<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 01:14:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341053" ref_strand="+" ref_description="SGN-U341053        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 1e-35, score=88.6)">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6435" stop="7624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6735" g_stop="7324" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U341053" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6735" e_stop="7324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTTCCTATATCAGACTTCCTAGTACTCCAATCTTTGTTATTTCGGGAGATTTTCTCTAATTTTTCAGCAATCTCAACATAAGGGCATTCTCCATAAGATCCACCTGCTATAGTGTCCAACATCACTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGATTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAATTGACTCTCCTGGTAGTGCCACAAAGTTGTTCAGTTTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTAAGAAGACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGTATGGAAACTCAGTGAACCATATAGCAGCCTCCCCCGTCAGTGAGAGAGGAAACACTTTGAGACCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTATCTTAGCTATATGGGCATATGGATCCTCAGAAAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27113" stop="14885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26825" g_stop="26604" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26603" i_stop="15679" i_length="10925">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15678" g_stop="15185" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="716" r_length="494" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26825" e_stop="26604"/>
          <exon e_start="15678" e_stop="15185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGTCTCCATTCCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATGGACACGACGGACCGTCATGGACTCCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCATGACGGACCTTCACAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTTGCTAAAAAACCTCCGCATTCATCTTTGGACAGATTTCATGGAAATAAGGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGATACATTAAACTTAAGGAAAAAGTTTTATTAATACCGTGAAACCACGATATATCAAGACTCTACCTAGACATTGCACTAGTTAGCCTTGACGGGAGTCTTAGGAGGAGGGAGATTCTTATATATGTTTATGTTATGATAATATATAAGGTATATATGATGAACATGACACATTTTTGATATTATATGTTGATTATTTCATTTATGAATATTCCTTGGGTTATAATGTTAATATATGATTGAATGTAGACCTAAATGTCATGATGTGTAAAGTTGGACATTGGTCATGTTTTCTTTTTGAGGATACTTGATTGAGTAAGGTTATGGGGCTTTGCTTGGTCATTGCACTTGTTGACTTAATAAGGACTTGTGAGTAGTTGTCTTGCTTATTATGATATGTTTAACTCTTATTCATCCTTGTGATATTATTTCTTGATGTTAGGGTTTTAGTAAATCACGGTTTCAAGTATGTCGAGGGAAGTATTACTTGTTGAGATAGTAAGCATGTTGGTTGATTGATATAACTTACTTGACTTTGCATTAAGTCGCTAAAGGGGTAAAAATAGCATGTTTTGATAAAAAGTACCTTTTAGCATGTTTTGCTTGTGTATATGCATAAGATCTCATACTTAGTACATGTGGAGTACTAAACCCATTTTCTTTCCTTTTTCCCAAACATTTTAGGTTCTGATCGTTGAAGAGTTTGGAAGGCGACATTGTTCAAGGCTTGGATTCTTCCTTTCATCCAAGTGGGGTAGGTCCTCAACTTTCGAGGGCAAGTCAGCCTCTAGATTTGAATTTTGTTATGAGATTATTGACTCTATCTTTCCTTTCCTTTTTAATTGAATATTGTACTTTCGTATGACCTATACATGGTCTTGTTGAATTGATGTAAGAGTTATGCACATATTGTGATATTCGTTTATATGGTATGGGATGAGACAATCGTTGAGACTATTTTTATATTTTTATATATGTATATGCAATAAAAGTAGAAGGCTATGTAACCTTCCTATATGAAGGGTCTATGCATGCTTAATATGAATATATATTATGTGTATGTGGAGGTCTATTTAAACCTCCAAGTAGTATAATGAAAGTTTTAAATTTTTCCGCATTTTTCAACCTATAAATGTAATGACATGAGACTAAAAGGCTAGTATTAGTCCTTGAAAAGGACAACGATGCCGGTTATGTCTAGGGGGTAAACCCGGATATGACAAAACTCATGTGGTTGTATCTCATCTTATTGTCCTGTTTTGACTTGTTTTCTCACTTTTATGGTTGTAGCTCATGTGTTGCTTTCAAATACTTTATTTTTGTGGTTGAAGATTTATAATGACTTGTTTTCTCACTTTTATGGTTGTAGCTCATGTGTTGCTTTCAAATATTTCATTTTTATGGTTGTAGATATATAATGGCTCCTGTCAAAAGAAAACTTGAGGAGCATGACTTGATGTCCCTTGTTGGCAAAAGCTTTAAAAATTCTGACTTAGTAAATTTGTTGGAATGGGAGGATACAACAAGGAAGCACAATGAGTCATTCTGCTTACTTTGGTTTACACATAATATACTTTTGCCGAAGGATCCGAACAACAACATACTGTTTAAATATGTCAATTTTTGTCAGGATATTGAGGCTTTCAACAACTACCATTAGGGTCATGAGATCTTTCATGCAACTCTCGACTACTTGTTGAATCCTTTAGCATAAAAGACCGGTAACATGTTTGGGTATCCATAGGCTTTCATGGTAAAACTGAATATTCTTAATATTTTGATATTATATTAAGTAATAATTAATAATTCAACATTTGATTATTGACATGTTTTCCTTTTATACAGGCCTGGTCATTTGAAGTCATTCCTTATTTGATCCATCAAGTAATTGTACAAGAACAAAGATAATCTCCAAGGATGTTGAGATGATTGATAGCAAGAACAAAAATTACAAAAGATGGGCATATTCCAGATCTCTTTAACCCTCCTGTTGATGCAGTAAGTTATTATTAGTATATTACAAGAATATGTTGCTATAAATTAATCTTATGTTGCTACATATTATTCATTAATCGCAACATCTGACACAAATATTGCTACAGATGATTCATCTGTTGCTACATGTGGCACAAATGTTGCTACATATGATTTTTCTATTGCAACATGTATCACAAATGTCGCTACAGGTGATTCGTCTGATGCAACATGTTGATGCGCTCAAACTTACTTCTCAAATAAGAAGTAAAACGGTCATATCAAGTAAACAACCCAACTAATGAGGGGGAGGGGTTTATTTCTAAATGAATGAAAATAACTAACTTAGTTAAAGTAAACAACTAACAGATTCAAATATTGGAGTTTATCAATTAATAAGAATAACTAGGGTTTAAGTGTTCCCCACAGGTTTCTAACTTGATAATTCTAACTATAACAATTCTTTCCTAGTATCTTGCATGCAAAGTGATAAGTTATGTATTTCTAAATCCTTGGTCCATGATCTAGAAAATTTCACTCTGCACCTTGGTCAGCTACATGTGTTGTTGTACTAATGCTTACCTTTACCTCATATTAAGCATTGTGTTCGATATTTGACTAAGTTATTACATCATACCAATCAACACTAGCTTATTAGATAGTATACACTAAATCTATGTTGATAATTCTTTTCCTGTTATCTACCTCCTTGGTCCGGCAAGTAGCATTAAGGCGAGTTCTAACGTTGGTCATCCATTAAAAATATTTCTAAACGAAAGAATTATCAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGTTAGGTTTTACCTCATTATTCACTCATGGTTCCCACAACCCTAGTTATGGAGTTTAGTTACCCATAGTCATAATCACAATATTCATATATGTAACAGTGAAACACGACAGATTAGGTGACGACTCGTCGTGAGTACGATAGACCGTCATGGGGTCCGTCATGTCTTACTTCAACTATGTTTATGTGGAGACCCCTGAAGAAAAGTCTCTGATAGTTATGACGGCTTAGCAGGACAGACCATCGTGACAATGACAGTCCGTCGTCGATGTCCATTGTGGGGTACTTAGAAAAAAGTATAGAGACCCTTACGAGAGGGGTTTCTAACCGTCACGATGGTTGTGCAGGATGGACCGTCGAGGGTATGACGGTCTATAGTAGATGTTCGTCAGAGGACATTAGTAAAAGTAGGAGACCCTTAGGACAAGGATCTCTGACAACCATGACGGTTGTGCAGGATGGACCGTCATGGAAACGACGGTCCGTCGTAGATGTCTGTCAGATGTCACTTAGAAAAAGTATGGAGACCCTCAGGAGATGGGTCTCTGACTGTCATGACGGTTGTGCAGGACAGACCGTCGAGGGTATGACGGTCCGTTGTAGATGTCCGTGAGAGGACACTTAGAAAAAGTTGGAAACCCTGAGGAGTAGGGTCTCTGACGACCAAAACGGTTGTCCAGGAAGGACCGTCATGAGAACGATGGTCTGTCGCATGTGTCCGTTGGTGAACACTTTAGAAAAAATGAACAGTGGGGTGTTGGAGCAGACCCTATGACGGTCCATTGTGGGTGCGAAGATCCATCATCGGGGTCTCGTTCTATCATTCAGTGACAGAACTGAGGATGCCATATTCATCCTCTATGACTCAAATGGAATACTTAAGTGTTAACCTACATCTTTCTAACCCAAATACCTAGAAAACTAGCAATGCTAAAACACCTATTTCTAGAGTTTTAAAAAGGCAATTTGAGGATTCTCAACGTAGGTAAGACAAAATTGGATCAACGAATGAAGACCCATCAATAAAAAATAGGATAATACTAATTGAAAAACAAAAATGCAATGCAAATGGGTAGAAATTAGAGACACATACCTGATAAGAGGAGAAAGACAAGCAAGTGAGGAACTTGGTTAGCAAGAACAAAACCATAACAGCAGACTACGACCATTAGAGAGTAGATTTTAGGAATTTGGGGATTTGGGGAAGTGATCAGTTGATAAAGAAGAGAGGTAGGAAGTTGGAAGTTTAAAAGGGAGGGAAATGGGAGAAAGAGGGAAGGAAATGGGTGAAATGAAGGGATGGGTTTTTTAAATGTTAACAATTTTCAAAATACTCCCAACTGGGTTGGTTAGGTACGCTCATTAATGATGCAACGAGTCCCCCACGATGGTCCGTCGCAGATGCAATGGTCCGTCATTGGTTTCGTCGAGTGTGTCCTAGTTTTGAAAATAAATGAAAGACGTACCTGGCATGATGGATTCATGCGACGTTCTGTCGATGTATCCGTCAGTGACTGTTGCAGAGTGATTTTCTACAGAATTTCCTGGTGATGTGGTACCTGCAAATTTATAACCCATTAGTAGAAAATGCTACCATTACTAGAAAGAAAACTATAGGTATTGGGTTGCCTCCCAACAAGCGCCTGATTTAACGTCGCGGTACGATTGAAGACACTTGATTACTCAGACTTCATCAAGATGGTATGCCTCGATCACTTCATTCGCCGATTTAGCATGCTCAAAATAGATTTTTATGCATTGTCGATTCACCTTGAACCGCACACCCTCCTTGGTTTCCAACTCAACTGCTCCATGAGGGAATAGTTGGGTAACCAAGTAAGGGCTAGTCCATTTGGACTTGAGCTTGCCCGGAAACAAGCGCAACCTAGAATAGGTAACACCACCAAATCCCTAACCATAAAATCTCGTTTTTCAATTTTTAGGTCATGGTACTTCTTCATCTTTTCTTTGTAGAGGGATGAGCTTTCATAAGCTTTCAGGCGAAATTCATCGAGTTCATTCAACCCAATTAACCGTTGTTCTGCAGCTTCGTTCCAATCCCCTTTCAACTTCTTCATAACCCACATGGATTTATGCTCTAATTCAACTGGAAGATGACAAGCTTTACCATATACAAGTTGGTACGGGGACATACCTATGGGAGTCTTATACGTTGTCCGATAGGCCCAAAGAGCATCATCAAGCCTCCTTGACCAATCCATTCTACTAGCGTTAACTGTTTTTGACAATATCTGTTTGATCTCCCTATTTCACACTTCAACTTACCCACTAGTTTGAGGATGGTAAAAAGTGTCCACATTATGGCGAACCCCATATTTCTCTAATAATCCCTTGAACAATCTATTGCAAAAGTGGGAGCCCCCATCACTAATAATTGCACTTGGTGTGCCAAAACGAGAGCATATATTCTTTTTTAAGAACACAGTGACACTCTTCCCTTCATTGTTTGTGAGGGCAATAGCTTCCACCCATTTAGATACATAATCAACCGCTACTAAAATATACTTTATTCCATGAGAACTCACAAAATGACCCAAAAAGTCAATACCTCAAACATCAAATAACTTAATCACAAGAATGGGGTTTAGAGGGAGCTCTTGCTTTCTTGAAATGCCGACATCTCTTTGGCAGCTATTACATGCTTTAGAAAACTCATGAGCATCTAGATGAAGAGTTGGCCAATAGTAACGACATTGTAATATCTTATGAGCGGTTCGGATACCACTATGATGTCCACCAACGGGTGAGGAATGGAATGCCTCTGAAACACTCAACATCTCACATTCTTGCACACAACGCCGAATAAGCCAGTTGGCACAACTCCTATATAATTACGGTTCATCCCAAAAGAACTTTGTGACATCGTACATGAACTTTTTTCTTTGATGAAAGGACAAGTCTGATGGAATAATATCACTAGCCAGATAGTTTGCAAAATCTGCGAACCATGGAATCAAGTCTTGTAAGGCAGCCAATACATGCTCATTGGGGAAAGTATCATCTATATCAGTCTTATCCCCTAAATCTCTCATAGTTTCATCTTCTAGACGGGACAAGTGATCGGCAACTTGATTTTTGGTCACTTTTCTATCCCTCACGTCAAAGTCGAATTCTTGTAGCAGTAATACCCAACGAATCAACCTCAGTTTCACATCCTTCTTTGCCATCAAATATCTCAATGTTGAATGGTTCGTATGCATTATAACTCTAGTACCTAGCAAATAGGAGCGAAATTTTTCAAAAGCAAAGACTACTACAAGGAGTTCTTGCTCAGTCACTGACTAGTTCTTCTGAGCTTCATTTAGGGCTTTACTAGCATAGTAAATGGGGTGAATGATTTTGTTCTTTCTTTGTCCCATTACTACACCAAGAGTAACCCCACTAGCATCGCACATCACCTCAAATGGACTGTTCCAATCCAGAGAAATAGTCATAGGTGCAGACACCAATTTTTCTTTTAGCTTGCCAAATGCTTTAAGACAGGATTCATCAAAATAAAATTTACAATTTTTTTTCCAGAAGTTTGCATAACGGATGTGCAATTTTTGAAAAATCTTTGATGAATATGCGGTAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTTACAGAGAAAGGTGGGGGAAGTCTCTTTATTACCTCGACTTTAGCTCGATCAACCTTTATTCCCTTTTCTAAAATGCGATGACCCAAAATAATACCTTCTTTCACCATGAAGTGGCATTTTTCCCAATTTAGTACTAAATTGCAGTTTTCATATCTCTTAAGGACCTCAGATAAATATTTCAAACACTGCTCGAATGATTCACCAACCACAGAAAAACATCCATAAAAACTTCTATAGTATCCTCCACCATGTCGGAGAATATCGACATCATACATCTTTGAAATGTGGCGGGTGCATTGCACAAACCAAACGACATTCTCTTGAACGCAAAGGTACCATATGGACGAGTAAAGGTGGTTTTCTCTTAATCTTTTGGTGCAATAAAAATCTGATTATACCCTGAATATCCATCAAGAAAACATTAGTACCCTTTTCCGGCAAGTCTATCCAACATCTGATCCATGAAGGGCATACGAAAATGGTCTTTTTCAGTCCATGCATTTAATTTACGGTAATTCATACACACCCTCCATCCAGTAACCGGTCTCATTGGAACAAGTTCATTTTTCTCATTGGGGACCACAGTTATTCCCCCTTTATTAGGTACACACTGAACAGGGCATACCCAAGTACTATCGATGATCGGATATACTCCGGCATCCAACCACTTAATGATTTCCTTCTTCAGGTTCTATTGCATAGGTGGATTTAAGCGTCTCTGGTGCTCAATACTTGGCTTATGATCGGGCATGAGTTGGATTTTATGAGAAGAAATACTAGGAGGGATCCCAATAATGTCCGCAATAGTCCACCCAATAGCTCTTTTGAACCTTTTTAGAACTTGTACCAAACTCTCAACTTGTTGTTCATTCAGGTCTAATGCAATGATTACCGGCAAAGTGTCACCAAACTCTCAACTTGTTGTTCATTCAGGTCTAACTTTGAAGCCTCCTCTATAGATGGTTTCGTGGGTGGAGACTCGCGATTATTCATGTCTAACTCATATTTCCTCGATTTAAACCAAACATCACCTCGATCAAGAGTCGCGACTAATGACTCATACTCTTCAATGCAATCATTATAAAAATTCATTATCACTACCTCTAATGCTTCTACACCTAGACGTTCTTTTATTTGTGTCTCAGATGACTCACCAACTTTGTAGGATATAGAAGATACCGATTGGAGCTGACCACTCTGCCTCATGGACTTACAAATGTTGAAGGTTACTTCATTGTTCAATCGAAATTTCATATGCCCCTTTTCCATATCAACTAAGGCTCTAACTGTAGCAAGGAATGGCCTCCCAAGAATAGTAGGCACTTCAAAATCGACTTCACAATCAAGAATTACAAAATCTGCCGAAAATATGAACGACTCCACTTTGACTGGCACATAATGGAGTATCTGTATAGGCCTTTTTACTGTTCGATCGGCCATCAGTAGCCTCATCGCAGTGGGCTTTGGATCACCCAAACCCAACTTCGTGTAAATCAAGAGGGGCATGAGATTTATGCTTGCCCCCAGATCACATATTGCTTTCGCAAAATGTAATAACCCGATTGTACAAGGAATAGTGAACTCACCCGAATCTTTTTTATTTTGTACCAGAGATCTTGTAGCAATAGCAGAGATCTTGTAGCAATAGCACTACAATGCTGCATTCTATCATAATCCTCAAAAGTGACCGATCTTTTCTTTGCAACCAGATCTTTCATAAATTTGACATAACCGGGCATTTGTTCTAAAGCTTCTACCAAAGGGACATTGATAAAAATCTATTTCAACATTGTTATAAAACAATGATATTTACCATCCTTGGTCTTTTTCAATAATCTTTGAGGAAATGGGGCCTCTACCACTTTATCATTATCTTTTGTCACCTTTTTCTCATTAGAGGGCATAGGTGGGTTAACGGTTTGGTTACCACCGTGAGTAGTGATTGCCATACAGTGTCCATCATTTTTCAGATTTTGGACAGTGTTGCTAGGAAGAGTGCCCGGTTGCCGTATGTTCACAGTTGTAGATAATTGGGCCAATTGTAACTCAAACTGCTTAATCGATATTGCATGTGTATAAACTTTCTGCCCAATACCCGCTAAATCACTCCTCAACTCTTTAGTGTGCTCATCACTAGCATCGAACCTCCTCATCATTTTGTGAAACATATCCTCAACTCGCGTCAGACTACCTCCACCATACCTAGGAGTAACTTCACGATTTTGAGGAGGAACATAGGGCCCATTCCTATGATTTCTATTATCATAGTTACCCTTGTTGAAGTTGTTGTCGCGGTTGTAATTTCCATCTCGAACATAATGACCCTCACGGTTATAGTTACCATAGATCCGACGTTGGTTCCCTTGACCTTGGCGCCAATTCTCTTGATTAGAGCCGTGGGCACTTGGTCGAAAACCCCCCGTCTGCTCATTTACCGCATAGGAATCGTCCTCACAATAGCACTCATCATTTTGTGGCGGTGGTTTTGACATGTAGTTGACTGCATTTTTCTTTTCTGCACGCCAGTGACATGTTTTAATACCAACCCAAGCTCAGTTCTCATCTGAGCCATCTCTTCACGAATCTCATATGTGGCTGGATTGTGTGTGGATTGCACTGCGAAGGTATTTCTCCCAGTATCTGACTTCTTAGTACTCCAAGATTTATTATTCCTTGAAACTTTCTCTAACTCTTCGGCAATCTCGGCATGAGGACACTCCCCATAAGAACCACCCTTTATAGTATCCAATACCGCTTTATTATTATCATCCTGTCTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATGCGGTGATTGGGGGCGCTTCTCTATAATGAGGTGAATTTATATCAAGAACTACTAACTGACTCTCCTGGTAGTGCCAGAAAGTTGTTCACTCAATCTTTGTGGTTTAGTTTCTTGGAGATCGGGTAGTAATTGATACGCTCAAACTTACTTAACAAATAAGAAGTAAAGCGGTCGTGTCAAGTAAATAACCCAACTAGTGAGGTTGGGATCGTTCCCACGAGGAAAATAGTCTAGACTTAACTTCAACCTGTTATTACTATTGTTTGGTCAATGACTTCCTTGGAAAGTAAAAACAATAAAAGGGGGGGTTTCTATTTCTAAATGAGTGAAAATAACTAACGAAATATAAAGAGACACTTAACAGCTTTGAATGTTGGAGTTTAATCAATTAATCAAAGTAACTAGGGTTTACGTGTTCCCCACAGGTTCATAACTTGATAATTCTAACTATAACAATTCTTTCCTAGTATCTTGCATGCAAAGTGATAAGTTATGTATTTCTAAATCCTTGGTCCGGCATATAGAAAATCTCACTCCGCACCTTGGTCCGGCTACCTGTGTTGCTATCCTAACCCTTATCTTTACCTCATATTAAGCATAGTATTCGATATTTGACTAAGTTATTACCTCGTACCAATCAATACTAGCCTATTAGATAGTATACACTAAATCTATGTTAATAATTCTTTTCCTATTATCTACCTCCTTGGTCCGACAAGTAGCATTAAGGCGAGTTCTAACGTTGGCCATCCGTTAAAAAGACTTCTAAGTGAAAGAATTATTAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGTTAGGTTTTATCTGATTATTTTCCTATGGTTCCCACAACCCTAGTTATGGAGTTTAGTTACTCATAATCATAATCACAATATTCAAATATATTATATAAGAATTCATGTACTTACTTCAATGAGAAAGATTAAAATACGAAAGTTTGTTTGATTAATCACCAAAAATCACTTGCATGAATCTCAAAGTAATCAATAATCTCACAAAATCAAAGTAATCAATGATCAATAATCCAGAGTTTAATAATCTAACTAATAATACTGAGTCTAACCTCACAGAGTCTAACAATCCAGAGTCTAACCTCAAAAATGAGGTTTTTTGAACTATTTATAAAAAATAAAAACCTAATTAAATAAGGACTCTATTTGCTGGAAATCTGCCAAATTGCGGCTGGGTCGAGTGACCTTGCGATGGATCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTCTGCTGCTCTTCTTCATTACCCTCGACGGCAAGTATGACGGACCGTCATAGACACAACGGTCCATCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCGGGACGAACCATCATAGACACGACGGACCATCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTAGGCTGCCACCTACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGTATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTTGCACAAAAAGGCTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCCATACAACATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTAGCCATCAATCCCGATTAATCTCATCAAATCTATGCATGTTATCACTATTAGGCTTGAACTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTTCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAATTTGAATATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339540" ref_strand="+" ref_description="SGN-U339540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-58, score=228)">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="53653" stop="52310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53354" g_stop="52653" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U339540" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53354" e_stop="52653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTCAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCATCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCTATGTTGAAAAGATATCATGGGGATGGAAATTACATTATCCGTTGGGATTCAGTCTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATCTTAGACAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTAAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCTCCCTTGTTTTCCGTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTCAGTCGTTTGGAGCAACAGACTCCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCATGACGGACCGTCATGGGCACGACGGACCGTC</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="53115" stop="53892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53415" g_stop="53591" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53415" e_stop="53591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGATTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54594" stop="55906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54894" g_stop="55606" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54894" e_stop="55606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTTGCTAACCCAACAAAGCTCCTTATTTCCGATACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTCGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCGTCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTATTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55114" stop="56372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55414" g_stop="56072" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55414" e_stop="56072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTATTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57212" stop="55202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56912" g_stop="56726" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56725" i_stop="55980" i_length="746">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55979" g_stop="55466" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56912" e_stop="56726"/>
          <exon e_start="55979" e_stop="55466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGTGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTTAAGCCAGACGACTTCACTACGATATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGAGGCCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAATAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55183" stop="56540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55483" g_stop="56240" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55483" e_stop="56240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTATTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55410" stop="56552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55710" g_stop="56252" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55710" e_stop="56252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55586" stop="56516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55886" g_stop="56216" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55886" e_stop="56216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55793" stop="56953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56093" g_stop="56653" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56093" e_stop="56653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGG--ACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55797" stop="57834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56097" g_stop="57534" g_length="1438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1438</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56097" e_stop="57534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATATCGTAGTGAAGTCGTCTGGCTTAACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCACTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGT-CTGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGCGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTATCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCTGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGG-C-CTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57838" stop="56685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57538" g_stop="56985" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57538" e_stop="56985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGATACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCGCCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="+" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="56873" stop="57906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57173" g_stop="57605" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57173" e_stop="57605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTATCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCTGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58198" stop="57312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57898" g_stop="57612" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57898" e_stop="57612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCCTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACGACTATGCCAACAACAACACCGGCCAGACAAGAAACAACTGAGCCAGTCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG-AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332079" ref_strand="+" ref_description="SGN-U332079        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ggaagtgcagcagccttgaaaaatttgaagcgggtgcagaaagggtggggtcaaggaagtatatagtgtctataaactcccaaaaatggttttctggatgactaagaaactattaattggatgttcctttcttcgcgatcatggattttgcgttcagggaataggtagctaaacatgatcctcttaaaagctatacaatgcgtccagttaaaggaagcttatctagtttctaatcataaatgattattggggctgacatggatacaagcaaatggagatctgtgccaatacaggacaatgaatcactatttgcagtttataaaggttttcgttgtcactttttttgctactgctgcattcctggtctggccttgatataatattttggacctgcgtcagtttgattcttccttttttaactaaaaccccagagattgatttgatagaagatgcatacatgaaaattcaaatatttgatttcttttaccagctagataatatttttagctactggtgaaagaactcaagtgttagctaaccttcaccagctagctaatttttgatgtatgggatcttcaattttgaccggccaattcattttgagaagcactagtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="72324" stop="71107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72024" g_stop="71407" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U332079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72024" e_stop="71407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTGCAGCAGCCTTGAAAAATTTGAAGCGGGTGCAGAAAGGGTGGGGTCAAGGAAGTATATAGTGTCTATAAACTCCCAAAAATGGTTTTCTGGATGACTAAGAAACTATTAATTGGATGTTCCTTTCTTCGCGATCATGGATTTTGCGTTCAGGGAATAGGTAGCTAAACATGATCCTCTTAAAAGCTATACAATGCGTCCAGTTAAAGGAAGCTTATCTAGTTTCTAATCATAAATGATTATTGGGGCTGACATGGATACAAGCAAATGGAGATCTGTGCCAATACAGGACAATGAATCACTATTTGCAGTTTATAAAGGTTTTCGTTGTCACTTTTTTTGCTACTGCTGCATTCCTGGTCTGGCCTTGATATAATATTTTGGACCTGCGTCAGTTTGATTCTTCCTTTTTTAACTAAAACCCCAGAGATTGATTTGATAGAAGATGCATACATGAAAATTCAAATATTTGATTTCTTTTACCAGCTAGATAATATTTTTAGCTACTGGTGAAAGAACTCAAGTGTTAGCTAACCTTCACCAGCTAGCTAATTTTTGATGTATGGGATCTTCAATTTTGACCGGCCAATTCATTTTGAGAAGCACTAGTAGCA</genome_strand>
        <mrna_strand>GGAAGTGCAGCAGCCTTGAAAAATTTGAAGCGGGTGCAGAAAGGGTGGGGTCAAGGAAGTATATAGTGTCTATAAACTCCCAAAAATGGTTTTCTGGATGACTAAGAAACTATTAATTGGATGTTCCTTTCTTCGCGATCATGGATTTTGCGTTCAGGGAATAGGTAGCTAAACATGATCCTCTTAAAAGCTATACAATGCGTCCAGTTAAAGGAAGCTTATCTAGTTTCTAATCATAAATGATTATTGGGGCTGACATGGATACAAGCAAATGGAGATCTGTGCCAATACAGGACAATGAATCACTATTTGCAGTTTATAAAGGTTTTCGTTGTCACTTTTTTTGCTACTGCTGCATTCCTGGTCTGGCCTTGATATAATATTTTGGACCTGCGTCAGTTTGATTCTTCCTTTTTTAACTAAAACCCCAGAGATTGATTTGATAGAAGATGCATACATGAAAATTCAAATATTTGATTTCTTTTACCAGCTAGATAATATTTTTAGCTACTGGTGAAAGAACTCAAGTGTTAGCTAACCTTCACCAGCTAGCTAATTTTTGATGTATGGGATCTTCAATTTTGACCGGCCAATTCATTTTGAGAAGCACTAGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320130" ref_strand="+" ref_description="SGN-U320130        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr2:7469893-7473439 FORWARD | Aliases: F6P23.26, F6P23_26(evalue: 1e-58, score=223) genbank/nr: hypothetical(evalue: 8e-57, score=223)">
      <seq>tttttggactcttttgtggtcgagaggaagagaagcaagtgaaagatgaagagcagggattcgaaggtggtggcgtggcaactgttgagacgcactctctctacaccaaatcccccactccattcaattcttccccttacccgtatcctcctccgttaccatatgcttccacaaatacactcacttcactctttccttctatctctctcccctcatcttacttgtcaatacaccattgtcaaactcctagcttctcatggccacattcatgacgccatttttctctttcgttctactcgctcacatcacccaccgcccagactctcactctacaattttcttatatataaatctttcaaatttaattactccaattttatctcctggttgtatcaagacatgatttctgcttctgtttcccctgtaacttatacctttaatcttctcattcatggactctgtaattccgatcgcttacgagatgcccgccacctgtttgatcttatgcctcacaaagggtgtcaccccaatcacttcacttttgggattttgattcgtgcttattgcaaatttggactttcattacaaggtttaaaacttttggatacaatgaagatgatgaatgtttgtcctaatatcataatctacaacactctcgtagcaagtttctgcaggaaaggcgatgttgatgaggctgagaggttggttcagaggatgagggacgatggcctacttcctgatgttgttaacttcaattctagtatctcagctctgtgctactccggcaagattcttgaagcttccagaatttttcagagatatgcaaatagatgaggtattcggattgccaaggcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75831" stop="74374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75531" g_stop="74674" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U320130" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75531" e_stop="74674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGACTCTTTTGTGGTCGAGAGGAAGAGAAGCAAGTGAAAGATGAAGAGCAGGGATTCGAAGGTGGTGGCGTGGCAACTGTTGAGACGCACTCTCTCTACACCAAATCCCCCACTCCATTCAATTCTTCCCCTTACCCGTATCCTCCTCCGTTACCATATGCTTCCACAAATACACTCACTTCACTCTTTCCTTCTATCTCTCTCCCCTCATCTTACTTGTCAATACACCATTGTCAAACTCCTAGCTTCTCATGGCCACATTCACGACGCCATTTTTCTCTTTCGTTCTACTCGCTCACATCACCCACCGCCCAGACTCTCACTCTACAATTTTCTTATATATAAATCTTTCAAATTTAATTACTCCAATTTTATCTCCTGGTTGTATCAAGACATGATTTCTGCTTCTGTTTCCCCTGTAACTTATACCTTTAATCTTCTCATTCATGGACTCTGTAATTCCGATCGCTTACGAGATGCCCGCCACCTGTTTGATCTTATGCCTCACAAAGGGTGTCACCCCAATCACTTCACTTTTGGGATTTTGATTCGTGCTTATTGCAAATTTGGACTTTCATTACAAGGTTTAAAACTTTTGGATACAATGAAGATGATGAATGTTTGTCCTAATATCATAATCTACAACACTCTCGTAGCAAGTTTCTGCAGGAAAGGCGATGTTGATGAGGCTGAGAGGTTGGTTCAGAGGATGAGGGACGATGGCCTACTTCCTGATGTTGTTACCTTCAATTCTAGGATCTCAGCTCTTTGCAACTCCGGCAAGATTCTTGAAGCTTCCAGAA-TTTTCAGAGATATGCAAATAGATGAGGTATTCGGATTGCCAAGGCCTAAT</genome_strand>
        <mrna_strand>TTTTTGGACTCTTTTGTGGTCGAGAGGAAGAGAAGCAAGTGAAAGATGAAGAGCAGGGATTCGAAGGTGGTGGCGTGGCAACTGTTGAGACGCACTCTCTCTACACCAAATCCCCCACTCCATTCAATTCTTCCCCTTACCCGTATCCTCCTCCGTTACCATATGCTTCCACAAATACACTCACTTCACTCTTTCCTTCTATCTCTCTCCCCTCATCTTACTTGTCAATACACCATTGTCAAACTCCTAGCTTCTCATGGCCACATTCATGACGCCATTTTTCTCTTTCGTTCTACTCGCTCACATCACCCACCGCCCAGACTCTCACTCTACAATTTTCTTATATATAAATCTTTCAAATTTAATTACTCCAATTTTATCTCCTGGTTGTATCAAGACATGATTTCTGCTTCTGTTTCCCCTGTAACTTATACCTTTAATCTTCTCATTCATGGACTCTGTAATTCCGATCGCTTACGAGATGCCCGCCACCTGTTTGATCTTATGCCTCACAAAGGGTGTCACCCCAATCACTTCACTTTTGGGATTTTGATTCGTGCTTATTGCAAATTTGGACTTTCATTACAAGGTTTAAAACTTTTGGATACAATGAAGATGATGAATGTTTGTCCTAATATCATAATCTACAACACTCTCGTAGCAAGTTTCTGCAGGAAAGGCGATGTTGATGAGGCTGAGAGGTTGGTTCAGAGGATGAGGGACGATGGCCTACTTCCTGATGTTGTTAACTTCAATTCTAGTATCTCAGCTCTGTGCTACTCCGGCAAGATTCTTGAAGCTTCCAGAATTTTTCAGAGATATGCAAATAGATGAGGTATTCGGATTGCCAAGGCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335282" ref_strand="+" ref_description="SGN-U335282        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 4e-05, score=51.2)">
      <seq>cccgcctctctctcttttcctcatctcttctcccctcgcccggctttcctcttctcctcctccaaacggatcaccggcgagcagcagccccgatgactcctctctctccctatcatcttcctcttctcctcttccctcgacccctctctctttccccctcctctcttcattcttcctctatccccctctcgtatcttctccacagcgaactccggcgaggatcaatagccagccatcggcaagcatccgacagcatcaccagcagccacaactctggcataaccccaggcagccagcagctcggctagagagcgataggaacaacatcaactgctcaagctgaggctcaaatgcttgttatttcgtaccaaatggatctgtgcaggcaactcaggaagctcaacatataataaagttgatacaacattatattgcttctttcatcaaagttggagataagaatattatgtctgggctcccgatcgtgaggaagagttcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0075C18-FGaN5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0075C18.1" temp_strand="-" temp_description="C12HBa0075C18.1  AC216295.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0075C18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115736" stop="114138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115466" g_stop="115082" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115081" i_stop="114525" i_length="557">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114524" g_stop="114450" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0075C18.1" gen_strand="-" ref_id="SGN-U335282" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0075C18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115466" e_stop="115082"/>
          <exon e_start="114524" e_stop="114450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGCCTCTCTCTCTTTTCCTCATCTCTTCTCCCCTCGCCCCGCTTTCCTCTTCTCCTCCTCCAAACGGATCACCGGCGAGCAGCAGCCCCGATGACTTCTCTCTCTCCCTATCATCTTCCTCTTCTCCTCTTCCCTCGACCCCTCTCTCTTTCCCCCTCCTCTCTTCATTCTTCCTCTATCCCCCTCTCGTATCTTCTCCACAGCGAACTCCGGCGAGGATCAATAGCCAGCCATCGGCAAGCATCCGACAGCATCACCAGCAGCCACAACTCTGGCATAACCCCAGGCAGCCAGCAGCTCGGCTAGAGAGCGATAGGAACAACATCAACTGCTCAAGCTGAGGCTCAAATGCTTGTTATTTCGTACCAAATGGATCTGTGCAGGTTTGTTTTTCCTTTTTATTATTACCTCATAATTTTCTTAATGATGTTCATAAGTTATTAACAGTTTGTTACCCCTTTTTTATTATTACCTCATAATTTTTTGTATTGATGTTCATCAGTCTTTAGGACCACCTAGAGGAAATAGTTTTCTGACTTTGGGAGTTGCTACTTTCTGCTTGCATTTTTGTATGCACATTTCCCTTAAAAGATTTTTATTTACGTGCTTGAAGTGTTATTAGAATCTCTAGTTGAAAACATATTTCCAATTTTATTTATTGAAGTACTTGAAGATATTTTTGTTGTTAATAAATGGTTTCATCATAAAGAAAAAATCATACATCCTCGTGTTTGGGGTGAATGAGTAGGTTGGTGGGAATCCATACTTGAGTTGAGCTATTGATGTTAGTGAATCAAATCGAACTATTTTGAAATAAAAATACAAATGACTTAAGAGTATGACTTAATGCTCTACTTGATCTTCTTGTATGTAACATGTGCGTGTATAAGTTCAAACTTTATTTTTTTAGTGTTAACTTTTTTACCTCTTTTCGTGCTAGGCAACTCAGGAAGCTCAACATATAATAAAGTTGATACAACATTATATTGCTTCTTTCATCAAAGTTGGAGATAAG</genome_strand>
        <mrna_strand>CCCGCCTCTCTCTCTTTTCCTCATCTCTTCTCCCCTCGCCCGGCTTTCCTCTTCTCCTCCTCCAAACGGATCACCGGCGAGCAGCAGCCCCGATGACTCCTCTCTCTCCCTATCATCTTCCTCTTCTCCTCTTCCCTCGACCCCTCTCTCTTTCCCCCTCCTCTCTTCATTCTTCCTCTATCCCCCTCTCGTATCTTCTCCACAGCGAACTCCGGCGAGGATCAATAGCCAGCCATCGGCAAGCATCCGACAGCATCACCAGCAGCCACAACTCTGGCATAACCCCAGGCAGCCAGCAGCTCGGCTAGAGAGCGATAGGAACAACATCAACTGCTCAAGCTGAGGCTCAAATGCTTGTTATTTCGTACCAAATGGATCTGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAGGAAGCTCAACATATAATAAAGTTGATACAACATTATATTGCTTCTTTCATCAAAGTTGGAGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6735" PGL_stop="7324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6735" e_stop="7324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="6735" e_stop="7324" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6735" stop="7324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTTCCTATATCAGACTTCCTAGTACTCCAATCTTTGTTATTTCGGGAGATTTTCTCTAATTTTTCAGCAATCTCAACATAAGGGCATTCTCCATAAGATCCACCTGCTATAGTGTCCAACATCACTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGATTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAATTGACTCTCCTGGTAGTGCCACAAAGTTGTTCAGTTTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTAAGAAGACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGTATGGAAACTCAGTGAACCATATAGCAGCCTCCCCCGTCAGTGAGAGAGGAAACACTTTGAGACCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTATCTTAGCTATATGGGCATATGGATCCTCAGAAAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  I  S  D  F  L  V  L  Q  S  L  L  F  R  E  I  F  S  N  F  S  A  I  S  T  *  G  H  S  P  *  D  P  P  A  I  V  S  N  I  T  L  L  L  S  S  C  P  R  *  K  Y  S  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  Q  E  L  L  I  D  S  P  G  S  A  T  K  L  F  S  L  S  L  W  F  S  F  L  E  T  G  *  *  S  A  K  K  T  S  L  N  W  F  Q  V  K  I  E  L  Y  G  N  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  R  P  I  T  S  R  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  I  L  A  I  W  A  Y  G  S  S  E  S  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  F  L  Y  Q  T  S  *  Y  S  N  L  C  Y  F  G  R  F  S  L  I  F  Q  Q  S  Q  H  K  G  I  L  H  K  I  H  L  L  *  C  P  T  S  L  C  C  Y  H  P  V  P  D  R  S  I  P  S  V  I  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  V  C  L  C  G  L  V  S  W  R  P  D  S  R  V  L  R  R  H  L  L  I  G  S  K  *  R  L  S  C  M  E  T  Q  *  T  I  *  Q  P  P  P  S  V  R  E  E  T  L  *  D  L  L  H  L  D  P  N  Q  A  S  P  H  N  F  Y  T  L  P  L  S  *  L  Y  G  H  M  D  P  Q  K  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  S  Y  I  R  L  P  S  T  P  I  F  V  I  S  G  D  F  L  *  F  F  S  N  L  N  I  R  A  F  S  I  R  S  T  C  Y  S  V  Q  H  H  F  V  V  I  I  L  S  P  I  E  V  F  L  Q  *  F  I  I  Y  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  Q  F  V  F  V  V  *  F  L  G  D  R  I  V  E  C  *  E  D  I  S  *  L  V  P  S  E  D  *  V  V  W  K  L  S  E  P  Y  S  S  L  P  R  Q  *  E  R  K  H  F  E  T  Y  Y  I  *  I  Q  I  R  P  P  H  T  T  F  T  H  C  P  Y  L  S  Y  M  G  I  W  I  L  R  K  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7062" stop="7322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKTSLNWFQVKIELYGNSVNHIAASPVSERGNTLRPITSRSKSGLPTQLLHTALILAIWAYGSSESSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26825" PGL_stop="15185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26825" e_stop="26604"/>
            <exon e_start="15678" e_stop="15185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.000" e_score="0.874"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="26825" e_stop="26604" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26603" i_stop="15679" i_length="10925"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="15678" e_stop="15185" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26825" stop="26604"/>
              <exon start="15678" stop="15185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGGTCTCCATTCCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATGGACACGACGGACCGTCATGGACTCCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCATGACGGACCTTCACAAGCTCC : GTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGTATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTTGCACAAAAAGGCTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCCATACAACATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTAGCCATCAATCCCGATTAATCTCATCAAATCTATGCATGTTATCACTATTAGGCTTGAACTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTTCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAATTTGAATATAAGGATTAC</gDNA_template>
            <first_frame> Q  G  S  P  F  Q  N  T  *  T  L  G  I  W  V  L  G  L  L  L  *  T  S  *  R  T  C  R  T  D  R  H  G  H  D  G  P  S  W  T  P  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  D  T  Y  G  P  S  Q  A  *  R  T  F  T  S  S  :  V  G  G  L  F  C  I  S  S  L  K  I  S  V  F  S  F  G  Q  I  S  C  K  I  K  R  N  L  Y  K  N  L  H  K  K  A  F  G  H  T  K  H  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  H  T  T  S  L  Y  N  S  I  H  V  S  S  F  A  I  I  *  P  S  I  P  I  N  L  I  K  S  M  H  V  I  T  I  R  L  E  L  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  *  G  A  N  N  F  G  I  A  T  S  V  L  T  S  K  Q  N  P  H  F  S  H  N  D  F  N  L  N  I  R  I   </first_frame>
            <second_frame>  K  G  L  H  S  K  T  L  E  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  V  M  D  T  T  D  R  H  G  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  T  P  T  D  R  H  K  H  D  G  P  S  Q  A  P :   *  V  V  S  S  A  F  L  R  S  K  S  P  Y  S  A  L  D  R  F  P  A  K  *  K  E  T  Y  I  K  I  C  T  K  R  L  L  D  T  L  N  I  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  H  L  C  T  I  V  S  M  F  H  P  L  Q  S  F  S  H  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  S  V  L  Q  L  V  S  S  L  Q  N  K  I  L  I  F  H  T  M  I  S  I  *  I  *  G  L  </second_frame>
            <third_frame>   R  V  S  I  P  K  H  L  N  S  W  N  M  G  T  G  T  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  W  T  R  R  T  V  M  D  S  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  *  H  L  R  T  V  T  S  M  T  D  L  H  K  L   : R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  K  K  L  I  *  K  F  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  P  Y  N  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  T  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  L  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15533" stop="15198"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRETTVYQHPQLKFVVCPQATHYDSIQHLCTIVSMFHPLQSFSHQSRLISSNLCMLSLLGLNYVGSEHDTDSPCTNTYPLQFLTEVLTISVLQLVSSLQNKILIFHTMISI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26824" stop="26604"/>
                    <exon start="15678" stop="15675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGLHSKTLELLEYGYWDYFSELHDEPAGRTVMDTTDRHGLRNPTLGQTSPSSFSSCTTLTPTDRHKHDGPSQAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="53354" PGL_stop="52653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53354" e_stop="52653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="53354" e_stop="52653" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53354" stop="52653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTCAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCATCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCTATGTTGAAAAGATATCATGGGGATGGAAATTACATTATCCGTTGGGATTCAGTCTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATCTTAGACAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTAAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCTCCCTTGTTTTCCGTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTCAGTCGTTTGGAGCAACAGACTCCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCATGACGGACCGTCATGGGCACGACGGACCGTC</gDNA_template>
            <first_frame> G  F  D  R  E  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  Q  R  L  R  V  H  G  G  *  T  S  L  V  E  S  F  I  N  E  R  G  D  A  V  W  *  K  G  *  A  K  S  K  V  H  W  T  I  *  S  T  *  A  S  R  R  G  G  L  *  V  S  L  A  S  R  A  V  R  S  A  S  G  I  P  C  V  Y  V  E  K  I  S  W  G  W  K  L  H  Y  P  L  G  F  S  L  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  L  R  Q  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  G  *  R  S  H  L  G  E  G  G  R  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  V  L  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  Q  S  F  G  A  T  D  S  N  S  G  K  T  G  R  S  D  G  P  H  D  G  P  S  W  A  R  R  T  V </first_frame>
            <second_frame>  D  S  I  E  K  V  K  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  S  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  K  E  A  T  W  E  K  E  A  D  M  Q  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  L  P  C  F  P  S  C  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  L  E  Q  Q  T  P  I  L  E  K  L  A  E  A  T  D  P  M  T  D  R  H  G  H  D  G  P   </second_frame>
            <third_frame>   I  R  *  R  K  *  S  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  S  E  T  *  S  S  W  R  V  N  K  S  C  *  K  F  H  Q  *  K  G  *  C  G  L  V  K  G  V  S  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  *  E  R  W  L  M  S  *  P  C  L  Q  G  C  P  E  C  I  R  Y  S  M  C  L  C  *  K  D  I  M  G  M  E  I  T  L  S  V  G  I  Q  S  C  L  M  R  T  C  L  M  R  R  S  L  L  L  S  *  T  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  R  L  K  K  P  L  G  R  R  R  Q  I  C  K  K  D  T  H  I  C  L  Q  I  Q  V  L  L  F  S  L  V  F  R  L  V  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  S  V  V  W  S  N  R  L  Q  F  W  K  N  W  Q  K  R  R  T  P  *  R  T  V  M  G  T  T  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53353" stop="52769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIEKVKSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSSMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVKEATWEKEADMQERYPHLFTDSGTPFLPCFPSCDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53415" PGL_stop="53591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53415" e_stop="53591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="53415" e_stop="53591" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53415" stop="53591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGATTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  I  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0075C18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54894" PGL_stop="57605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54894" e_stop="57605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="54894" e_stop="57605" e_length="2712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54894" stop="55606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55414" stop="56072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55483" stop="56240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55710" stop="56252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55886" stop="56216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56093" stop="56653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56097" stop="57534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57173" stop="57605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTTGCTAACCCAACAAAGCTCCTTATTTCCGATACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTCGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCGTCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTATTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATATCGTAGTGAAGTCGTCTGGCTTAACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCACTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGCGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTATCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCTGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  C  *  P  N  K  A  P  Y  F  R  Y  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  K  I  H  H  H  S  I  L  R  N  H  V  S  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  R  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  V  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  K  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  Y  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  D  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  S  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  I  V  V  K  S  S  G  L  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  H  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  A  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  Y  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  C  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  R  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  F  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  I  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  I  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  A  S  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  K  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  T  F  L  M  S  I  S  *  *  S  R  L  A  *  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  F  T  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  R  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  I  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  L  L  T  Q  Q  S  S  L  F  P  I  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  V  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  S  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  R  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  K  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  S  K  W  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  *  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  L  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  Y  R  S  E  V  V  W  L  N  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  L  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  S  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  L  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57127" stop="57381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLITCHYRPSSQTWKRAYFQWNIHAGSHSIRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56330" stop="56581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLQFAHHLGRFGDHHYLDHHVLQNNGLSTMTTSTSSYWGSITLSGTIFPNMSNLPTSITLSGVKHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55621" stop="55866"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55158" stop="55397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIVNKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIHCPYFQLMITGSQVNLRKDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57382" stop="57603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFSFPILPFSYYFLSRWRSHCPSIRWTRCSSSSPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55553" stop="55768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCLTTLEVGLLTLLTPREPFYKGVSKWGEYPVQGQYRNQYPYLVAYQEDLQGTHPKTRGLPKPTQSKVLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55599" stop="55799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKVNTEINIPIWWHTRKICREHIQKLADYRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57407" stop="57604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGISSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGVRPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="9"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55090" stop="55287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="10"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56637" stop="56831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDIVVKSSGLTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56912" PGL_stop="55466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56912" e_stop="56726"/>
            <exon e_start="55979" e_stop="55466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="56912" e_stop="56726" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56725" i_stop="55980" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="55979" e_stop="55466" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56912" stop="56726"/>
              <exon start="55979" stop="55466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGTGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAATAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  V  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  S  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  P  R  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  D  T  P  L  *  N  G  S  R  G  V  N  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  *  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  I  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  Q  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  *  S  A  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  P  F  R  Y  P  L  I  E  W  L  P  R  S  *  *  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56821" stop="56726"/>
                    <exon start="55979" stop="55467"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRFVKGLRSELRISALQIAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELIELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57538" PGL_stop="56985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57538" e_stop="56985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="57538" e_stop="56985" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57538" stop="56985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGATACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCGCCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  Q  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  A  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  R  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  D  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  I  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  R  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57537" stop="56986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVQNEEMPPQPTPEMINQVLAYLSRLSDQGQTPPVFSAPAPQAPEVQHADTMAPRMDVPLEIGTFPRLTTGPIMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHIECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="57898" PGL_stop="57612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57898" e_stop="57612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="57898" e_stop="57612" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57898" stop="57612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCCTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACGACTATGCCAACAACAACACCGGCCAGACAAGAAACAACTGAGCCAGTCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  N  F  T  P  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  V  D  G  *  N  *  S  N  D  Y  A  N  N  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  M  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  L  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  *  M  V  R  T  R  A  T  T  M  P  T  T  T  P  A  R  Q  E  T  T  E  P  V  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  W  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  C  Q  Q  Q  H  R  P  D  K  K  Q  L  S  Q  S  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0075C18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="72024" PGL_stop="71407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72024" e_stop="71407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72024" e_stop="71407" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72024" stop="71407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTGCAGCAGCCTTGAAAAATTTGAAGCGGGTGCAGAAAGGGTGGGGTCAAGGAAGTATATAGTGTCTATAAACTCCCAAAAATGGTTTTCTGGATGACTAAGAAACTATTAATTGGATGTTCCTTTCTTCGCGATCATGGATTTTGCGTTCAGGGAATAGGTAGCTAAACATGATCCTCTTAAAAGCTATACAATGCGTCCAGTTAAAGGAAGCTTATCTAGTTTCTAATCATAAATGATTATTGGGGCTGACATGGATACAAGCAAATGGAGATCTGTGCCAATACAGGACAATGAATCACTATTTGCAGTTTATAAAGGTTTTCGTTGTCACTTTTTTTGCTACTGCTGCATTCCTGGTCTGGCCTTGATATAATATTTTGGACCTGCGTCAGTTTGATTCTTCCTTTTTTAACTAAAACCCCAGAGATTGATTTGATAGAAGATGCATACATGAAAATTCAAATATTTGATTTCTTTTACCAGCTAGATAATATTTTTAGCTACTGGTGAAAGAACTCAAGTGTTAGCTAACCTTCACCAGCTAGCTAATTTTTGATGTATGGGATCTTCAATTTTGACCGGCCAATTCATTTTGAGAAGCACTAGTAGCA</gDNA_template>
            <first_frame> G  S  A  A  A  L  K  N  L  K  R  V  Q  K  G  W  G  Q  G  S  I  *  C  L  *  T  P  K  N  G  F  L  D  D  *  E  T  I  N  W  M  F  L  S  S  R  S  W  I  L  R  S  G  N  R  *  L  N  M  I  L  L  K  A  I  Q  C  V  Q  L  K  E  A  Y  L  V  S  N  H  K  *  L  L  G  L  T  W  I  Q  A  N  G  D  L  C  Q  Y  R  T  M  N  H  Y  L  Q  F  I  K  V  F  V  V  T  F  F  A  T  A  A  F  L  V  W  P  *  Y  N  I  L  D  L  R  Q  F  D  S  S  F  F  N  *  N  P  R  D  *  F  D  R  R  C  I  H  E  N  S  N  I  *  F  L  L  P  A  R  *  Y  F  *  L  L  V  K  E  L  K  C  *  L  T  F  T  S  *  L  I  F  D  V  W  D  L  Q  F  *  P  A  N  S  F  *  E  A  L  V  A </first_frame>
            <second_frame>  E  V  Q  Q  P  *  K  I  *  S  G  C  R  K  G  G  V  K  E  V  Y  S  V  Y  K  L  P  K  M  V  F  W  M  T  K  K  L  L  I  G  C  S  F  L  R  D  H  G  F  C  V  Q  G  I  G  S  *  T  *  S  S  *  K  L  Y  N  A  S  S  *  R  K  L  I  *  F  L  I  I  N  D  Y  W  G  *  H  G  Y  K  Q  M  E  I  C  A  N  T  G  Q  *  I  T  I  C  S  L  *  R  F  S  L  S  L  F  L  L  L  L  H  S  W  S  G  L  D  I  I  F  W  T  C  V  S  L  I  L  P  F  L  T  K  T  P  E  I  D  L  I  E  D  A  Y  M  K  I  Q  I  F  D  F  F  Y  Q  L  D  N  I  F  S  Y  W  *  K  N  S  S  V  S  *  P  S  P  A  S  *  F  L  M  Y  G  I  F  N  F  D  R  P  I  H  F  E  K  H  *  *   </second_frame>
            <third_frame>   K  C  S  S  L  E  K  F  E  A  G  A  E  R  V  G  S  R  K  Y  I  V  S  I  N  S  Q  K  W  F  S  G  *  L  R  N  Y  *  L  D  V  P  F  F  A  I  M  D  F  A  F  R  E  *  V  A  K  H  D  P  L  K  S  Y  T  M  R  P  V  K  G  S  L  S  S  F  *  S  *  M  I  I  G  A  D  M  D  T  S  K  W  R  S  V  P  I  Q  D  N  E  S  L  F  A  V  Y  K  G  F  R  C  H  F  F  C  Y  C  C  I  P  G  L  A  L  I  *  Y  F  G  P  A  S  V  *  F  F  L  F  *  L  K  P  Q  R  L  I  *  *  K  M  H  T  *  K  F  K  Y  L  I  S  F  T  S  *  I  I  F  L  A  T  G  E  R  T  Q  V  L  A  N  L  H  Q  L  A  N  F  *  C  M  G  S  S  I  L  T  G  Q  F  I  L  R  S  T  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71702" stop="71508"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSLSLFLLLLHSWSGLDIIFWTCVSLILPFLTKTPEIDLIEDAYMKIQIFDFFYQLDNIFSYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75531" PGL_stop="74674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75531" e_stop="74674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="75531" e_stop="74674" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75531" stop="74674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGGACTCTTTTGTGGTCGAGAGGAAGAGAAGCAAGTGAAAGATGAAGAGCAGGGATTCGAAGGTGGTGGCGTGGCAACTGTTGAGACGCACTCTCTCTACACCAAATCCCCCACTCCATTCAATTCTTCCCCTTACCCGTATCCTCCTCCGTTACCATATGCTTCCACAAATACACTCACTTCACTCTTTCCTTCTATCTCTCTCCCCTCATCTTACTTGTCAATACACCATTGTCAAACTCCTAGCTTCTCATGGCCACATTCACGACGCCATTTTTCTCTTTCGTTCTACTCGCTCACATCACCCACCGCCCAGACTCTCACTCTACAATTTTCTTATATATAAATCTTTCAAATTTAATTACTCCAATTTTATCTCCTGGTTGTATCAAGACATGATTTCTGCTTCTGTTTCCCCTGTAACTTATACCTTTAATCTTCTCATTCATGGACTCTGTAATTCCGATCGCTTACGAGATGCCCGCCACCTGTTTGATCTTATGCCTCACAAAGGGTGTCACCCCAATCACTTCACTTTTGGGATTTTGATTCGTGCTTATTGCAAATTTGGACTTTCATTACAAGGTTTAAAACTTTTGGATACAATGAAGATGATGAATGTTTGTCCTAATATCATAATCTACAACACTCTCGTAGCAAGTTTCTGCAGGAAAGGCGATGTTGATGAGGCTGAGAGGTTGGTTCAGAGGATGAGGGACGATGGCCTACTTCCTGATGTTGTTACCTTCAATTCTAGGATCTCAGCTCTTTGCAACTCCGGCAAGATTCTTGAAGCTTCCAGAATTTTCAGAGATATGCAAATAGATGAGGTATTCGGATTGCCAAGGCCTAAT</gDNA_template>
            <first_frame> F  L  D  S  F  V  V  E  R  K  R  S  K  *  K  M  K  S  R  D  S  K  V  V  A  W  Q  L  L  R  R  T  L  S  T  P  N  P  P  L  H  S  I  L  P  L  T  R  I  L  L  R  Y  H  M  L  P  Q  I  H  S  L  H  S  F  L  L  S  L  S  P  H  L  T  C  Q  Y  T  I  V  K  L  L  A  S  H  G  H  I  H  D  A  I  F  L  F  R  S  T  R  S  H  H  P  P  P  R  L  S  L  Y  N  F  L  I  Y  K  S  F  K  F  N  Y  S  N  F  I  S  W  L  Y  Q  D  M  I  S  A  S  V  S  P  V  T  Y  T  F  N  L  L  I  H  G  L  C  N  S  D  R  L  R  D  A  R  H  L  F  D  L  M  P  H  K  G  C  H  P  N  H  F  T  F  G  I  L  I  R  A  Y  C  K  F  G  L  S  L  Q  G  L  K  L  L  D  T  M  K  M  M  N  V  C  P  N  I  I  I  Y  N  T  L  V  A  S  F  C  R  K  G  D  V  D  E  A  E  R  L  V  Q  R  M  R  D  D  G  L  L  P  D  V  V  T  F  N  S  R  I  S  A  L  C  N  S  G  K  I  L  E  A  S  R  I  F  R  D  M  Q  I  D  E  V  F  G  L  P  R  P  N </first_frame>
            <second_frame>  F  W  T  L  L  W  S  R  G  R  E  A  S  E  R  *  R  A  G  I  R  R  W  W  R  G  N  C  *  D  A  L  S  L  H  Q  I  P  H  S  I  Q  F  F  P  L  P  V  S  S  S  V  T  I  C  F  H  K  Y  T  H  F  T  L  S  F  Y  L  S  P  L  I  L  L  V  N  T  P  L  S  N  S  *  L  L  M  A  T  F  T  T  P  F  F  S  F  V  L  L  A  H  I  T  H  R  P  D  S  H  S  T  I  F  L  Y  I  N  L  S  N  L  I  T  P  I  L  S  P  G  C  I  K  T  *  F  L  L  L  F  P  L  *  L  I  P  L  I  F  S  F  M  D  S  V  I  P  I  A  Y  E  M  P  A  T  C  L  I  L  C  L  T  K  G  V  T  P  I  T  S  L  L  G  F  *  F  V  L  I  A  N  L  D  F  H  Y  K  V  *  N  F  W  I  Q  *  R  *  *  M  F  V  L  I  S  *  S  T  T  L  S  *  Q  V  S  A  G  K  A  M  L  M  R  L  R  G  W  F  R  G  *  G  T  M  A  Y  F  L  M  L  L  P  S  I  L  G  S  Q  L  F  A  T  P  A  R  F  L  K  L  P  E  F  S  E  I  C  K  *  M  R  Y  S  D  C  Q  G  L   </second_frame>
            <third_frame>   F  G  L  F  C  G  R  E  E  E  K  Q  V  K  D  E  E  Q  G  F  E  G  G  G  V  A  T  V  E  T  H  S  L  Y  T  K  S  P  T  P  F  N  S  S  P  Y  P  Y  P  P  P  L  P  Y  A  S  T  N  T  L  T  S  L  F  P  S  I  S  L  P  S  S  Y  L  S  I  H  H  C  Q  T  P  S  F  S  W  P  H  S  R  R  H  F  S  L  S  F  Y  S  L  T  S  P  T  A  Q  T  L  T  L  Q  F  S  Y  I  *  I  F  Q  I  *  L  L  Q  F  Y  L  L  V  V  S  R  H  D  F  C  F  C  F  P  C  N  L  Y  L  *  S  S  H  S  W  T  L  *  F  R  S  L  T  R  C  P  P  P  V  *  S  Y  A  S  Q  R  V  S  P  Q  S  L  H  F  W  D  F  D  S  C  L  L  Q  I  W  T  F  I  T  R  F  K  T  F  G  Y  N  E  D  D  E  C  L  S  *  Y  H  N  L  Q  H  S  R  S  K  F  L  Q  E  R  R  C  *  *  G  *  E  V  G  S  E  D  E  G  R  W  P  T  S  *  C  C  Y  L  Q  F  *  D  L  S  S  L  Q  L  R  Q  D  S  *  S  F  Q  N  F  Q  R  Y  A  N  R  *  G  I  R  I  A  K  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75489" stop="74674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKSRDSKVVAWQLLRRTLSTPNPPLHSILPLTRILLRYHMLPQIHSLHSFLLSLSPHLTCQYTIVKLLASHGHIHDAIFLFRSTRSHHPPPRLSLYNFLIYKSFKFNYSNFISWLYQDMISASVSPVTYTFNLLIHGLCNSDRLRDARHLFDLMPHKGCHPNHFTFGILIRAYCKFGLSLQGLKLLDTMKMMNVCPNIIIYNTLVASFCRKGDVDEAERLVQRMRDDGLLPDVVTFNSRISALCNSGKILEASRIFRDMQIDEVFGLPRPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="115466" PGL_stop="114450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115466" e_stop="115082"/>
            <exon e_start="114524" e_stop="114450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="115466" e_stop="115082" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="115081" i_stop="114525" i_length="557"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114524" e_stop="114450" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115466" stop="115082"/>
              <exon start="114524" stop="114450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGCCTCTCTCTCTTTTCCTCATCTCTTCTCCCCTCGCCCCGCTTTCCTCTTCTCCTCCTCCAAACGGATCACCGGCGAGCAGCAGCCCCGATGACTTCTCTCTCTCCCTATCATCTTCCTCTTCTCCTCTTCCCTCGACCCCTCTCTCTTTCCCCCTCCTCTCTTCATTCTTCCTCTATCCCCCTCTCGTATCTTCTCCACAGCGAACTCCGGCGAGGATCAATAGCCAGCCATCGGCAAGCATCCGACAGCATCACCAGCAGCCACAACTCTGGCATAACCCCAGGCAGCCAGCAGCTCGGCTAGAGAGCGATAGGAACAACATCAACTGCTCAAGCTGAGGCTCAAATGCTTGTTATTTCGTACCAAATGGATCTGTGCAG : GCAACTCAGGAAGCTCAACATATAATAAAGTTGATACAACATTATATTGCTTCTTTCATCAAAGTTGGAGATAAG</gDNA_template>
            <first_frame> P  A  S  L  S  F  P  H  L  F  S  P  R  P  A  F  L  F  S  S  S  K  R  I  T  G  E  Q  Q  P  R  *  L  L  S  L  P  I  I  F  L  F  S  S  S  L  D  P  S  L  F  P  P  P  L  F  I  L  P  L  S  P  S  R  I  F  S  T  A  N  S  G  E  D  Q  *  P  A  I  G  K  H  P  T  A  S  P  A  A  T  T  L  A  *  P  Q  A  A  S  S  S  A  R  E  R  *  E  Q  H  Q  L  L  K  L  R  L  K  C  L  L  F  R  T  K  W  I  C  A   : G  N  S  G  S  S  T  Y  N  K  V  D  T  T  L  Y  C  F  F  H  Q  S  W  R  *  </first_frame>
            <second_frame>  P  P  L  S  L  F  L  I  S  S  P  L  A  P  L  S  S  S  P  P  P  N  G  S  P  A  S  S  S  P  D  D  F  S  L  S  L  S  S  S  S  S  P  L  P  S  T  P  L  S  F  P  L  L  S  S  F  F  L  Y  P  P  L  V  S  S  P  Q  R  T  P  A  R  I  N  S  Q  P  S  A  S  I  R  Q  H  H  Q  Q  P  Q  L  W  H  N  P  R  Q  P  A  A  R  L  E  S  D  R  N  N  I  N  C  S  S  *  G  S  N  A  C  Y  F  V  P  N  G  S  V  Q  :  A  T  Q  E  A  Q  H  I  I  K  L  I  Q  H  Y  I  A  S  F  I  K  V  G  D  K </second_frame>
            <third_frame>   R  L  S  L  F  S  S  S  L  L  P  S  P  R  F  P  L  L  L  L  Q  T  D  H  R  R  A  A  A  P  M  T  S  L  S  P  Y  H  L  P  L  L  L  F  P  R  P  L  S  L  S  P  S  S  L  H  S  S  S  I  P  L  S  Y  L  L  H  S  E  L  R  R  G  S  I  A  S  H  R  Q  A  S  D  S  I  T  S  S  H  N  S  G  I  T  P  G  S  Q  Q  L  G  *  R  A  I  G  T  T  S  T  A  Q  A  E  A  Q  M  L  V  I  S  Y  Q  M  D  L  C  R :   Q  L  R  K  L  N  I  *  *  S  *  Y  N  I  I  L  L  L  S  S  K  L  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115465" stop="115124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPLSLFLISSPLAPLSSSPPPNGSPASSSPDDFSLSLSSSSSPLPSTPLSFPLLSSFFLYPPLVSSPQRTPARINSQPSASIRQHHQQPQLWHNPRQPAARLESDRNNINCSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0075C18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115464" stop="115159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSLFSSSLLPSPRFPLLLLQTDHRRAAAPMTSLSPYHLPLLLFPRPLSLSPSSLHSSSIPLSYLLHSELRRGSIASHRQASDSITSSHNSGITPGSQQLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 122 chains have been computed
$ 
$ memory statistics:
$ 39232 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2179 bytes was the average size of a spliced alignment
$ 17384 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1580 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 155 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 01:15:26
-->
