g_stop="143463" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142732" e_stop="143463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAAGGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="142433" stop="143476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142732" g_stop="143176" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142732" e_stop="143176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="142466" stop="143838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142766" g_stop="143538" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142766" e_stop="143538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="142646" stop="143853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142946" g_stop="143553" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142946" e_stop="143553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="+" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>ttttttttttgattttgtgggatcttcttcacaatatttactcctgatattgctgaattaccacgcgacctcttttctgcggccttgttatcctcttcgattctcagccttaccatgagatcttcaacagtcatctccttgcgtttatgtttcaagtagtttttgaagtccttccacaatggaggtaacttctctataatggcagccacttgaaaagcatcattcacaaccaatccttcagcaaggagatcatggattatgacctgcaattcttgaacttgggtgacgacggtcttactgtctatcatcttatagtccagaaactttgccacaataaatttcttcattccggcatcctctgttttgtacttcttttctaaagcatcccagagttcttttgaggttttcacattactgtacacattgtatagatcatcctgcaggccactcagaatataatttttacacaaaaaatcagaatgtgtccatgcttctgttaccaagaatcgttcttcaggcggagtttcatccgacataacaggaacgttctcattaatgaacctctgcagactcaatgtagtcagatagaaagacatcttttgctgccatctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="-" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="143979" stop="142760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143677" g_stop="143061" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="-" ref_id="SGN-E419244" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143677" e_stop="143061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTTTAATTTTGTGGAATCTTCTTCCACAAAATTTACTCCAGATATTGCTGAATTATCACGTGACCTCTTTTCTGCAGCCTTATTATCCTCTTCGATTCTCAACCTTAGTATGAGATCTTCAACAGTCATCTCATTGCGTTTGTGTTTCAAGTAGTTTTTAAAGTCCTTCCACAATGGAGGTAACTTTTCAATAATTGCAGCCACTTGAAAAGCATCATTCATAATTAATCCTTCAGCAAGGAGATCATGTATTATGACCTGCAATTCTTGAACTTGGGTGACGACAGTCTTACTGTCTATCATCTTAAAGTCCAGAAATTTTGCCACAATGAATTTCTTCATTCCGGCATCTTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTTGCATTGTTGTACACATTGTACAGATCATCTTGTAGACCACTCAAAATATAATTTTTACACAAAAAATCTGAGTGTGTCCATGCTTCTGTTACCAATAATCGTTCATCAGCCAAAGTTTCATCTGACATAACAGGAACATTCTCTTTGATGAACTTCTGCAGACTCAACATAGTGAGATAGAAGAACATCTTTTGCTACCATCTCTTAA</genome_strand>
        <mrna_strand>TTTTTTTTTTGATTTTGTGGGATCTTCTT-CACAATATTTACTCCTGATATTGCTGAATTACCACGCGACCTCTTTTCTGCGGCCTTGTTATCCTCTTCGATTCTCAGCCTTACCATGAGATCTTCAACAGTCATCTCCTTGCGTTTATGTTTCAAGTAGTTTTTGAAGTCCTTCCACAATGGAGGTAACTTCTCTATAATGGCAGCCACTTGAAAAGCATCATTCACAACCAATCCTTCAGCAAGGAGATCATGGATTATGACCTGCAATTCTTGAACTTGGGTGACGACGGTCTTACTGTCTATCATCTTATAGTCCAGAAACTTTGCCACAATAAATTTCTTCATTCCGGCATCCTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTCACATTACTGTACACATTGTATAGATCATCCTGCAGGCCACTCAGAATATAATTTTTACACAAAAAATCAGAATGTGTCCATGCTTCTGTTACCAAGAATCGTTCTTCAGGCGGAGTTTCATCCGACATAACAGGAACGTTCTCATTAATGAACCTCTGCAGACTCAATGTAGTCAGATAGAAAGACATCTTTTGCTGCCATCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="128555" stop="147586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147061" g_stop="147286" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147061" e_stop="147286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTAT-AAAGGAAGTCAATTTTTGATTTTTTAATAACTGAAAAAAAAAATTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="146832" stop="147748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147124" g_stop="147451" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147124" e_stop="147451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAACAA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>167</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7178" PGL_stop="7740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7178" e_stop="7740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="7178" e_stop="7740" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7178" stop="7637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7215" stop="7740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7215" stop="7686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAAACCATTTTTGTTGTTGCAATGGCTACCAATTCATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGAAGTTGAAGACGGAGTCGCACGCCAACTGTTCGATGAAATGCCTGAAGTCGGGGA</gDNA_template>
            <first_frame> I  Q  T  I  F  V  V  A  M  A  T  N  S  S  T  N  I  L  E  L  N  E  V  I  V  A  V  I  P  W  P  E  H  G  H  L  N  Q  L  F  H  I  A  N  F  I  S  S  H  N  I  P  L  H  F  I  S  L  T  D  R  N  Q  D  L  K  T  R  V  Q  N  T  S  K  I  H  F  N  D  L  L  A  P  P  L  I  P  I  S  E  P  R  E  D  F  A  D  E  F  A  F  L  E  F  L  D  K  L  G  E  P  I  C  E  I  C  V  E  I  S  K  K  A  K  K  L  V  V  V  F  D  S  L  M  T  D  V  I  K  E  V  Y  S  I  S  N  V  E  C  Y  S  F  H  A  I  S  A  F  C  M  Y  S  T  F  Q  Q  V  A  D  E  V  E  D  G  V  A  R  Q  L  F  D  E  M  P  E  V  G   </first_frame>
            <second_frame>  F  K  P  F  L  L  L  Q  W  L  P  I  H  Q  P  T  F  L  S  S  M  K  *  L  *  L  *  F  H  G  Q  N  M  V  I  S  I  N  S  S  I  *  L  T  S  S  L  L  T  I  S  P  Y  T  S  S  L  S  L  I  E  I  K  I  *  K  P  A  F  K  I  P  Q  K  F  I  L  M  T  F  *  H  P  L  *  S  Q  F  Q  N  P  E  R  I  L  L  M  S  L  H  F  W  S  F  W  I  N  W  G  N  P  F  V  K  F  V  L  K  S  R  R  R  R  R  N  W  W  L  F  L  I  L  *  *  L  M  *  L  R  K  C  I  R  Y  Q  M  L  S  V  T  L  F  M  R  F  Q  L  F  V  C  I  L  H  F  N  R  L  L  M  K  L  K  T  E  S  H  A  N  C  S  M  K  C  L  K  S  G  </second_frame>
            <third_frame>   S  N  H  F  C  C  C  N  G  Y  Q  F  I  N  Q  H  S  *  A  Q  *  S  N  C  S  C  N  S  M  A  R  T  W  S  S  Q  S  T  L  P  Y  S  *  L  H  L  F  S  Q  Y  P  L  T  L  H  L  S  H  *  S  K  S  R  S  K  N  P  R  S  K  Y  L  K  N  S  F  *  *  P  F  S  T  P  S  D  P  N  F  R  T  Q  R  G  F  C  *  *  V  C  I  F  G  V  F  G  *  I  G  G  T  H  L  *  N  L  C  *  N  L  E  E  G  E  E  I  G  G  C  F  *  F  F  D  D  *  C  D  *  G  S  V  F  D  I  K  C  *  V  L  L  F  S  C  D  F  S  F  L  Y  V  F  Y  I  S  T  G  C  *  *  S  *  R  R  S  R  T  P  T  V  R  *  N  A  *  S  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7178" stop="7738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQTIFVVAMATNSSTNILELNEVIVAVIPWPEHGHLNQLFHIANFISSHNIPLHFISLTDRNQDLKTRVQNTSKIHFNDLLAPPLIPISEPREDFADEFAFLEFLDKLGEPICEICVEISKKAKKLVVVFDSLMTDVIKEVYSISNVECYSFHAISAFCMYSTFQQVADEVEDGVARQLFDEMPEVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8168" PGL_stop="8644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8168" e_stop="8644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="8168" e_stop="8644" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8168" stop="8644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412277" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGAGTGGGAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAACTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCTATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGGATCCCGGTTAGGAGTTGGTCTCGTAGGGAAGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTTAGGACTTTGATGGGTTCACCGGAAGGGGAAGAAATTCGACAGAGGGCAATCGGGTTGAGCAATAAGATCAAGAACTCTATTAGTCATGGAGGACTTGCACATAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTATCAAGTATGTCATGAATAACTATTTTTCAA</gDNA_template>
            <first_frame> E  R  V  G  G  R  G  M  V  V  R  N  W  V  P  Q  L  E  I  L  G  H  K  S  T  G  G  F  L  S  H  C  G  W  N  S  C  M  E  S  V  S  M  G  V  P  I  A  T  W  P  I  Q  V  D  Q  P  Y  N  A  V  F  V  T  N  V  L  K  I  G  I  P  V  R  S  W  S  R  R  E  E  L  V  T  A  T  T  I  E  K  A  V  R  T  L  M  G  S  P  E  G  E  E  I  R  Q  R  A  I  G  L  S  N  K  I  K  N  S  I  S  H  G  G  L  A  H  K  E  R  E  S  F  I  S  C  I  T  K  *  I  S  L  N  E  H  Q  H  F  V  S  S  M  S  *  I  T  I  F  Q </first_frame>
            <second_frame>  K  E  W  E  E  E  E  W  W  *  G  I  G  C  L  N  W  K  S  W  D  I  N  L  R  E  G  S  *  V  T  V  D  G  I  L  V  W  R  A  L  A  W  E  F  L  *  Q  L  G  Q  F  K  W  T  N  R  I  T  L  F  L  *  P  T  C  *  R  L  G  S  R  L  G  V  G  L  V  G  K  N  W  *  Q  Q  Q  L  L  R  K  L  L  G  L  *  W  V  H  R  K  G  K  K  F  D  R  G  Q  S  G  *  A  I  R  S  R  T  L  L  V  M  E  D  L  H  I  R  K  G  N  L  S  F  L  V  L  P  N  K  F  H  S  M  N  I  N  I  L  Y  Q  V  C  H  E  *  L  F  F   </second_frame>
            <third_frame>   K  S  G  R  K  R  N  G  G  E  E  L  G  A  S  T  G  N  L  G  T  *  I  Y  G  R  V  L  E  S  L  W  M  E  F  L  Y  G  E  R  *  H  G  S  S  Y  S  N  L  A  N  S  S  G  P  T  V  *  R  C  F  C  N  Q  R  A  E  D  W  D  P  G  *  E  L  V  S  *  G  R  I  G  N  S  N  N  Y  *  E  S  C  *  D  F  D  G  F  T  G  R  G  R  N  S  T  E  G  N  R  V  E  Q  *  D  Q  E  L  Y  *  S  W  R  T  C  T  *  G  K  G  I  F  H  F  L  Y  Y  Q  I  N  F  T  Q  *  T  S  T  F  C  I  K  Y  V  M  N  N  Y  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8168" stop="8584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERVGGRGMVVRNWVPQLEILGHKSTGGFLSHCGWNSCMESVSMGVPIATWPIQVDQPYNAVFVTNVLKIGIPVRSWSRREELVTATTIEKAVRTLMGSPEGEEIRQRAIGLSNKIKNSISHGGLAHKERESFISCITK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13506" PGL_stop="11605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13506" e_stop="11829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="13506" e_stop="11829" e_length="1678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13506" stop="12658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13505" stop="12812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13431" stop="12673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13426" stop="11829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13414" stop="12784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13407" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13405" stop="12883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13401" stop="12545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13380" stop="12782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13370" stop="12795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13355" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="12773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13252" stop="12667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13142" stop="12625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13059" stop="12526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="12524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12993" stop="12668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12762" stop="12322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12688" stop="12357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12609" stop="12035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12546" stop="11851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12544" stop="11847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTT</gDNA_template>
            <first_frame> *  K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R  *  V  P  R  F  T  C  E  S  K  R  Q  A  V  M  G  F  W  T  I  S  Y  A  A  R  I  K  L  *  H  H  S  A  S  *  S  M  S  R  I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  Q  R  Y  F  Q  S  </first_frame>
            <second_frame>  K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E  G  K  Y  P  D  L  L  A  K  A  K  G  K  P  L  W  A  F  G  P  F  H  M  L  L  E  S  N  S  N  I  T  P  R  H  D  Q  C  L  E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F  R  D  I  F  N  L </second_frame>
            <third_frame>   K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  V  S  T  Q  I  Y  L  R  K  Q  K  A  S  R  Y  G  L  L  D  H  F  I  C  C  *  N  Q  T  L  T  S  L  R  V  M  I  N  V  *  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H  S  E  I  F  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13448" stop="12024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEGKYPDLLAKAKGKPLWAFGPFHMLLESNSNITPRHDQCLEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13506" e_stop="11883"/>
            <exon e_start="11612" e_stop="11605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.641" e_score="0.997"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13506" e_stop="11883" e_length="1624"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.641">
            <gDNA_intron_boundary i_start="11882" i_stop="11613" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="0.875">
            <gDNA_exon_boundary e_start="11612" e_stop="11605" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13506" stop="12658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13505" stop="12812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13431" stop="12673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13414" stop="12784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13407" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13405" stop="12883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13401" stop="12545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13380" stop="12782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13370" stop="12795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13355" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="12773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13252" stop="12667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13142" stop="12625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13059" stop="12526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="12524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12993" stop="12668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12762" stop="12322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12688" stop="12357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12609" stop="12035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12449" stop="11883"/>
              <exon start="11612" stop="11605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414733" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAA : ACTCTTCA</gDNA_template>
            <first_frame> *  K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R  *  V  P  R  F  T  C  E  S  K  R  Q  A  V  M  G  F  W  T  I  S  Y  A  A  R  I  K  L  *  H  H  S  A  S  *  S  M  S  R  I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q   : N  S  S </first_frame>
            <second_frame>  K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E  G  K  Y  P  D  L  L  A  K  A  K  G  K  P  L  W  A  F  G  P  F  H  M  L  L  E  S  N  S  N  I  T  P  R  H  D  Q  C  L  E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  :  T  L   </second_frame>
            <third_frame>   K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  V  S  T  Q  I  Y  L  R  K  Q  K  A  S  R  Y  G  L  L  D  H  F  I  C  C  *  N  Q  T  L  T  S  L  R  V  M  I  N  V  *  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K :   L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13448" stop="12024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEGKYPDLLAKAKGKPLWAFGPFHMLLESNSNITPRHDQCLEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13505" e_stop="12758"/>
            <exon e_start="12640" e_stop="11847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.628" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13505" e_stop="12758" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="0.628" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12757" i_stop="12641" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12640" e_stop="11847" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13505" stop="12812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13414" stop="12784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13412" stop="12891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13407" stop="12864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13405" stop="12883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13380" stop="12782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13370" stop="12795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13330" stop="12956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="12773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="12874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12995" stop="12758"/>
              <exon start="12640" stop="12137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12941" stop="12758"/>
              <exon start="12640" stop="12320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12936" stop="12758"/>
              <exon start="12640" stop="12484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12936" stop="12758"/>
              <exon start="12640" stop="12484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12609" stop="12035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12546" stop="11851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12544" stop="11847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG : AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTC</gDNA_template>
            <first_frame> K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E   : E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F </first_frame>
            <second_frame>  K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  :  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H   </second_frame>
            <third_frame>   K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R :   I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13448" stop="12758"/>
                    <exon start="12640" stop="12024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15585" PGL_stop="15958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15585" e_stop="15958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="15585" e_stop="15958" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15585" stop="15958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTA</gDNA_template>
            <first_frame> V  Q  G  Q  L  H  S  L  L  P  G  Y  V  H  L  A  K  R  T  N  I  F  S  S  R  D  *  T  A  L  M  P  L  A  H  Q  V  D  R  S  A  L  R  K  Q  C  H  S  A  I  N  F  F  F  T  F  I  V  F  V  P  N  A  G  H  C  R  V  Q  N  Q  *  F  K  C  E  S  L  G  R  C  F  L  V  C  L  T  N  L  L  V  L  N  N  E  Q  Y  V  S  F  C  V  L  R  V  L  C  H  I  G  Y  A  C  L  F  V  Q  F  *  T  S  L  T  A   </first_frame>
            <second_frame>  S  K  D  N  F  I  L  F  F  L  A  M  F  T  L  Q  R  E  Q  I  F  S  V  V  E  I  E  L  H  S  C  L  S  R  I  K  L  T  V  P  P  Y  V  S  N  A  I  Q  P  L  T  S  S  L  H  S  L  C  L  Y  Q  M  Q  A  I  V  E  F  R  I  S  D  S  S  V  K  V  S  A  G  V  S  W  Y  A  S  Q  I  Y  L  F  *  T  M  N  N  M  F  H  F  V  S  Y  V  Y  Y  V  I  *  D  T  R  V  Y  L  F  N  F  K  Q  V  *  L  L  </second_frame>
            <third_frame>   P  R  T  T  S  F  S  S  S  W  L  C  S  P  C  K  E  N  K  Y  F  Q  *  *  R  L  N  C  T  H  A  S  R  A  S  S  *  P  F  R  L  T  *  A  M  P  F  S  H  *  L  L  L  Y  I  H  C  V  C  T  K  C  R  P  L  *  S  S  E  S  V  I  Q  V  *  K  S  R  Q  V  F  P  G  M  P  H  K  S  T  C  F  E  Q  *  T  I  C  F  I  L  C  L  T  C  I  M  S  Y  R  I  R  V  S  I  C  S  I  L  N  K  F  N  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15586" stop="15861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKDNFILFFLAMFTLQREQIFSVVEIELHSCLSRIKLTVPPYVSNAIQPLTSSLHSLCLYQMQAIVEFRISDSSVKVSAGVSWYASQIYLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="17442" PGL_stop="16487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17442" e_stop="16487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17442" e_stop="16487" e_length="956"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17442" stop="16827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="16899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17317" stop="16791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17185" stop="16487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16816" stop="16508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16816" stop="16508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16815" stop="16508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</gDNA_template>
            <first_frame> L  F  C  *  C  *  R  I  F  E  T  S  R  S  R  *  C  K  S  F  K  H  L  F  R  *  P  V  E  T  F  I  S  N  A  K  K  *  S  R  S  S  N  I  T  L  R  Y  D  Q  C  L  E  F  L  E  S  N  K  M  L  T  R  *  Y  S  S  H  L  D  Q  R  L  R  Y  H  K  S  K  S  M  R  L  L  W  V  *  N  R  A  T  V  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  I  K  S  *  R  L  N  Y  P  K  G  L  K  *  E  W  K  E  E  E  *  W  L  I  G  Q  H  N  *  N  S  W  D  I  H  R  Q  G  G  L  *  V  T  V  D  G  I  H  V  S  R  A  L  T  W  E  Y  L  *  L  L  G  Q  S  V  S  I  S  H  L  T  L  Y  L  *  L  I  C  W  R  L  E  S  L  S  S  V  G  L  T  A  M  N  W  *  K  H  Q  P  *  R  N  L  S  R  H  *  R  V  P  *  K  G  K  K  *  G  K  R  Q  W  N  *  A  K  R  S  K  T  L  L  A  T  E  D  L  H  A  R  P  W  N  H  S  Y  H  I  *  L  N  N  F  T  V  E  V  C  F  *  L  R  C  Y  A  I  V  I  F  S  K  I  S  L  I  F  K  I  V  L  N  F  K  L  C  V  Y  D  V  Y  C  K  S  F  N  A  *  *  N  Y  *  K  S  F  Q  S  I  E  R  H  F   </first_frame>
            <second_frame>  C  F  A  N  V  N  E  Y  L  K  L  R  V  Q  G  D  V  R  A  S  N  I  Y  F  D  N  L  L  R  P  S  S  P  T  Q  K  N  D  R  D  Q  A  T  S  L  C  V  M  I  N  A  *  N  F  S  N  Q  T  R  C  *  L  G  D  T  H  L  I  W  I  N  D  Y  V  I  T  R  A  S  Q  *  D  C  S  G  F  R  T  E  Q  P  *  I  Y  L  G  T  K  K  R  R  *  R  G  E  T  *  R  *  S  R  K  D  *  I  T  R  R  V  *  S  K  S  G  R  K  R  N  N  G  *  L  G  N  T  I  R  I  L  G  T  F  I  D  R  G  V  Y  E  S  L  W  M  E  F  M  Y  R  E  H  *  H  G  S  T  Y  S  Y  *  A  N  Q  F  R  S  A  I  *  R  Y  T  C  N  *  F  V  G  D  W  N  H  C  Q  V  L  V  S  P  R  *  I  G  K  S  I  N  H  R  E  I  Y  R  D  I  D  E  Y  H  R  R  G  R  N  E  A  N  G  N  G  I  E  Q  K  D  Q  K  L  C  *  P  R  R  T  C  T  R  G  H  G  I  I  H  I  T  Y  N  *  I  T  S  P  L  K  F  A  F  S  Y  V  V  M  Q  *  *  F  L  A  K  *  V  *  Y  L  R  L  F  *  I  S  N  Y  V  F  M  M  S  I  V  S  P  S  T  L  N  K  I  I  E  S  H  F  N  L  L  R  D  I  F  </second_frame>
            <third_frame>   V  L  L  M  L  T  N  I  *  N  F  A  F  K  V  M  *  E  L  Q  T  S  I  S  I  T  C  *  D  L  H  L  Q  R  K  K  M  I  A  I  K  Q  H  H  S  A  L  *  S  M  P  R  I  S  R  I  K  Q  D  V  N  S  V  I  L  I  S  S  G  S  T  T  T  L  S  Q  E  Q  V  N  E  I  A  L  G  L  E  Q  S  N  R  R  F  I  W  V  L  R  K  G  D  N  A  E  K  L  K  D  K  V  V  K  I  E  L  P  E  G  F  E  V  R  V  E  G  R  G  I  M  V  N  W  A  T  Q  L  E  F  L  G  H  S  S  T  G  G  F  M  S  H  C  G  W  N  S  C  I  E  S  I  N  M  G  V  P  I  A  T  R  P  I  S  F  D  Q  P  F  N  A  I  L  V  T  N  L  L  E  I  G  I  T  V  K  C  W  S  H  R  D  E  L  V  K  A  S  T  I  E  K  S  I  E  T  L  T  S  T  I  E  G  E  E  M  R  Q  T  A  M  E  L  S  K  K  I  K  N  S  V  S  H  G  G  L  A  R  E  A  M  E  S  F  I  S  H  I  I  E  *  L  H  R  *  S  L  L  L  V  T  L  L  C  N  S  N  F  *  Q  N  K  F  D  I  *  D  C  F  K  F  Q  I  M  C  L  *  C  L  L  *  V  L  Q  R  L  I  K  L  L  K  V  I  S  I  Y  *  E  T  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17296" stop="16667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMPRISRIKQDVNSVILISSGSTTTLSQEQVNEIALGLEQSNRRFIWVLRKGDNAEKLKDKVVKIELPEGFEVRVEGRGIMVNWATQLEFLGHSSTGGFMSHCGWNSCIESINMGVPIATRPISFDQPFNAILVTNLLEIGITVKCWSHRDELVKASTIEKSIETLTSTIEGEEMRQTAMELSKKIKNSVSHGGLAREAMESFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19968" PGL_stop="19507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19968" e_stop="19507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="19968" e_stop="19507" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19968" stop="19507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCAAAAAATTTTATATCATTTTTGATAAATTTAATTACCACATATGAATTTGAGTAAAAATCTTTGTTCAAAAATTGTGATAAATAATTCTCGGGTAACTATTTTTATACGTAAAAATCATTTATCTTTTTTCATCTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACTAAGACTTTCTTTCAAATCTGAATCTTTATAGTTAATTTTCATTTATCTTCATATTTGGAAAATATAAATTTTTTGTATATAAAAAAGAAAAAAAACTGTGTTAGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGATGATAGATAGGGAGTGAGATGTTTTCTTTTTTGAAAAAAATGTAAATAAAGAAGAAAATATTTTTTAAGTTATTTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAATGAAAAA</gDNA_template>
            <first_frame> S  F  K  K  F  Y  I  I  F  D  K  F  N  Y  H  I  *  I  *  V  K  I  F  V  Q  K  L  *  *  I  I  L  G  *  L  F  L  Y  V  K  I  I  Y  L  F  S  S  S  S  Y  L  F  L  V  F  M  R  F  E  I  N  H  T  K  T  F  F  Q  I  *  I  F  I  V  N  F  H  L  S  S  Y  L  E  N  I  N  F  L  Y  I  K  K  K  K  N  C  V  R  A  K  M  K  K  V  L  *  T  K  L  *  R  R  *  *  I  G  S  E  M  F  S  F  L  K  K  M  *  I  K  K  K  I  F  F  K  L  F  I  M  P  S  V  N  K  R  R  K  N  V  K  K  N  E  K </first_frame>
            <second_frame>  L  S  K  N  F  I  S  F  L  I  N  L  I  T  T  Y  E  F  E  *  K  S  L  F  K  N  C  D  K  *  F  S  G  N  Y  F  Y  T  *  K  S  F  I  F  F  H  L  L  H  T  C  S  L  F  L  *  D  L  K  *  I  I  L  R  L  S  F  K  S  E  S  L  *  L  I  F  I  Y  L  H  I  W  K  I  *  I  F  C  I  *  K  R  K  K  T  V  L  E  L  K  *  R  K  F  C  K  L  N  Y  E  E  D  D  R  *  G  V  R  C  F  L  F  *  K  K  C  K  *  R  R  K  Y  F  L  S  Y  L  *  C  Q  V  S  I  K  E  E  K  M  *  K  K  M  K   </second_frame>
            <third_frame>   F  Q  K  I  L  Y  H  F  *  *  I  *  L  P  H  M  N  L  S  K  N  L  C  S  K  I  V  I  N  N  S  R  V  T  I  F  I  R  K  N  H  L  S  F  F  I  F  F  I  L  V  P  C  F  Y  E  I  *  N  K  S  Y  *  D  F  L  S  N  L  N  L  Y  S  *  F  S  F  I  F  I  F  G  K  Y  K  F  F  V  Y  K  K  E  K  K  L  C  *  S  *  N  E  E  S  F  V  N  *  I  M  K  K  M  I  D  R  E  *  D  V  F  F  F  E  K  N  V  N  K  E  E  N  I  F  *  V  I  Y  N  A  K  C  Q  *  K  K  K  K  C  K  K  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="31315" PGL_stop="30326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31315" e_stop="30326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="31315" e_stop="30326" e_length="990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31315" stop="30613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31279" stop="30748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31158" stop="30404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31090" stop="30326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31039" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTTCTTCTCTTATTTTCTTCCAATGTCTACAAACTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGCCGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACTTCATTTGGGTACTAAGACAAGCAGATAAAAAGATGGAAACTGAAAATTTTGAAGAGAATGATGAGAAGATTGAATTGC</gDNA_template>
            <first_frame> S  V  L  L  L  F  S  S  N  V  Y  K  L  I  K  Q  C  C  S  P  *  *  S  D  C  S  H  G  A  I  S  *  F  *  P  S  Q  S  A  L  R  C  C  S  F  H  H  F  S  *  Y  T  S  T  L  H  L  P  C  *  S  *  P  R  F  E  T  S  R  P  R  W  A  I  C  L  K  H  P  F  S  *  P  F  G  T  F  F  S  *  R  G  *  W  F  A  F  D  C  Y  I  Y  E  K  A  R  R  A  Y  *  K  N  V  Y  *  Y  L  Y  Q  R  E  E  I  G  Y  N  S  *  F  H  N  D  G  S  Y  K  G  C  S  F  I  D  P  E  R  G  V  L  *  V  P  R  H  F  N  F  C  N  I  L  W  A  P  T  K  Y  *  S  L  S  C  *  *  *  *  *  *  S  *  K  N  D  Q  T  N  A  R  *  I  S  V  V  G  *  M  L  W  T  L  C  S  R  E  L  E  K  N  M  N  G  S  S  T  R  E  I  S  S  T  R  A  E  K  S  K  V  S  T  W  I  Y  L  H  I  Q  Q  T  G  S  I  G  L  L  V  Q  F  I  C  C  *  N  H  A  T  L  A  T  *  R  R  M  S  V  *  N  F  *  T  S  K  T  L  T  Q  *  Y  T  S  R  L  E  R  L  L  L  *  H  K  S  K  S  M  S  S  R  L  V  *  N  R  A  I  V  T  S  F  G  Y  *  D  K  Q  I  K  R  W  K  L  K  I  L  K  R  M  M  R  R  L  N  C </first_frame>
            <second_frame>  Q  F  F  S  Y  F  L  P  M  S  T  N  S  S  N  N  V  V  H  L  D  E  V  I  V  A  M  V  P  F  P  D  F  S  H  L  N  Q  L  Y  V  V  A  R  F  I  T  S  H  N  I  P  V  H  F  I  C  L  A  D  R  N  Q  D  L  K  H  R  V  Q  G  G  L  S  A  S  N  I  H  F  H  D  L  L  V  P  S  S  L  D  A  G  N  G  L  P  S  I  V  I  F  M  K  K  L  V  E  P  I  R  R  T  C  I  D  I  S  T  N  A  K  R  L  V  I  I  H  D  S  I  M  M  D  H  I  R  D  V  H  S  L  I  P  N  V  E  S  Y  K  F  H  A  I  S  T  F  A  I  Y  S  G  L  R  Q  S  I  D  H  L  V  V  D  D  D  D  D  D  H  E  K  M  I  K  Q  M  H  D  E  F  P  L  L  D  R  C  C  G  P  Y  A  A  A  S  *  K  R  T  *  M  E  A  Q  L  G  K  Y  H  Q  L  V  Q  R  S  R  K  *  V  R  G  F  T  C  T  Y  N  R  Q  A  V  L  G  C  W  S  S  S  Y  V  A  R  I  T  R  L  *  Q  H  D  E  E  *  V  Y  R  I  S  R  Q  A  R  R  *  L  S  N  I  R  L  V  W  N  D  Y  Y  F  N  T  R  A  S  Q  *  A  R  V  W  F  R  T  E  Q  S  *  L  H  L  G  T  K  T  S  R  *  K  D  G  N  *  K  F  *  R  E  *  *  E  D  *  I   </second_frame>
            <third_frame>   S  S  S  L  I  F  F  Q  C  L  Q  T  H  Q  T  M  L  F  T  L  M  K  *  L  *  P  W  C  H  F  L  I  L  A  I  S  I  S  S  T  L  L  L  V  S  S  L  L  I  I  Y  Q  Y  T  S  S  A  L  L  I  V  T  K  I  *  N  I  A  S  K  V  G  Y  L  P  Q  T  S  I  F  M  T  F  W  Y  L  L  L  L  T  R  V  M  V  C  L  R  L  L  Y  L  *  K  S  S  S  S  L  L  E  E  R  V  L  I  S  L  P  T  R  R  D  W  L  *  F  M  I  P  *  *  W  I  I  *  G  M  F  I  H  *  S  R  T  W  S  L  I  S  S  T  P  F  Q  L  L  Q  Y  T  L  G  S  D  K  V  L  I  T  *  L  L  M  M  M  M  M  I  M  K  K  *  S  N  K  C  T  M  N  F  R  C  W  I  D  V  V  D  L  M  Q  P  R  V  R  K  E  H  E  W  K  L  N  S  G  N  I  I  N  S  C  R  E  V  E  S  K  Y  V  D  L  L  A  H  T  T  D  R  Q  Y  W  A  V  G  P  V  H  M  L  L  E  S  R  D  S  S  N  M  T  K  N  E  C  I  E  F  L  D  K  Q  D  V  N  S  V  I  Y  V  S  F  G  T  T  T  T  L  T  Q  E  Q  V  N  E  L  A  F  G  L  E  Q  S  N  R  N  F  I  W  V  L  R  Q  A  D  K  K  M  E  T  E  N  F  E  E  N  D  E  K  I  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31314" stop="30703"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFFSYFLPMSTNSSNNVVHLDEVIVAMVPFPDFSHLNQLYVVARFITSHNIPVHFICLADRNQDLKHRVQGGLSASNIHFHDLLVPSSLDAGNGLPSIVIFMKKLVEPIRRTCIDISTNAKRLVIIHDSIMMDHIRDVHSLIPNVESYKFHAISTFAIYSGLRQSIDHLVVDDDDDDHEKMIKQMHDEFPLLDRCCGPYAAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45256" PGL_stop="37303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45256" e_stop="45200"/>
            <exon e_start="43845" e_stop="43730"/>
            <exon e_start="43073" e_stop="42948"/>
            <exon e_start="42329" e_stop="42227"/>
            <exon e_start="41983" e_stop="41911"/>
            <exon e_start="41081" e_stop="41016"/>
            <exon e_start="40907" e_stop="40790"/>
            <exon e_start="40085" e_stop="39924"/>
            <exon e_start="39368" e_stop="39243"/>
            <exon e_start="38965" e_stop="38840"/>
            <exon e_start="38592" e_stop="38413"/>
            <exon e_start="37383" e_stop="37303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.301" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.851" e_score="0.992"/>
          <exon-intron don_prob="0.397" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.944"/>
          <exon-only e_score="0.790"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45256" e_stop="45200" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.895">
            <gDNA_intron_boundary i_start="45199" i_stop="43846" i_length="1354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43845" e_stop="43730" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.907">
            <gDNA_intron_boundary i_start="43729" i_stop="43074" i_length="656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43073" e_stop="42948" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="0.815">
            <gDNA_intron_boundary i_start="42947" i_stop="42330" i_length="618"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42329" e_stop="42227" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.988">
            <gDNA_intron_boundary i_start="42226" i_stop="41984" i_length="243"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41983" e_stop="41911" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41910" i_stop="41082" i_length="829"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41081" e_stop="41016" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.679" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41015" i_stop="40908" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40907" e_stop="40790" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="0.832">
            <gDNA_intron_boundary i_start="40789" i_stop="40086" i_length="704"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40085" e_stop="39924" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.851">
            <gDNA_intron_boundary i_start="39923" i_stop="39369" i_length="555"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="39368" e_stop="39243" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.851">
            <gDNA_intron_boundary i_start="39242" i_stop="38966" i_length="277"/>
          </intron>
          <exon e_serial="10" e_score="0.960">
            <gDNA_exon_boundary e_start="38965" e_stop="38840" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.397" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38839" i_stop="38593" i_length="247"/>
          </intron>
          <exon e_serial="11" e_score="0.944">
            <gDNA_exon_boundary e_start="38592" e_stop="38413" e_length="180"/>
          </exon>
          <intron i_serial="11" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38412" i_stop="37384" i_length="1029"/>
          </intron>
          <exon e_serial="12" e_score="0.790">
            <gDNA_exon_boundary e_start="37383" e_stop="37303" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45256" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
              <exon start="40085" stop="39924"/>
              <exon start="39368" stop="39347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45256" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
              <exon start="40085" stop="39924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45256" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45255" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45243" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
              <exon start="40085" stop="40015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45243" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45235" stop="45200"/>
              <exon start="43845" stop="43730"/>
              <exon start="43073" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
              <exon start="40085" stop="39941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43019" stop="42948"/>
              <exon start="42329" stop="42227"/>
              <exon start="41983" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41963" stop="41911"/>
              <exon start="41081" stop="41016"/>
              <exon start="40907" stop="40790"/>
              <exon start="40085" stop="39924"/>
              <exon start="39368" stop="39243"/>
              <exon start="38965" stop="38941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40085" stop="39924"/>
              <exon start="39368" stop="39243"/>
              <exon start="38965" stop="38840"/>
              <exon start="38592" stop="38413"/>
              <exon start="37383" stop="37303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40048" stop="39924"/>
              <exon start="39368" stop="39243"/>
              <exon start="38965" stop="38947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595848" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG : GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG : GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT : GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG : CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG : ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG : TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG : CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG : CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG : GTAGTCAGAGTTGTCATCTTGACTCTTAGGAATTTGCTTGCCAGAGGGTCATTTGGTTCTCAAATGGTAGACCTGGATGTGCTGCAAATTGTACAGAGCTTGAAAGCGCAGGCCTGGAGTGATGAG : GACCTTTTGGACGCTCTGAATCAACTTGAAGGAGGATTGAAGGCCAACATCAAAAAAATGAGTTCGTACGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAAGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGAGGAGAACGGATTTCAG : ATTTTGAGAGTGCTCATGACGATTTTGGATACATCAAATGATTCAAGGACACTTGCTGTAGCTTGCTATGACTTGTCACAG</gDNA_template>
            <first_frame> L  F  Q  I  S  T  P  I  C  G  T  S  V  H  H  H  L  H  M  :  V  E  G  N  N  R  F  *  I  F  L  F  H  *  R  I  S  D  F  Q  I  G  R  I  *  S  Q  *  Q  L  K  T  V  S  S  P  P  S  R :   F  *  G  G  I  F  H  G  R  L  T  *  P  R  S  *  S  V  E  Q  I  F  S  C  *  G  V  M  I  K  W  L  K  A  T  N  L  S  C  W  I  M :   T  V  Q  L  I  S  V  F  L  L  L  L  Y  E  I  S  S  R  T  K  P  W  N  M  F  *  L  *  L  M  K  C  L  Q  :  Q  T  Q  E  E  R  D  Y  S  M  I  A  L  Y  P  M  K  T  L  M  N  L  S  S   : D  F  F  G  K  V  I  G  S  S  K  R  R  A  V  R  F  S  L  *  *  *   : V  P  G  Q  M  F  R  M  L  L  M  Q  M  E  M  P  R  V  Q  R  G  H  S  P  L  W  K  I  F  *  M  A  *  *  I  G  Y  A  H  S :   *  E  S  L  L  I  L  V  V  A  F  P  L  Q  S  I  V  L  Q  H  C  *  R  S  L  L  F  D  V  H  L  F  N  L  M  E  *  S  C  S  F  L  *  F  H  Q  H  L  L  S  S  P  F  S :   F  S  T  R  H  V  Y  A  F  G  F  C  L  T  M  N  L  Q  L  S  T  W  L  L  L  G  P  Y  L  D  *  L  K  L  L  K  V  R  Q  R  R  R :   *  S  E  L  S  S  *  L  L  G  I  C  L  P  E  G  H  L  V  L  K  W  *  T  W  M  C  C  K  L  Y  R  A  *  K  R  R  P  G  V  M  R :   T  F  W  T  L  *  I  N  L  K  E  D  *  R  P  T  S  K  K  *  V  R  T  I  S  T  S  R  K  S  Y  L  A  V  L  I  G  P  P  C  I  K  I  L  Y  S  G  R  K  I  *  L  V  S  R  R  T  D  F  R :   F  *  E  C  S  *  R  F  W  I  H  Q  M  I  Q  G  H  L  L  *  L  A  M  T  C  H   </first_frame>
            <second_frame>  S  F  R  F  Q  L  P  S  V  A  P  L  F  I  T  I  F  I  W :   L  K  E  T  T  D  S  E  F  S  C  F  I  R  G  Y  Q  I  F  R  S  E  E  Y  N  H  N  D  N  *  K  R  *  A  H  H  R  A   : G  F  E  E  G  Y  S  M  G  D  L  H  D  H  E  A  D  Q  W  N  R  S  S  A  V  E  A  L  *  *  N  G  *  K  L  Q  I  S  V  A  G  *   : *  R  S  S  L  Y  P  C  F  C  Y  Y  F  T  R  Y  L  Q  G  R  N  R  G  I  C  F  S  F  N  *  *  N  A  Y  S :   K  P  K  K  S  E  I  I  P  *  *  L  F  I  Q  *  R  H  L  *  T  F  P  Q  :  I  S  L  E  R  *  L  V  H  P  R  E  E  L  *  D  S  L  F  D  S  E  :  C  Q  A  K  C  S  E  C  C  *  C  K  W  R  C  L  E  F  K  E  D  T  H  H  Y  G  K  Y  S  E  W  P  S  R  L  A  M  L  T   : A  E  K  A  F  S  S  *  L  *  H  S  L  C  N  Q  L  S  C  N  T  V  E  G  A  C  C  S  T  F  I  C  S  I  *  W  S  E  A  A  H  S  F  N  F  T  S  I  Y  S  A  V  H  S   : A  S  L  R  D  M  S  M  R  L  A  S  V  L  L  *  T  C  N  *  V  L  G  Y  F  *  G  P  T  S  I  D  *  S  C  *  R  F  D  K  G  E   : G  S  Q  S  C  H  L  D  S  *  E  F  A  C  Q  R  V  I  W  F  S  N  G  R  P  G  C  A  A  N  C  T  E  L  E  S  A  G  L  E  *  *   : G  P  F  G  R  S  E  S  T  *  R  R  I  E  G  Q  H  Q  K  N  E  F  V  R  *  V  Q  A  G  S  P  T  W  Q  S  *  L  V  P  H  A  *  R  S  S  I  L  E  G  K  Y  N  L  F  R  G  E  R  I  S   : D  F  E  S  A  H  D  D  F  G  Y  I  K  *  F  K  D  T  C  C  S  L  L  *  L  V  T  </second_frame>
            <third_frame>   L  S  D  F  N  S  H  L  W  H  L  C  S  S  P  S  S  Y   : G  *  R  K  Q  Q  I  L  N  F  L  V  S  L  E  D  I  R  F  S  D  R  K  N  I  I  T  M  T  I  E  N  G  E  L  T  T  E  Q  :  V  L  R  R  D  I  P  W  E  T  Y  M  T  T  K  L  I  S  G  T  D  L  Q  L  L  R  R  Y  D  K  M  A  E  S  Y  K  S  Q  L  L  D  N  :  D  G  P  A  Y  I  R  V  F  V  T  T  L  R  D  I  F  K  D  E  T  V  E  Y  V  L  A  L  I  D  E  M  L  T   : A  N  P  R  R  A  R  L  F  H  D  S  S  L  S  N  E  D  T  Y  E  P  F  L  R :   F  L  W  K  G  N  W  F  I  Q  E  K  S  C  K  I  L  S  L  I  V  S :   A  R  P  N  V  Q  N  V  A  D  A  N  G  D  A  S  S  S  K  R  T  L  T  T  M  E  N  I  L  N  G  L  V  D  W  L  C  S  Q  :  L  R  K  P  S  H  P  S  C  S  I  P  S  A  I  N  C  L  A  T  L  L  K  E  P  V  V  R  R  S  F  V  Q  S  D  G  V  K  L  L  I  P  L  I  S  P  A  S  T  Q  Q  S  I  Q  :  L  L  Y  E  T  C  L  C  V  W  L  L  S  Y  Y  E  P  A  I  E  Y  L  A  T  S  R  A  L  P  R  L  I  E  V  V  K  G  S  T  K  E  K  :  V  V  R  V  V  I  L  T  L  R  N  L  L  A  R  G  S  F  G  S  Q  M  V  D  L  D  V  L  Q  I  V  Q  S  L  K  A  Q  A  W  S  D  E  :  D  L  L  D  A  L  N  Q  L  E  G  G  L  K  A  N  I  K  K  M  S  S  Y  D  K  Y  K  Q  E  V  L  L  G  S  L  D  W  S  P  M  H  K  D  P  L  F  W  K  E  N  I  T  C  F  E  E  N  G  F  Q  :  I  L  R  V  L  M  T  I  L  D  T  S  N  D  S  R  T  L  A  V  A  C  Y  D  L  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43840" stop="43730"/>
                    <exon start="43073" stop="42948"/>
                    <exon start="42329" stop="42227"/>
                    <exon start="41983" stop="41911"/>
                    <exon start="41081" stop="41016"/>
                    <exon start="40907" stop="40790"/>
                    <exon start="40085" stop="39924"/>
                    <exon start="39368" stop="39243"/>
                    <exon start="38965" stop="38840"/>
                    <exon start="38592" stop="38413"/>
                    <exon start="37383" stop="37303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1272</number_coding_nucleotides>
                  <number_encoded_amino_acids>424</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQQILNFLVSLEDIRFSDRKNIITMTIENGELTTEQVLRRDIPWETYMTTKLISGTDLQLLRRYDKMAESYKSQLLDNDGPAYIRVFVTTLRDIFKDETVEYVLALIDEMLTANPRRARLFHDSSLSNEDTYEPFLRFLWKGNWFIQEKSCKILSLIVSARPNVQNVADANGDASSSKRTLTTMENILNGLVDWLCSQLRKPSHPSCSIPSAINCLATLLKEPVVRRSFVQSDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRALPRLIEVVKGSTKEKVVRVVILTLRNLLARGSFGSQMVDLDVLQIVQSLKAQAWSDEDLLDALNQLEGGLKANIKKMSSYDKYKQEVLLGSLDWSPMHKDPLFWKENITCFEENGFQILRVLMTILDTSNDSRTLAVACYDLSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52943" PGL_stop="53861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52943" e_stop="53861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="52943" e_stop="53861" e_length="919"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52943" stop="53597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52944" stop="53680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52944" stop="53535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52949" stop="53861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52950" stop="53350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52954" stop="53353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52955" stop="53477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="53851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53393" stop="53852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53450" stop="53852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGAATG</gDNA_template>
            <first_frame> S  Q  T  R  H  *  E  I  L  S  N  L  L  L  L  L  S  Q  L  *  N  N  K  K  W  R  L  L  H  G  D  Q  P  D  R  C  S  V  H  Y  L  P  P  A  D  F  T  H  R  H  L  E  L  R  R  L  L  L  H  R  S  G  L  H  W  T  V  K  L  P  Q  A  G  L  F  P  *  *  T  G  R  K  H  W  L  L  L  R  R  R  G  V  C  V  R  R  R  I  I  Q  V  R  S  V  V  V  C  I  R  K  W  I  F  D  G  V  V  V  L  A  K  R  R  R  I  R  F  D  C  I  *  G  D  R  R  *  R  I  R  *  C  E  S  E  L  L  K  V  S  L  L  K  E  L  *  R  L  *  F  V  L  L  R  I  N  S  V  A  V  P  I  S  N  A  D  L  V  D  F  P  L  F  P  V  P  V  T  H  K  S  V  I  L  S  L  E  I  S  F  N  N  A  C  C  A  D  S  *  R  R  S  G  R  I  S  I  V  S  G  A  G  D  T  *  D  V  N  R  A  V  R  S  L  L  F  C  *  M  L  T  S  A  I  D  V  W  P  *  S  N  V  S  C  N  E  V  A  A  A  N  W  S  V  H  G  G  G  R  N  G  T  T  F  L  C  T  P  V  T  K  T  L  G  S  I  C  L  I  V  *  N  T  *  R  K  L  *  N  H  S  V  L  L  I  M  N  </first_frame>
            <second_frame>  A  K  R  G  T  K  K  Y  S  P  I  F  F  F  F  S  L  N  C  K  T  T  K  N  G  G  F  C  T  A  I  N  R  T  G  A  P  F  I  I  S  R  R  Q  I  L  L  I  V  I  *  N  F  V  V  F  C  F  I  D  P  V  Y  T  G  P  *  N  F  P  K  P  V  Y  F  R  N  E  P  A  E  N  T  G  F  F  S  E  E  E  V  Y  V  F  A  D  E  S  S  R  F  V  P  L  *  Y  A  *  E  N  G  Y  S  T  E  *  *  Y  *  P  N  G  V  E  F  D  S  I  A  Y  E  A  I  G  D  D  E  F  V  S  A  N  R  N  C  *  R  *  A  C  *  K  S  F  S  G  F  D  S  S  F  F  A  S  T  A  S  P  F  R  F  P  T  P  T  *  S  T  F  R  Y  F  Q  F  R  *  L  I  S  Q  L  F  F  L  *  K  F  H  S  T  T  R  A  A  P  I  L  S  A  D  L  A  G  S  P  L  F  P  V  P  V  I  R  R  T  *  I  E  L  L  E  V  C  F  S  V  E  C  *  P  Q  Q  S  M  S  G  R  E  V  T  S  A  A  T  R  W  R  R  R  T  G  V  Y  T  V  E  V  G  T  E  Q  L  F  C  V  L  R  *  P  K  R  *  D  P  Y  V  *  *  S  K  I  H  E  E  N  Y  K  I  I  Q  F  S  *  L  *  M </second_frame>
            <third_frame>   P  N  A  A  L  R  N  T  L  Q  S  S  S  S  S  L  S  T  V  K  Q  Q  K  M  A  A  S  A  R  R  S  T  G  P  V  L  R  S  L  S  P  A  G  R  F  Y  S  S  S  S  R  T  S  S  S  S  A  S  S  I  R  F  T  L  D  R  E  T  S  P  S  R  S  I  S  V  M  N  R  Q  K  T  L  A  S  S  Q  K  K  R  C  M  C  S  P  T  N  H  P  G  S  F  R  C  S  M  H  K  K  M  D  I  R  R  S  S  S  T  S  Q  T  A  S  N  S  I  R  L  H  M  R  R  S  A  M  T  N  S  L  V  R  I  G  T  V  E  G  E  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  Q  Q  R  R  R  S  D  F  Q  R  R  P  S  R  L  S  V  I  S  S  S  G  D  S  *  V  S  Y  S  F  S  R  N  F  I  Q  Q  R  V  L  R  R  F  L  A  Q  I  W  P  D  L  H  C  F  R  C  R  *  Y  V  G  R  E  *  S  C  *  K  F  A  F  L  L  N  A  D  L  S  N  R  C  L  A  V  K  *  R  Q  L  Q  R  G  G  G  G  E  L  E  C  T  R  W  R  S  E  R  N  N  F  F  V  Y  S  G  D  Q  N  V  R  I  H  M  S  N  S  L  K  Y  M  K  K  I  I  K  S  F  S  S  P  N  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52945" stop="53508"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNAALRNTLQSSSSSLSTVKQQKMAASARRSTGPVLRSLSPAGRFYSSSSRTSSSSASSIRFTLDRETSPSRSISVMNRQKTLASSQKKRCMCSPTNHPGSFRCSMHKKMDIRRSSSTSQTASNSIRLHMRRSAMTNSLVRIGTVEGELVKRALAALIRPSSHQQRRRSDFQRRPSRLSVISSSGDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66638" PGL_stop="69517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66638" e_stop="66972"/>
            <exon e_start="68654" e_stop="68712"/>
            <exon e_start="68808" e_stop="69517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.887"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.887">
            <gDNA_exon_boundary e_start="66638" e_stop="66972" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66973" i_stop="68653" i_length="1681"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68654" e_stop="68712" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="68713" i_stop="68807" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68808" e_stop="69517" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66638" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66680" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66700" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66700" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66701" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66786" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66792" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66894" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66908" stop="66972"/>
              <exon start="68654" stop="68712"/>
              <exon start="68808" stop="69263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68854" stop="69325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68912" stop="69325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270785" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68918" stop="69331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68943" stop="69307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68951" stop="69332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68960" stop="69325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69086" stop="69380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69118" stop="69380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69129" stop="69517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69129" stop="69517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACCCTAATTCCCCTTTTCTTTTTTTTTCAAAATATTTCTTCAATTTCCTTTAGGACAGTCAAACCCTACCCTGCCCTAAAAACCCCACACCCCCTTTCTACTTCTCTTTCCAGAAAGTTTTGATTTTGGGATTTTGGGTTTTCTTGAACTCTCTGTTTCTTTGCATTTTTTTGGGTTGTTTTGTTTTTTTTGGGAGTAAAAATGGAGGTGTGTAGTTTGAGGTCTGATGTAGCTGTTTTTGGAAGAATGGTGGTGGGGTCTGTTCTTGAAGCTGTAGTTGCTGAAATCCTTTTGGCTGCTCAGAGATCTGCTGCTTCTTTGCTCATTGTG : GCAGGAATTATGCTCAAGGATGCTGATTCATTGCCAGATCTGATAGGAACTGATAAAAG : GTTTCCATTTGAGGAGCTTCATAAAATGGACAAAGCTGGGCCTGAGAACAAAGATGGTAGCGACACAGAGGATGATGATGAAGATGACGATGGAGAAGCTGATGATCAGGATGACGATGATGCTGATGACGAAGACTTTTCAGGCGAAGGAGGAGAGGATGATGATGATGATGAAGCAGATCCCGAAGACAATCCAGCATCTAATGGCAATGAAGGCAGCGATGATGAAGACGACGACGACGACGATGATGATGAGGACGGGGATGATGAGGAGGAGGAGGAAGACGATGACGAAGAGGAGGAGGAGGATCAACCACCTGCCAAGAAGAAAAAATAAACCATTTCCTAGTATGTTTATTCTGTTTTTCTTCCATGCTTGTTGGAGTATGTAGTAGTTGTAGGAAGAAGGGGAATTTTAGCTCTTCTGTTGGAATTAATCATCCTTTTGCAGACAAAATGAACTTCTTGTCACCCTATTTGACTGTTAGTTATGATATATATTCCATTTAACCCTATAAATACTCTTCTAATATTCATGCCTCTTTACCTCCACTAGGTAAGGATAAGGTCTACGTACACTACCTTTCTCGAATTCTACTAGTGGGATTTCACTAGATATGTTGTACTCTTTTCGAATCCTACTAGTAGGATTTCACTGGATATTTCTTACTCTTTTCAAATCCTACCTATGGCCTGTGGAATTTCACTGG</gDNA_template>
            <first_frame> S  K  P  *  F  P  F  S  F  F  F  K  I  F  L  Q  F  P  L  G  Q  S  N  P  T  L  P  *  K  P  H  T  P  F  L  L  L  F  P  E  S  F  D  F  G  I  L  G  F  L  E  L  S  V  S  L  H  F  F  G  L  F  C  F  F  W  E  *  K  W  R  C  V  V  *  G  L  M  *  L  F  L  E  E  W  W  W  G  L  F  L  K  L  *  L  L  K  S  F  W  L  L  R  D  L  L  L  L  C  S  L  W :   Q  E  L  C  S  R  M  L  I  H  C  Q  I  *  *  E  L  I  K   : G  F  H  L  R  S  F  I  K  W  T  K  L  G  L  R  T  K  M  V  A  T  Q  R  M  M  M  K  M  T  M  E  K  L  M  I  R  M  T  M  M  L  M  T  K  T  F  Q  A  K  E  E  R  M  M  M  M  M  K  Q  I  P  K  T  I  Q  H  L  M  A  M  K  A  A  M  M  K  T  T  T  T  T  M  M  M  R  T  G  M  M  R  R  R  R  K  T  M  T  K  R  R  R  R  I  N  H  L  P  R  R  K  N  K  P  F  P  S  M  F  I  L  F  F  F  H  A  C  W  S  M  *  *  L  *  E  E  G  E  F  *  L  F  C  W  N  *  S  S  F  C  R  Q  N  E  L  L  V  T  L  F  D  C  *  L  *  Y  I  F  H  L  T  L  *  I  L  F  *  Y  S  C  L  F  T  S  T  R  *  G  *  G  L  R  T  L  P  F  S  N  S  T  S  G  I  S  L  D  M  L  Y  S  F  R  I  L  L  V  G  F  H  W  I  F  L  T  L  F  K  S  Y  L  W  P  V  E  F  H  W </first_frame>
            <second_frame>  Q  N  P  N  S  P  F  L  F  F  S  K  Y  F  F  N  F  L  *  D  S  Q  T  L  P  C  P  K  N  P  T  P  P  F  Y  F  S  F  Q  K  V  L  I  L  G  F  W  V  F  L  N  S  L  F  L  C  I  F  L  G  C  F  V  F  F  G  S  K  N  G  G  V  *  F  E  V  *  C  S  C  F  W  K  N  G  G  G  V  C  S  *  S  C  S  C  *  N  P  F  G  C  S  E  I  C  C  F  F  A  H  C   : G  R  N  Y  A  Q  G  C  *  F  I  A  R  S  D  R  N  *  *  K  :  V  S  I  *  G  A  S  *  N  G  Q  S  W  A  *  E  Q  R  W  *  R  H  R  G  *  *  *  R  *  R  W  R  S  *  *  S  G  *  R  *  C  *  *  R  R  L  F  R  R  R  R  R  G  *  *  *  *  *  S  R  S  R  R  Q  S  S  I  *  W  Q  *  R  Q  R  *  *  R  R  R  R  R  R  *  *  *  G  R  G  *  *  G  G  G  G  R  R  *  R  R  G  G  G  G  S  T  T  C  Q  E  E  K  I  N  H  F  L  V  C  L  F  C  F  S  S  M  L  V  G  V  C  S  S  C  R  K  K  G  N  F  S  S  S  V  G  I  N  H  P  F  A  D  K  M  N  F  L  S  P  Y  L  T  V  S  Y  D  I  Y  S  I  *  P  Y  K  Y  S  S  N  I  H  A  S  L  P  P  L  G  K  D  K  V  Y  V  H  Y  L  S  R  I  L  L  V  G  F  H  *  I  C  C  T  L  F  E  S  Y  *  *  D  F  T  G  Y  F  L  L  F  S  N  P  T  Y  G  L  W  N  F  T   </second_frame>
            <third_frame>   K  T  L  I  P  L  F  F  F  F  Q  N  I  S  S  I  S  F  R  T  V  K  P  Y  P  A  L  K  T  P  H  P  L  S  T  S  L  S  R  K  F  *  F  W  D  F  G  F  S  *  T  L  C  F  F  A  F  F  W  V  V  L  F  F  L  G  V  K  M  E  V  C  S  L  R  S  D  V  A  V  F  G  R  M  V  V  G  S  V  L  E  A  V  V  A  E  I  L  L  A  A  Q  R  S  A  A  S  L  L  I  V  :  A  G  I  M  L  K  D  A  D  S  L  P  D  L  I  G  T  D  K  R :   F  P  F  E  E  L  H  K  M  D  K  A  G  P  E  N  K  D  G  S  D  T  E  D  D  D  E  D  D  D  G  E  A  D  D  Q  D  D  D  D  A  D  D  E  D  F  S  G  E  G  G  E  D  D  D  D  D  E  A  D  P  E  D  N  P  A  S  N  G  N  E  G  S  D  D  E  D  D  D  D  D  D  D  D  E  D  G  D  D  E  E  E  E  E  D  D  D  E  E  E  E  E  D  Q  P  P  A  K  K  K  K  *  T  I  S  *  Y  V  Y  S  V  F  L  P  C  L  L  E  Y  V  V  V  V  G  R  R  G  I  L  A  L  L  L  E  L  I  I  L  L  Q  T  K  *  T  S  C  H  P  I  *  L  L  V  M  I  Y  I  P  F  N  P  I  N  T  L  L  I  F  M  P  L  Y  L  H  *  V  R  I  R  S  T  Y  T  T  F  L  E  F  Y  *  W  D  F  T  R  Y  V  V  L  F  S  N  P  T  S  R  I  S  L  D  I  S  Y  S  F  Q  I  L  P  M  A  C  G  I  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66790" stop="66972"/>
                    <exon start="68654" stop="68712"/>
                    <exon start="68808" stop="69144"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLCFFAFFWVVLFFLGVKMEVCSLRSDVAVFGRMVVGSVLEAVVAEILLAAQRSAASLLIVAGIMLKDADSLPDLIGTDKRFPFEELHKMDKAGPENKDGSDTEDDDEDDDGEADDQDDDDADDEDFSGEGGEDDDDDEADPEDNPASNGNEGSDDEDDDDDDDDEDGDDEEEEEDDDEEEEEDQPPAKKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="69320" PGL_stop="69067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69320" e_stop="69067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="69320" e_stop="69067" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69320" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTAAATGGAATATATATCATAACTAACAGTCAAATAGGGTGACAAGAAGTTCATTTTGTCTGCAAAAGGATGATTAATTCCAACAGAAGAGCTAAAATTCCCCTTCTTCCTACAACTACTACATACTCCAACAAGCATGGAAGAAAAACAGAATAAACATACTAGGAAATGGTTTATTTTTTCTTCTTGGCAGGTGGTTGATCCTCCTCCTCCTCTTCGTCATCGTCTTCCTCCTCCTCCTCATCATCCCC</gDNA_template>
            <first_frame> G  L  N  G  I  Y  I  I  T  N  S  Q  I  G  *  Q  E  V  H  F  V  C  K  R  M  I  N  S  N  R  R  A  K  I  P  L  L  P  T  T  T  T  Y  S  N  K  H  G  R  K  T  E  *  T  Y  *  E  M  V  Y  F  F  F  L  A  G  G  *  S  S  S  S  S  S  S  S  S  S  S  S  S  S  S  S   </first_frame>
            <second_frame>  G  *  M  E  Y  I  S  *  L  T  V  K  *  G  D  K  K  F  I  L  S  A  K  G  *  L  I  P  T  E  E  L  K  F  P  F  F  L  Q  L  L  H  T  P  T  S  M  E  E  K  Q  N  K  H  T  R  K  W  F  I  F  S  S  W  Q  V  V  D  P  P  P  P  L  R  H  R  L  P  P  P  P  H  H  P  </second_frame>
            <third_frame>   V  K  W  N  I  Y  H  N  *  Q  S  N  R  V  T  R  S  S  F  C  L  Q  K  D  D  *  F  Q  Q  K  S  *  N  S  P  S  S  Y  N  Y  Y  I  L  Q  Q  A  W  K  K  N  R  I  N  I  L  G  N  G  L  F  F  L  L  G  R  W  L  I  L  L  L  L  F  V  I  V  F  L  L  L  L  I  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="72184" PGL_stop="71757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72184" e_stop="71757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="72184" e_stop="71757" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72184" stop="71757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGATCCACACAAGGCTGCTGTCATTGGTGACACTGTTGGTGACCCCCTCAAGGATACATCTGGACCATCATTGAACATTCTTATCAAGCTGATGGCTGTGGAGTCACTCGTTTTCGCTCCTTTCTTCGCCACCCACGGTGGTCTGCTCTTCAAGATGTTTTAAGACAAAACCAACTCAACTGCATCGAATTTCCATCTGGTGATGTTTTTACTCCTTTTGCCTACTTTATTTCGAGCAATTTTTCGTGTTCATCGATAGATTAGGATATGTAGGTTTGTGGAGAACTAGTGATGATAGCGAAATGTTTATGAAGAGTTTAGAAAAATCCAACATTCTTTTCTTAAAGAGTAAAATGTATCCTATATAGATAGTATATAGTATATTTATACTTTTAGAGAAGTTGAAAATTTTGTAAGCTTTTATTTC</gDNA_template>
            <first_frame> P  I  H  T  R  L  L  S  L  V  T  L  L  V  T  P  S  R  I  H  L  D  H  H  *  T  F  L  S  S  *  W  L  W  S  H  S  F  S  L  L  S  S  P  P  T  V  V  C  S  S  R  C  F  K  T  K  P  T  Q  L  H  R  I  S  I  W  *  C  F  Y  S  F  C  L  L  Y  F  E  Q  F  F  V  F  I  D  R  L  G  Y  V  G  L  W  R  T  S  D  D  S  E  M  F  M  K  S  L  E  K  S  N  I  L  F  L  K  S  K  M  Y  P  I  *  I  V  Y  S  I  F  I  L  L  E  K  L  K  I  L  *  A  F  I   </first_frame>
            <second_frame>  R  S  T  Q  G  C  C  H  W  *  H  C  W  *  P  P  Q  G  Y  I  W  T  I  I  E  H  S  Y  Q  A  D  G  C  G  V  T  R  F  R  S  F  L  R  H  P  R  W  S  A  L  Q  D  V  L  R  Q  N  Q  L  N  C  I  E  F  P  S  G  D  V  F  T  P  F  A  Y  F  I  S  S  N  F  S  C  S  S  I  D  *  D  M  *  V  C  G  E  L  V  M  I  A  K  C  L  *  R  V  *  K  N  P  T  F  F  S  *  R  V  K  C  I  L  Y  R  *  Y  I  V  Y  L  Y  F  *  R  S  *  K  F  C  K  L  L  F  </second_frame>
            <third_frame>   D  P  H  K  A  A  V  I  G  D  T  V  G  D  P  L  K  D  T  S  G  P  S  L  N  I  L  I  K  L  M  A  V  E  S  L  V  F  A  P  F  F  A  T  H  G  G  L  L  F  K  M  F  *  D  K  T  N  S  T  A  S  N  F  H  L  V  M  F  L  L  L  L  P  T  L  F  R  A  I  F  R  V  H  R  *  I  R  I  C  R  F  V  E  N  *  *  *  *  R  N  V  Y  E  E  F  R  K  I  Q  H  S  F  L  K  E  *  N  V  S  Y  I  D  S  I  *  Y  I  Y  T  F  R  E  V  E  N  F  V  S  F  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72141" stop="71920"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPQGYIWTIIEHSYQADGCGVTRFRSFLRHPRWSALQDVLRQNQLNCIEFPSGDVFTPFAYFISSNFSCSSID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73206" PGL_stop="72536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73206" e_stop="73027"/>
            <exon e_start="72707" e_stop="72536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.894"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="73206" e_stop="73027" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73026" i_stop="72708" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="72707" e_stop="72536" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73206" stop="73027"/>
              <exon start="72707" stop="72536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTTAGCTTCAGTTTTGCTGCAATGTACGGCATTGCAGTTGCTGCTCTCGGAATGCTGAGCACGATAGCTACTGGTTTGGCAATTGACGCCTATGGTCCCATCAGTGACAACGCAGGAGGCATTGCCGAGATGGCTGGAATGAGCCACAGAATAAGAGAAAGAACCGATGCCCTAGA : TGCTGCCCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAACACCATCCCTGGACTCATGGAAGGAACCGCAAAGCCTGATTATGCCAACTGCGTCAAGATCTCCACCGATGCATCAATCAAAGAAATGATCCCACCTGGTGCCCTTGTCATGCTTACTCCATTGATTGTA</gDNA_template>
            <first_frame> F  C  *  L  Q  F  C  C  N  V  R  H  C  S  C  C  S  R  N  A  E  H  D  S  Y  W  F  G  N  *  R  L  W  S  H  Q  *  Q  R  R  R  H  C  R  D  G  W  N  E  P  Q  N  K  R  K  N  R  C  P  R  :  C  C  P  *  D  G  *  G  S  A  Q  A  I  Q  H  H  P  W  T  H  G  R  N  R  K  A  *  L  C  Q  L  R  Q  D  L  H  R  C  I  N  Q  R  N  D  P  T  W  C  P  C  H  A  Y  S  I  D  C  </first_frame>
            <second_frame>  F  V  S  F  S  F  A  A  M  Y  G  I  A  V  A  A  L  G  M  L  S  T  I  A  T  G  L  A  I  D  A  Y  G  P  I  S  D  N  A  G  G  I  A  E  M  A  G  M  S  H  R  I  R  E  R  T  D  A  L  D :   A  A  L  K  M  V  E  E  V  R  R  Q  F  N  T  I  P  G  L  M  E  G  T  A  K  P  D  Y  A  N  C  V  K  I  S  T  D  A  S  I  K  E  M  I  P  P  G  A  L  V  M  L  T  P  L  I  V </second_frame>
            <third_frame>   L  L  A  S  V  L  L  Q  C  T  A  L  Q  L  L  L  S  E  C  *  A  R  *  L  L  V  W  Q  L  T  P  M  V  P  S  V  T  T  Q  E  A  L  P  R  W  L  E  *  A  T  E  *  E  K  E  P  M  P  *   : M  L  P  L  R  W  L  R  K  C  A  G  N  S  T  P  S  L  D  S  W  K  E  P  Q  S  L  I  M  P  T  A  S  R  S  P  P  M  H  Q  S  K  K  *  S  H  L  V  P  L  S  C  L  L  H  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73205" stop="73027"/>
                    <exon start="72707" stop="72536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAALKMVEEVRRQFNTIPGLMEGTAKPDYANCVKISTDASIKEMIPPGALVMLTPLIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73078" e_stop="72993"/>
            <exon e_start="72880" e_stop="72608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.930"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="73078" e_stop="72993" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72992" i_stop="72881" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="72880" e_stop="72608" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72993"/>
              <exon start="72880" stop="72608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGAGATGGCTGGAATGAGCCACAGAATAAGAGAAAGAACCGATGCCCTAGATGCTGCAGGAAACACCACTGCTGCTATTGGAAAG : GGATTCGCGATTGGATCTGCTGCTCTTGTATCTCTAGCCCTCTTTGGTGCATTTGTGAGTCGTGCAGGAATTTCTACTGTAGATGTCTTGACACCTAAAGTATTCATTGGCTTGCTCGTCGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGCTGCCCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAACACCATCCCTGGACTCATGGAAGGAACCGCAAAGCCTGATTATGCCAACTGCGTCAAG</gDNA_template>
            <first_frame> P  R  W  L  E  *  A  T  E  *  E  K  E  P  M  P  *  M  L  Q  E  T  P  L  L  L  L  E  R :   D  S  R  L  D  L  L  L  L  Y  L  *  P  S  L  V  H  L  *  V  V  Q  E  F  L  L  *  M  S  *  H  L  K  Y  S  L  A  C  S  S  V  Q  C  F  L  T  G  S  L  P  *  Q  *  R  V  W  E  V  L  P  L  R  W  L  R  K  C  A  G  N  S  T  P  S  L  D  S  W  K  E  P  Q  S  L  I  M  P  T  A  S   </first_frame>
            <second_frame>  R  D  G  W  N  E  P  Q  N  K  R  K  N  R  C  P  R  C  C  R  K  H  H  C  C  Y  W  K   : G  I  R  D  W  I  C  C  S  C  I  S  S  P  L  W  C  I  C  E  S  C  R  N  F  Y  C  R  C  L  D  T  *  S  I  H  W  L  A  R  R  C  N  A  S  L  L  V  L  C  H  D  N  E  E  C  G  K  C  C  P  *  D  G  *  G  S  A  Q  A  I  Q  H  H  P  W  T  H  G  R  N  R  K  A  *  L  C  Q  L  R  Q  </second_frame>
            <third_frame>   E  M  A  G  M  S  H  R  I  R  E  R  T  D  A  L  D  A  A  G  N  T  T  A  A  I  G  K  :  G  F  A  I  G  S  A  A  L  V  S  L  A  L  F  G  A  F  V  S  R  A  G  I  S  T  V  D  V  L  T  P  K  V  F  I  G  L  L  V  G  A  M  L  P  Y  W  F  S  A  M  T  M  K  S  V  G  S  A  A  L  K  M  V  E  E  V  R  R  Q  F  N  T  I  P  G  L  M  E  G  T  A  K  P  D  Y  A  N  C  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73076" stop="72993"/>
                    <exon start="72880" stop="72608"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGISTVDVLTPKVFIGLLVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYANCVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="76391" PGL_stop="74703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76391" e_stop="75993"/>
            <exon e_start="74779" e_stop="74703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76391" e_stop="75993" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="75992" i_stop="74780" i_length="1213"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74779" e_stop="74703" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76391" stop="75993"/>
              <exon start="74779" stop="74703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATCTGCTATCTCTTCATCTTCTTCTCTTATTTATTTATTTTTCCCATTCACGTTTTTTTTTCTTCCATCTCTCTCACTTTTTTCACTATTTTCTCTCTCTAAATCACACTTTCTCTCTCTCTAGATTTGTCGGTGATGGGAACAACAATTCTGCCAGATCTCGGAACGGAGATTCTGATTCCGGTGTGTGCAGTTATCGGAATCGGATTTGCGTTGGTACAATGGGTGATTGTTTCGAAAGTTACGGTATCGACTGATGGTAAATCGTCATCTCCCGGTGCCGGCGCTGATGGTAAGAATGGATATGCTGAATCGCTTATTGAAGAAGAAGAAGGGATTAATGACCATAGCGTTGTTCGTAAGTGTGCTGAAATTCAAAATGCCATTGCTGAAG : GTGCAACCTCGTTCCTGTTTACGGAATACCAGTATGTTGGTGTTTTCATGGTTGCTTTTGCATTACTGATCTTTCTA</gDNA_template>
            <first_frame> N  K  S  A  I  S  S  S  S  S  L  I  Y  L  F  F  P  F  T  F  F  F  L  P  S  L  S  L  F  S  L  F  S  L  S  K  S  H  F  L  S  L  *  I  C  R  *  W  E  Q  Q  F  C  Q  I  S  E  R  R  F  *  F  R  C  V  Q  L  S  E  S  D  L  R  W  Y  N  G  *  L  F  R  K  L  R  Y  R  L  M  V  N  R  H  L  P  V  P  A  L  M  V  R  M  D  M  L  N  R  L  L  K  K  K  K  G  L  M  T  I  A  L  F  V  S  V  L  K  F  K  M  P  L  L  K  :  V  Q  P  R  S  C  L  R  N  T  S  M  L  V  F  S  W  L  L  L  H  Y  *  S  F   </first_frame>
            <second_frame>  T  N  L  L  S  L  H  L  L  L  L  F  I  Y  F  S  H  S  R  F  F  F  F  H  L  S  H  F  F  H  Y  F  L  S  L  N  H  T  F  S  L  S  R  F  V  G  D  G  N  N  N  S  A  R  S  R  N  G  D  S  D  S  G  V  C  S  Y  R  N  R  I  C  V  G  T  M  G  D  C  F  E  S  Y  G  I  D  *  W  *  I  V  I  S  R  C  R  R  *  W  *  E  W  I  C  *  I  A  Y  *  R  R  R  R  D  *  *  P  *  R  C  S  *  V  C  *  N  S  K  C  H  C  *  R :   C  N  L  V  P  V  Y  G  I  P  V  C  W  C  F  H  G  C  F  C  I  T  D  L  S  </second_frame>
            <third_frame>   Q  I  C  Y  L  F  I  F  F  S  Y  L  F  I  F  P  I  H  V  F  F  S  S  I  S  L  T  F  F  T  I  F  S  L  *  I  T  L  S  L  S  L  D  L  S  V  M  G  T  T  I  L  P  D  L  G  T  E  I  L  I  P  V  C  A  V  I  G  I  G  F  A  L  V  Q  W  V  I  V  S  K  V  T  V  S  T  D  G  K  S  S  S  P  G  A  G  A  D  G  K  N  G  Y  A  E  S  L  I  E  E  E  E  G  I  N  D  H  S  V  V  R  K  C  A  E  I  Q  N  A  I  A  E   : G  A  T  S  F  L  F  T  E  Y  Q  Y  V  G  V  F  M  V  A  F  A  L  L  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76284" stop="75993"/>
                    <exon start="74779" stop="74703"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLSLSLDLSVMGTTILPDLGTEILIPVCAVIGIGFALVQWVIVSKVTVSTDGKSSSPGAGADGKNGYAESLIEEEEGINDHSVVRKCAEIQNAIAEGATSFLFTEYQYVGVFMVAFALLIFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="82512" PGL_stop="87330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82602" e_stop="82724"/>
            <exon e_start="84881" e_stop="84921"/>
            <exon e_start="85274" e_stop="85571"/>
            <exon e_start="86741" e_stop="87330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82602" e_stop="82724" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82725" i_stop="84880" i_length="2156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84881" e_stop="84921" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.899">
            <gDNA_intron_boundary i_start="84922" i_stop="85273" i_length="352"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85274" e_stop="85571" e_length="298"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85572" i_stop="86740" i_length="1169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86741" e_stop="87330" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82602" stop="82724"/>
              <exon start="84881" stop="84921"/>
              <exon start="85274" stop="85571"/>
              <exon start="86741" stop="86889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82676" stop="82724"/>
              <exon start="84881" stop="84921"/>
              <exon start="85274" stop="85571"/>
              <exon start="86741" stop="87110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85414" stop="85571"/>
              <exon start="86741" stop="87203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85474" stop="85571"/>
              <exon start="86741" stop="87330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTCTAAAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTG : ACCAGCTGCCTCCACCTGGAATGGATGCCTTGTCGAGACAG : ACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAG : AGAGTAAACCTCAAAAACCAGAAAGTGTTGGCGTTGCGCCCAGTTTACTGGCAACAAATGCAACGTCTTCCAACGTCACCAAGCAGTTTTGCGGATTATGTCAGAAGCCTTTGAGAAAGAAACACTATATGCTCGATAGCAACATACCTTCCTACGAGCCCTCTGTTGTGGCAGTTTTAGTTTGTGGTCATCTTTACCATGCTGATTGTTTGGAGGAAAGAACTCATCATGACAATGCAACAGATCCTCCCTGCCCGATCTGTCGTGGCATCAATTGAGTAGGTTTGCTTCTCTACCTGAATGTAGATAACCTCAGATGCAGATTCAGGATTTGAAAAGCTCCGAGTTGTGTAGACATATATACATATGTCTTAAGATCTCGATACAATGTAACTATCTGTTATGTTTATATATAGTTCGAGTCAAAGGTGCGCGTTTAATCTTTTGGATACCAGATGTATTGAGAGGGCAATGTAGCTTACAAGATGCATCAACAATCAGTATAAACTTTTCAGTGTTTTCTTTGAAAATATTTGTGATGTATTAGTCTAACTCTAATAGAATTTATATAAGTCATTAGTTTATGACAA</gDNA_template>
            <first_frame> *  F  S  K  K  F  *  S  C  *  V  Y  M  K  L  A  L  W  V  C  V  *  N  L  W  G  R  E  R  E  E  L  I  S  I  K  L  I  L  L  L  :  T  S  C  L  H  L  E  W  M  P  C  R  D  R :   P  L  I  K  L  M  S  M  Q  Q  S  L  S  H  Q  L  W  I  S  *  M  I  L  Q  R  Q  H  N  V  N  N  H  P  L  F  T  V  E  I  L  T  R  Q  C  V  Q  R  I  L  I  T  T  M  G  S  I  I  L  D  G  G  L  L  I  M  L  R  H  Q  L  P  V  V  G  P  L  L  F  M  M  S  *  C  L  Q  S  Q  L  V  N  A  T  R  I  L  D  M  T  Q  :  R  V  N  L  K  N  Q  K  V  L  A  L  R  P  V  Y  W  Q  Q  M  Q  R  L  P  T  S  P  S  S  F  A  D  Y  V  R  S  L  *  E  R  N  T  I  C  S  I  A  T  Y  L  P  T  S  P  L  L  W  Q  F  *  F  V  V  I  F  T  M  L  I  V  W  R  K  E  L  I  M  T  M  Q  Q  I  L  P  A  R  S  V  V  A  S  I  E  *  V  C  F  S  T  *  M  *  I  T  S  D  A  D  S  G  F  E  K  L  R  V  V  *  T  Y  I  H  M  S  *  D  L  D  T  M  *  L  S  V  M  F  I  Y  S  S  S  Q  R  C  A  F  N  L  L  D  T  R  C  I  E  R  A  M  *  L  T  R  C  I  N  N  Q  Y  K  L  F  S  V  F  F  E  N  I  C  D  V  L  V  *  L  *  *  N  L  Y  K  S  L  V  Y  D   </first_frame>
            <second_frame>  D  F  L  K  S  F  N  L  V  E  F  T  *  N  W  L  C  G  C  V  F  K  T  Y  G  E  E  K  E  K  S  *  S  Q  *  N  S  F  S  Y  * :   P  A  A  S  T  W  N  G  C  L  V  E  T   : D  L  S  S  S  *  C  L  C  N  K  V  F  L  I  N  Y  G  Y  H  R  *  F  F  K  G  N  T  M  S  T  T  I  H  C  S  P  S  K  Y  *  P  G  N  V  F  K  E  S  S  S  L  L  W  A  P  L  Y  S  T  E  V  F  *  *  C  *  G  I  N  F  P  W  W  D  H  F  F  L  *  *  A  D  V  C  K  V  S  *  *  M  Q  L  G  F  W  T  *  H  R :   E  *  T  S  K  T  R  K  C  W  R  C  A  Q  F  T  G  N  K  C  N  V  F  Q  R  H  Q  A  V  L  R  I  M  S  E  A  F  E  K  E  T  L  Y  A  R  *  Q  H  T  F  L  R  A  L  C  C  G  S  F  S  L  W  S  S  L  P  C  *  L  F  G  G  K  N  S  S  *  Q  C  N  R  S  S  L  P  D  L  S  W  H  Q  L  S  R  F  A  S  L  P  E  C  R  *  P  Q  M  Q  I  Q  D  L  K  S  S  E  L  C  R  H  I  Y  I  C  L  K  I  S  I  Q  C  N  Y  L  L  C  L  Y  I  V  R  V  K  G  A  R  L  I  F  W  I  P  D  V  L  R  G  Q  C  S  L  Q  D  A  S  T  I  S  I  N  F  S  V  F  S  L  K  I  F  V  M  Y  *  S  N  S  N  R  I  Y  I  S  H  *  F  M  T  </second_frame>
            <third_frame>   I  F  *  K  V  L  I  L  L  S  L  H  E  I  G  F  V  G  V  C  L  K  L  M  G  K  R  K  R  R  A  D  L  N  K  T  H  S  L  T   : D  Q  L  P  P  P  G  M  D  A  L  S  R  Q  :  T  S  H  Q  V  D  V  Y  A  T  K  S  F  S  S  I  M  D  I  I  D  D  S  S  K  A  T  Q  C  Q  Q  P  S  I  V  H  R  R  N  I  D  Q  A  M  C  S  K  N  P  H  H  Y  Y  G  L  H  Y  T  R  R  R  S  S  N  N  A  E  A  S  T  S  R  G  G  T  T  S  F  Y  D  E  L  M  S  A  K  S  A  S  K  C  N  S  D  S  G  H  D  T   : E  S  K  P  Q  K  P  E  S  V  G  V  A  P  S  L  L  A  T  N  A  T  S  S  N  V  T  K  Q  F  C  G  L  C  Q  K  P  L  R  K  K  H  Y  M  L  D  S  N  I  P  S  Y  E  P  S  V  V  A  V  L  V  C  G  H  L  Y  H  A  D  C  L  E  E  R  T  H  H  D  N  A  T  D  P  P  C  P  I  C  R  G  I  N  *  V  G  L  L  L  Y  L  N  V  D  N  L  R  C  R  F  R  I  *  K  A  P  S  C  V  D  I  Y  T  Y  V  L  R  S  R  Y  N  V  T  I  C  Y  V  Y  I  *  F  E  S  K  V  R  V  *  S  F  G  Y  Q  M  Y  *  E  G  N  V  A  Y  K  M  H  Q  Q  S  V  *  T  F  Q  C  F  L  *  K  Y  L  *  C  I  S  L  T  L  I  E  F  I  *  V  I  S  L  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82613" stop="82724"/>
                    <exon start="84881" stop="84921"/>
                    <exon start="85274" stop="85571"/>
                    <exon start="86741" stop="87018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLILLSLHEIGFVGVCLKLMGKRKRRADLNKTHSLTDQLPPPGMDALSRQTSHQVDVYATKSFSSIMDIIDDSSKATQCQQPSIVHRRNIDQAMCSKNPHHYYGLHYTRRRSSNNAEASTSRGGTTSFYDELMSAKSASKCNSDSGHDTESKPQKPESVGVAPSLLATNATSSNVTKQFCGLCQKPLRKKHYMLDSNIPSYEPSVVAVLVCGHLYHADCLEERTHHDNATDPPCPICRGIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87051" stop="87287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQMQIQDLKSSELCRHIYICLKISIQCNYLLCLYIVRVKGARLIFWIPDVLRGQCSLQDASTISINFSVFSLKIFVMY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82818" e_stop="83038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="82818" e_stop="83038" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82818" stop="83038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGGAATTATGCAATGCTAGTAAGCGGCGGAGCCAGTATTTTCACTAGGTTACGAAATATGAATAGTAAGGGGTTCAAAATTCACTTTTGTTGTCTTATAAATAGTTTAATTTGTTGTCGAATGGGGTTCGAATGAAGCCCTTGACCCTACCTGGCTCCGCCCTCCAAAAAAGGTGTTTAGATTGGGGGTTGTGGTTATAGGTTGTTAATTGAGAAATT</gDNA_template>
            <first_frame> T  W  N  Y  A  M  L  V  S  G  G  A  S  I  F  T  R  L  R  N  M  N  S  K  G  F  K  I  H  F  C  C  L  I  N  S  L  I  C  C  R  M  G  F  E  *  S  P  *  P  Y  L  A  P  P  S  K  K  G  V  *  I  G  G  C  G  Y  R  L  L  I  E  K   </first_frame>
            <second_frame>  L  G  I  M  Q  C  *  *  A  A  E  P  V  F  S  L  G  Y  E  I  *  I  V  R  G  S  K  F  T  F  V  V  L  *  I  V  *  F  V  V  E  W  G  S  N  E  A  L  D  P  T  W  L  R  P  P  K  K  V  F  R  L  G  V  V  V  I  G  C  *  L  R  N  </second_frame>
            <third_frame>   L  E  L  C  N  A  S  K  R  R  S  Q  Y  F  H  *  V  T  K  Y  E  *  *  G  V  Q  N  S  L  L  L  S  Y  K  *  F  N  L  L  S  N  G  V  R  M  K  P  L  T  L  P  G  S  A  L  Q  K  R  C  L  D  W  G  L  W  L  *  V  V  N  *  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="82512" e_stop="82724"/>
            <exon e_start="85274" e_stop="85716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.899" e_score="0.972"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="82512" e_stop="82724" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.899">
            <gDNA_intron_boundary i_start="82725" i_stop="85273" i_length="2549"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="85274" e_stop="85716" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82512" stop="82724"/>
              <exon start="85274" stop="85716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCCCACCCCACCCCCCAAAGAATCCATTTTTTCCCAAATTAAGCAATTAACTACCCAAAACCCCAAAAATTAGTGGCTAAATAGCCACTGATTTTCTAAAAAGTTTTAATCTTGTTGAGTTTACATGAAATTGGCTTTGTGGGTGTGTGTTTAAAACTTATGGGGAAGAGAAAGAGAAGAGCTGATCTCAATAAAACTCATTCTCTTACTG : ACCTCTCATCAAGTTGATGTCTATGCAACAAAGTCTTTCTCATCAATTATGGATATCATAGATGATTCTTCAAAGGCAACACAATGTCAACAACCATCCATTGTTCACCGTCGAAATATTGACCAGGCAATGTGTTCAAAGAATCCTCATCACTACTATGGGCTCCATTATACTCGACGGAGGTCTTCTAATAATGCTGAGGCATCAACTTCCCGTGGTGGGACCACTTCTTTTTATGATGAGCTGATGTCTGCAAAGTCAGCTAGTAAATGCAACTCGGATTCTGGACATGACACAGGTGCAACTTATTTCCTTATCTTTTTCCACATACATCTTGTGCAACTCCTTAGTAGTTGCACATGGATCTTGGTCTCGTTTGGAGGCCAAGTTCTTGTTTTGCCATCAAATGTAAGATAGTTCTAATAGAAATTAAAGGTGGCCTT</gDNA_template>
            <first_frame> T  P  T  P  P  P  K  E  S  I  F  S  Q  I  K  Q  L  T  T  Q  N  P  K  N  *  W  L  N  S  H  *  F  S  K  K  F  *  S  C  *  V  Y  M  K  L  A  L  W  V  C  V  *  N  L  W  G  R  E  R  E  E  L  I  S  I  K  L  I  L  L  L  :  T  S  H  Q  V  D  V  Y  A  T  K  S  F  S  S  I  M  D  I  I  D  D  S  S  K  A  T  Q  C  Q  Q  P  S  I  V  H  R  R  N  I  D  Q  A  M  C  S  K  N  P  H  H  Y  Y  G  L  H  Y  T  R  R  R  S  S  N  N  A  E  A  S  T  S  R  G  G  T  T  S  F  Y  D  E  L  M  S  A  K  S  A  S  K  C  N  S  D  S  G  H  D  T  G  A  T  Y  F  L  I  F  F  H  I  H  L  V  Q  L  L  S  S  C  T  W  I  L  V  S  F  G  G  Q  V  L  V  L  P  S  N  V  R  *  F  *  *  K  L  K  V  A   </first_frame>
            <second_frame>  P  P  P  H  P  P  K  N  P  F  F  P  K  L  S  N  *  L  P  K  T  P  K  I  S  G  *  I  A  T  D  F  L  K  S  F  N  L  V  E  F  T  *  N  W  L  C  G  C  V  F  K  T  Y  G  E  E  K  E  K  S  *  S  Q  *  N  S  F  S  Y  * :   P  L  I  K  L  M  S  M  Q  Q  S  L  S  H  Q  L  W  I  S  *  M  I  L  Q  R  Q  H  N  V  N  N  H  P  L  F  T  V  E  I  L  T  R  Q  C  V  Q  R  I  L  I  T  T  M  G  S  I  I  L  D  G  G  L  L  I  M  L  R  H  Q  L  P  V  V  G  P  L  L  F  M  M  S  *  C  L  Q  S  Q  L  V  N  A  T  R  I  L  D  M  T  Q  V  Q  L  I  S  L  S  F  S  T  Y  I  L  C  N  S  L  V  V  A  H  G  S  W  S  R  L  E  A  K  F  L  F  C  H  Q  M  *  D  S  S  N  R  N  *  R  W  P  </second_frame>
            <third_frame>   P  H  P  T  P  Q  R  I  H  F  F  P  N  *  A  I  N  Y  P  K  P  Q  K  L  V  A  K  *  P  L  I  F  *  K  V  L  I  L  L  S  L  H  E  I  G  F  V  G  V  C  L  K  L  M  G  K  R  K  R  R  A  D  L  N  K  T  H  S  L  T   : D  L  S  S  S  *  C  L  C  N  K  V  F  L  I  N  Y  G  Y  H  R  *  F  F  K  G  N  T  M  S  T  T  I  H  C  S  P  S  K  Y  *  P  G  N  V  F  K  E  S  S  S  L  L  W  A  P  L  Y  S  T  E  V  F  *  *  C  *  G  I  N  F  P  W  W  D  H  F  F  L  *  *  A  D  V  C  K  V  S  *  *  M  Q  L  G  F  W  T  *  H  R  C  N  L  F  P  Y  L  F  P  H  T  S  C  A  T  P  *  *  L  H  M  D  L  G  L  V  W  R  P  S  S  C  F  A  I  K  C  K  I  V  L  I  E  I  K  G  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82668" stop="82724"/>
                    <exon start="85274" stop="85690"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGREREELISIKLILLLTSHQVDVYATKSFSSIMDIIDDSSKATQCQQPSIVHRRNIDQAMCSKNPHHYYGLHYTRRRSSNNAEASTSRGGTTSFYDELMSAKSASKCNSDSGHDTGATYFLIFFHIHLVQLLSSCTWILVSFGGQVLVLPSNVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="88549" PGL_stop="89149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88549" e_stop="89149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="88549" e_stop="89149" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88549" stop="89149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88567" stop="88892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTCCTATTAACAGAAAGAGAAAAAAACTCCCCATTTCTCCATGCTTTCAACTCTCTGAAAATCCTTTAAAGGGTGTCCAATTCTTCCATTTTCTTGAAATTTTGTTGACCCTTTGTGTTTTTATAGCCATTTTCTCTTTTTTTAATCCCCAACTCTTTGATCTTGCCGGGAAAAAGAACCCCATTTTCCGGCAGGTCAAAGGAGTGGTGGATTCATTCTTTTCTTGATAATTTGAAATCTTTATGTGGATGGGTGTTTGGTTTTGATATACATTTGCTAAAAAGTGGAAAAAGATTTGAACTTTTTTACCAAATATAGAGATTTCAAGAATTGAGGAAAAATGGTGACTGAGGTGATTCCGGTGAGGAATCCAATAAGCACGGTATTGGAGAGAGTTGGGGTTTATGGGTTTGTAGGGAATAACAATATTACAAAGAGATGTAATATTGAATTTCAAGATGAAAATGATACAATGGAAATGGTGCAGCTTGGTGCTGAAAGGACAAAAAATGTGCTTATTTTGATGAGTGATACAGGGGGTGGGCATAGGGCTTCAGCTGAGGCTATTCGCGATGCGTTTCATTTGGAATTTGGGGATG</gDNA_template>
            <first_frame> I  S  Y  *  Q  K  E  K  K  T  P  H  F  S  M  L  S  T  L  *  K  S  F  K  G  C  P  I  L  P  F  S  *  N  F  V  D  P  L  C  F  Y  S  H  F  L  F  F  *  S  P  T  L  *  S  C  R  E  K  E  P  H  F  P  A  G  Q  R  S  G  G  F  I  L  F  L  I  I  *  N  L  Y  V  D  G  C  L  V  L  I  Y  I  C  *  K  V  E  K  D  L  N  F  F  T  K  Y  R  D  F  K  N  *  G  K  M  V  T  E  V  I  P  V  R  N  P  I  S  T  V  L  E  R  V  G  V  Y  G  F  V  G  N  N  N  I  T  K  R  C  N  I  E  F  Q  D  E  N  D  T  M  E  M  V  Q  L  G  A  E  R  T  K  N  V  L  I  L  M  S  D  T  G  G  G  H  R  A  S  A  E  A  I  R  D  A  F  H  L  E  F  G  D  </first_frame>
            <second_frame>  S  P  I  N  R  K  R  K  K  L  P  I  S  P  C  F  Q  L  S  E  N  P  L  K  G  V  Q  F  F  H  F  L  E  I  L  L  T  L  C  V  F  I  A  I  F  S  F  F  N  P  Q  L  F  D  L  A  G  K  K  N  P  I  F  R  Q  V  K  G  V  V  D  S  F  F  S  *  *  F  E  I  F  M  W  M  G  V  W  F  *  Y  T  F  A  K  K  W  K  K  I  *  T  F  L  P  N  I  E  I  S  R  I  E  E  K  W  *  L  R  *  F  R  *  G  I  Q  *  A  R  Y  W  R  E  L  G  F  M  G  L  *  G  I  T  I  L  Q  R  D  V  I  L  N  F  K  M  K  M  I  Q  W  K  W  C  S  L  V  L  K  G  Q  K  M  C  L  F  *  *  V  I  Q  G  V  G  I  G  L  Q  L  R  L  F  A  M  R  F  I  W  N  L  G  M </second_frame>
            <third_frame>   L  L  L  T  E  R  E  K  N  S  P  F  L  H  A  F  N  S  L  K  I  L  *  R  V  S  N  S  S  I  F  L  K  F  C  *  P  F  V  F  L  *  P  F  S  L  F  L  I  P  N  S  L  I  L  P  G  K  R  T  P  F  S  G  R  S  K  E  W  W  I  H  S  F  L  D  N  L  K  S  L  C  G  W  V  F  G  F  D  I  H  L  L  K  S  G  K  R  F  E  L  F  Y  Q  I  *  R  F  Q  E  L  R  K  N  G  D  *  G  D  S  G  E  E  S  N  K  H  G  I  G  E  S  W  G  L  W  V  C  R  E  *  Q  Y  Y  K  E  M  *  Y  *  I  S  R  *  K  *  Y  N  G  N  G  A  A  W  C  *  K  D  K  K  C  A  Y  F  D  E  *  Y  R  G  W  A  *  G  F  S  *  G  Y  S  R  C  V  S  F  G  I  W  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88885" stop="89148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKMVTEVIPVRNPISTVLERVGVYGFVGNNNITKRCNIEFQDENDTMEMVQLGAERTKNVLILMSDTGGGHRASAEAIRDAFHLEFGD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88550" stop="88777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPINRKRKKLPISPCFQLSENPLKGVQFFHFLEILLTLCVFIAIFSFFNPQLFDLAGKKNPIFRQVKGVVDSFFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="91806" PGL_stop="92965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91806" e_stop="91821"/>
            <exon e_start="91937" e_stop="91999"/>
            <exon e_start="92269" e_stop="92343"/>
            <exon e_start="92447" e_stop="92965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91806" e_stop="91821" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91822" i_stop="91936" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="91937" e_stop="91999" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92000" i_stop="92268" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92269" e_stop="92343" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92344" i_stop="92446" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="92447" e_stop="92965" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91806" stop="91821"/>
              <exon start="91937" stop="91999"/>
              <exon start="92269" stop="92343"/>
              <exon start="92447" stop="92965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91813" stop="91821"/>
              <exon start="91937" stop="91999"/>
              <exon start="92269" stop="92343"/>
              <exon start="92447" stop="92960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430976" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACATCCCAGTCAAG : ATTAAAGGATTTCAGAAACAGATGGAGAAGTGGATGGGCGCTTGCGACTGTATTATCACAAAG : GCTGGACCAGGTACAATTGCAGAAGCACTAATCAGAGGGCTGCCAATTATTCTCAACGACTACATTCCCGGACAA : GAAAAGGGAAACGTTCCATACGTTGTGGACAATGGAGCTGGTGTTTTCACACGAAGCCCCAAGGAAACAGCCCGGATTGTTGCAGAGTGGTTTAGCACCAAAGAGGATGAGCGCAAAACTATATCAGAGAATGCACTTAAACTTGCACAACCCGATGCAGTTTTTGACATCGTGAAGGACATCCACGAGCTTGCATGCCAGAGAGGTCCTCTCGCCAACATTCCTTACGAGTTCACGTCTTCATTTTCAAGCTTAATTTAAGCCAGATACATAGATTCTGGTTGTTTTTTTTGTCTTTTTTACTACAAGGTCTAATATTTGTTCTAGTAGGATATTATGTAAGGTAGGTTCAATGATCTCATTTTTAGCCATAAAACGCTTGGCGCGCTCATTGTAATCTGTAGATTGTCTAGACAAATTCCGATCCTTGGTTAGTCGGAGAAAAAAAGAAATTCAAAACGAGACCAGAACGAGGGAGCTGTGATAAAAATGCAGAAATTGAATGAAGTTTCATATGTT</gDNA_template>
            <first_frame> E  H  P  S  Q   : D  *  R  I  S  E  T  D  G  E  V  D  G  R  L  R  L  Y  Y  H  K   : G  W  T  R  Y  N  C  R  S  T  N  Q  R  A  A  N  Y  S  Q  R  L  H  S  R  T   : R  K  G  K  R  S  I  R  C  G  Q  W  S  W  C  F  H  T  K  P  Q  G  N  S  P  D  C  C  R  V  V  *  H  Q  R  G  *  A  Q  N  Y  I  R  E  C  T  *  T  C  T  T  R  C  S  F  *  H  R  E  G  H  P  R  A  C  M  P  E  R  S  S  R  Q  H  S  L  R  V  H  V  F  I  F  K  L  N  L  S  Q  I  H  R  F  W  L  F  F  L  S  F  L  L  Q  G  L  I  F  V  L  V  G  Y  Y  V  R  *  V  Q  *  S  H  F  *  P  *  N  A  W  R  A  H  C  N  L  *  I  V  *  T  N  S  D  P  W  L  V  G  E  K  K  K  F  K  T  R  P  E  R  G  S  C  D  K  N  A  E  I  E  *  S  F  I  C  </first_frame>
            <second_frame>  N  I  P  V  K  :  I  K  G  F  Q  K  Q  M  E  K  W  M  G  A  C  D  C  I  I  T  K  :  A  G  P  G  T  I  A  E  A  L  I  R  G  L  P  I  I  L  N  D  Y  I  P  G  Q  :  E  K  G  N  V  P  Y  V  V  D  N  G  A  G  V  F  T  R  S  P  K  E  T  A  R  I  V  A  E  W  F  S  T  K  E  D  E  R  K  T  I  S  E  N  A  L  K  L  A  Q  P  D  A  V  F  D  I  V  K  D  I  H  E  L  A  C  Q  R  G  P  L  A  N  I  P  Y  E  F  T  S  S  F  S  S  L  I  *  A  R  Y  I  D  S  G  C  F  F  C  L  F  Y  Y  K  V  *  Y  L  F  *  *  D  I  M  *  G  R  F  N  D  L  I  F  S  H  K  T  L  G  A  L  I  V  I  C  R  L  S  R  Q  I  P  I  L  G  *  S  E  K  K  R  N  S  K  R  D  Q  N  E  G  A  V  I  K  M  Q  K  L  N  E  V  S  Y  V </second_frame>
            <third_frame>   T  S  Q  S  R :   L  K  D  F  R  N  R  W  R  S  G  W  A  L  A  T  V  L  S  Q  R :   L  D  Q  V  Q  L  Q  K  H  *  S  E  G  C  Q  L  F  S  T  T  T  F  P  D  K :   K  R  E  T  F  H  T  L  W  T  M  E  L  V  F  S  H  E  A  P  R  K  Q  P  G  L  L  Q  S  G  L  A  P  K  R  M  S  A  K  L  Y  Q  R  M  H  L  N  L  H  N  P  M  Q  F  L  T  S  *  R  T  S  T  S  L  H  A  R  E  V  L  S  P  T  F  L  T  S  S  R  L  H  F  Q  A  *  F  K  P  D  T  *  I  L  V  V  F  F  V  F  F  T  T  R  S  N  I  C  S  S  R  I  L  C  K  V  G  S  M  I  S  F  L  A  I  K  R  L  A  R  S  L  *  S  V  D  C  L  D  K  F  R  S  L  V  S  R  R  K  K  E  I  Q  N  E  T  R  T  R  E  L  *  *  K  C  R  N  *  M  K  F  H  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91807" stop="91821"/>
                    <exon start="91937" stop="91999"/>
                    <exon start="92269" stop="92343"/>
                    <exon start="92447" stop="92707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIPVKIKGFQKQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVAEWFSTKEDERKTISENALKLAQPDAVFDIVKDIHELACQRGPLANIPYEFTSSFSSLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="94472" PGL_stop="97822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94515" e_stop="94555"/>
            <exon e_start="95013" e_stop="95226"/>
            <exon e_start="96435" e_stop="96534"/>
            <exon e_start="97441" e_stop="97822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.685" e_score="1.000"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94515" e_stop="94555" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95013" e_stop="95226" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96435" e_stop="96534" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.685">
            <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906"/>
          </intron>
          <exon e_serial="4" e_score="0.924">
            <gDNA_exon_boundary e_start="97441" e_stop="97822" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94515" stop="94555"/>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94536" stop="94555"/>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95039" stop="95213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96444" stop="96534"/>
              <exon start="97441" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425556" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG : ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG : TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG : GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTTGTTTCTAATGATATTTGGTGTGTTTGAGGAA</gDNA_template>
            <first_frame> S  L  L  T  R  R  L  S  S  L  H  R  K  R :   F  E  L  L  N  V  I  W  K  F  *  M  G  D  I  D  D  I  A  K  E  K  R  V  V  F  V  T  V  G  T  T  S  F  D  A  L  V  R  A  V  D  T  P  E  V  K  K  E  L  F  K  K  G  Y  T  D  I  L  I  Q  M  G  R  G  L  Y  I  P  T  K  :  S  T  A  E  N  G  S  P  A  L  D  Y  F  T  Y  S  S  S  I  A  D  Y  L  K  S  A  S  L  V  I  S  H  A   : G  S  G  S  I  F  E  T  L  R  L  G  K  P  L  I  V  V  V  N  E  D  L  M  D  N  H  Q  S  E  L  A  E  E  L  A  E  R  K  H  L  Y  C  A  R  P  Q  T  L  Y  K  T  I  S  D  M  D  P  G  S  L  V  P  Y  Q  P  G  D  A  K  P  V  A  E  L  I  Y  R  Y  L  G  F  P  E  D  *  *  N  L  L  F  C  S  *  H  E  V  K  F  N  F  M  *  F  I  E  H  N  L  Y  P  *  I  F  C  Y  I  C  F  *  *  Y  L  V  C  L  R   </first_frame>
            <second_frame>  L  F  S  L  V  V  S  V  R  S  T  G  K   : D  L  N  C  *  M  *  F  G  N  S  K  W  V  I  *  M  I  L  R  R  R  R  E  *  F  L  *  P  W  G  Q  L  L  L  M  L  L  *  E  R  W  I  P  R  K  *  R  K  N  C  S  R  K  V  T  L  I  F  L  F  K  W  G  E  D  C  I  S  P  Q  S :   R  L  L  K  M  V  L  Q  L  W  I  T  S  H  I  H  Q  A  *  L  T  I  *  S  Q  H  H  L  L  S  A  T  Q  :  V  Q  G  A  Y  L  R  H  Y  D  W  A  N  R  *  *  W  *  S  M  R  I  *  W  T  T  I  K  A  S  S  Q  K  N  W  L  R  E  N  I  C  I  V  L  V  H  K  H  Y  T  R  L  Y  R  I  W  I  Q  G  L  L  F  H  I  N  Q  V  T  R  N  Q  L  L  N  L  Y  I  D  I  *  V  S  Q  R  I  D  E  T  Y  C  S  V  V  D  M  K  *  S  S  I  L  C  D  L  *  S  I  I  F  I  H  K  Y  S  V  I  F  V  S  N  D  I  W  C  V  *  G  </second_frame>
            <third_frame>   S  S  H  S  S  S  Q  F  A  P  P  E  K  :  I  *  I  V  E  C  N  L  E  I  L  N  G  *  Y  R  *  Y  C  E  G  E  E  S  S  F  C  D  R  G  D  N  F  F  *  C  S  C  K  S  G  G  Y  P  G  S  E  E  R  T  V  Q  E  R  L  H  *  Y  S  Y  S  N  G  A  R  I  V  Y  P  H  K   : V  D  C  *  K  W  F  S  S  S  G  L  L  H  I  F  I  K  H  S  *  L  F  E  V  S  I  T  C  Y  Q  P  R  R :   F  R  E  H  I  *  D  I  T  T  G  Q  T  V  N  S  G  S  Q  *  G  S  N  G  Q  P  S  K  R  A  R  R  R  T  G  *  E  K  T  F  V  L  C  S  S  T  N  I  I  Q  D  Y  I  G  Y  G  S  R  V  S  C  S  I  S  T  R  *  R  E  T  S  C  *  T  Y  I  *  I  F  R  F  P  R  G  L  M  K  L  I  V  L  *  L  T  *  S  E  V  Q  F  Y  V  I  Y  R  A  *  S  L  S  I  N  I  L  L  Y  L  F  L  M  I  F  G  V  F  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95047" stop="95226"/>
                    <exon start="96435" stop="96534"/>
                    <exon start="97441" stop="97697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDIDDIAKEKRVVFVTVGTTSFDALVRAVDTPEVKKELFKKGYTDILIQMGRGLYIPTKSTAENGSPALDYFTYSSSIADYLKSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCARPQTLYKTISDMDPGSLVPYQPGDAKPVAELIYRYLGFPED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94472" e_stop="94555"/>
            <exon e_start="94996" e_stop="95226"/>
            <exon e_start="96435" e_stop="96534"/>
            <exon e_start="97441" e_stop="97822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.726"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.930"/>
          <exon-intron don_prob="0.987" acc_prob="0.685" e_score="0.956"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.726">
            <gDNA_exon_boundary e_start="94472" e_stop="94555" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94556" i_stop="94995" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="94996" e_stop="95226" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="96435" e_stop="96534" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.685">
            <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906"/>
          </intron>
          <exon e_serial="4" e_score="0.924">
            <gDNA_exon_boundary e_start="97441" e_stop="97822" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94472" stop="94555"/>
              <exon start="94996" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94472" stop="94555"/>
              <exon start="94996" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95039" stop="95213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96444" stop="96534"/>
              <exon start="97441" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425556" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTACCGGTTTTCAGTCTCTCAATTGCCGGCCACCGAGCTCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG : GATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG : TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG : GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTTGTTTCTAATGATATTTGGTGTGTTTGAGGAA</gDNA_template>
            <first_frame> K  S  Y  R  F  S  V  S  Q  L  P  A  T  E  L  S  S  H  S  S  S  Q  F  A  P  P  E  K  :  D  N  V  N  C  R  F  E  L  L  N  V  I  W  K  F  *  M  G  D  I  D  D  I  A  K  E  K  R  V  V  F  V  T  V  G  T  T  S  F  D  A  L  V  R  A  V  D  T  P  E  V  K  K  E  L  F  K  K  G  Y  T  D  I  L  I  Q  M  G  R  G  L  Y  I  P  T  K  :  S  T  A  E  N  G  S  P  A  L  D  Y  F  T  Y  S  S  S  I  A  D  Y  L  K  S  A  S  L  V  I  S  H  A   : G  S  G  S  I  F  E  T  L  R  L  G  K  P  L  I  V  V  V  N  E  D  L  M  D  N  H  Q  S  E  L  A  E  E  L  A  E  R  K  H  L  Y  C  A  R  P  Q  T  L  Y  K  T  I  S  D  M  D  P  G  S  L  V  P  Y  Q  P  G  D  A  K  P  V  A  E  L  I  Y  R  Y  L  G  F  P  E  D  *  *  N  L  L  F  C  S  *  H  E  V  K  F  N  F  M  *  F  I  E  H  N  L  Y  P  *  I  F  C  Y  I  C  F  *  *  Y  L  V  C  L  R   </first_frame>
            <second_frame>  N  L  T  G  F  Q  S  L  N  C  R  P  P  S  S  L  L  T  R  R  L  S  S  L  H  R  K  R :   I  M  L  I  A  D  L  N  C  *  M  *  F  G  N  S  K  W  V  I  *  M  I  L  R  R  R  R  E  *  F  L  *  P  W  G  Q  L  L  L  M  L  L  *  E  R  W  I  P  R  K  *  R  K  N  C  S  R  K  V  T  L  I  F  L  F  K  W  G  E  D  C  I  S  P  Q  S :   R  L  L  K  M  V  L  Q  L  W  I  T  S  H  I  H  Q  A  *  L  T  I  *  S  Q  H  H  L  L  S  A  T  Q  :  V  Q  G  A  Y  L  R  H  Y  D  W  A  N  R  *  *  W  *  S  M  R  I  *  W  T  T  I  K  A  S  S  Q  K  N  W  L  R  E  N  I  C  I  V  L  V  H  K  H  Y  T  R  L  Y  R  I  W  I  Q  G  L  L  F  H  I  N  Q  V  T  R  N  Q  L  L  N  L  Y  I  D  I  *  V  S  Q  R  I  D  E  T  Y  C  S  V  V  D  M  K  *  S  S  I  L  C  D  L  *  S  I  I  F  I  H  K  Y  S  V  I  F  V  S  N  D  I  W  C  V  *  G  </second_frame>
            <third_frame>   I  L  P  V  F  S  L  S  I  A  G  H  R  A  L  F  S  L  V  V  S  V  R  S  T  G  K   : G  *  C  *  L  Q  I  *  I  V  E  C  N  L  E  I  L  N  G  *  Y  R  *  Y  C  E  G  E  E  S  S  F  C  D  R  G  D  N  F  F  *  C  S  C  K  S  G  G  Y  P  G  S  E  E  R  T  V  Q  E  R  L  H  *  Y  S  Y  S  N  G  A  R  I  V  Y  P  H  K   : V  D  C  *  K  W  F  S  S  S  G  L  L  H  I  F  I  K  H  S  *  L  F  E  V  S  I  T  C  Y  Q  P  R  R :   F  R  E  H  I  *  D  I  T  T  G  Q  T  V  N  S  G  S  Q  *  G  S  N  G  Q  P  S  K  R  A  R  R  R  T  G  *  E  K  T  F  V  L  C  S  S  T  N  I  I  Q  D  Y  I  G  Y  G  S  R  V  S  C  S  I  S  T  R  *  R  E  T  S  C  *  T  Y  I  *  I  F  R  F  P  R  G  L  M  K  L  I  V  L  *  L  T  *  S  E  V  Q  F  Y  V  I  Y  R  A  *  S  L  S  I  N  I  L  L  Y  L  F  L  M  I  F  G  V  F  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95047" stop="95226"/>
                    <exon start="96435" stop="96534"/>
                    <exon start="97441" stop="97697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDIDDIAKEKRVVFVTVGTTSFDALVRAVDTPEVKKELFKKGYTDILIQMGRGLYIPTKSTAENGSPALDYFTYSSSIADYLKSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCARPQTLYKTISDMDPGSLVPYQPGDAKPVAELIYRYLGFPED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94518" e_stop="94555"/>
            <exon e_start="95013" e_stop="95226"/>
            <exon e_start="96435" e_stop="96568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94518" e_stop="94555" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95013" e_stop="95226" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="96435" e_stop="96568" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94518" stop="94555"/>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95039" stop="95213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG : ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG : TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATA</gDNA_template>
            <first_frame> L  L  T  R  R  L  S  S  L  H  R  K  R :   F  E  L  L  N  V  I  W  K  F  *  M  G  D  I  D  D  I  A  K  E  K  R  V  V  F  V  T  V  G  T  T  S  F  D  A  L  V  R  A  V  D  T  P  E  V  K  K  E  L  F  K  K  G  Y  T  D  I  L  I  Q  M  G  R  G  L  Y  I  P  T  K  :  S  T  A  E  N  G  S  P  A  L  D  Y  F  T  Y  S  S  S  I  A  D  Y  L  K  S  A  S  L  V  I  S  H  A  G  N  S  W  L  T  M  F  L  A  L   </first_frame>
            <second_frame>  F  S  L  V  V  S  V  R  S  T  G  K   : D  L  N  C  *  M  *  F  G  N  S  K  W  V  I  *  M  I  L  R  R  R  R  E  *  F  L  *  P  W  G  Q  L  L  L  M  L  L  *  E  R  W  I  P  R  K  *  R  K  N  C  S  R  K  V  T  L  I  F  L  F  K  W  G  E  D  C  I  S  P  Q  S :   R  L  L  K  M  V  L  Q  L  W  I  T  S  H  I  H  Q  A  *  L  T  I  *  S  Q  H  H  L  L  S  A  T  Q  V  I  H  G  *  Q  C  S  *  L  Y  </second_frame>
            <third_frame>   S  H  S  S  S  Q  F  A  P  P  E  K  :  I  *  I  V  E  C  N  L  E  I  L  N  G  *  Y  R  *  Y  C  E  G  E  E  S  S  F  C  D  R  G  D  N  F  F  *  C  S  C  K  S  G  G  Y  P  G  S  E  E  R  T  V  Q  E  R  L  H  *  Y  S  Y  S  N  G  A  R  I  V  Y  P  H  K   : V  D  C  *  K  W  F  S  S  S  G  L  L  H  I  F  I  K  H  S  *  L  F  E  V  S  I  T  C  Y  Q  P  R  R  *  F  M  V  D  N  V  L  S  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95047" stop="95226"/>
                    <exon start="96435" stop="96566"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDIDDIAKEKRVVFVTVGTTSFDALVRAVDTPEVKKELFKKGYTDILIQMGRGLYIPTKSTAENGSPALDYFTYSSSIADYLKSASLVISHAGNSWLTMFLAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="99709" PGL_stop="101836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99709" e_stop="99934"/>
            <exon e_start="100196" e_stop="100409"/>
            <exon e_start="101112" e_stop="101312"/>
            <exon e_start="101454" e_stop="101565"/>
            <exon e_start="101717" e_stop="101836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99709" e_stop="99934" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99935" i_stop="100195" i_length="261"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100196" e_stop="100409" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="100410" i_stop="101111" i_length="702"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101112" e_stop="101312" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.963">
            <gDNA_intron_boundary i_start="101313" i_stop="101453" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101454" e_stop="101565" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="101566" i_stop="101716" i_length="151"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101717" e_stop="101836" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99709" stop="99934"/>
              <exon start="100196" stop="100409"/>
              <exon start="101112" stop="101312"/>
              <exon start="101454" stop="101565"/>
              <exon start="101717" stop="101770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99709" stop="99934"/>
              <exon start="100196" stop="100409"/>
              <exon start="101112" stop="101240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99710" stop="99934"/>
              <exon start="100196" stop="100409"/>
              <exon start="101112" stop="101294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100256" stop="100409"/>
              <exon start="101112" stop="101312"/>
              <exon start="101454" stop="101479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101196" stop="101312"/>
              <exon start="101454" stop="101565"/>
              <exon start="101717" stop="101836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAAACAATTCTATTTCAATAATAATAATAATAATAATACTAACAATACCAAAAAATAAACAACTTTCCATTATTTTTTCACTTTAATTCCCTACCTAGCTTTTGATTAATTTCAATTCTTCAAGTTACTTTTTCTTTATCACTTCATGTTATTCAAATACAAATTCATGAATTTAAGTTATATACGTTGACAGTTTAAATAAAGACGGACACTACGAGGTACAG : TGAATCGTTAACTGGTTTCGTTGGAATATTGTTACTTGAGAGGGAGGCAATGTTGCTTCATCTCTTCTTTTCATTGTTCGTGTTTTTTACTTTGATAGACAATGGGAATGCTGGTGTAACGAGTTCATTTGTTCGTAAAGAGTTTCCAGCTGTTGATATTCCTCTTGATAATGAAGTGTTTGCTGTTCCTAAAGGTTACAATGCTCCACAACAA : GTGCATATAACACAGGGTGATTATGAAGGAAAATCTGTAATAGTCTCATGGGTTACACCAGATAAACCGGGGTCTAGTGAAGTACGTTACGGATTATCTAAGGGAAAATATGATTTTACAGCTAAAGGATCATTCACAAACTACACATTTTACACCTACAAGTCTGGATATATACACAAGTGCTTTCTTAACGGACTTCAG : TATGACACAAAGTATTACTATGAAATCGGAAATGGTGACTCTGCTCGGAACTTTTGGTTTGAAACTCCTCCAAAGGTTGATCCAGATGCTTCATACACATTTGGTATCATAG : GTGATCTCGGACAAACATATAATTCTCTTTCGACTCTTCAGCATTACATGAGTAGTGGAGCTAAGAGTGTTTTGTTTGTGGGAGATCTATCTTACGCGGACAGATATAAGTATCATGATG</gDNA_template>
            <first_frame> I  K  Q  F  Y  F  N  N  N  N  N  N  N  T  N  N  T  K  K  *  T  T  F  H  Y  F  F  T  L  I  P  Y  L  A  F  D  *  F  Q  F  F  K  L  L  F  L  Y  H  F  M  L  F  K  Y  K  F  M  N  L  S  Y  I  R  *  Q  F  K  *  R  R  T  L  R  G  T   : V  N  R  *  L  V  S  L  E  Y  C  Y  L  R  G  R  Q  C  C  F  I  S  S  F  H  C  S  C  F  L  L  *  *  T  M  G  M  L  V  *  R  V  H  L  F  V  K  S  F  Q  L  L  I  F  L  L  I  M  K  C  L  L  F  L  K  V  T  M  L  H  N  K :   C  I  *  H  R  V  I  M  K  E  N  L  *  *  S  H  G  L  H  Q  I  N  R  G  L  V  K  Y  V  T  D  Y  L  R  E  N  M  I  L  Q  L  K  D  H  S  Q  T  T  H  F  T  P  T  S  L  D  I  Y  T  S  A  F  L  T  D  F  S :   M  T  Q  S  I  T  M  K  S  E  M  V  T  L  L  G  T  F  G  L  K  L  L  Q  R  L  I  Q  M  L  H  T  H  L  V  S  *  :  V  I  S  D  K  H  I  I  L  F  R  L  F  S  I  T  *  V  V  E  L  R  V  F  C  L  W  E  I  Y  L  T  R  T  D  I  S  I  M  M </first_frame>
            <second_frame>  L  N  N  S  I  S  I  I  I  I  I  I  I  L  T  I  P  K  N  K  Q  L  S  I  I  F  S  L  *  F  P  T  *  L  L  I  N  F  N  S  S  S  Y  F  F  F  I  T  S  C  Y  S  N  T  N  S  *  I  *  V  I  Y  V  D  S  L  N  K  D  G  H  Y  E  V  Q  :  *  I  V  N  W  F  R  W  N  I  V  T  *  E  G  G  N  V  A  S  S  L  L  F  I  V  R  V  F  Y  F  D  R  Q  W  E  C  W  C  N  E  F  I  C  S  *  R  V  S  S  C  *  Y  S  S  *  *  *  S  V  C  C  S  *  R  L  Q  C  S  T  T   : S  A  Y  N  T  G  *  L  *  R  K  I  C  N  S  L  M  G  Y  T  R  *  T  G  V  *  *  S  T  L  R  I  I  *  G  K  I  *  F  Y  S  *  R  I  I  H  K  L  H  I  L  H  L  Q  V  W  I  Y  T  Q  V  L  S  *  R  T  S   : V  *  H  K  V  L  L  *  N  R  K  W  *  L  C  S  E  L  L  V  *  N  S  S  K  G  *  S  R  C  F  I  H  I  W  Y  H  R :   *  S  R  T  N  I  *  F  S  F  D  S  S  A  L  H  E  *  W  S  *  E  C  F  V  C  G  R  S  I  L  R  G  Q  I  *  V  S  *   </second_frame>
            <third_frame>   *  T  I  L  F  Q  *  *  *  *  *  *  Y  *  Q  Y  Q  K  I  N  N  F  P  L  F  F  H  F  N  S  L  P  S  F  *  L  I  S  I  L  Q  V  T  F  S  L  S  L  H  V  I  Q  I  Q  I  H  E  F  K  L  Y  T  L  T  V  *  I  K  T  D  T  T  R  Y  S :   E  S  L  T  G  F  V  G  I  L  L  L  E  R  E  A  M  L  L  H  L  F  F  S  L  F  V  F  F  T  L  I  D  N  G  N  A  G  V  T  S  S  F  V  R  K  E  F  P  A  V  D  I  P  L  D  N  E  V  F  A  V  P  K  G  Y  N  A  P  Q  Q  :  V  H  I  T  Q  G  D  Y  E  G  K  S  V  I  V  S  W  V  T  P  D  K  P  G  S  S  E  V  R  Y  G  L  S  K  G  K  Y  D  F  T  A  K  G  S  F  T  N  Y  T  F  Y  T  Y  K  S  G  Y  I  H  K  C  F  L  N  G  L  Q  :  Y  D  T  K  Y  Y  Y  E  I  G  N  G  D  S  A  R  N  F  W  F  E  T  P  P  K  V  D  P  D  A  S  Y  T  F  G  I  I   : G  D  L  G  Q  T  Y  N  S  L  S  T  L  Q  H  Y  M  S  S  G  A  K  S  V  L  F  V  G  D  L  S  Y  A  D  R  Y  K  Y  H  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99909" stop="99934"/>
                    <exon start="100196" stop="100409"/>
                    <exon start="101112" stop="101312"/>
                    <exon start="101454" stop="101565"/>
                    <exon start="101717" stop="101835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKTDTTRYSESLTGFVGILLLEREAMLLHLFFSLFVFFTLIDNGNAGVTSSFVRKEFPAVDIPLDNEVFAVPKGYNAPQQVHITQGDYEGKSVIVSWVTPDKPGSSEVRYGLSKGKYDFTAKGSFTNYTFYTYKSGYIHKCFLNGLQYDTKYYYEIGNGDSARNFWFETPPKVDPDASYTFGIIGDLGQTYNSLSTLQHYMSSGAKSVLFVGDLSYADRYKYHD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="101858" PGL_stop="104294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101858" e_stop="101943"/>
            <exon e_start="102059" e_stop="102197"/>
            <exon e_start="102586" e_stop="102806"/>
            <exon e_start="103046" e_stop="103167"/>
            <exon e_start="103596" e_stop="103757"/>
            <exon e_start="103930" e_stop="104294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.501" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.660" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101858" e_stop="101943" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.501" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101944" i_stop="102058" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102059" e_stop="102197" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.959">
            <gDNA_intron_boundary i_start="102198" i_stop="102585" i_length="388"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102586" e_stop="102806" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.660">
            <gDNA_intron_boundary i_start="102807" i_stop="103045" i_length="239"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103046" e_stop="103167" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="103168" i_stop="103595" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103596" e_stop="103757" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.989">
            <gDNA_intron_boundary i_start="103758" i_stop="103929" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103930" e_stop="104294" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101858" stop="101943"/>
              <exon start="102059" stop="102197"/>
              <exon start="102586" stop="102806"/>
              <exon start="103046" stop="103128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102094" stop="102197"/>
              <exon start="102586" stop="102806"/>
              <exon start="103046" stop="103167"/>
              <exon start="103596" stop="103757"/>
              <exon start="103930" stop="104052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102094" stop="102197"/>
              <exon start="102586" stop="102772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102728" stop="102806"/>
              <exon start="103046" stop="103167"/>
              <exon start="103596" stop="103757"/>
              <exon start="103930" stop="104279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102798" stop="102806"/>
              <exon start="103046" stop="103167"/>
              <exon start="103596" stop="103757"/>
              <exon start="103930" stop="104292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103082" stop="103167"/>
              <exon start="103596" stop="103757"/>
              <exon start="103930" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103747" stop="103757"/>
              <exon start="103930" stop="104294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103971" stop="104294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGACGCTTTGTTGAGCCAAGCACAGCATATCAACCGTGGATTTGGAATACCGGGAATCATGAGATAGAATATATGCCATATATG : GGAGAAGTAACTATGTTCAAGTCGTATCTGTACAGATATCCGACCCCATATCAAGCTTCAAACAGCACTAGTCCGCTTTGGTATTCCATCAGGAGGGCGTCTGCTCACATAATTGTGCTATCAACCTACTCTCCTTTCG : TAAAATATACACCACAATGGAAGTGGCTGAGAGAGGAATTCAAAAATATTGACAGAGAGAAAACTCCTTGGCTTATAGTTCTTATGCATGTTCCTATCTACAACAGTAATGTAGCTCATTTCATGGAGGGAGAAAGTATGAGATCCGTCTTCGAAGCATGGTTTATCGAACACAAAGTTGATGTGATCTTTGCTGGTCATGTCCACGCCTACGAAAGATCA : TATCGCATATCAAATATACACTTTAACATCTCGAGTGGTGATCCCTATCCTGTACCTGATGAAACAGCTCCAGTTTACATAACTGTTGGTGATGGAGGAAATAAAGAAGGTCTTGCTGCAAG : ATTTAGAGATCCTCAACCAGATTACTCAGCTTTCCGCGAATCCAGTTATGGTCATTCTACACTAGAGATTAAGAACAGAACACATGCATTCTACCATTGGAACAGAAATGACGATGGAAAGAAAGTTAAAATCGACTCATTCGTGTTACACAATCTGTACTG : GGGACAGAATCATCACCAGAGAAAGTCGAAACAAAATCGTCTCCGTTCACTCATTTTAAACAGAGCTTCAACTGCACAACTGTGAGAACATATTTCTGCAACTTACTCTCAAATTAGCTGCAGTTTTATGGCCATAGATTTTAATATCTCAATGGGCAATGACAACTAATAAGTTTGAATATCTATTTGCTTTGTTGGACTATTTGGCTAATTATTTGAGCCGAGGGTCTATCAGAAAACGTCTGCGTACACACTACCCTCCCTAGACCCTTGTTGTGGGATTATACTGCGTATGTTATTGGACTATTTGGCTTATTTTCCACCAAATATTTATCATTCAAATAAGAGTTTGTGCTGTTTACTGC</gDNA_template>
            <first_frame> G  D  A  L  L  S  Q  A  Q  H  I  N  R  G  F  G  I  P  G  I  M  R  *  N  I  C  H  I  W :   E  K  *  L  C  S  S  R  I  C  T  D  I  R  P  H  I  K  L  Q  T  A  L  V  R  F  G  I  P  S  G  G  R  L  L  T  *  L  C  Y  Q  P  T  L  L  S  :  *  N  I  H  H  N  G  S  G  *  E  R  N  S  K  I  L  T  E  R  K  L  L  G  L  *  F  L  C  M  F  L  S  T  T  V  M  *  L  I  S  W  R  E  K  V  *  D  P  S  S  K  H  G  L  S  N  T  K  L  M  *  S  L  L  V  M  S  T  P  T  K  D  H :   I  A  Y  Q  I  Y  T  L  T  S  R  V  V  I  P  I  L  Y  L  M  K  Q  L  Q  F  T  *  L  L  V  M  E  E  I  K  K  V  L  L  Q   : D  L  E  I  L  N  Q  I  T  Q  L  S  A  N  P  V  M  V  I  L  H  *  R  L  R  T  E  H  M  H  S  T  I  G  T  E  M  T  M  E  R  K  L  K  S  T  H  S  C  Y  T  I  C  T   : G  D  R  I  I  T  R  E  S  R  N  K  I  V  S  V  H  S  F  *  T  E  L  Q  L  H  N  C  E  N  I  F  L  Q  L  T  L  K  L  A  A  V  L  W  P  *  I  L  I  S  Q  W  A  M  T  T  N  K  F  E  Y  L  F  A  L  L  D  Y  L  A  N  Y  L  S  R  G  S  I  R  K  R  L  R  T  H  Y  P  P  *  T  L  V  V  G  L  Y  C  V  C  Y  W  T  I  W  L  I  F  H  Q  I  F  I  I  Q  I  R  V  C  A  V  Y  C </first_frame>
            <second_frame>  G  T  L  C  *  A  K  H  S  I  S  T  V  D  L  E  Y  R  E  S  *  D  R  I  Y  A  I  Y   : G  R  S  N  Y  V  Q  V  V  S  V  Q  I  S  D  P  I  S  S  F  K  Q  H  *  S  A  L  V  F  H  Q  E  G  V  C  S  H  N  C  A  I  N  L  L  S  F  R :   K  I  Y  T  T  M  E  V  A  E  R  G  I  Q  K  Y  *  Q  R  E  N  S  L  A  Y  S  S  Y  A  C  S  Y  L  Q  Q  *  C  S  S  F  H  G  G  R  K  Y  E  I  R  L  R  S  M  V  Y  R  T  Q  S  *  C  D  L  C  W  S  C  P  R  L  R  K  I   : I  S  H  I  K  Y  T  L  *  H  L  E  W  *  S  L  S  C  T  *  *  N  S  S  S  L  H  N  C  W  *  W  R  K  *  R  R  S  C  C  K  :  I  *  R  S  S  T  R  L  L  S  F  P  R  I  Q  L  W  S  F  Y  T  R  D  *  E  Q  N  T  C  I  L  P  L  E  Q  K  *  R  W  K  E  S  *  N  R  L  I  R  V  T  Q  S  V  L  :  G  T  E  S  S  P  E  K  V  E  T  K  S  S  P  F  T  H  F  K  Q  S  F  N  C  T  T  V  R  T  Y  F  C  N  L  L  S  N  *  L  Q  F  Y  G  H  R  F  *  Y  L  N  G  Q  *  Q  L  I  S  L  N  I  Y  L  L  C  W  T  I  W  L  I  I  *  A  E  G  L  S  E  N  V  C  V  H  T  T  L  P  R  P  L  L  W  D  Y  T  A  Y  V  I  G  L  F  G  L  F  S  T  K  Y  L  S  F  K  *  E  F  V  L  F  T   </second_frame>
            <third_frame>   G  R  F  V  E  P  S  T  A  Y  Q  P  W  I  W  N  T  G  N  H  E  I  E  Y  M  P  Y  M  :  G  E  V  T  M  F  K  S  Y  L  Y  R  Y  P  T  P  Y  Q  A  S  N  S  T  S  P  L  W  Y  S  I  R  R  A  S  A  H  I  I  V  L  S  T  Y  S  P  F   : V  K  Y  T  P  Q  W  K  W  L  R  E  E  F  K  N  I  D  R  E  K  T  P  W  L  I  V  L  M  H  V  P  I  Y  N  S  N  V  A  H  F  M  E  G  E  S  M  R  S  V  F  E  A  W  F  I  E  H  K  V  D  V  I  F  A  G  H  V  H  A  Y  E  R  S  :  Y  R  I  S  N  I  H  F  N  I  S  S  G  D  P  Y  P  V  P  D  E  T  A  P  V  Y  I  T  V  G  D  G  G  N  K  E  G  L  A  A  R :   F  R  D  P  Q  P  D  Y  S  A  F  R  E  S  S  Y  G  H  S  T  L  E  I  K  N  R  T  H  A  F  Y  H  W  N  R  N  D  D  G  K  K  V  K  I  D  S  F  V  L  H  N  L  Y  W :   G  Q  N  H  H  Q  R  K  S  K  Q  N  R  L  R  S  L  I  L  N  R  A  S  T  A  Q  L  *  E  H  I  S  A  T  Y  S  Q  I  S  C  S  F  M  A  I  D  F  N  I  S  M  G  N  D  N  *  *  V  *  I  S  I  C  F  V  G  L  F  G  *  L  F  E  P  R  V  Y  Q  K  T  S  A  Y  T  L  P  S  L  D  P  C  C  G  I  I  L  R  M  L  L  D  Y  L  A  Y  F  P  P  N  I  Y  H  S  N  K  S  L  C  C  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101860" stop="101943"/>
                    <exon start="102059" stop="102197"/>
                    <exon start="102586" stop="102806"/>
                    <exon start="103046" stop="103167"/>
                    <exon start="103596" stop="103757"/>
                    <exon start="103930" stop="104014"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRFVEPSTAYQPWIWNTGNHEIEYMPYMGEVTMFKSYLYRYPTPYQASNSTSPLWYSIRRASAHIIVLSTYSPFVKYTPQWKWLREEFKNIDREKTPWLIVLMHVPIYNSNVAHFMEGESMRSVFEAWFIEHKVDVIFAGHVHAYERSYRISNIHFNISSGDPYPVPDETAPVYITVGDGGNKEGLAARFRDPQPDYSAFRESSYGHSTLEIKNRTHAFYHWNRNDDGKKVKIDSFVLHNLYWGQNHHQRKSKQNRLRSLILNRASTAQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="108952" PGL_stop="104903"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108952" e_stop="108883"/>
            <exon e_start="108232" e_stop="108153"/>
            <exon e_start="107521" e_stop="107371"/>
            <exon e_start="107289" e_stop="107059"/>
            <exon e_start="106625" e_stop="106332"/>
            <exon e_start="105790" e_stop="105677"/>
            <exon e_start="105242" e_stop="104903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.943"/>
          <exon-intron don_prob="0.726" acc_prob="0.998" e_score="0.887"/>
          <exon-intron don_prob="0.985" acc_prob="0.445" e_score="0.921"/>
          <exon-intron don_prob="0.504" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.497" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="108952" e_stop="108883" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108882" i_stop="108233" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="0.887">
            <gDNA_exon_boundary e_start="108232" e_stop="108153" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.726" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108152" i_stop="107522" i_length="631"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="107521" e_stop="107371" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.445">
            <gDNA_intron_boundary i_start="107370" i_stop="107290" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107289" e_stop="107059" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.504" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107058" i_stop="106626" i_length="433"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106625" e_stop="106332" e_length="294"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.497">
            <gDNA_intron_boundary i_start="106331" i_stop="105791" i_length="541"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105790" e_stop="105677" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105676" i_stop="105243" i_length="434"/>
          </intron>
          <exon e_serial="7" e_score="0.944">
            <gDNA_exon_boundary e_start="105242" e_stop="104903" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108952" stop="108883"/>
              <exon start="108232" stop="108153"/>
              <exon start="107521" stop="107371"/>
              <exon start="107289" stop="107059"/>
              <exon start="106625" stop="106583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108950" stop="108883"/>
              <exon start="108232" stop="108153"/>
              <exon start="107521" stop="107371"/>
              <exon start="107289" stop="107165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107435" stop="107371"/>
              <exon start="107289" stop="107059"/>
              <exon start="106625" stop="106332"/>
              <exon start="105790" stop="105677"/>
              <exon start="105242" stop="105205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106588" stop="106332"/>
              <exon start="105790" stop="105677"/>
              <exon start="105242" stop="105218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106359" stop="106332"/>
              <exon start="105790" stop="105677"/>
              <exon start="105242" stop="104903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426376" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGATTTTACGCTTAAAGTAATTGGTGGTGACATGACAGCAATTCCTGGCCTTTCTGATGCAATTGAG : GGAACCATCCGGGACGCTGTTGAAGACTCTATCACATGGCCAGTTCGAAAAGTTATTCCCATTTTACCTGGGGATTATAG : TGACCTTGAACTGAAGCCTACCGGAGTATTGGAGGTGAAACTTGTTCAAGCAAAGGAGTTAACAAATAAAGACATCATTGGAAAATCTGATCCTTTCGCTGTATTATATGTACGCCCTCTACGAGACAGAATGAAGAAGAGCAAAATAATT : AACAACGATTTGAACCCAATTTGGAATGAGCATTTTGAGTTTGTAGTCGAAGATCCATTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCAGCTGAACTAATTGGATGTGCCCATATATGTTTGAATGAGCTTGAGCCTGGTAAAGTGAAGGATATCTGGTTGAAGTTGGTGAAAGATTTGGAAATTCAGAGAGATCAGAAAAATAGGGGCCAG : GTGCACTTGGAGCTATTGTACTGCCCGAATGGCATGAACAATGGGCTAAGTAACCCTTTTTCTCAAAATGAGTCAATGACTTCATTAGAGAGAGTTCTTAAAAACTCAGCAGAAGGAAAAGAAGCTAGTCCAAACGGAAGTGAAATCAACAATAGAAGAGAGGTAATAGTACGAGGGGTACTTTCTGTTACTGTGGTATCAGCTGATGATCTGCCCCCAGCTGATATAGGGGGGAAGGCTGACCCCTACGTCGTTCTGATCATGAAGAAGGCTCAAATCAAGAACAAAACCAGG : GTTGTAAATGAAAGTCTAAACCCTGTATGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTTATGCTGGAAGTCTGGGACCATGACACATTCGGAAAG : GATTTCATGGGAAGATGCATACTGACTTTAACAAGGGTTCTAATGGAAGGTGAATACAAAGACTCGTACGAATTAGCTGAGGCTAAATCAGGGAAACTGAACCTGCATCTCAAATGGAATCCACAGCCAATATACAGAGACCACTAATGATGAACATCAAACTTCAGGTTTACATTCTTGTTAGTTTGTACAGGGAGTAACATTTCTTTGATTCCCTAATAGACTGGGAACGACAACACGTATAATCGAATATTTCTGTACATGATTTATTATAAACAGAAGAGAGATATTGTAAAGCTGTGAAACTTTTGAACAGAAGCTGAAGTTGAAGCTGGACAAG</gDNA_template>
            <first_frame> A  G  F  Y  A  *  S  N  W  W  *  H  D  S  N  S  W  P  F  *  C  N  *   : G  N  H  P  G  R  C  *  R  L  Y  H  M  A  S  S  K  S  Y  S  H  F  T  W  G  L  *  :  *  P  *  T  E  A  Y  R  S  I  G  G  E  T  C  S  S  K  G  V  N  K  *  R  H  H  W  K  I  *  S  F  R  C  I  I  C  T  P  S  T  R  Q  N  E  E  E  Q  N  N   : *  Q  R  F  E  P  N  L  E  *  A  F  *  V  C  S  R  R  S  I  D  T  T  L  G  G  K  N  L  *  R  *  R  A  S  V  S  *  T  N  W  M  C  P  Y  M  F  E  *  A  *  A  W  *  S  E  G  Y  L  V  E  V  G  E  R  F  G  N  S  E  R  S  E  K  *  G  P   : G  A  L  G  A  I  V  L  P  E  W  H  E  Q  W  A  K  *  P  F  F  S  K  *  V  N  D  F  I  R  E  S  S  *  K  L  S  R  R  K  R  S  *  S  K  R  K  *  N  Q  Q  *  K  R  G  N  S  T  R  G  T  F  C  Y  C  G  I  S  *  *  S  A  P  S  *  Y  R  G  E  G  *  P  L  R  R  S  D  H  E  E  G  S  N  Q  E  Q  N  Q   : G  C  K  *  K  S  K  P  C  M  E  S  N  F  *  L  C  C  *  G  W  I  T  *  Y  A  Y  A  G  S  L  G  P  *  H  I  R  K   : G  F  H  G  K  M  H  T  D  F  N  K  G  S  N  G  R  *  I  Q  R  L  V  R  I  S  *  G  *  I  R  E  T  E  P  A  S  Q  M  E  S  T  A  N  I  Q  R  P  L  M  M  N  I  K  L  Q  V  Y  I  L  V  S  L  Y  R  E  *  H  F  F  D  S  L  I  D  W  E  R  Q  H  V  *  S  N  I  S  V  H  D  L  L  *  T  E  E  R  Y  C  K  A  V  K  L  L  N  R  S  *  S  *  S  W  T   </first_frame>
            <second_frame>  L  D  F  T  L  K  V  I  G  G  D  M  T  A  I  P  G  L  S  D  A  I  E  :  G  T  I  R  D  A  V  E  D  S  I  T  W  P  V  R  K  V  I  P  I  L  P  G  D  Y  S :   D  L  E  L  K  P  T  G  V  L  E  V  K  L  V  Q  A  K  E  L  T  N  K  D  I  I  G  K  S  D  P  F  A  V  L  Y  V  R  P  L  R  D  R  M  K  K  S  K  I  I  :  N  N  D  L  N  P  I  W  N  E  H  F  E  F  V  V  E  D  P  L  T  Q  H  L  V  V  K  I  Y  D  D  E  G  L  Q  S  A  E  L  I  G  C  A  H  I  C  L  N  E  L  E  P  G  K  V  K  D  I  W  L  K  L  V  K  D  L  E  I  Q  R  D  Q  K  N  R  G  Q  :  V  H  L  E  L  L  Y  C  P  N  G  M  N  N  G  L  S  N  P  F  S  Q  N  E  S  M  T  S  L  E  R  V  L  K  N  S  A  E  G  K  E  A  S  P  N  G  S  E  I  N  N  R  R  E  V  I  V  R  G  V  L  S  V  T  V  V  S  A  D  D  L  P  P  A  D  I  G  G  K  A  D  P  Y  V  V  L  I  M  K  K  A  Q  I  K  N  K  T  R  :  V  V  N  E  S  L  N  P  V  W  N  Q  T  F  D  F  V  V  E  D  G  L  H  D  M  L  M  L  E  V  W  D  H  D  T  F  G  K  :  D  F  M  G  R  C  I  L  T  L  T  R  V  L  M  E  G  E  Y  K  D  S  Y  E  L  A  E  A  K  S  G  K  L  N  L  H  L  K  W  N  P  Q  P  I  Y  R  D  H  *  *  *  T  S  N  F  R  F  T  F  L  L  V  C  T  G  S  N  I  S  L  I  P  *  *  T  G  N  D  N  T  Y  N  R  I  F  L  Y  M  I  Y  Y  K  Q  K  R  D  I  V  K  L  *  N  F  *  T  E  A  E  V  E  A  G  Q  </second_frame>
            <third_frame>   W  I  L  R  L  K  *  L  V  V  T  *  Q  Q  F  L  A  F  L  M  Q  L  R :   E  P  S  G  T  L  L  K  T  L  S  H  G  Q  F  E  K  L  F  P  F  Y  L  G  I  I   : V  T  L  N  *  S  L  P  E  Y  W  R  *  N  L  F  K  Q  R  S  *  Q  I  K  T  S  L  E  N  L  I  L  S  L  Y  Y  M  Y  A  L  Y  E  T  E  *  R  R  A  K  *  L :   T  T  I  *  T  Q  F  G  M  S  I  L  S  L  *  S  K  I  H  *  H  N  T  W  W  *  K  S  M  T  M  K  G  F  S  Q  L  N  *  L  D  V  P  I  Y  V  *  M  S  L  S  L  V  K  *  R  I  S  G  *  S  W  *  K  I  W  K  F  R  E  I  R  K  I  G  A  R :   C  T  W  S  Y  C  T  A  R  M  A  *  T  M  G  *  V  T  L  F  L  K  M  S  Q  *  L  H  *  R  E  F  L  K  T  Q  Q  K  E  K  K  L  V  Q  T  E  V  K  S  T  I  E  E  R  *  *  Y  E  G  Y  F  L  L  L  W  Y  Q  L  M  I  C  P  Q  L  I  *  G  G  R  L  T  P  T  S  F  *  S  *  R  R  L  K  S  R  T  K  P  G :   L  *  M  K  V  *  T  L  Y  G  I  K  L  L  T  L  L  L  R  M  D  Y  M  I  C  L  C  W  K  S  G  T  M  T  H  S  E  R :   I  S  W  E  D  A  Y  *  L  *  Q  G  F  *  W  K  V  N  T  K  T  R  T  N  *  L  R  L  N  Q  G  N  *  T  C  I  S  N  G  I  H  S  Q  Y  T  E  T  T  N  D  E  H  Q  T  S  G  L  H  S  C  *  F  V  Q  G  V  T  F  L  *  F  P  N  R  L  G  T  T  T  R  I  I  E  Y  F  C  T  *  F  I  I  N  R  R  E  I  L  *  S  C  E  T  F  E  Q  K  L  K  L  K  L  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108951" stop="108883"/>
                    <exon start="108232" stop="108153"/>
                    <exon start="107521" stop="107371"/>
                    <exon start="107289" stop="107059"/>
                    <exon start="106625" stop="106332"/>
                    <exon start="105790" stop="105677"/>
                    <exon start="105242" stop="105096"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDFTLKVIGGDMTAIPGLSDAIEGTIRDAVEDSITWPVRKVIPILPGDYSDLELKPTGVLEVKLVQAKELTNKDIIGKSDPFAVLYVRPLRDRMKKSKIINNDLNPIWNEHFEFVVEDPLTQHLVVKIYDDEGLQSAELIGCAHICLNELEPGKVKDIWLKLVKDLEIQRDQKNRGQVHLELLYCPNGMNNGLSNPFSQNESMTSLERVLKNSAEGKEASPNGSEINNRREVIVRGVLSVTVVSADDLPPADIGGKADPYVVLIMKKAQIKNKTRVVNESLNPVWNQTFDFVVEDGLHDMLMLEVWDHDTFGKDFMGRCILTLTRVLMEGEYKDSYELAEAKSGKLNLHLKWNPQPIYRDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="112563" PGL_stop="109401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112563" e_stop="112266"/>
            <exon e_start="112168" e_stop="112064"/>
            <exon e_start="111347" e_stop="111297"/>
            <exon e_start="111148" e_stop="111028"/>
            <exon e_start="110235" e_stop="110114"/>
            <exon e_start="109451" e_stop="109401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.878" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.994" e_score="0.984"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="112563" e_stop="112266" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112265" i_stop="112169" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112168" e_stop="112064" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.981">
            <gDNA_intron_boundary i_start="112063" i_stop="111348" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111347" e_stop="111297" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="111296" i_stop="111149" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111148" e_stop="111028" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.872" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111027" i_stop="110236" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="110235" e_stop="110114" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.714" acc_prob="0.994">
            <gDNA_intron_boundary i_start="110113" i_stop="109452" i_length="662"/>
          </intron>
          <exon e_serial="6" e_score="0.961">
            <gDNA_exon_boundary e_start="109451" e_stop="109401" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112563" stop="112266"/>
              <exon start="112168" stop="112064"/>
              <exon start="111347" stop="111297"/>
              <exon start="111148" stop="111065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112561" stop="112266"/>
              <exon start="112168" stop="112064"/>
              <exon start="111347" stop="111297"/>
              <exon start="111148" stop="111028"/>
              <exon start="110235" stop="110114"/>
              <exon start="109451" stop="109401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112528" stop="112266"/>
              <exon start="112168" stop="112064"/>
              <exon start="111347" stop="111297"/>
              <exon start="111148" stop="111028"/>
              <exon start="110235" stop="110188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112528" stop="112266"/>
              <exon start="112168" stop="112064"/>
              <exon start="111347" stop="111299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTTTAGTGAATCTCAAGATGTAAGTTTTTTCAAGAATTCATCTTTTAGGAAAACCCCATAAGAAGAAAACTCCAAAAACAGATTCAAAATCTCACCTTTTTTTTAGATCTTTTCGAATTTTTTCAGTTTATTAGCTTATAGAAATCATTGAACAAGGAAGAGGGGATTTAAGAAAAAGTGGGATAAAAATGTCATTTGTTTTAGGGGTTGTGTTTGGAATAGCATTTGGACTTGCTATAATAGTTGCTTTTGTGAAATCTGAAAATGCTAGATCCAAACAGCGTACTGATCTG : GCTAGTGGAATTGCTGCATTTGCTAGAATGACAGTGGAAGATTCAAGAAAAATCTTTACACCAGAACAATACCCTTCTTGGGTTGTTTTCTCAAATCAGCAAAAG : TTGGCATGGCTTAATTCTCATCTTGAAAAGATCTGGCCGTATGTGGATGAG : GCAGCATCAGAACTAGTGAAGTCAAGTGTTGAGCCAATTTTGGAACAATATAGGCCTGTGATTTTGGCGTCTTTGAAATTTTCCAAGTTCACTCTTGGTACAGTTGCTCCACAATTTACAG : GGATTTCTATTATTGAAGATGGAAATGAGGGTATTACTATGGAATTAGAGATGCAATGGGATGGGAATCCAAGCATAATACTCGATATCATGACTTATGTTGGTGTAGCATTACCAGTGCAG : GTGAAAAACATCGCGTTTACTGGTATTTTCAGGCTCATCTTCAGGCCACTT</gDNA_template>
            <first_frame> L  S  F  S  E  S  Q  D  V  S  F  F  K  N  S  S  F  R  K  T  P  *  E  E  N  S  K  N  R  F  K  I  S  P  F  F  *  I  F  S  N  F  F  S  L  L  A  Y  R  N  H  *  T  R  K  R  G  F  K  K  K  W  D  K  N  V  I  C  F  R  G  C  V  W  N  S  I  W  T  C  Y  N  S  C  F  C  E  I  *  K  C  *  I  Q  T  A  Y  *  S   : G  *  W  N  C  C  I  C  *  N  D  S  G  R  F  K  K  N  L  Y  T  R  T  I  P  F  L  G  C  F  L  K  S  A  K   : V  G  M  A  *  F  S  S  *  K  D  L  A  V  C  G  *   : G  S  I  R  T  S  E  V  K  C  *  A  N  F  G  T  I  *  A  C  D  F  G  V  F  E  I  F  Q  V  H  S  W  Y  S  C  S  T  I  Y  R :   D  F  Y  Y  *  R  W  K  *  G  Y  Y  Y  G  I  R  D  A  M  G  W  E  S  K  H  N  T  R  Y  H  D  L  C  W  C  S  I  T  S  A   : G  E  K  H  R  V  Y  W  Y  F  Q  A  H  L  Q  A  T  </first_frame>
            <second_frame>  *  V  L  V  N  L  K  M  *  V  F  S  R  I  H  L  L  G  K  P  H  K  K  K  T  P  K  T  D  S  K  S  H  L  F  F  R  S  F  R  I  F  S  V  Y  *  L  I  E  I  I  E  Q  G  R  G  D  L  R  K  S  G  I  K  M  S  F  V  L  G  V  V  F  G  I  A  F  G  L  A  I  I  V  A  F  V  K  S  E  N  A  R  S  K  Q  R  T  D  L  :  A  S  G  I  A  A  F  A  R  M  T  V  E  D  S  R  K  I  F  T  P  E  Q  Y  P  S  W  V  V  F  S  N  Q  Q  K  :  L  A  W  L  N  S  H  L  E  K  I  W  P  Y  V  D  E  :  A  A  S  E  L  V  K  S  S  V  E  P  I  L  E  Q  Y  R  P  V  I  L  A  S  L  K  F  S  K  F  T  L  G  T  V  A  P  Q  F  T   : G  I  S  I  I  E  D  G  N  E  G  I  T  M  E  L  E  M  Q  W  D  G  N  P  S  I  I  L  D  I  M  T  Y  V  G  V  A  L  P  V  Q  :  V  K  N  I  A  F  T  G  I  F  R  L  I  F  R  P  L </second_frame>
            <third_frame>   K  F  *  *  I  S  R  C  K  F  F  Q  E  F  I  F  *  E  N  P  I  R  R  K  L  Q  K  Q  I  Q  N  L  T  F  F  L  D  L  F  E  F  F  Q  F  I  S  L  *  K  S  L  N  K  E  E  G  I  *  E  K  V  G  *  K  C  H  L  F  *  G  L  C  L  E  *  H  L  D  L  L  *  *  L  L  L  *  N  L  K  M  L  D  P  N  S  V  L  I  W :   L  V  E  L  L  H  L  L  E  *  Q  W  K  I  Q  E  K  S  L  H  Q  N  N  T  L  L  G  L  F  S  Q  I  S  K  S :   W  H  G  L  I  L  I  L  K  R  S  G  R  M  W  M  R :   Q  H  Q  N  *  *  S  Q  V  L  S  Q  F  W  N  N  I  G  L  *  F  W  R  L  *  N  F  P  S  S  L  L  V  Q  L  L  H  N  L  Q  :  G  F  L  L  L  K  M  E  M  R  V  L  L  W  N  *  R  C  N  G  M  G  I  Q  A  *  Y  S  I  S  *  L  M  L  V  *  H  Y  Q  C  R :   *  K  T  S  R  L  L  V  F  S  G  S  S  S  G  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112424" stop="112266"/>
                    <exon start="112168" stop="112064"/>
                    <exon start="111347" stop="111297"/>
                    <exon start="111148" stop="111028"/>
                    <exon start="110235" stop="110114"/>
                    <exon start="109451" stop="109401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEIIEQGRGDLRKSGIKMSFVLGVVFGIAFGLAIIVAFVKSENARSKQRTDLASGIAAFARMTVEDSRKIFTPEQYPSWVVFSNQQKLAWLNSHLEKIWPYVDEAASELVKSSVEPILEQYRPVILASLKFSKFTLGTVAPQFTGISIIEDGNEGITMELEMQWDGNPSIILDIMTYVGVALPVQVKNIAFTGIFRLIFRPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="120677" PGL_stop="119913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120677" e_stop="119913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="120677" e_stop="119913" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120677" stop="119913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120677" stop="120310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120502" stop="120305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACACATTTCCAGCTTGGCTCGGAATTCTTCAAGAGCTGCAGGTCCTTATATTAAAGTCGAACAAGTTCCATGGACCTATAAGTATGTGTCAGACTGAGTTTTGCTTTCCCAAGTTGCGAATTTTTGATCTTTCTCGTAATGATTTCAGTGGCTCACTTCCTGCAAAAGTTTTTGGAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACAGAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTAATCAAAGGGCAGGATTTTGAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTCTCAAGCAACCATTTTGAAGGTGTCATTCCGAAAACACTAAAGGATCTCAGGTCACTTTGGCTACTCAATTTATCTCATAACAATCTCATAGGTCATATTCCAATGGAATTGGGGCAATTGAATATGCTTGAAGCTTTAGATCTCTCTTGGAATCGGCTGACTGGAAAGATTCCACAGGAATTGACAAGACTGAACTTTCTGGCCATCTTAAACCTCTCTCAAAATCATCTCATGGGACCAATTCCTCAAGGTCGACAGTTCAACACATTTGAAAATGACTCATATGGTGGCAACCTTGATTTATGCGGTGTTCCTTTAACTAACAAATGTGGAACGAGTGATTCATCGCATGTTCCTCAACCAGAAGATAAAGACGAGTCATATTTTTTCAGTGGATTTACTTGGGAATCAGTA</gDNA_template>
            <first_frame> D  T  F  P  A  W  L  G  I  L  Q  E  L  Q  V  L  I  L  K  S  N  K  F  H  G  P  I  S  M  C  Q  T  E  F  C  F  P  K  L  R  I  F  D  L  S  R  N  D  F  S  G  S  L  P  A  K  V  F  G  N  F  K  A  M  I  K  L  D  G  E  D  R  G  N  I  K  Y  M  T  S  L  L  N  S  P  F  V  T  S  Y  E  N  S  V  S  L  V  I  K  G  Q  D  F  E  L  Q  R  I  S  T  I  T  T  T  I  D  L  S  S  N  H  F  E  G  V  I  P  K  T  L  K  D  L  R  S  L  W  L  L  N  L  S  H  N  N  L  I  G  H  I  P  M  E  L  G  Q  L  N  M  L  E  A  L  D  L  S  W  N  R  L  T  G  K  I  P  Q  E  L  T  R  L  N  F  L  A  I  L  N  L  S  Q  N  H  L  M  G  P  I  P  Q  G  R  Q  F  N  T  F  E  N  D  S  Y  G  G  N  L  D  L  C  G  V  P  L  T  N  K  C  G  T  S  D  S  S  H  V  P  Q  P  E  D  K  D  E  S  Y  F  F  S  G  F  T  W  E  S  V </first_frame>
            <second_frame>  T  H  F  Q  L  G  S  E  F  F  K  S  C  R  S  L  Y  *  S  R  T  S  S  M  D  L  *  V  C  V  R  L  S  F  A  F  P  S  C  E  F  L  I  F  L  V  M  I  S  V  A  H  F  L  Q  K  F  L  E  T  S  R  Q  *  S  N  *  M  V  K  T  E  E  I  S  S  T  *  H  L  C  *  I  R  H  L  S  H  R  M  R  I  Q  *  V  W  *  S  K  G  R  I  L  S  Y  K  E  S  A  Q  L  R  Q  P  *  I  S  Q  A  T  I  L  K  V  S  F  R  K  H  *  R  I  S  G  H  F  G  Y  S  I  Y  L  I  T  I  S  *  V  I  F  Q  W  N  W  G  N  *  I  C  L  K  L  *  I  S  L  G  I  G  *  L  E  R  F  H  R  N  *  Q  D  *  T  F  W  P  S  *  T  S  L  K  I  I  S  W  D  Q  F  L  K  V  D  S  S  T  H  L  K  M  T  H  M  V  A  T  L  I  Y  A  V  F  L  *  L  T  N  V  E  R  V  I  H  R  M  F  L  N  Q  K  I  K  T  S  H  I  F  S  V  D  L  L  G  N  Q   </second_frame>
            <third_frame>   H  I  S  S  L  A  R  N  S  S  R  A  A  G  P  Y  I  K  V  E  Q  V  P  W  T  Y  K  Y  V  S  D  *  V  L  L  S  Q  V  A  N  F  *  S  F  S  *  *  F  Q  W  L  T  S  C  K  S  F  W  K  L  Q  G  N  D  Q  I  R  W  *  R  Q  R  K  Y  Q  V  H  D  I  S  V  E  F  A  I  C  H  I  V  *  E  F  S  E  F  G  N  Q  R  A  G  F  *  A  T  K  N  Q  H  N  Y  D  N  H  R  S  L  K  Q  P  F  *  R  C  H  S  E  N  T  K  G  S  Q  V  T  L  A  T  Q  F  I  S  *  Q  S  H  R  S  Y  S  N  G  I  G  A  I  E  Y  A  *  S  F  R  S  L  L  E  S  A  D  W  K  D  S  T  G  I  D  K  T  E  L  S  G  H  L  K  P  L  S  K  S  S  H  G  T  N  S  S  R  S  T  V  Q  H  I  *  K  *  L  I  W  W  Q  P  *  F  M  R  C  S  F  N  *  Q  M  W  N  E  *  F  I  A  C  S  S  T  R  R  *  R  R  V  I  F  F  Q  W  I  Y  L  G  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120677" stop="119913"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTFPAWLGILQELQVLILKSNKFHGPISMCQTEFCFPKLRIFDLSRNDFSGSLPAKVFGNFKAMIKLDGEDRGNIKYMTSLLNSPFVTSYENSVSLVIKGQDFELQRISTITTTIDLSSNHFEGVIPKTLKDLRSLWLLNLSHNNLIGHIPMELGQLNMLEALDLSWNRLTGKIPQELTRLNFLAILNLSQNHLMGPIPQGRQFNTFENDSYGGNLDLCGVPLTNKCGTSDSSHVPQPEDKDESYFFSGFTWESV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="124069" PGL_stop="124876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124069" e_stop="124876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="124069" e_stop="124876" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124069" stop="124876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACACGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAATCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  H  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  I  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  T  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  S  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  N  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124071" stop="124874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSNPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="142964" PGL_stop="129218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142964" e_stop="142717"/>
            <exon e_start="130631" e_stop="130627"/>
            <exon e_start="129350" e_stop="129218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.923"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="142964" e_stop="142717" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="142716" i_stop="130632" i_length="12085"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="130631" e_stop="130627" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130626" i_stop="129351" i_length="1276"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="129350" e_stop="129218" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142964" stop="142717"/>
              <exon start="130631" stop="130627"/>
              <exon start="129350" stop="129218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241550" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCATTTGTTTGACTTGAATTAGTCTTTTTTTTTCTGTCACAAATGGCAGATAAATTAAGTATTTAAAATACTAACAGTAAAGAACAAATCTTTACACAAACTGTTTCTGGTTTAACGATAAAGTTTTTATGTTCTTTTAATCGTTAATCGAATGAATTTTAAAAATTCAAGCAGAGTAGAAAACCATAAAGGTTTTAATCTCCAGAAACCTCAAATACAGAAACTGTTAAATTTCTTAAGATTGTT : AAAAA : ATATGTTATTCTTACAATAACTTGTATTTATGAAGTTAATGAACAGAAACAGAAACAAGATAAAGCAGAAAAAAATTTAAAATAGAAGAATTAATCCGAGTCCACAGAAAATACTGTGTGTCCTTAAGAAATT</gDNA_template>
            <first_frame> Q  H  L  F  D  L  N  *  S  F  F  F  C  H  K  W  Q  I  N  *  V  F  K  I  L  T  V  K  N  K  S  L  H  K  L  F  L  V  *  R  *  S  F  Y  V  L  L  I  V  N  R  M  N  F  K  N  S  S  R  V  E  N  H  K  G  F  N  L  Q  K  P  Q  I  Q  K  L  L  N  F  L  R  L  L :   K   : N  M  L  F  L  Q  *  L  V  F  M  K  L  M  N  R  N  R  N  K  I  K  Q  K  K  I  *  N  R  R  I  N  P  S  P  Q  K  I  L  C  V  L  K  K   </first_frame>
            <second_frame>  S  I  C  L  T  *  I  S  L  F  F  S  V  T  N  G  R  *  I  K  Y  L  K  Y  *  Q  *  R  T  N  L  Y  T  N  C  F  W  F  N  D  K  V  F  M  F  F  *  S  L  I  E  *  I  L  K  I  Q  A  E  *  K  T  I  K  V  L  I  S  R  N  L  K  Y  R  N  C  *  I  S  *  D  C   : *  K  :  I  C  Y  S  Y  N  N  L  Y  L  *  S  *  *  T  E  T  E  T  R  *  S  R  K  K  F  K  I  E  E  L  I  R  V  H  R  K  Y  C  V  S  L  R  N  </second_frame>
            <third_frame>   A  F  V  *  L  E  L  V  F  F  F  L  S  Q  M  A  D  K  L  S  I  *  N  T  N  S  K  E  Q  I  F  T  Q  T  V  S  G  L  T  I  K  F  L  C  S  F  N  R  *  S  N  E  F  *  K  F  K  Q  S  R  K  P  *  R  F  *  S  P  E  T  S  N  T  E  T  V  K  F  L  K  I  V  :  K  K :   Y  V  I  L  T  I  T  C  I  Y  E  V  N  E  Q  K  Q  K  Q  D  K  A  E  K  N  L  K  *  K  N  *  S  E  S  T  E  N  T  V  C  P  *  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="132471" e_stop="132085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="132471" e_stop="132085" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132471" stop="132085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGAAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTGACTGCGAAAATCTCTCTTTTTG</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  E  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  G  L  N  F  *  L  R  K  S  L  F  L </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  K  A  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  F  D  C  E  N  L  S  F   </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  *  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  R  A  E  F  L  T  A  K  I  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="140375" e_stop="139780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="140375" e_stop="139780" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140375" stop="139780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTTCAAGGCAATGATCAAATTAGATGGTGAAGACATAGGAAATATCAAGTACATGACATCTCTGTTGAATTCGCCATTTGTCACATCGTATGAGAATTCAGTGAGTTTGGTTATCAAAGGGCAGGATTTGTAGCTACAAAGAATCAGCACAATTACGACAACCATAGATCTTTCAAGCAACCATTTTGAAGGTGTCATTCCGGAAACACTAAAAGATCTCAGCTCGCTTTGGCTACTCAATTTATCTCATAACAATCTTATAGGTCATATTCCAATGGAATTGGGGCAATTGATTACACTTGAAGCTTTAGATCTCTCCTGGAATCGGCTCACTGGAAAGATTCCGCAGGAATTGACAAGAATGAACTTTCTGTCCGTATTAAACCTCTCTCAAAATCATCTCATTGGACCAATTCCTCAAGGTCTACAGTTCAACACATTTGGAAATGACTCGTACGGCGGCAACCTTGATTTATGTGGTCCTCCTTTATCAAAACAATGTGGAACGAGTGATCCATCGCATGCTCCTCAACCATTGGAGGAAGAAGAAAAAGATGAAAGTGAGTCATATTTTTTTAGTGGATTTACGTGG</gDNA_template>
            <first_frame> E  T  S  R  Q  *  S  N  *  M  V  K  T  *  E  I  S  S  T  *  H  L  C  *  I  R  H  L  S  H  R  M  R  I  Q  *  V  W  L  S  K  G  R  I  C  S  Y  K  E  S  A  Q  L  R  Q  P  *  I  F  Q  A  T  I  L  K  V  S  F  R  K  H  *  K  I  S  A  R  F  G  Y  S  I  Y  L  I  T  I  L  *  V  I  F  Q  W  N  W  G  N  *  L  H  L  K  L  *  I  S  P  G  I  G  S  L  E  R  F  R  R  N  *  Q  E  *  T  F  C  P  Y  *  T  S  L  K  I  I  S  L  D  Q  F  L  K  V  Y  S  S  T  H  L  E  M  T  R  T  A  A  T  L  I  Y  V  V  L  L  Y  Q  N  N  V  E  R  V  I  H  R  M  L  L  N  H  W  R  K  K  K  K  M  K  V  S  H  I  F  L  V  D  L  R   </first_frame>
            <second_frame>  K  L  Q  G  N  D  Q  I  R  W  *  R  H  R  K  Y  Q  V  H  D  I  S  V  E  F  A  I  C  H  I  V  *  E  F  S  E  F  G  Y  Q  R  A  G  F  V  A  T  K  N  Q  H  N  Y  D  N  H  R  S  F  K  Q  P  F  *  R  C  H  S  G  N  T  K  R  S  Q  L  A  L  A  T  Q  F  I  S  *  Q  S  Y  R  S  Y  S  N  G  I  G  A  I  D  Y  T  *  S  F  R  S  L  L  E  S  A  H  W  K  D  S  A  G  I  D  K  N  E  L  S  V  R  I  K  P  L  S  K  S  S  H  W  T  N  S  S  R  S  T  V  Q  H  I  W  K  *  L  V  R  R  Q  P  *  F  M  W  S  S  F  I  K  T  M  W  N  E  *  S  I  A  C  S  S  T  I  G  G  R  R  K  R  *  K  *  V  I  F  F  *  W  I  Y  V  </second_frame>
            <third_frame>   N  F  K  A  M  I  K  L  D  G  E  D  I  G  N  I  K  Y  M  T  S  L  L  N  S  P  F  V  T  S  Y  E  N  S  V  S  L  V  I  K  G  Q  D  L  *  L  Q  R  I  S  T  I  T  T  T  I  D  L  S  S  N  H  F  E  G  V  I  P  E  T  L  K  D  L  S  S  L  W  L  L  N  L  S  H  N  N  L  I  G  H  I  P  M  E  L  G  Q  L  I  T  L  E  A  L  D  L  S  W  N  R  L  T  G  K  I  P  Q  E  L  T  R  M  N  F  L  S  V  L  N  L  S  Q  N  H  L  I  G  P  I  P  Q  G  L  Q  F  N  T  F  G  N  D  S  Y  G  G  N  L  D  L  C  G  P  P  L  S  K  Q  C  G  T  S  D  P  S  H  A  P  Q  P  L  E  E  E  E  K  D  E  S  E  S  Y  F  F  S  G  F  T  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="25" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140238" stop="139780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRISTITTTIDLSSNHFEGVIPETLKDLSSLWLLNLSHNNLIGHIPMELGQLITLEALDLSWNRLTGKIPQELTRMNFLSVLNLSQNHLIGPIPQGLQFNTFGNDSYGGNLDLCGPPLSKQCGTSDPSHAPQPLEEEEKDESESYFFSGFTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="141427" e_stop="140739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="141427" e_stop="140739" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141427" stop="140739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGAGTAATTCCCTATCTGGCCCACTGCCTAGCAACACAAGCATGCTTCCAAAACTAATCCATCTAAATTTGTCATACAACTCACTGAATGGTACCATACCATCTTGGGTGTTTAGCCTACCTTTGCTATATTCAGTGTCCCTCCAACATAACCGATTCAGAGGACTAGCCGATGAAGTGATCAAAACAAACCCAACATTAAAAGAACTGCATTTAAGCAATAATCAACTCAGTGGTTCTTTTCCTCAATCACTTGCGAATCTCACAAACCTTGAAACCCTTGGAATTTCATCAAATAACATCACCGTTGATGAGGGAATGAATATCACCTTTCTTAGCCTATCATCTTTATTCTTATCATCTTGTCAACTGAAGCATTTTCCATACTTCTTGAGAAATGTAAACACACTTGTGTACTTGGATATTTCTAACAATAAGATTTCTGGTCAAATCCCTAACTGGTTTAGCGGCATGAGGTGGGACTCGTTGATTTTCTTAAACCTTTCTCATAATTCATTAACAGGCAACCTACCACAATTTCGTTACGATAACCTAGGGTATCTTGATCTGAAATTTAACTCCCTTCAGGGTCCACTACCTTCATCCATTTGTAACATGAGCAAACTTATGTTATTAGATTTATCACACAACTACTTAAGCAACTCAGTTCCACATTGCTTGGGAAGCA</gDNA_template>
            <first_frame> V  E  *  F  P  I  W  P  T  A  *  Q  H  K  H  A  S  K  T  N  P  S  K  F  V  I  Q  L  T  E  W  Y  H  T  I  L  G  V  *  P  T  F  A  I  F  S  V  P  P  T  *  P  I  Q  R  T  S  R  *  S  D  Q  N  K  P  N  I  K  R  T  A  F  K  Q  *  S  T  Q  W  F  F  S  S  I  T  C  E  S  H  K  P  *  N  P  W  N  F  I  K  *  H  H  R  *  *  G  N  E  Y  H  L  S  *  P  I  I  F  I  L  I  I  L  S  T  E  A  F  S  I  L  L  E  K  C  K  H  T  C  V  L  G  Y  F  *  Q  *  D  F  W  S  N  P  *  L  V  *  R  H  E  V  G  L  V  D  F  L  K  P  F  S  *  F  I  N  R  Q  P  T  T  I  S  L  R  *  P  R  V  S  *  S  E  I  *  L  P  S  G  S  T  T  F  I  H  L  *  H  E  Q  T  Y  V  I  R  F  I  T  Q  L  L  K  Q  L  S  S  T  L  L  G  K   </first_frame>
            <second_frame>  S  S  N  S  L  S  G  P  L  P  S  N  T  S  M  L  P  K  L  I  H  L  N  L  S  Y  N  S  L  N  G  T  I  P  S  W  V  F  S  L  P  L  L  Y  S  V  S  L  Q  H  N  R  F  R  G  L  A  D  E  V  I  K  T  N  P  T  L  K  E  L  H  L  S  N  N  Q  L  S  G  S  F  P  Q  S  L  A  N  L  T  N  L  E  T  L  G  I  S  S  N  N  I  T  V  D  E  G  M  N  I  T  F  L  S  L  S  S  L  F  L  S  S  C  Q  L  K  H  F  P  Y  F  L  R  N  V  N  T  L  V  Y  L  D  I  S  N  N  K  I  S  G  Q  I  P  N  W  F  S  G  M  R  W  D  S  L  I  F  L  N  L  S  H  N  S  L  T  G  N  L  P  Q  F  R  Y  D  N  L  G  Y  L  D  L  K  F  N  S  L  Q  G  P  L  P  S  S  I  C  N  M  S  K  L  M  L  L  D  L  S  H  N  Y  L  S  N  S  V  P  H  C  L  G  S  </second_frame>
            <third_frame>   R  V  I  P  Y  L  A  H  C  L  A  T  Q  A  C  F  Q  N  *  S  I  *  I  C  H  T  T  H  *  M  V  P  Y  H  L  G  C  L  A  Y  L  C  Y  I  Q  C  P  S  N  I  T  D  S  E  D  *  P  M  K  *  S  K  Q  T  Q  H  *  K  N  C  I  *  A  I  I  N  S  V  V  L  F  L  N  H  L  R  I  S  Q  T  L  K  P  L  E  F  H  Q  I  T  S  P  L  M  R  E  *  I  S  P  F  L  A  Y  H  L  Y  S  Y  H  L  V  N  *  S  I  F  H  T  S  *  E  M  *  T  H  L  C  T  W  I  F  L  T  I  R  F  L  V  K  S  L  T  G  L  A  A  *  G  G  T  R  *  F  S  *  T  F  L  I  I  H  *  Q  A  T  Y  H  N  F  V  T  I  T  *  G  I  L  I  *  N  L  T  P  F  R  V  H  Y  L  H  P  F  V  T  *  A  N  L  C  Y  *  I  Y  H  T  T  T  *  A  T  Q  F  H  I  A  W  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="25" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141426" stop="140740"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNSLSGPLPSNTSMLPKLIHLNLSYNSLNGTIPSWVFSLPLLYSVSLQHNRFRGLADEVIKTNPTLKELHLSNNQLSGSFPQSLANLTNLETLGISSNNITVDEGMNITFLSLSSLFLSSCQLKHFPYFLRNVNTLVYLDISNNKISGQIPNWFSGMRWDSLIFLNLSHNSLTGNLPQFRYDNLGYLDLKFNSLQGPLPSSICNMSKLMLLDLSHNYLSNSVPHCLGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="133143" PGL_stop="133855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133143" e_stop="133855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="133143" e_stop="133855" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133143" stop="133855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133143" stop="133601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAACACACATATAATTATGTTTCTATCAAACATATACAAACAACAGACAAAAAGTTGAAAAGATAAAAACAGAACCAGAAAACTTCACTAATAAGTCCACAAAATTAAACGAAGACAACTTGGCCCCTCTCAATTTTCCATTAAGTCCTTCGTCTCTGAGCTCTCTTCTTTGGCCTTCATCTTTTGTGAGGCGTGAGTCCATCAAAAAAATTCGACAAACCATTTTGGTTTACGATATTTAAACATGAGACTCCACATGACAGTTCCAACAACGAGTCCAAAACTGTAGCCTATGACTACTGATTCCCATGTAAATCCACTAAAAAAATATGACTCACTTTCGTCTTCTTCTTCCTCCAAAGGTTGAGGAAGATGCGATGAATCACTTGTTCCACATTGTTTTGATAAAGGAGGACCACATAAATCAAGGTTGCTGCCATACGAGTCATTTCCAAATGTGTTGAACTGTAGACCATGAGGAATTGGTCCGATGAGATGATTTTGAGAGAGGTTTAAGAAGGCCAGAAAGTTCATTCTTGTCAATTCCTGCGGAATCATTCCAGTGAGGCGATTCCAGGAGAGATCTAAAGCTTCAAGCGTATTCAATTGCCCTAATTCCATTGGAATATCACCTCTGATATTGTTATGGGATAAATTGAGTAGCCAAAGTGAGCTGAGATCCTTTAGTGTTTTCGGAATGACACCTTCAAA</gDNA_template>
            <first_frame> N  N  T  H  I  I  M  F  L  S  N  I  Y  K  Q  Q  T  K  S  *  K  D  K  N  R  T  R  K  L  H  *  *  V  H  K  I  K  R  R  Q  L  G  P  S  Q  F  S  I  K  S  F  V  S  E  L  S  S  L  A  F  I  F  C  E  A  *  V  H  Q  K  N  S  T  N  H  F  G  L  R  Y  L  N  M  R  L  H  M  T  V  P  T  T  S  P  K  L  *  P  M  T  T  D  S  H  V  N  P  L  K  K  Y  D  S  L  S  S  S  S  S  S  K  G  *  G  R  C  D  E  S  L  V  P  H  C  F  D  K  G  G  P  H  K  S  R  L  L  P  Y  E  S  F  P  N  V  L  N  C  R  P  *  G  I  G  P  M  R  *  F  *  E  R  F  K  K  A  R  K  F  I  L  V  N  S  C  G  I  I  P  V  R  R  F  Q  E  R  S  K  A  S  S  V  F  N  C  P  N  S  I  G  I  S  P  L  I  L  L  W  D  K  L  S  S  Q  S  E  L  R  S  F  S  V  F  G  M  T  P  S   </first_frame>
            <second_frame>  I  T  H  I  *  L  C  F  Y  Q  T  Y  T  N  N  R  Q  K  V  E  K  I  K  T  E  P  E  N  F  T  N  K  S  T  K  L  N  E  D  N  L  A  P  L  N  F  P  L  S  P  S  S  L  S  S  L  L  W  P  S  S  F  V  R  R  E  S  I  K  K  I  R  Q  T  I  L  V  Y  D  I  *  T  *  D  S  T  *  Q  F  Q  Q  R  V  Q  N  C  S  L  *  L  L  I  P  M  *  I  H  *  K  N  M  T  H  F  R  L  L  L  P  P  K  V  E  E  D  A  M  N  H  L  F  H  I  V  L  I  K  E  D  H  I  N  Q  G  C  C  H  T  S  H  F  Q  M  C  *  T  V  D  H  E  E  L  V  R  *  D  D  F  E  R  G  L  R  R  P  E  S  S  F  L  S  I  P  A  E  S  F  Q  *  G  D  S  R  R  D  L  K  L  Q  A  Y  S  I  A  L  I  P  L  E  Y  H  L  *  Y  C  Y  G  I  N  *  V  A  K  V  S  *  D  P  L  V  F  S  E  *  H  L  Q  </second_frame>
            <third_frame>   *  H  T  Y  N  Y  V  S  I  K  H  I  Q  T  T  D  K  K  L  K  R  *  K  Q  N  Q  K  T  S  L  I  S  P  Q  N  *  T  K  T  T  W  P  L  S  I  F  H  *  V  L  R  L  *  A  L  F  F  G  L  H  L  L  *  G  V  S  P  S  K  K  F  D  K  P  F  W  F  T  I  F  K  H  E  T  P  H  D  S  S  N  N  E  S  K  T  V  A  Y  D  Y  *  F  P  C  K  S  T  K  K  I  *  L  T  F  V  F  F  F  L  Q  R  L  R  K  M  R  *  I  T  C  S  T  L  F  *  *  R  R  T  T  *  I  K  V  A  A  I  R  V  I  S  K  C  V  E  L  *  T  M  R  N  W  S  D  E  M  I  L  R  E  V  *  E  G  Q  K  V  H  S  C  Q  F  L  R  N  H  S  S  E  A  I  P  G  E  I  *  S  F  K  R  I  Q  L  P  *  F  H  W  N  I  T  S  D  I  V  M  G  *  I  E  *  P  K  *  A  E  I  L  *  C  F  R  N  D  T  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133159" stop="133386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCFYQTYTNNRQKVEKIKTEPENFTNKSTKLNEDNLAPLNFPLSPSSLSSLLWPSSFVRRESIKKIRQTILVYDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133650" stop="133853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERFKKARKFILVNSCGIIPVRRFQERSKASSVFNCPNSIGISPLILLWDKLSSQSELRSFSVFGMTPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="142301" PGL_stop="143553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142326" e_stop="143553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="142326" e_stop="143553" e_length="1228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142326" stop="142936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142326" stop="142907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142326" stop="142844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142336" stop="142738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142357" stop="142952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142358" stop="143016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142457" stop="143169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142497" stop="143208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142498" stop="143138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142614" stop="143230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142614" stop="142808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142732" stop="143463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142732" stop="143176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142766" stop="143538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142946" stop="143553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  F  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  W  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  K  R  M  F  L  L  C  Q  M  K  L  W  L  M  N  D  Y  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  Y  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  Y  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  M  R  *  L  L  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  C  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  T  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  F  G  *  *  T  I  I  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  T  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  T  *  S  P  C  *  R  I  N  Y  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  *  D  D  C  * </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  V  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  P  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  L  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  *  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  K  E  N  V  P  V  M  S  D  E  T  L  A  D  E  R  L  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  M  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  N  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143075" stop="143551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMFFYLTMLSLQKFIKENVPVMSDETLADERLLVTEAWTHSDFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIMNDAFQVAAIIEKLPPLWKDFKNYLKHKRNEMTV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142555" stop="142752"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNFLRTHSSFCGLGLILVFYIIFCFILFLFLFLFINFINTSCCKNNNLKKFNSFCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="142312" e_stop="142502"/>
            <exon e_start="142930" e_stop="143553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.759" acc_prob="0.970" e_score="0.922"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="142312" e_stop="142502" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.759" acc_prob="0.970">
            <gDNA_intron_boundary i_start="142503" i_stop="142929" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="142930" e_stop="143553" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142312" stop="142502"/>
              <exon start="142930" stop="143426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142946" stop="143553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  L  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  *  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  K  E  N  V  P  V  M  S  D  E  T  L  A  D  E  R  L  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  M  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  N  E  M  T  V   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  W  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  K  R  M  F  L  L  C  Q  M  K  L  W  L  M  N  D  Y  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  Y  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  Y  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  M  R  *  L  L  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  F  G  *  *  T  I  I  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  T  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  T  *  S  P  C  *  R  I  N  Y  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  *  D  D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143075" stop="143551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMFFYLTMLSLQKFIKENVPVMSDETLADERLLVTEAWTHSDFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIMNDAFQVAAIIEKLPPLWKDFKNYLKHKRNEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="142301" e_stop="142409"/>
            <exon e_start="142893" e_stop="143553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="142301" e_stop="142409" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="142410" i_stop="142892" i_length="483"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="142893" e_stop="143553" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142301" stop="142409"/>
              <exon start="142893" stop="143088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396239" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142946" stop="143553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCATT : TATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  H   : L  F  *  I  L  N  L  S  A  I  C  D  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  L  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  *  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  K  E  N  V  P  V  M  S  D  E  T  L  A  D  E  R  L  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  M  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  N  E  M  T  V   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  C  I  :  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  W  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  K  R  M  F  L  L  C  Q  M  K  L  W  L  M  N  D  Y  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  Y  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  Y  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  M  R  *  L  L  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  A  F :   I  L  N  T  *  F  I  C  H  L  *  Q  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  F  G  *  *  T  I  I  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  T  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  T  *  S  P  C  *  R  I  N  Y  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  *  D  D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143075" stop="143551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMFFYLTMLSLQKFIKENVPVMSDETLADERLLVTEAWTHSDFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIMNDAFQVAAIIEKLPPLWKDFKNYLKHKRNEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="143677" PGL_stop="143061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143677" e_stop="143061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="143677" e_stop="143061" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143677" stop="143061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTCTTTAATTTTGTGGAATCTTCTTCCACAAAATTTACTCCAGATATTGCTGAATTATCACGTGACCTCTTTTCTGCAGCCTTATTATCCTCTTCGATTCTCAACCTTAGTATGAGATCTTCAACAGTCATCTCATTGCGTTTGTGTTTCAAGTAGTTTTTAAAGTCCTTCCACAATGGAGGTAACTTTTCAATAATTGCAGCCACTTGAAAAGCATCATTCATAATTAATCCTTCAGCAAGGAGATCATGTATTATGACCTGCAATTCTTGAACTTGGGTGACGACAGTCTTACTGTCTATCATCTTAAAGTCCAGAAATTTTGCCACAATGAATTTCTTCATTCCGGCATCTTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTTGCATTGTTGTACACATTGTACAGATCATCTTGTAGACCACTCAAAATATAATTTTTACACAAAAAATCTGAGTGTGTCCATGCTTCTGTTACCAATAATCGTTCATCAGCCAAAGTTTCATCTGACATAACAGGAACATTCTCTTTGATGAACTTCTGCAGACTCAACATAGTGAGATAGAAGAACATCTTTTGCTACCATCTCTTAA</gDNA_template>
            <first_frame> S  F  L  *  F  C  G  I  F  F  H  K  I  Y  S  R  Y  C  *  I  I  T  *  P  L  F  C  S  L  I  I  L  F  D  S  Q  P  *  Y  E  I  F  N  S  H  L  I  A  F  V  F  Q  V  V  F  K  V  L  P  Q  W  R  *  L  F  N  N  C  S  H  L  K  S  I  I  H  N  *  S  F  S  K  E  I  M  Y  Y  D  L  Q  F  L  N  L  G  D  D  S  L  T  V  Y  H  L  K  V  Q  K  F  C  H  N  E  F  L  H  S  G  I  F  C  F  V  L  L  F  *  S  I  P  E  F  F  *  G  F  C  I  V  V  H  I  V  Q  I  I  L  *  T  T  Q  N  I  I  F  T  Q  K  I  *  V  C  P  C  F  C  Y  Q  *  S  F  I  S  Q  S  F  I  *  H  N  R  N  I  L  F  D  E  L  L  Q  T  Q  H  S  E  I  E  E  H  L  L  L  P  S  L   </first_frame>
            <second_frame>  L  F  F  N  F  V  E  S  S  S  T  K  F  T  P  D  I  A  E  L  S  R  D  L  F  S  A  A  L  L  S  S  S  I  L  N  L  S  M  R  S  S  T  V  I  S  L  R  L  C  F  K  *  F  L  K  S  F  H  N  G  G  N  F  S  I  I  A  A  T  *  K  A  S  F  I  I  N  P  S  A  R  R  S  C  I  M  T  C  N  S  *  T  W  V  T  T  V  L  L  S  I  I  L  K  S  R  N  F  A  T  M  N  F  F  I  P  A  S  S  V  L  Y  F  F  S  K  A  S  Q  S  S  F  E  V  F  A  L  L  Y  T  L  Y  R  S  S  C  R  P  L  K  I  *  F  L  H  K  K  S  E  C  V  H  A  S  V  T  N  N  R  S  S  A  K  V  S  S  D  I  T  G  T  F  S  L  M  N  F  C  R  L  N  I  V  R  *  K  N  I  F  C  Y  H  L  L  </second_frame>
            <third_frame>   F  S  L  I  L  W  N  L  L  P  Q  N  L  L  Q  I  L  L  N  Y  H  V  T  S  F  L  Q  P  Y  Y  P  L  R  F  S  T  L  V  *  D  L  Q  Q  S  S  H  C  V  C  V  S  S  S  F  *  S  P  S  T  M  E  V  T  F  Q  *  L  Q  P  L  E  K  H  H  S  *  L  I  L  Q  Q  G  D  H  V  L  *  P  A  I  L  E  L  G  *  R  Q  S  Y  C  L  S  S  *  S  P  E  I  L  P  Q  *  I  S  S  F  R  H  L  L  F  C  T  S  F  L  K  H  P  R  V  L  L  R  F  L  H  C  C  T  H  C  T  D  H  L  V  D  H  S  K  Y  N  F  Y  T  K  N  L  S  V  S  M  L  L  L  P  I  I  V  H  Q  P  K  F  H  L  T  *  Q  E  H  S  L  *  *  T  S  A  D  S  T  *  *  D  R  R  T  S  F  A  T  I  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143339" stop="143139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFRHLLFCTSFLKHPRVLLRFLHCCTHCTDHLVDHSKYNFYTKNLSVSMLLLPIIVHQPKFHLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="147061" PGL_stop="147451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147061" e_stop="147451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="147061" e_stop="147451" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147061" stop="147286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147124" stop="147451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAGGAAGTCAATTTTTGATTTTTTAATAACTGAAAAAAAAAATTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAACAA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  R  K  S  I  F  D  F  L  I  T  E  K  K  N  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  T  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  G  S  Q  F  L  I  F  *  *  L  K  K  K  I  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  Q </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  E  V  N  F  *  F  F  N  N  *  K  K  K  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0093E12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 451 chains have been computed
$ 
$ memory statistics:
$ 1015704 bytes spliced alignments in total
$ 167 spliced alignments have been stored
$ 6082 bytes was the average size of a spliced alignment
$ 42424 bytes predicted gene locations in total
$ 29 predicted gene locations have been stored
$ 1462 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 501 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:34:18
-->
