<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:35:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8275-2" ref_strand="+" ref_description="SGN-M8275-2 C2_At4g16710-2 [cosii_markers]">
      <seq>aaatctaaccggttttcagtctctaaattgccgggcaccggagctggagctcttcaccgttcaatttctccatcaaatcaaacttgttaattgcagattcaaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacgacttcttttgatgctcttgtaagagcagtggatactccggaagttaagaatgaattgttcaagaagggttacaccgatattctgattcaaatggggcgaggatcgtacattcccacaagggctactgctgaaaatggttctccagctctggactacttcacattttcctcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccattaatagtggtagtcaatgaggatctaatggacaaccatcaaagtgagctcgcagaagaactggctgagagaaagcatttgtattgtgctcgtccacaaacgttatacaagactatctcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctaaacttatttatagatatttaggtttcccagaggaatgattaaacttattgttctgtagttgacatgaagtgaagctcaattgtatgtgatttatagatcataatctttatcctcaaaggttctgttatttgtttgtaaagatattttatggtttggggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94172" stop="98123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94472" g_stop="94555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.726"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="94995" i_length="440">
            <donor d_prob="1.000" d_score="0.59"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94996" g_stop="95226" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="310" r_length="231" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="410" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97822" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="789" r_length="379" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="813"/>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-M8275-2" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8275-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94472" e_stop="94555"/>
          <exon e_start="94996" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTACCGGTTTTCAGTCTCTCAATTGCCGGCCACC-GAGCTCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTTGTTTCTAATGATATTTGGTGTGTTTGAGGAA</genome_strand>
        <mrna_strand>AAATCTAACCGGTTTTCAGTCTCTAAATTGCCGGGCACCGGAGCT-GGAGCTC-TTCACCGT-TCAATT-TCTCCATC--AAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTTAATTGCAGATTCAAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACGACTTCTTTTGATGCTCTTGTAAGAGCAGTGGATACTCCGGAAGTTAAGAATGAATTGTTCAAGAAGGGTTACACCGATATTCTGATTCAAATGGGGCGAGGATCGTACATTCCCACAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTGCTGAAAATGGTTCTCCAGCTCTGGACTACTTCACATTTTCCTCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCATTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGTGAGCTCGCAGAAGAACTGGCTGAGAGAAAGCATTTGTATTGTGCTCGTCCACAAACGTTATACAAGACTATCTCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTAAACTTATTTATAGATATTTAGGTTTCCCAGAGGAATGATTAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGCTCAATTGTATGTGATTTATAGATCATAATCTTTATCCTCAAAGGTTCTG-T-TATTTGTTTGTAAAGATATTTTATG-GTTTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8275" ref_strand="+" ref_description="SGN-M8275 C2_At4g16710 [cosii_markers]">
      <seq>tctcttctcactcgtcgtctcagttcgctccaccggaaaagatttgaattgttgaatgtaatttggaaattctaaatgggtgatatagatgatattgcgaaggagaagagagtagtttttgtgaccgtggggacaacttcttttgatgctcttgtaagagcggtggataccccggaagtgaagaaagaactgttcaagaaaggttacactgatattcttattcaaatggggcgaggattgtatatccccacaaagtcgactgctgaaaatggttctccagctctggattacttcacatattcatcaagcatagctgactatttgaagtcagcatcacttgttatcagccacgcaggttcagggagcatatttgagacattacgactgggcaaaccgttaatagtggtagtcaatgaggatctaatggacaaccatcaaagcgagctcgcagaagaactggctgagagaaaacatttgtattgtgctcgtccacaaacattatacaagactatatcggatatggatccagggtctcttgttccatatcaaccaggtgacgcgaaaccagttgctgaacttatatatagatatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0093E12-2ba9C/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0093E12.2" temp_strand="+" temp_description="C12HBa0093E12.2  AC235549.2 htgs_phase:2 submitted_to_sgn_as:gi|238859684|gb|AC235549.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-93E12, WORKING DRAFT SEQUENCE, 7 ordered pieces">
        <position start="94215" stop="97980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94515" g_stop="94555" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95013" g_stop="95226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="255" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96435" g_stop="96534" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="355" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97441" g_stop="97680" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="595" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0093E12.2" gen_strand="+" ref_id="SGN-M8275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0093E12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94515" e_stop="94555"/>
          <exon e_start="95013" e_stop="95226"/>
          <exon e_start="96435" e_stop="96534"/>
          <exon e_start="97441" e_stop="97680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAGGTAACGTTCCTTCCGTTTTCTCTTTTTTTACAGTCTGCTTTTATCACATAAATGTCTATTGTATTTTTCATACTTAGCTGATTCTTTGATTATTTAGTTTAGGATTTTTTATCTATACGCACGTCTGATTTCATTCAAAAATGTGCAAATTATCGCCTTTGATTGTTATTTTAGCTTTTTCCTGGCTTCAAATAATGAACAATGCTTTGTTTTCTTCGTAATTTTCGTTTAAACTTGTGTTTTCTTATTCAATTGAGCTTTAGATGTCCTGCTATTGCATTTGACGGCTTGTTTTAGCTTTCTATTTTGGTTATTGCACGATTATTTGTTTTGAAGTTTGGATATTTTGATTACAGGGAACTCTGCTTAATTTTTTTCCGTTTGTCCATTTGAAATCCCCCTTCAATATTATTGTCTATTGCTTTGATTTGTAATGTTACGATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAGGTAATTTGGTATTTCTCTTGATATTTGTTTTTTCCTGTAAGCACATTTGGAGTAAAAATTTCAGCTTTTCAGTTTCTACTTTGATTGGAGATCCAACAAATGTCCCCTCAAGGAAAAAATAGAAGGATTAGGGTTATTGTGGTATGGATAGGATCGCCCAGCCCTTAACCAGAGGTTTAGGTCCTTAAGTGGCGGTAAAATGGATAAGTCGAGTTCCAGAGTGGCTATCGTGGGTGTTCGGGGAAGCGTGAAGCGGAAAAAAGCGATAAGGACCTGCTTCATGCTTTAAGCGATGAAGCGCTCACATACTCGAAGCGTAGAAGGCTCAATCGCTTCATTTTCCTGAACACTACGTGTGGAAACCAACAACAAAAATAAAATAAAAATGCAAACCTAGTTGAGTTGCCTATTTAAGTGAAATTTTGAGAAATGATACAGAATTGCTGATTTTCCAGTTTTTTTTGAAAAAAATTGCTGTTTTGTTTTTGGTTTTCTTGCTGCGAAGAAAGTATAGAGTTCTTTTCTTTGTATAACAGAAAAATCTCCAAGGGCCAGTGACGCACCATTTAACACTTGGATGATGGACCCATTCCTCTACCCTCTTCCTTGTGTATATCACCATTCGAAACTTGGTGGATGATTGACCCATTCCTCTACCCTTTTCCTCTCAAATACCAGGTGTCTGCAGCAAGATTCCAACCGGCAATGTTCGCCTAACTCACACATCACATGTTGCTTTCTTACCACTTGTAAGTAAGTCTGCTTAACAAAGTAAATTGAAAGTTTTGAAGAATTTATGTTCGCATATGCTTGGATAAGCTTTAGTCCGAGTAGTGACTAGACCTTAGCATGCTGAACTATTTGACAAGCCGAGATCCTACATGTGGTTACCAAGTCTCAGCTGTCCTGAAGAACAATAAAACGAGAGATTTGGAAAGTGTGACGTGGCATTACGTTTAGGTTCTTTTGGGTGCTCCCATCTCATTAAACTTATGGACCCTATTAGTTTTATGCTTTTTATGTTAGGTTTTGTCGCAATTTGGTATGGAATCTCTTTTAACCCTTCTATAGAAATGAACACTTGTACACGCTCACTCACTTACATATATCTACCTTTGCAAAATTTACTCGTCTCACTCGTCAACTCTTCTTTGCCCAGTAATAATTCATTTATTTCTGGTCTTTTATATCTTGCTTTATCTTTCCAGTCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAGGTAATTCATGGTTGACAATGTTCTTAGCTTTATACATTTAAGTGATTGTTCGATTGCTAGTTAGAGTTATGCATGTTTTAGAATTGTAGTGATTAATTATGCAATGTTTAGTTATTTCATTTTTATAACTTATAGCTGTTTTATTCATGTGGGGTTGTAATATAATAACGAAACTCCTTAGTCGGTAATTTTATACAAAACAACTAAAATGCTACCAAACATTGTATTAACTATGCTTATTTTAATACATGAATTACTCCTTTCCTAACCACAGCAACAAAACACGAGTTACTATATGGTGTGTACTTTCTTTTGTCTTTCTTTTTGGGGTCTCCTTAACTTTTCTAACTCTACTCTTCCTTCTACTCGGATTGGAGAAACTAGCCTTTTGGATATCATTGTTCCATTAAAATGTGTATATATTAGCCCTGCCTAGGGAAATTAACCCATAGATCTAGGTACTGGTTATATGGTGCCAAAACCCAAAGTTAGCTCTCTCACTGAGACACTTGAAACATTTTCATACTGTTCCAATGGTCACAATAACTGACACAGAATCGTTGGGAGAGGGGTGTTCAAGTATGTTGAAATATTCCTGTTTTCTTTAACACGTCTATCTCATGATGTGATTTAATGTCAACCTCTGCTTGCAAATGTTTTCGGCTGCTATTGCTTGTTGCCTCATAAACATATGATTGGCTGTAAAGTTCATGCCCTTCGTTTCTGAGCAGAAGCGGAACCAGAAGCTTATGGGTTCAAGATATTTGTTCTTTTGAGTTATGGAGTTCTAAAGTAATAATTTGTAAAACTTGTTGTGAATAGGAAAAACAACCGATATTTCTTCTCATTATAGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATACACATTTGAGTACTGCAGGTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAG</genome_strand>
        <mrna_strand>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="94472" PGL_stop="97822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94472" e_stop="94555"/>
            <exon e_start="94996" e_stop="95226"/>
            <exon e_start="96435" e_stop="96534"/>
            <exon e_start="97441" e_stop="97822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.726"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.918"/>
          <exon-intron don_prob="0.987" acc_prob="0.685" e_score="0.950"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.726">
            <gDNA_exon_boundary e_start="94472" e_stop="94555" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94556" i_stop="94995" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="94996" e_stop="95226" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="96435" e_stop="96534" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.685">
            <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="97441" e_stop="97822" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94472" stop="94555"/>
              <exon start="94996" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8275-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTACCGGTTTTCAGTCTCTCAATTGCCGGCCACCGAGCTCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG : GATAATGTTAATTGCAGATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG : TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG : GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAGGTTTCCCAGAGGATTGATGAAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTTTATGTGATTTATAGAGCATAATCTTTATCCATAAATATTCTGTTATATTTGTTTCTAATGATATTTGGTGTGTTTGAGGAA</gDNA_template>
            <first_frame> K  S  Y  R  F  S  V  S  Q  L  P  A  T  E  L  S  S  H  S  S  S  Q  F  A  P  P  E  K  :  D  N  V  N  C  R  F  E  L  L  N  V  I  W  K  F  *  M  G  D  I  D  D  I  A  K  E  K  R  V  V  F  V  T  V  G  T  T  S  F  D  A  L  V  R  A  V  D  T  P  E  V  K  K  E  L  F  K  K  G  Y  T  D  I  L  I  Q  M  G  R  G  L  Y  I  P  T  K  :  S  T  A  E  N  G  S  P  A  L  D  Y  F  T  Y  S  S  S  I  A  D  Y  L  K  S  A  S  L  V  I  S  H  A   : G  S  G  S  I  F  E  T  L  R  L  G  K  P  L  I  V  V  V  N  E  D  L  M  D  N  H  Q  S  E  L  A  E  E  L  A  E  R  K  H  L  Y  C  A  R  P  Q  T  L  Y  K  T  I  S  D  M  D  P  G  S  L  V  P  Y  Q  P  G  D  A  K  P  V  A  E  L  I  Y  R  Y  L  G  F  P  E  D  *  *  N  L  L  F  C  S  *  H  E  V  K  F  N  F  M  *  F  I  E  H  N  L  Y  P  *  I  F  C  Y  I  C  F  *  *  Y  L  V  C  L  R   </first_frame>
            <second_frame>  N  L  T  G  F  Q  S  L  N  C  R  P  P  S  S  L  L  T  R  R  L  S  S  L  H  R  K  R :   I  M  L  I  A  D  L  N  C  *  M  *  F  G  N  S  K  W  V  I  *  M  I  L  R  R  R  R  E  *  F  L  *  P  W  G  Q  L  L  L  M  L  L  *  E  R  W  I  P  R  K  *  R  K  N  C  S  R  K  V  T  L  I  F  L  F  K  W  G  E  D  C  I  S  P  Q  S :   R  L  L  K  M  V  L  Q  L  W  I  T  S  H  I  H  Q  A  *  L  T  I  *  S  Q  H  H  L  L  S  A  T  Q  :  V  Q  G  A  Y  L  R  H  Y  D  W  A  N  R  *  *  W  *  S  M  R  I  *  W  T  T  I  K  A  S  S  Q  K  N  W  L  R  E  N  I  C  I  V  L  V  H  K  H  Y  T  R  L  Y  R  I  W  I  Q  G  L  L  F  H  I  N  Q  V  T  R  N  Q  L  L  N  L  Y  I  D  I  *  V  S  Q  R  I  D  E  T  Y  C  S  V  V  D  M  K  *  S  S  I  L  C  D  L  *  S  I  I  F  I  H  K  Y  S  V  I  F  V  S  N  D  I  W  C  V  *  G  </second_frame>
            <third_frame>   I  L  P  V  F  S  L  S  I  A  G  H  R  A  L  F  S  L  V  V  S  V  R  S  T  G  K   : G  *  C  *  L  Q  I  *  I  V  E  C  N  L  E  I  L  N  G  *  Y  R  *  Y  C  E  G  E  E  S  S  F  C  D  R  G  D  N  F  F  *  C  S  C  K  S  G  G  Y  P  G  S  E  E  R  T  V  Q  E  R  L  H  *  Y  S  Y  S  N  G  A  R  I  V  Y  P  H  K   : V  D  C  *  K  W  F  S  S  S  G  L  L  H  I  F  I  K  H  S  *  L  F  E  V  S  I  T  C  Y  Q  P  R  R :   F  R  E  H  I  *  D  I  T  T  G  Q  T  V  N  S  G  S  Q  *  G  S  N  G  Q  P  S  K  R  A  R  R  R  T  G  *  E  K  T  F  V  L  C  S  S  T  N  I  I  Q  D  Y  I  G  Y  G  S  R  V  S  C  S  I  S  T  R  *  R  E  T  S  C  *  T  Y  I  *  I  F  R  F  P  R  G  L  M  K  L  I  V  L  *  L  T  *  S  E  V  Q  F  Y  V  I  Y  R  A  *  S  L  S  I  N  I  L  L  Y  L  F  L  M  I  F  G  V  F  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95047" stop="95226"/>
                    <exon start="96435" stop="96534"/>
                    <exon start="97441" stop="97697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDIDDIAKEKRVVFVTVGTTSFDALVRAVDTPEVKKELFKKGYTDILIQMGRGLYIPTKSTAENGSPALDYFTYSSSIADYLKSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCARPQTLYKTISDMDPGSLVPYQPGDAKPVAELIYRYLGFPED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94515" e_stop="94555"/>
            <exon e_start="95013" e_stop="95226"/>
            <exon e_start="96435" e_stop="96534"/>
            <exon e_start="97441" e_stop="97680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.685" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94515" e_stop="94555" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="94556" i_stop="95012" i_length="457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95013" e_stop="95226" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="95227" i_stop="96434" i_length="1208"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96435" e_stop="96534" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.685">
            <gDNA_intron_boundary i_start="96535" i_stop="97440" i_length="906"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97441" e_stop="97680" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94515" stop="94555"/>
              <exon start="95013" stop="95226"/>
              <exon start="96435" stop="96534"/>
              <exon start="97441" stop="97680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCTCACTCGTCGTCTCAGTTCGCTCCACCGGAAAAG : ATTTGAATTGTTGAATGTAATTTGGAAATTCTAAATGGGTGATATAGATGATATTGCGAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTTGTAAGAGCGGTGGATACCCCGGAAGTGAAGAAAGAACTGTTCAAGAAAGGTTACACTGATATTCTTATTCAAATGGGGCGAGGATTGTATATCCCCACAAAG : TCGACTGCTGAAAATGGTTCTCCAGCTCTGGATTACTTCACATATTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCACGCAG : GTTCAGGGAGCATATTTGAGACATTACGACTGGGCAAACCGTTAATAGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTCGCAGAAGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACATTATACAAGACTATATCGGATATGGATCCAGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATATATAGATATTTAG</gDNA_template>
            <first_frame> S  L  L  T  R  R  L  S  S  L  H  R  K  R :   F  E  L  L  N  V  I  W  K  F  *  M  G  D  I  D  D  I  A  K  E  K  R  V  V  F  V  T  V  G  T  T  S  F  D  A  L  V  R  A  V  D  T  P  E  V  K  K  E  L  F  K  K  G  Y  T  D  I  L  I  Q  M  G  R  G  L  Y  I  P  T  K  :  S  T  A  E  N  G  S  P  A  L  D  Y  F  T  Y  S  S  S  I  A  D  Y  L  K  S  A  S  L  V  I  S  H  A   : G  S  G  S  I  F  E  T  L  R  L  G  K  P  L  I  V  V  V  N  E  D  L  M  D  N  H  Q  S  E  L  A  E  E  L  A  E  R  K  H  L  Y  C  A  R  P  Q  T  L  Y  K  T  I  S  D  M  D  P  G  S  L  V  P  Y  Q  P  G  D  A  K  P  V  A  E  L  I  Y  R  Y  L  </first_frame>
            <second_frame>  L  F  S  L  V  V  S  V  R  S  T  G  K   : D  L  N  C  *  M  *  F  G  N  S  K  W  V  I  *  M  I  L  R  R  R  R  E  *  F  L  *  P  W  G  Q  L  L  L  M  L  L  *  E  R  W  I  P  R  K  *  R  K  N  C  S  R  K  V  T  L  I  F  L  F  K  W  G  E  D  C  I  S  P  Q  S :   R  L  L  K  M  V  L  Q  L  W  I  T  S  H  I  H  Q  A  *  L  T  I  *  S  Q  H  H  L  L  S  A  T  Q  :  V  Q  G  A  Y  L  R  H  Y  D  W  A  N  R  *  *  W  *  S  M  R  I  *  W  T  T  I  K  A  S  S  Q  K  N  W  L  R  E  N  I  C  I  V  L  V  H  K  H  Y  T  R  L  Y  R  I  W  I  Q  G  L  L  F  H  I  N  Q  V  T  R  N  Q  L  L  N  L  Y  I  D  I  * </second_frame>
            <third_frame>   S  S  H  S  S  S  Q  F  A  P  P  E  K  :  I  *  I  V  E  C  N  L  E  I  L  N  G  *  Y  R  *  Y  C  E  G  E  E  S  S  F  C  D  R  G  D  N  F  F  *  C  S  C  K  S  G  G  Y  P  G  S  E  E  R  T  V  Q  E  R  L  H  *  Y  S  Y  S  N  G  A  R  I  V  Y  P  H  K   : V  D  C  *  K  W  F  S  S  S  G  L  L  H  I  F  I  K  H  S  *  L  F  E  V  S  I  T  C  Y  Q  P  R  R :   F  R  E  H  I  *  D  I  T  T  G  Q  T  V  N  S  G  S  Q  *  G  S  N  G  Q  P  S  K  R  A  R  R  R  T  G  *  E  K  T  F  V  L  C  S  S  T  N  I  I  Q  D  Y  I  G  Y  G  S  R  V  S  C  S  I  S  T  R  *  R  E  T  S  C  *  T  Y  I  *  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0093E12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95047" stop="95226"/>
                    <exon start="96435" stop="96534"/>
                    <exon start="97441" stop="97679"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDIDDIAKEKRVVFVTVGTTSFDALVRAVDTPEVKKELFKKGYTDILIQMGRGLYIPTKSTAENGSPALDYFTYSSSIADYLKSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCARPQTLYKTISDMDPGSLVPYQPGDAKPVAELIYRYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 4304 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 5808 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5808 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:35:18
-->
