<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:15:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0079F24-qtQJ5/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0079F24-qtQJ5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079F24-qtQJ5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300172" ref_strand="+" ref_description="SGN-E300172 [cLEW-17-C3]">
      <seq>ttttcttcaacaattttctattgacccgcgccacacgatatgcttttctctctctctctctctaaatccaagctttactcttgactatggtctggcaaaaaccctattctgtttgggaatgtctcagttttagtctgggaggtttttgttgagctagttgacagagaaaggggggataaaggaggaaaatggaaggaaatgagcatgaattaatgttggcatgtgtgatttcggggacccttttctctgtggtaggttctgcctcttttgctttactttgggcagttaattggaggccatggcggatttacaggtttacatattgacatgctttccggtgaatgaagtgccaaacttggaagaattggctaaccttatgtgttgtggcattggctcatttccctattacttacccaagaatgcctccaggagctcaatataagtcggaggaagtttggtatggagtaactgaaaagttggagaagagcatggatacatggaaaatacaatacctctcacttggaaaggttacctgaatcaacaatgttcttgacaccattcccgcatacatcatgtttctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079F24-qtQJ5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0079F24.1" temp_strand="+" temp_description="C12HBa0079F24.1  AC235572.2 htgs_phase:2 submitted_to_sgn_as:gi|238909029|gb|AC235572.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-79F24, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9251" stop="14228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9551" g_stop="9709" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9710" i_stop="9786" i_length="77">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9787" g_stop="9943" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="313" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9944" i_stop="13657" i_length="3714">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13658" g_stop="13928" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="584" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079F24.1" gen_strand="+" ref_id="SGN-E300172" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079F24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9551" e_stop="9709"/>
          <exon e_start="9787" e_stop="9943"/>
          <exon e_start="13658" e_stop="13928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCAACAATTTTCTATTGACCCGCGCCACACGATATGCTTTTCTCTCTCTCTCTCTCTAAATCCAAGCTTTACTCTTGACTATGGTCTGGCAAAAAACCCTATTCTGTTTGGGAATGTCTCAGTTTTAGTCTGGGAGGTTTTTTGTTGAGCTAGGTATGTAAAACCTTCAACTTACAGAAAATTTTGTGTGTTTTCTATTTTTGTAATAAATATCACATTTTTGGATGCAGTTGACAGAGAAAGGGGGGGATAAAGGAGGAAAATGGAAGGAAATGAGCATGAATTAATGTTGGCATGTGTGATTTCGGGGACCCTTTTCTCTGTGGTAGGTTCTGCCTCTTTTGCTTTACTTTGGGCAGTTAATTGGAGGCCATGGCGGATTTACAGGTAATTTTTTACTTCCAAACTTTTCATATCTGATTCCTTTTCTCATATGCTATTTAGTAAGCAATAAATTGTATCCTGGTACTCTTAGTATTTGAATAAAGACTGAAACTTTTAATTGATTTTGAGTCATATAAGCTCACAAGCATGTTGATTCCAATAATCTTGAATTTACATGATATTTTTCTCGCTAAATTTTAAATGAGGATATGTTTTTGTGAGCTCAAATAGTGATTTTTTCCGACTCCTGCGAATATGGGGCTTTGCTTGTATGTTTCCCCCATTTTCAGCATAGATAGGTAGAGAACTAGAGAATTAAGTTGAATTTGGAAATTCATGTAGATTCCCTGTCAAATGCTGCACAAGGAAATCGATTTAGGACAATGAAAAAATAAGAGTGAAGCTGCAAAATTTGCTAGAGATAGTAGAGAATTTTGGGCCAGAAAAAGGGAAGAGAAAATAGTGTATTTTGTTAGAGAAGGTAGAGAAGGTGGTGTTGGATATTATGAAGCTCTTTTTTTGGAGTTAACAAATGAGAAAATGGTGGATTTTGTTAGTCACGGTGGCCTATAGTTAAACTTAACACATTTTTTTTGATAAATCTGTTAAGTTTAGGGTAAAGGACCCAAATGAACAGCTCTTAGTATGCATTAAAAAACCATTTCAATCAAGTGAGATGTATTAAGGAACAAAATAAAGTAACACCTGTACATCAAGGACCATTTTGATTGTTCTCTCCATAGAGTTTTATCTTTTTGCTTATCTTAAATGTGGTTCAAATGTGAGTAACGAAGGTCATCTATACAGGTGTTAGAGCTATACATTTTTTTTTTGATCAAGTAAAGTACTTCCATGTAGAAACATAACTAAAATTGTCATATACAAAGGTTATACAAAAGATCAAAGACTACAAAATATGATTCTCTGCAAATTCCATCCAATCCTTGGTACAACATAAAGCTTTCTCTTTGTACAAAAAGAAAATAAGGGAGCGGAGAATACTCCTCTACTGCAAGAAACTCGACTCTACACCTTAAAAAAACTCTCCTAGTTCTCTGTCTCCAAATGACCTACCTTAATGCAACCGGAAACACGTTCCAAGCCTTTCTTTCTCTCCTCTTTCTCCCTCTCTTTCATCTGAGCTCCAAATCTTTCAAAGTCCTTGGCATTGTCCAAGGAATGCAAAACCACCTAACATATTCCACCATAATCTCATGGTAAGTCCACAATGTAGAAGAAGGTGATTCACCTCCTCGCCCTTCTCCTTGTACACGCAAGACCAACTAATGCTGGCAACCTTCTGCTCCAAGTTTTTTTTGCTGCCAGAATCACCCCTCTAGTGGCTAGCCCAAGTGAAAAAAAAACACGTCTTCCTCAGCACACTTGGATCCCATATTGCATTACATGGGAACTCAACCTCCACCTAGCCAAAAATTTCTCACAAAAAGACATCATAGAACAGTCCACTACTTCCTCCACTCGCAGTCCCCTTCGATCACTTCCTCTGCTGTAACTGTACATGCAAACTCAAATAAAAAAAAGCCCATTGGCCAATTAATAAATGTTCAGCCCTTTGTTTGTTTCCATAGTCGGTTGGCCTATCCCCTGATTTCTGCAAGAGTCGTTGTTTCTCCGACTCTGTATTCAAATGCACCCACTAGACTCCTCTTTAGCACTTCACTGTGCTCCTCTGGATCATCTTTAACAAAGATCCTATTTCCCTTTAGAACTGCCTTCTCCTTTCAGCAACTTTTGACCCCTTGTTAGCCTATTTACTGCTTCTTAGTACTGTAGCATATGGAATGTCCCTGCTCACCAGTCTATGATTCCCCAAATTCATTAACTTTTTGCGACTTTTAATGAATCTCCCCACCTTTTCCGTAATGCTCAACCACCCTGAATCGAATGCTAGCTCAAGGATGATAATCACTCCCCTCCTCCTGCCTCTCACATTTTTAGACTGATGTAGCGGCCGTATTTATTGTAGTTTCTAGCTGGACAATGCCAGATCACACATCAGATCTTTTGAGTTGCTGGATTAGAAGGGAGGAAGTTGAAGTTAAAAGAGATGGTGGAGATTAATACCATCCTGTATATGGTGGTCAATATGGTAGGAAAGATATGAGAGATGCTTTAAAGATAGGTCCAATTCCATACATAAAGTAAAATGGAATTGTATTGAAGCTCTACTTCTTTGGTGTAAACTACTTTGTATAGAAGATGTAGATCAGATTGTAGAGTTGATAGGAAGCTTGTAATTGCTCATTTTTGAAGGTGGCCAGCATATATTAATGCTGATGAATACAATTTACCATTTTCAAAAAAAATAAAATTTATTGTAGTTCCTAGAGCAGAAAACTTCTGAGAAGCTGTCTTTCTTCTTCCATCTCTTCACCGTGTTCCCCTTTGTCAGTGATGCTTCCGCAATGTATGCACGATCCATTCCGTTGTCCTCTCATTGGAAGTTATTCTCTTAATGGAGTTCCAATTTCTCTCTGTCCAGTCATACCCAGCTCCCGCCGTACCAAGTGTTCTTGAGATGTTGTAGGCCTTGAATTCAATTGCAAAATAAATAGCGTCTTCCATTTTGGAACGAGTGCCAAAGGGGACAGAGGAAAGAAAGAAAAAAAAGAGTGGAATTCGGTGATCAGAAGGATTTCCGGAGGCGTAGGACCCTACTGGGTTAGGACATTCCTCGTCTTTTTGTGTCTGGGAGCTTTTTTTCCTGTTTCTAGTATATCACTATCAACTAATTATGGGCTCATTTCACATGGTTTTTAAGGGGGGAGAATTTGTTGCAAACATCAAGAATTGACAGGTTCCTAATCTTCCAAGAATGGTGTGATAGGTTCAAACCAATCAAACAAATAGGGATGCCTTGATTGATATCAGATCACATCCTATTCTTCTTGAATGTATGGATTGGGAAGCCACTGTCTTATTCAAGTTTGAAAATATGTGGCATCTGACAAAAAATCGCTGGTGACAGGGCTACTTAATTAGTGGTAGGCCAGATTTTATGCTTGTGCAGAAATTGAAGAATCTGAAAAAAAGACATCACTAAGTGGAATAGAGAAGAGTTTGGTCGATTTGAACAAAAAAGGACTTGTGTTATTGAATGAGCTTACTTCGCTAAAACAAGCAACAAAAGAAAGAGTCCAATAACAAGAGAAGAAAAATAAACTGAAGCACCTTAGGTTGGAACTACAAATAATGGTCAAAGCAGAAAAGATATCTTGGGGATAGAAATCTATATGTCTTTGGCTAAAAGAAGACGACAAAAAACACCAAATCTTTCAATTAATGGCCAACTCTAGTTGGAGGTACTATTGTATTGACAACCTTAAAAAAAATCAGCGGAAGAGATCATTGAAGATAAAGATACCATCAAAGAAGAGATCCTAAGCTTTTAGGGATTTGGTTGGTTGGTTTTGTTTTTTTTTGGGGGGGGGGGGGGCTAAACACAGAAGATGAGCAGTGGAGACCAAGATGAGCACTCTCACCATTCTTGTTCATCACAGCCATGGAAGGCCCAAGTTAAGCTAGACAAAGCTAACCTCATCTAATGGATTGAAGGATTTACCATTCTAGTAGTATTAGAGTCTCTGCATCAGTGTCCCACCTATTGTATGCAGATGACACTAATATTCTGTGGGGCAGACAAGTTGCAGTTGGAATACCTCAGCCTAATCCTTCTTATTTTCGAATCTATTTCAGGTTTACATATTGACATGCTTTCCGGTGAATGAAGTGCCAAACTTGGAAGAATTGGCTAACCTTATGTGTTGTGGCATTGGCTCATTTCCCTATTACTTACCCAAGAATGCCTCCAGGAGCTCAATATAAGTCGGAGGAAGTTTGGTATGGAGTAACTGAAAAGTTGGAGAAGAGCATGGATACATGGAAAATACAATACCTCTCACTTGGAAGGGTTACCTGAATCAACAATGTTCTTGACACCATTCCCGCATACATCATGTTTCTCATT</genome_strand>
        <mrna_strand>TTTTCTTCAACAATTTTCTATTGACCCGCGCCACACGATATGCTTTTCTCTCTCTCTCTCTCTAAATCCAAGCTTTACTCTTGACTATGGTCTGGC-AAAAACCCTATTCTGTTTGGGAATGTCTCAGTTTTAGTCTGGGAGG-TTTTTGTTGAGCTAG.............................................................................TTGACAGAGAAA-GGGGGGATAAAGGAGGAAAATGGAAGGAAATGAGCATGAATTAATGTTGGCATGTGTGATTTCGGGGACCCTTTTCTCTGTGGTAGGTTCTGCCTCTTTTGCTTTACTTTGGGCAGTTAATTGGAGGCCATGGCGGATTTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACATATTGACATGCTTTCCGGTGAATGAAGTGCCAAACTTGGAAGAATTGGCTAACCTTATGTGTTGTGGCATTGGCTCATTTCCCTATTACTTACCCAAGAATGCCTCCAGGAGCTCAATATAAGTCGGAGGAAGTTTGGTATGGAGTAACTGAAAAGTTGGAGAAGAGCATGGATACATGGAAAATACAATACCTCTCACTTGGAAAGGTTACCTGAATCAACAATGTTCTTGACACCATTCCCGCATACATCATGTTTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9551" PGL_stop="13928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9551" e_stop="9709"/>
            <exon e_start="9787" e_stop="9943"/>
            <exon e_start="13658" e_stop="13928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.994"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="9551" e_stop="9709" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9710" i_stop="9786" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="9787" e_stop="9943" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9944" i_stop="13657" i_length="3714"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="13658" e_stop="13928" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9551" stop="9709"/>
              <exon start="9787" stop="9943"/>
              <exon start="13658" stop="13928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCAACAATTTTCTATTGACCCGCGCCACACGATATGCTTTTCTCTCTCTCTCTCTCTAAATCCAAGCTTTACTCTTGACTATGGTCTGGCAAAAAACCCTATTCTGTTTGGGAATGTCTCAGTTTTAGTCTGGGAGGTTTTTTGTTGAGCTAG : TTGACAGAGAAAGGGGGGGATAAAGGAGGAAAATGGAAGGAAATGAGCATGAATTAATGTTGGCATGTGTGATTTCGGGGACCCTTTTCTCTGTGGTAGGTTCTGCCTCTTTTGCTTTACTTTGGGCAGTTAATTGGAGGCCATGGCGGATTTACAG : GTTTACATATTGACATGCTTTCCGGTGAATGAAGTGCCAAACTTGGAAGAATTGGCTAACCTTATGTGTTGTGGCATTGGCTCATTTCCCTATTACTTACCCAAGAATGCCTCCAGGAGCTCAATATAAGTCGGAGGAAGTTTGGTATGGAGTAACTGAAAAGTTGGAGAAGAGCATGGATACATGGAAAATACAATACCTCTCACTTGGAAGGGTTACCTGAATCAACAATGTTCTTGACACCATTCCCGCATACATCATGTTTCTCATT</gDNA_template>
            <first_frame> F  S  S  T  I  F  Y  *  P  A  P  H  D  M  L  F  S  L  S  L  S  K  S  K  L  Y  S  *  L  W  S  G  K  K  P  Y  S  V  W  E  C  L  S  F  S  L  G  G  F  L  L  S  *  :  L  T  E  K  G  G  D  K  G  G  K  W  K  E  M  S  M  N  *  C  W  H  V  *  F  R  G  P  F  S  L  W  *  V  L  P  L  L  L  Y  F  G  Q  L  I  G  G  H  G  G  F  T   : G  L  H  I  D  M  L  S  G  E  *  S  A  K  L  G  R  I  G  *  P  Y  V  L  W  H  W  L  I  S  L  L  L  T  Q  E  C  L  Q  E  L  N  I  S  R  R  K  F  G  M  E  *  L  K  S  W  R  R  A  W  I  H  G  K  Y  N  T  S  H  L  E  G  L  P  E  S  T  M  F  L  T  P  F  P  H  T  S  C  F  S   </first_frame>
            <second_frame>  F  L  Q  Q  F  S  I  D  P  R  H  T  I  C  F  S  L  S  L  S  L  N  P  S  F  T  L  D  Y  G  L  A  K  N  P  I  L  F  G  N  V  S  V  L  V  W  E  V  F  C  *  A  S :   *  Q  R  K  G  G  I  K  E  E  N  G  R  K  *  A  *  I  N  V  G  M  C  D  F  G  D  P  F  L  C  G  R  F  C  L  F  C  F  T  L  G  S  *  L  E  A  M  A  D  L  Q  :  V  Y  I  L  T  C  F  P  V  N  E  V  P  N  L  E  E  L  A  N  L  M  C  C  G  I  G  S  F  P  Y  Y  L  P  K  N  A  S  R  S  S  I  *  V  G  G  S  L  V  W  S  N  *  K  V  G  E  E  H  G  Y  M  E  N  T  I  P  L  T  W  K  G  Y  L  N  Q  Q  C  S  *  H  H  S  R  I  H  H  V  S  H  </second_frame>
            <third_frame>   F  F  N  N  F  L  L  T  R  A  T  R  Y  A  F  L  S  L  S  L  *  I  Q  A  L  L  L  T  M  V  W  Q  K  T  L  F  C  L  G  M  S  Q  F  *  S  G  R  F  F  V  E  L   : V  D  R  E  R  G  G  *  R  R  K  M  E  G  N  E  H  E  L  M  L  A  C  V  I  S  G  T  L  F  S  V  V  G  S  A  S  F  A  L  L  W  A  V  N  W  R  P  W  R  I  Y  R :   F  T  Y  *  H  A  F  R  *  M  K  C  Q  T  W  K  N  W  L  T  L  C  V  V  A  L  A  H  F  P  I  T  Y  P  R  M  P  P  G  A  Q  Y  K  S  E  E  V  W  Y  G  V  T  E  K  L  E  K  S  M  D  T  W  K  I  Q  Y  L  S  L  G  R  V  T  *  I  N  N  V  L  D  T  I  P  A  Y  I  M  F  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079F24.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13686" stop="13880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKCQTWKNWLTLCVVALAHFPITYPRMPPGAQYKSEEVWYGVTEKLEKSMDTWKIQYLSLGRVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:16:03
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