<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 14:42:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306837" ref_strand="+" ref_description="SGN-E306837 [cLEY-11-H15]">
      <seq>ttggtccaagtcaatgaacagctacccttgtggagtttgtctgttggttgataagaaggaatcaaagaaaccccaggtgaaaattggggcaaaattgagcaggaggaagaagaaggataatgggtacccctaaagaagaggcaacagatgaagttttctctgagaatttagagcagaagccggaccctgaccctgcaaccagcaaattagagttaaaagctgatgttgtttctggtgaactgcagaagaggctgagtcaatgtgataaagagattaatgtgtcacaatccaatcaagaagctatttctctttctggagtacaagataaccagtcagaaaatgtgcggaagcaacaggatgttaagagtgaggctgatgcatctggatctagtcaactgtctagtttactcaaaggactcagatgcaaaatcatgtggatcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3718" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3418" g_stop="3304" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3303" i_stop="375" i_length="2929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.388" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="374" g_stop="46" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="445" r_length="330" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E306837" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3418" e_stop="3304"/>
          <exon e_start="374" e_stop="46"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCCAAGTCAATGAACAGCTACCCTTTTTGAGTTTCTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAGGTACGGATTGTTAATTATTTTGTGATTTTTCAGTTTTTTTTTTGGTTTGATGTTTTATTGAGTGTTGTAGAATGTTGTTGTGTTGTAGAGCTTATTTTGTTGTGAATTTGAGGTTTTGAATTGATGGGGTTTGTGAAAAATTGATTCTTTTGGTTTGTTTTTGTACTGCTGTTTCTGGGTTTATGATTTTTTTTTTGAGTTTTGTAGAATGGAGATGTGTTGTTGAGCTAATTATATTGTGAATTTGGGGTTTTGAATTGATGGATTTTATGAAAAAATGATTCTTTTGCTTTGTTTTTGTATTGCTGTTTCTGGGTTTATGATTTTTTTTTTTTTGAGTTTTTTAGAATTGTGATATGTTGTAGAGCTAATTATATGTGAATTTGGGGTTTTGAATTGATACTTTTGCTTTGTTTTTGTATTACTGTTTCTGGGTTAGTAATTCTTTTTTTGAGTTCTATAGAATTGATATATGCTGTAGAGCTTATTTTATTGTGAATTTGGGGTTTTGAATTGATGAGTTTTGTCCAGTTTGGCTTTCAATTCTTTGCCTTTTGTGTTACTGTATCTGGGGTTTCTAATGTTTTCTAGAGTGTTGTAGAATTTCGTTACGTTCTAGGGATTATCATCTTGTGAATTTGGGGTCTTGAATTGATGGATTTTTTTCTAGTTTTTTTTTCGGAGGTGAGGGAAAGGGAAACGGAGGAGGGGGTTACAAGGTGAGGAATCGAACCTTCATCAACAAGGGGAAAGTTTAGGTAGCGCCAACCAATTGAGCTGATAAGATTCTCGATTGGTTTTTGTTCAGTTTTGTTTTCAATTTTTTTGTTTTCTGTGTGCTATTGTTTTTGGGTTTCTAATGGTTTCTCAAGTGTTGTAGAATTTCGTTACATTCTAGGGATTATTATTTTGTGAATTTGGGGTTTTGAGTTGATGGTTTTTTTTCTGTAGTTCAGTTTGATTTTCGATTCTTACGTTTATTGTTCTACTATTTCTGGATTTCTAATGTTTTCTGGAGTGTTGTGGAATTTCGGTATGTTCTAAAGCTTATGCTGATTAAAGACTTGTGGTTTAATGGTTACTTGATGTCACTCTATGTTATTAAAATTTGCTATGTTTATGGTGCTAGTTTTTTCTCCTTTCTGATTAATTTTTGCATCCTGTTGAGTTGTTGGTAAGACTCTAGCAGGAAGGTGTTGTGAAAACCCAGTTTTTCTTCATAAACATATGTAGACATTGCTAAATTGGAATGCCAATAAAGTGTCCCAAGATTTGCTTTAGAGTTCATGTTGCTTCGCGTGATCATATGAAATTGATTGGTTCGCCTTGTTCATGGCCCCATAGGAAAATTCCTAGATTTTCAAGTCTTTTCTCTCGTCATTTCCAAAAGAAACAGTGTAGAGTTCAGTTATCTCGTCAATGGCACCAATTCCATATGACTTGTCATGTCATAATATAATAACACAATTTTTCATGGTTACAACTTCTGAAAATGGCGTTCTGTATCAACTATCTATAGCCTTTAGGATACCTACTTATTTAGTAAGTTCCAACTGCACAACCACAACTTAGATGGTCTAACCACCCTATTTTTTCCGTTTTCTTTTCTTTTCTCTCTTTTGCACTTCCACATGGCTTCACTTATCAAGTGGGAATAGTTCAGCTCTTCACATTCATTGATCTTAGAATTGACCACTGTTTTGGTTTGTGTACAGCAATGGGAAATGTTCAAGTAATATCATAAATTGTACGTCTACAAATGTCAGTAGTACTATCACCAGAAAGCAGTTGCAAATTATTACTGCTGTTCCTTTCTACACATAAATCCTAGCTAAGATATAATACAAAAATTGCTCCGGACTTGTAAAAAGAGCGAGAAAGAAACTACATATTTTGCGTGACATGTTAACTATTTTTCCAATTGTATTCCTCCTTCTAGGTGAAAATTTTGTAGAGAGGAAAATTTAGGGCATGGTTTACAGTATTTGTGGTTGTAATGATTAAAGAAATTCAAATATGCATTGTCATTGCGCTTAAGTAAGGTATTTTCTCCAGTAAAGAAAAATTAACTAGAAGAAAAGGTTAGATAATGAAATATGTGTAGTTTGTAGGTTGCAAAATGAAGGTAGCTTTTCTTCTTTCCTTTTCAGTAGTTTACTTCCCAGTTTGGCAGATTCTTCATTTTTTCTGCCGAACCCATGTCGGCAAAACACAGTTGCGGATATGGTATTCGGTTAACCCACATAGAATAGGACTAATTTTGGGGGAAAATTGAGATTTTGATTTCTCAAAATAAAAGATAAAACAAAGTTAAGACATGGGAAATGGCATACCTTCAATCTTTTTTTTAGCTTTTCCTCTTGGTCAATGTTTGCTCTTTATAGATGTTTCTTTTTCATTAAAAAGAGGAATAATTTCTAAATTAATTATTTGCATGTTGATTTTTTGAGTATTAAAATATGTTTTTTTAATGCGCATATCTCTCAAACATTAGAATGTCTTTATAGCTCCACTTTTGTAATTTTGATTTTCTTTAACTGGATCCTAGCACTAGTATCCAAACCTTGATCTGTACCCCCGTATCTTAAATTTTGGATTTTGCTGAATCCTACCCTTGGATCCGCATCCGTGTTGGGTATCCTCACCCAAGTCTGAGCAACTTGTCGGTCAGTACTGTCAACAGAATGCTTCTTTTCCCATGAACTTCTATGTTTTTCTGTTCTCAGGTTCTTCATGTTCAAATAGGTTCAAATTCAATAACTGTTTAACTTTTAAATCACAGCTTCTCTATTCTTGCTAATTACTTCTTTTGAAAATGCACAGCATGATAGCTGGAATATGATTTTGTAAGCCCTATACTTGTGCTTCATTCCCCTGCCAAAAGTGTGTAGAAATTGGTACTTATAATTCAAAGACCGTCTTTGCGCAGGATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGTTGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTTTCTAGTTTAC-CAAAGGACTCAGATGCAAAATCATGTGGATCAGAAT</genome_strand>
        <mrna_strand>TTGGTCCAAGTCAATGAACAGCTACCCTTGTGGAGTTTGTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGATGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTGTCTAGTTTACTCAAAGGACTCAGATGCAAAATCATGTGGATCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273235" ref_strand="+" ref_description="SGN-E273235 [cLEM-24-K19]">
      <seq>attaatttaatcatcaaaatcaaaactttttaaaagggttgaatcaatctgttattgttatcatagtgtgtaaaaaatcttgaagaaaaaagataaaatcttgaaaaaagaacagtgggaacagaaaagtaaagagggctaatatagaggaggaagaacatcgccctcggttctagttactgtgcctcctctgtagatcttattgatttgggtgattttgttaaatgggtattgttcaaaagatagattcttgatttgtgtatttgttaattttttttttatgaaaaaagtttgatgaaatcatttttcattgttggggttgttttgatccgtttagtttgattgaatctgataattattggatcagttacagattgttgtgtgtctctgaagctcttcattatacttcacagtaaaaaaggaaaatgcaagttgatcttggtaagttattcgttggtgggatttcatgggacacagacgacgagcgtctgaaggagtattttagtacttatggggaggttgtagaagctgtaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6691" stop="8181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6991" g_stop="7411" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7412" i_stop="7763" i_length="352">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7764" g_stop="7881" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="539" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E273235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6991" e_stop="7411"/>
          <exon e_start="7764" e_stop="7881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAGGTATGTTCTTTACTGTTTTGGTTGTTGTTTCCTTAATCTGTATATCTTTTTTTTGTTAAGTAATGGATGTGGAATTTAATATTGTATTTTGGATTGAGTTTGAGGTGTCTCATTTTCTGTAAAATGGGTTTTTTCTTATGATGTTGTAGTAAGAATGCTTTGTCATTTCTTTTTGTTTTGAGCTGAGGTCCTTCCGAGGTAGGGGTAAGGTGCGCGTGTGGTTATGTTGTTGTTGTTGGGTTGTTCCTATGAGCAAATGTTATTTGGTTTTATTTTTTGGCTTGACGTTGCATAATGTTGAATGGAAAGTTTGGAAATGAGTATTTTATGACCATTGATTTTGGTATTGTAGGAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATG</genome_strand>
        <mrna_strand>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAG................................................................................................................................................................................................................................................................................................................................................................GAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745814" ref_strand="+" ref_description="SGN-E745814 [GI|47105056]">
      <seq>aatatagaggaggaagaacatcgccctcggttctagttactgtgcctcctctgtagatcttattgatttgggtgattttgttaaatgggtattgttcaaaagatagattcttgatttgtgtatttgttaattttttttttatgaaaaaagtttgatgaaatcatttttcattgttggggttgttttgatccgtttagtttgattgaatctgataattattggatcagttacagattgttgtgtgtctctgaagctcttcattatacttcacagtaaaaaaggaaaatgcaagttgatcttggtaagttattcgttggtgggatttcatgggacacagacgacgagcgtctgaaggagtattttagtacttatggggaggttgtagaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggatgcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaggtcaagcgcgctgttcccaaagagttatccccaggtcctagccaaagtccacttggtcggtacagctatggattaaataggatgaataacttccttgatgggtatgcacagggatactctccaaatacagttggaggatatggagtcggtatggatggtagatttagccccatcactgggggtaggagtgtctttactccatttggttctggttatggtatgggtcttaactttgaaccaggtctgagcccaggatatggtggtagtgcaaatgttaacagtagtttaagctatggacggggactgaatccatattatagctcaagcagacttggtggtggcattgggtttgacggaggaagtgggggaggaaacacttctttcttaaactcagcaaatcgcaatttatggggtgatggaggactgcaccatgggacgacctcgacaagctctagcaactttttagtatctggaagtggtggaaacattggaggaggaagctttagcaacagtggagtttggggttcatcaatttcctctcaaggcgggggaaatgtttctagcaaaaatggaaatctcggatatgtgaatggtgacagcatatatgggatggcaggaggctatggcagaaacgtcacaaaacgtggagccgctatgccatcaggatccaggggtagttatgatgggggccctttagctgatttatatggtagtggtttgggatatgatgatcacacttggcgtccttcaaattctgagcaggatgcaaccggttctcttggttatggactaggcaatggaccttctgacatgtcacctcaaagtacttcaggttatgttggtagttatggagttggcaatagacaaccaaacagaggaatggacggctaggagaatgtctcgaatcaaggctgttatagtacgcgagatctttttccgtctaagttgaatcatgaattttgaatatttccacaaattatataaaacttaagaagagttggacttccttttgtaggggacttggaaatgcctgctttttgaaggtctagagatagaactttgcaagacactttgttttaaaatgataattttttttttttttgagttatgttttagaaatttcctcttttttttcctcttcaagtaaggtgtaaaatcaaattgcagctgcagcaatacatacaaaggaaatagacagtttatttttgcacaaaatttttatattccatgtttttgctgtaaacgcgtcgaatgttatgtaatgctttctctattatttgctacgtcttctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6831" stop="13380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7131" g_stop="7411" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7412" i_stop="7763" i_length="352">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7764" g_stop="7989" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="507" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8293" g_stop="9484" g_length="1192"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="1699" r_length="1192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9485" i_stop="12664" i_length="3180">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12665" g_stop="13077" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1700" r_stop="2113" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2116" polyA_stop="2130"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E745814" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2112</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7131" e_stop="7411"/>
          <exon e_start="7764" e_stop="7989"/>
          <exon e_start="8293" e_stop="9484"/>
          <exon e_start="12665" e_stop="13077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAGGTATGTTCTTTACTGTTTTGGTTGTTGTTTCCTTAATCTGTATATCTTTTTTTTGTTAAGTAATGGATGTGGAATTTAATATTGTATTTTGGATTGAGTTTGAGGTGTCTCATTTTCTGTAAAATGGGTTTTTTCTTATGATGTTGTAGTAAGAATGCTTTGTCATTTCTTTTTGTTTTGAGCTGAGGTCCTTCCGAGGTAGGGGTAAGGTGCGCGTGTGGTTATGTTGTTGTTGTTGGGTTGTTCCTATGAGCAAATGTTATTTGGTTTTATTTTTTGGCTTGACGTTGCATAATGTTGAATGGAAAGTTTGGAAATGAGTATTTTATGACCATTGATTTTGGTATTGTAGGAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAGGTAAGCTTCACATGGTTAAGCTGTTGTCTTGTTGTCATTCTTATTATCTTGGACAAGTATAACTCTCATATGATCATATTATATAAGCTTCTAGCTATCTGCATCAACGTTAAGTTCTTCGCGTAGAGTAAGATTGTGCTTAAACTTCGTCTTTACGCTCTTTACTTTCCTAGAGAAAAGAGAGTGTATGTTACTGTCAAGTTATCCCGTCATCTTTTTGGCAATTTCCATTTATTTGGCTAAATTTTACTCATTGTTGGATGTACCGTTGTTGTCTTAGAATTCTAGTTATTCCCCTCTTTCTCAATCCATGTCTGGCAGCTAAAGTTTACTAATTTTAGGACTTGGTATTTATGAAATTGGGTTCTCAACACAGTGAACTTTAACACTGTTTATTTGATAATTTGGTTGTTTTCGTTCTTTTCTGTAACTTAAGCCTATGATTTTCTTTGTCTGTCCTAATTGTAATAGCTACATGAGTATAATTTCCACGTGCATCAAAAGATCAAGACTTTCTTGGATCAGAAAATAATAGTGCATACCCTATTATTGAAGTCTAGTTGTATGTAGTCTTGATGGTCTGGAAGTGATGCTTTTGTTCTAAAGTATTTATTTTGAAAGTTTACTTTATCCAGTAAACTGTTCCTACAAAAAGAGGGCCAAATAATTAATGTGCATTAATATCTATATAAATGATATAGCATTGTGGGATCGAAGACCTAAAAGATAGTTTATTTTGTTAAGCATGGTAAAATAGAGTCAAGAAACTTGGAATCAATTTGTGCTATTTAAATATGATATATTGACCAGATCTTAAACAATTTTTTTCATGGGAAAATACAGGAATTTTTTTTGAACTTGTTTTGGTTTGATCGTAATATCTGATATTTCATGTAAGTATGTTTTATTCTGAAACTTCGCCATGATTTGTATACGTTCTCTACTCAAATGGATCGGAAGTCCTTTATATCTGTTGCACCAACTCTTGTAGGAGTAGAGACTATAATTGATGAGCTAAAACAGCCCTCACATAACAGTATAGATAGAATTGATTCATGCGTTCCATAACATCTCTTCTCACCGTCTCAATTGAAAAAATGCAATAACTAAAATTTAACCATAAGCTTGTTGGGGCCTGCTACATAAATTCTCGCTATCTAGTTTGCTCCATTTAGACTTGTCTAATGGTAGCTACCAGTAAGAGTGGTCTTCATCTCAACTAGTTCGTATCACCTATATGGATCGTATTCTATTTTTCACTAAAGTCTGCATGAACTCCAAGAGACTTTAGGTCTTTTAAGACTTCCTTCTTTGTCATTTTAGGTGTACTTTGTCCCTTTTAAACACTTTCAACCATATGTTTGACACGTACTCTTACAAACCAGTGCTTGTGGAGCTCTACGTAGAACATGACTAAACCATTTTAAACAACCTTCTCTTATCTTAATTTTGTATGATTGCAAATGTATCCTATCTCTCGCATCTCTATAACGCCCATATTGTGGATATGTTGGATGTAGAGGCCGAACATTCACTCATCATAGACCATTGCTAACTTTACAGCCGTTCTAATAGGACTTGCCTTTACTTTGATATGGTATCATTCTGTTTGCGTAATACTCTGGTTGTACTTCTCCATTTACCATTCTTTTTCAGTTTTTTTATATCTTCATCTATCATGCGATTCTCATGGAGCATTGAGCCTAGATATCCGAATTGTCCACATTTAAGCATTGCAAACTTGGTCACTTCAATTCAACTCTTTGTATGCTGGATAACTCATATTTCGTTGTGACATCGTTTGGAACTTCTCACTTCTTGTTACATGTCCTTATATACCCTCTCAAGCTCCTCCTCCTTGATGCTAACTTCTGGAAAATAAAATAAGAGAGCATTGCAACTGTTTTTCGTTCATTGGCAAATCTTTCTGTGTGAAGATCTCTGGCAGTTACAAAAAGGGAACTGTCATTTTCATTGGTCCTCGCACAAATCTTTCAACTGGACCTCTGTTTTCTTTTTACACTTCCTGTGAAGTCCTAGAAATTCTTGCTGATGCACTTGAAGCACACAATAAGGACAGTATCATTTGGAATTCCTAATGCACCAGCAGCTCCATTTATTTTTATAATGTTAATTTACTCAGCCTCTCTTTAGAGCCTAGTGAAGGCCAACATCCACTAACTTCCCCGCCTCCTATATATAATCTTATCGAGCAACACTTCTATTTCGGTTTCTTTAAGACAAATGATAGATGACCTCTACCTTTTGTTGCCACTTTTACAACTGTTCTTTGAGACGGGTCCATTAGGCCCTCATATTTCATGTCAATGTGTTCTATTGTATACTGGATGGTTGTCATTCGGGTTTTTGACATCTTTCTCTGATTCCATCAGCTCTTTCCCCCTCTACTTTCATAATTTACTGAGGGTATTAGATTGCTAAGTTCCGACTTGTTCCTCCCAAAGGGCAATTTCTCCATTTCTAAAAGCCTCATAGAAGTGTAAATAATTAGTCTGAGGCACAAAGAATCCTTTGGACCGTGACATGGTTAGGTTTTTCTGCAATTGCCAAATGGCTGCAGATTAGCGCATCCGTGCCTTTTTGTGCTTCCATTTCTGACCGAAAGGTGGTCTACTTTTTTTCTCACTGGCTTCCCGACCTTGAAAATGGTCAGGTAGCCTTCATGGTTTGTTGTCTCTTCCTCTACTGATCGTAAGCACTGAGACAGATACATGTGATGAGAGAATAAAAGGATCCTTGTGCTAGAAACGACACAGCTTTTATTTATCAGATAATATGCGGAGGCAAATTCATGTCTTAGTATTTTTCTTAAAATGAAATTGTCTTCTGTGGGTAGGCTATGGGAAATTGACAAAGCTTTTCGAAGGACAATTTCATTGCTCATGACTGTCATCACTGAAATGCCTGAAAAACTTATCATCTTGAGTTTCTTTACTTAGTTTTCATGTAGATCTTGTTTATATATTTTCGTGCCATGAGGCATGAGCTTCGACCAAATAGTTTTGTCCTTGTACTCTTAGCTTGTTTTATTACACATGATATTTTCCTTAAATTTCCTTCCCATCCTCTCTTCTCATAGATGTATGCACATTTGCAGTTCTTCGAGTTGCGATGTCAGATAATGCTATGTTTTAATCTAATGTTCTTCCATCGATGCAGGAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAA-TTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</genome_strand>
        <mrna_strand>AATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAG................................................................................................................................................................................................................................................................................................................................................................GAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAATTTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206329" ref_strand="+" ref_description="SGN-E206329 [cLEC-23-K6]">
      <seq>ttgtagaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggatgcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaggtcaagcgcgctgttcccaaagagttatccccaggtcctagccaaagtccacttggtcggtacagctatggattaaataggatgaataacttccttgatgggtatgcacagggatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7562" stop="9026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7862" g_stop="7989" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8293" g_stop="8726" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="562" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E206329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7862" e_stop="7989"/>
          <exon e_start="8293" e_stop="8726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTC</genome_strand>
        <mrna_strand>TTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264143" ref_strand="+" ref_description="SGN-E264143 [cLEG-64-H1]">
      <seq>agaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggatgcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaagtcaagcgcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7566" stop="8920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7866" g_stop="7989" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8293" g_stop="8620" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="452" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E264143" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7866" e_stop="7989"/>
          <exon e_start="8293" e_stop="8620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTG</genome_strand>
        <mrna_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAAGTCAAGCGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264592" ref_strand="+" ref_description="SGN-E264592 [cLEG-67-L24]">
      <seq>agaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7566" stop="8805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7866" g_stop="7989" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8293" g_stop="8505" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="337" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E264592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7866" e_stop="7989"/>
          <exon e_start="8293" e_stop="8505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACT</genome_strand>
        <mrna_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260275" ref_strand="+" ref_description="SGN-E260275 [cLEG-53-H6]">
      <seq>agaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactggcactgagactgcctttaagcagtattttgagcaatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7566" stop="8766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7866" g_stop="7989" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8293" g_stop="8466" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="298" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E260275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7866" e_stop="7989"/>
          <exon e_start="8293" e_stop="8466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGA</genome_strand>
        <mrna_strand>AGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGGCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249466" ref_strand="+" ref_description="SGN-E249466 [cLEF-56-A18]">
      <seq>gactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcatgatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7590" stop="8808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7890" g_stop="7989" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8293" g_stop="8508" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="316" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E249466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7890" e_stop="7989"/>
          <exon e_start="8293" e_stop="8508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAA</genome_strand>
        <mrna_strand>GACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCATGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272443" ref_strand="+" ref_description="SGN-E272443 [cLEM-19-H23]">
      <seq>ttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggatgcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaggtcaagcgcgctgttcccaaagagttatccccaggtcctagccaaagtccacttggtcggtacagctatggattaaataggatgaataacttccttgatgggtatgcacagggatactctccaaatacagttggaggatatggagtcggtatggatggtagatttagccccatcactgggggtaggagtgtctttactccatttggttctggttatggtatgggtcttaactttgaaccangtctgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8064" stop="9157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8364" g_stop="8857" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E272443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8364" e_stop="8857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCC</genome_strand>
        <mrna_strand>TTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCANGTCTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736679" ref_strand="+" ref_description="SGN-E736679 [LC06CH09]">
      <seq>gtataatccattttgagctaaaaggggttcataatcaagattcaagattcatgaggccttggagatttctgtgaatttcttgtggtggtagtgattggaaggagtaggaacaatggtgggtcgatcgccaagtttgctgtcccggaatggaagttttaggccagaaaatctggggcaaaatgcattggcaattatagggaatctctgtttcactatatttgttgttggagttttgatttttactataatggctgcaacttatgagcctgaagatcctttattccatccttcgacgaaaatcactaatttccttacgtctaaatctgacgccacgtttaaagctgatgacactgttatgaagactggtgaggactttattggtgcaaatcagaaagcattttctaccttcataaacctaactgatgtcgacgtttcgctgtcagctacagacagtggcactgagagtgatcctgattgtcatgggaaaactgatgaaccaattgattgtaatgatccagatgtgttcatttgttgatgagagtagctattgagaagttcaaggatatacatttttacaggtttgggaagtcagtccgtggatcgaatgatagttcgtgccacatggcttggcggtttaggcctaaggatggaaagactgctgctttttacaaggattaccgcgagtttgtggtttctaggtcggagaactgtacgcttagtgtggtgagcattggagagtatcatactggtggaaatgctcggaaaaggaagagaaagagcaaggacagaatttctggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="23174" stop="25727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23474" g_stop="23528" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23529" i_stop="24681" i_length="1153">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24682" g_stop="25427" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="800" r_length="745" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E736679" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23474" e_stop="23528"/>
          <exon e_start="24682" e_stop="25427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAGGTAATTAAAAAAAAAGTTTTTGAATGTATAAATTTTCCATCAATTCACCATTAACAAAACTGACCCTTCATTCAGATCTGTGAATTTTTAGCTTTATTTTGTTAAATGAAACATTTTTCAAACACCCTTTGCTTCTGTTTGTGGAGTTCTGTTAATACTTCTTAAAAAAATTGTGTCTTTGTGTTCTAGGATTTGGAGGTTTGTGTGAATTGCTTGTGGTGATAGTGATTGGAGAATGGTTGGCTTTATTTTGTCAAATGTGGCATTTTTGGAGCACCATTTGCTTCTGTTTGATGAGTTCTACTCTCATGTGTTACATTTTTTTTTAAAAAAATTGTGTCTTTGTGCTTTAGGATTTAGAGTTTTTATTTTTTATTTTTGTGAATTGCTTGTGGTGATAGTGATTGGAATTTTTGGCTTTGTTTTATCAACTATAACATTTTCTGAGCACCCTTTGCTTGCGTTTGTTGAGTTCTACTTACATATGTTACATATTTTGAAGATATTTATGTGTTTGTGTTACAGGATTTAGAGGTTTTGTGAATTTCTTGAGGTTATAGTGATTGGGATTATTGGCTTTATTTTGTCAAATGTGGCAGTTTTCGAGCACCCTTTGCTTCTGTTTGTTGAGTTCTACTCTCATATGTTAAATGTATATATTTTTATAATTGTGTCTTTGTGTTTTAGGATTTAGAGTTTTTTCTTGAATTGCTTGTGGTGATAGTGATGGAGAATGGTTGGCTTTGTTTATCAACTATAACATTTTTTGAGCGCCCTTTGCTTGCGTTTGTTGGGTTTTACTCTCATATGTGTACATATTTTAATGATTTTTGTGTTGTACGATTTAGAGGTTTTTGTGGATTTCTTGTGGGGATAGTGATTGAAATTATTGGCTTTATTTTGTCAAATGAGACATATTTCGAGCACCCTTTGCTTCTGTTTCTGGACTTCTATCTCATATGTTAAAGATTTTTATGTGTTCGTGTTTTAAGATTTAGAGATTTTTGTGAATTTCTTGTGGTGATCATAGTGATCGAAATGTTGGCATTATTTTGCTAAAGGTAACATCTTTCAAGCACCCTTTACTTCTCTCTCTGGAGTTCTGTCCTTATATGTTACATATTTTGAAGATTTTTGGGTCTTTCTGTTTCAGGCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATACATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTGTTTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGATTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</genome_strand>
        <mrna_strand>GTATAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATGCATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTG-TTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGGTTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716382" ref_strand="+" ref_description="SGN-E716382 [FB16DF02]">
      <seq>agagaattggcactgaaataaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgttggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgttcacagtgccctcgataagcttcaaggccattacaagaagctggattctggtgtcctcagcagactaccgcgaggcagcttcaggggaaagaaggttgaataaatcttcaatttactgaaggtaaactcgtggagaaaaaacattagcctgtatgcagagatcaaatatgaaactcgttttcgtgcttaggcaacacattgctgtatgtatgcttaggattaatcgacgaggtattgaactgtaggtcatctcgtcgtgtaaatgttgcaggtacttcgattgaagtttggtatttgaaaataaattgaattttgcagaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28978" stop="26866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28678" g_stop="28596" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27558" g_stop="27171" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="541" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="564"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E716382" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28678" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCAGAAA</genome_strand>
        <mrna_strand>AGAGAATTGGCACTGAAATAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTTGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTCACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGTATTTGAAAATAAATTGAATTTTGCAGAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234328" ref_strand="+" ref_description="SGN-E234328 [cLEL-8-A16](-)">
      <seq>cgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgtttacagtgccctcgataagcttcaaggccattacaaaaagctggattctggtgtcctcagcagactaccgcgaggcagcttcaggggaaagaaggttgaataaatcttcaatttactgaaggtaaactcgtggagaaaaaacattagcctgtatgcagagatcaaatatgaaactcgttttcgtgcttaggcaacacattgctgtatgtatgcttaggattaatcgacgaggtattgaactgtaggtcatctcgtcgtgtaaatgttgcaggtacttcgattgaagtttggcatttgaaaataaattgaattttgccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27851" stop="26866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27551" g_stop="27171" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="417"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E234328" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27551" e_stop="27171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCAGAAA</genome_strand>
        <mrna_strand>CGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAAAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353427" ref_strand="+" ref_description="SGN-E353427 [cTOS-15-H2]">
      <seq>ttacctgaagacctcttcatcaatattgccaagagaattggcactgaattaaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgtttacagtgccctcgataagcttcaaggccattacaagaagctggattctggtgtcctcagcagactaccgcgaggcagcttcaggggaaagaaggttgaataaatcttcaatttactgaaggtaaactcgtggagaaaaaacattagcctgtatgcagagatcaaatatgaaactcgttttcgtgcttaggcaacacattgctgtatgtatgcttangattaatcgacgaggtattgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29009" stop="26950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28709" g_stop="28596" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="184" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27558" g_stop="27250" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="493" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E353427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28709" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTG</genome_strand>
        <mrna_strand>TTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTANGATTAATCGACGAGGTATTGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730746" ref_strand="+" ref_description="SGN-E730746 [LA25AC08]">
      <seq>cttttttattttctttgctagtttctccagttttgagtactttgggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaattggcactgaaataaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttacactgagcttgttggctgcctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgttcacagtgccctcgataagcttcaaggccattacaagaagctggattctggtgtccccagcagactaccgcgaggcagcttcaggggaaagaaggttgaataaatcttcaatttactgaaggtacactcgtggagaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31833" stop="27049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31534" g_stop="31470" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="267" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="448" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="587" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="658" r_length="71" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27349" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="868" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E730746" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31534" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTG-CTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACA</genome_strand>
        <mrna_strand>CTTTTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAAATAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTGAGCTTGTTGGCTGCCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTCACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCCCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTACACTCGTGGAGAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693107" ref_strand="+" ref_description="SGN-E693107 [LH_Ea10H09]">
      <seq>ctttataattcttgataaagaaaaaagaaagttcaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattctttcaagaggaaagtgaaagctctgttagtgctcaattcaataggttatttggacgtcaaaaaccaatccaccactgtttgggtggaggcaaatctgctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctacagccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcaatttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaataggcactgaaataaaccatggtttgggcttccttcaaaatgctgccttgggcggtaatctgaaacaatttgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgtttacagtgccctcgataagcttcaaggccattacaagaagctggattctggtgtcctcagcagactaccgcgaggcagcttcaggggaaaagaaggtgaataaatcttcaatttactgaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="30547" stop="27066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="221" r_length="202" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="402" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="541" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="611" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27558" g_stop="27366" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="804" r_length="193" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E693107" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAA</genome_strand>
        <mrna_strand>GAAAAAAGAAAGTTCAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTCTTTCAAGAGGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGTTATTTGGACGTCAAAAACCAATCCACCACTGTTTGGGTGGAGGCAAAT................................................................................CTGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACAGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAATTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATAGGCACTGAAATAAACCATGGTTTGGGCTTCCTTCAAAATGCTGCCTTGGGCGGTAATCTGAAACAATTTGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAAGAAGGTGAATAAATCTTCAATTTACTGAAGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700898" ref_strand="+" ref_description="SGN-E700898 [FA14BH08]">
      <seq>gtccttagtactttgaggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcagtggactctatttctgagggtgagctgaaacacgaagctacggcattttttcgagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgataccatggtgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggctcctcgtcttgtcttacctgaagacctcttcatcgatattgccaagagaattggcactgaaataaaccatgggttgggcttccttcaagatgctgccttgggcggcaatctgaaacaattcgtagaggttatactgagcttgttggctgctggcatgatcggaacctggtgcaacttcttgactgttctgaatattgacttcatcgctgctcacactctaccagggctatacgagagatatgaagatgaagtggatggtttcgttcacagtgccctcgataagcttcaaggccattacaagaagctggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31802" stop="27142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31505" g_stop="31470" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="240" r_length="203" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="421" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="560" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="630" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27442" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="747" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E700898" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31505" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAGTACTTTG-GGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCA-TGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTG</genome_strand>
        <mrna_strand>GTCCTTAGTACTTTGAGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCAGTGGACTCTATTTCTGAGGGTGAGCTGAAACACGAAGCTACGGCATTTTTTCGAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATACCATGGTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGCTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCGATATTGCCAAGAGAATTGGCACTGAAATAAACCATGGGTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGCAATCTGAAACAATTCGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTTGGCTGCTGGCATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGAATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................ACTTCATCGCTGCTCACACTCTACCAGGGCTATACGAGAGATATGAAGATGAAGTGGATGGTTTCGTTCACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546009" ref_strand="+" ref_description="SGN-E546009 [TUS-69-C11]">
      <seq>ccagttttgtgtactttgggtttataattcttgataaagaaaaaagaaagatcaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattctttcaagaggaaagtgaaagctctgttagtgctcaattcaataggttatttggacgtcaaaaaccaatccaccactgtttgggtggaggcaaatctgctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctacagccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcaatttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaataggcactgaaataaaccatggtttgggcttccttcaaaatgctgccttgggcggtaatctgaaacaatttgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31808" stop="27202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31508" g_stop="31470" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="240" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="421" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="560" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="630" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27502" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="687" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E546009" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31508" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTG</genome_strand>
        <mrna_strand>CCAGTTTTGTGTACTTTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAAAAGAAAGATCAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTCTTTCAAGAGGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGTTATTTGGACGTCAAAAACCAATCCACCACTGTTTGGGTGGAGGCAAAT................................................................................CTGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACAGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAATTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATAGGCACTGAAATAAACCATGGTTTGGGCTTCCTTCAAAATGCTGCCTTGGGCGGTAATCTGAAACAATTTGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332317" ref_strand="+" ref_description="SGN-E332317 [cTOD-17-N7]">
      <seq>cagttttgagtactttgggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaattggcactgaattaaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacnttctgactggtctgtatattgggttcatcgctgctcacactctaccagtgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31807" stop="27225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31507" g_stop="31470" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="240" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="421" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="560" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="630" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27525" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="664" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E332317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31507" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATA</genome_strand>
        <mrna_strand>CAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACNTTCTGACTGGTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCATCGCTGCTCACACTCTACCAGTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696947" ref_strand="-" ref_description="SGN-E696947 [LH_Ea10H09](-)">
      <seq>gctttataattcttgataaagaaaaaagaacgctcaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacgaagctacgtcattctttcaagaggaaagtgaaagctctgttaatgctcaattccataggttatttggacgtcaaaaaccaatccaccactgtttgggtggaggcaaatctgctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctacagccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcaatttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcggcctgacgtacctgaagacctcttcatcaatattgccaagagaataggcactgaaataaaccatggattgggcttccttcaaaatgctgccttgggcggtaatctgaaacaatttgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgaatattggtatcatcgctgctcacactctaccagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31790" stop="27228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31490" g_stop="31470" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="222" r_length="201" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="403" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.486" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="542" r_length="139" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="612" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27528" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="643" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E696947" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31490" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCT</genome_strand>
        <mrna_strand>GCTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AAAAGAACGCTCAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACGAAGCTACGTCATTCTTTCAAGAGGAAAGTGAAAGCTCTGTTAATGCTCAATTCCATAGGTTATTTGGACGTCAAAAACCAATCCACCACTGTTTGGGTGGAGGCAAAT................................................................................CTGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACAGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAATTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGGCCTGACGTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATAGGCACTGAAATAAACCATGGATTGGGCTTCCTTCAAAATGCTGCCTTGGGCGGTAATCTGAAACAATTTGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGAATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCGCTGCTCACACTCTACCAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320964" ref_strand="+" ref_description="SGN-E320964 [cTOB-13-K20]">
      <seq>ttgggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaattggcactgaattaaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattgggttcatcgctgctcacactctaccagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31793" stop="27229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31493" g_stop="31470" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="226" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="407" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="546" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="616" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27529" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="646" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E320964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31493" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGC</genome_strand>
        <mrna_strand>TTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCATCGCTGCTCACACTCTACCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248694" ref_strand="+" ref_description="SGN-E248694 [cLEF-58-E8]">
      <seq>tttgagtactttgggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaagtggaggcaaatcggctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaattggcactgaattaaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31803" stop="27665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31503" g_stop="31470" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="236" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="417" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="556" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27965" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="618" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E248694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31503" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTACTTTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCT</genome_strand>
        <mrna_strand>TTTGAGTACTTTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAAGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267217" ref_strand="+" ref_description="SGN-E267217 [cLEI-4-O6]">
      <seq>aacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgatagcatgtagtggagaaacaagaaaatttcatccggcgttttaatcactgctactgccatctgggtgctattcgagtggcttaactacaattctctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctaccgttcctcgtcttgtcttacctgaagacctgttcatcaatattgccaagagaattggcactgaattaaaccatggcttgggcttacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="30489" stop="28335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30189" g_stop="30042" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="329" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28734" g_stop="28635" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="429" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E267217" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30189" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAA</genome_strand>
        <mrna_strand>AACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTAGTGGAGAAACAAGAAAATTTCATCCGGCGTTTTAATCACTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTCTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACCGTTCCTCGTCTTGTCTTACCTGAAGACCTGTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGCTTGGGCTTACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345611" ref_strand="+" ref_description="SGN-E345611 [cTOF-18-O11]">
      <seq>gaacatcacgaattctgcgtggaacaagtggcacattcaaatattacattaaggttgttccaactgagtatagatatatatcaaaagaagttttaccaacaaatcaattttctgtaacggagtacttttctcccatccatgattttgaacggacatggccagctgtatacttcttatatgatctgtcaccaattaccgtgaccattagagaagaacgtcgcagttttctgcacttcatcactcggctctgtgcagttttgggtggtacatttgccttgacaggcatgctagatggatggatgtacaagattcttgaatctgttacaaagaaaaacagcagaactattgtgcgctaaacgtcgaatcattgcactactgatatgttcaggcaaagctgaattgcagatcactggtgatctaggcaaaagctttagcaaacaaagcagatcaacattatgtttatgaacaagttgtttttatccccagtggttttgtagcactagaagaacaatacccaagtttattctagagaagaaaatgtattattcattggtttatgtaacaaaacctaggaatatgaaacattttgctgtcaattttgctcagttgttgaaaactgaaaatgttatataaatcaacatattgatatctttttatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35407" stop="37179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35719" g_stop="35827" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="162" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35828" i_stop="35906" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36026" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="282" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36027" i_stop="36500" i_length="474">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36501" g_stop="36891" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="673" r_length="391" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E345611" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35719" e_stop="35827"/>
          <exon e_start="35907" e_stop="36026"/>
          <exon e_start="36501" e_stop="36891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCCAACTGAGTATAGATATATATCAAAAGAAGTTTTACCAACAAATCAATTTTCTGTAACGGAGTACTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAGGTGTGTCTCTGCTCTCCTTCTCCCTTTTCCTCTTGCTGTATTTCATCTTTCACTGAGTGTCTTTTGCCGCTTTATGCAGCTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAGGTTTGCCGTAACTCCCTGATAATTTGTTGTACACTACTAGTCGAAATGTTCCTCATTTAATTGAACCAATTGCTCTTGACTTGAATATCCATGAAGAAGTGAAAATCATTTCCCCAGGTGCACGCAAAATGTTGAGCAATGTCTGGTGTGAGAAATTTTGAGTGACTAGGTTATGATGTCATTTCCTGTTTTCAAAGTAGAATGCCATTTTTTATGCTGATATTATCGCAATGATGGATTTGGATTGGGATAGTTTCTCTTCATTACCACTTACTAAGAAGTCTTACCGGTTATGAATTGACAAATCACTTGATGCTTTTGGCTTATATCATCTTAAAGTCTTTTTCTTGGCTGGCATTTCCCTCCCTCGCAAATTGTTTTTTGCAGAAGAAATCCAACTGTTATAAGCCTGTCAGAGATCTTCAACATGTAGTCGAACATACTGACGAACATGGTATTTGTTTTGTGTAATAGGCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTATCAGATGGGCATTTATA</genome_strand>
        <mrna_strand>GTTGTTCCAACTGAGTATAGATATATATCAAAAGAAGTTTTACCAACAAATCAATTTTCTGTAACGGAGTACTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAG...............................................................................CTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369937" ref_strand="+" ref_description="SGN-E369937 [TUS-26-D21](-)">
      <seq>aatcaaaagaagttttaccaacaaaatcaattttctgtaacggagtacttttctcccatccatgattttgaacggacatggccagctgtatacttcttatatgatctgtcaccaattaccgtgaccattaaagaagaacgtcgcagttttctgcacttcatcactcggctctgtgcagttttgggtggtacatttgccttgacaggcatgctagatggatggatgtacaagattcttgaatctgttacaaagaaaaacagcagaactattgtgcgctaaacgtcgaatcattgcactactgatatgttcaggcaaagctgaattgcagatcactggtgatctaggcaaaagctttagcaaacaaagcagatcaacattatgtttatgaacaagttgtttttatccccagtggttttgtagcactagaagaacaatacccaagtttattctagagaagaaaatgtattattcattggtttatgtaacaaaacctaggaatatgaaacattttgctgtcaattttgctcagttgttgaaaactgaaaatgttatataaatcaacatattgatatctttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35445" stop="37179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35744" g_stop="35827" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35828" i_stop="35906" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36026" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="205" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36027" i_stop="36500" i_length="474">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36501" g_stop="36882" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="587" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E369937" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35744" e_stop="35827"/>
          <exon e_start="35907" e_stop="36026"/>
          <exon e_start="36501" e_stop="36882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAAAGAAGTTTTACCAAC-AAATCAATTTTCTGTAACGGAGTACTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAGGTGTGTCTCTGCTCTCCTTCTCCCTTTTCCTCTTGCTGTATTTCATCTTTCACTGAGTGTCTTTTGCCGCTTTATGCAGCTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAGGTTTGCCGTAACTCCCTGATAATTTGTTGTACACTACTAGTCGAAATGTTCCTCATTTAATTGAACCAATTGCTCTTGACTTGAATATCCATGAAGAAGTGAAAATCATTTCCCCAGGTGCACGCAAAATGTTGAGCAATGTCTGGTGTGAGAAATTTTGAGTGACTAGGTTATGATGTCATTTCCTGTTTTCAAAGTAGAATGCCATTTTTTATGCTGATATTATCGCAATGATGGATTTGGATTGGGATAGTTTCTCTTCATTACCACTTACTAAGAAGTCTTACCGGTTATGAATTGACAAATCACTTGATGCTTTTGGCTTATATCATCTTAAAGTCTTTTTCTTGGCTGGCATTTCCCTCCCTCGCAAATTGTTTTTTGCAGAAGAAATCCAACTGTTATAAGCCTGTCAGAGATCTTCAACATGTAGTCGAACATACTGACGAACATGGTATTTGTTTTGTGTAATAGGCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTATCAGATGG</genome_strand>
        <mrna_strand>AATCAAAAGAAGTTTTACCAACAAAATCAATTTTCTGTAACGGAGTACTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAG...............................................................................CTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAAAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711837" ref_strand="+" ref_description="SGN-E711837 [FB03AF01]">
      <seq>cttttctcccatccatgattttgaacggacatggccagctgtatacttcttatatgatctgtcaccaattaccgtgaccattagagaagaacgtcgcagttttctgcacttcatcactcggctctgtgcagttttgggtggtacatttgccttgacaggcatgctagatggatggatgtacaagattcttgaatctgttacaaagaaaaacagcagaactattgtgcgctaaacgtcgaatcattgcactactgatatgttcaggcaaagctgaattgcagatcactggtgatctaggcaaaagctttagcaaacaaagcagatcaaaattatgtttatgaacaagttgtttttatccccagtggttttgtagcactagaagaacaatacccaagtttattctagagaagaaaatgtattattcattggtttatgtaacaaaacctaggaatataaaacattttgctgtcaattttgctcagttgttgaaaactgaaaatgttatataaatcaacatattgatatctttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35490" stop="41765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35790" g_stop="35827" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35828" i_stop="35906" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36026" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="158" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36027" i_stop="36500" i_length="474">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36501" g_stop="36887" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="545" r_length="387" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E711837" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35790" e_stop="35827"/>
          <exon e_start="35907" e_stop="36026"/>
          <exon e_start="36501" e_stop="36887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAGGTGTGTCTCTGCTCTCCTTCTCCCTTTTCCTCTTGCTGTATTTCATCTTTCACTGAGTGTCTTTTGCCGCTTTATGCAGCTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAGGTTTGCCGTAACTCCCTGATAATTTGTTGTACACTACTAGTCGAAATGTTCCTCATTTAATTGAACCAATTGCTCTTGACTTGAATATCCATGAAGAAGTGAAAATCATTTCCCCAGGTGCACGCAAAATGTTGAGCAATGTCTGGTGTGAGAAATTTTGAGTGACTAGGTTATGATGTCATTTCCTGTTTTCAAAGTAGAATGCCATTTTTTATGCTGATATTATCGCAATGATGGATTTGGATTGGGATAGTTTCTCTTCATTACCACTTACTAAGAAGTCTTACCGGTTATGAATTGACAAATCACTTGATGCTTTTGGCTTATATCATCTTAAAGTCTTTTTCTTGGCTGGCATTTCCCTCCCTCGCAAATTGTTTTTTGCAGAAGAAATCCAACTGTTATAAGCCTGTCAGAGATCTTCAACATGTAGTCGAACATACTGACGAACATGGTATTTGTTTTGTGTAATAGGCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTATCAGATGGGCATT</genome_strand>
        <mrna_strand>CTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAG...............................................................................CTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAAAATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATAAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365024" ref_strand="+" ref_description="SGN-E365024 [cLPP-17-D6]">
      <seq>cctgcttcacatcctggtgttgtatctgatatacattttgaagatatcattgtgcaaaatgttagcaaccctattgtcattgatcaagtttattgcccaagtggaaaatgcaacaaagacttgccttcacaagtgaagattagcaaggtgtctatccaaaacataaaaggtacatcaagaactcataatgcagtctcactaacttgtagcaaaggctcaccatgtgaaggtgttgaagttggagatgttgacatttcatatagtggtaaagaaggaccagcaaaatcaagttgtgaaaatattaagccaacttttaagggaaaacaaactccagctatttgttcagctggtgctgatgctcctgcttatgctcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40096" stop="38668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39796" g_stop="39677" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39676" i_stop="39214" i_length="463">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39213" g_stop="38958" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="376" r_length="256" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E365024" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39796" e_stop="39677"/>
          <exon e_start="39213" e_stop="38958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTTCACATCCTGGTGTTGTATCTGATATACATTTTGAAGATATCATTGTGCAAAATGTTAGCAACCCTATTGTCATTGATCAAGTTTATTGCCCAAGTGGAAAATGCAACAAAGACGTAAGTATATATCGCTCGATCTACTAGTTCAGATGATTGAGATTTTCACATTCTTTCGCATACTACATGGATACTTTTACAAAAATAACCACTTTTTGCTGCTTTTATTTAAAAACTAGCCACTTTTTTAAAAACTTAGGCCATTGGTCTAAAGTTTTCAAAATGTGTCCCAATGAATTACATTTAATCTATTGTGCATTGTTTTTCTTCTCTTAATAGATATAGTTGACCACTTTATCTAGCTAATTTGCAAAAAGATAACCACTTTTGTCTCGCCAGAGTCAATCGTTTTTCCAACATCAAATCGTTGGTCTAAAGTTCAAAAGCGGCCCTACCCACCCACTATACACATACACACACACACACTATACCTATTATGCATACTCTTACTTACTTATACCTCTAAGTCACACGTACAACGATAACCTTTATATTCGATATTTCACGATCCTTTTTTTTGTAGTTGCCTTCACAAGTGAAGATTAGCAAGGTGTCTATCCAAAACATAAAAGGTACATCAAGAACTCAAAATGCAATCTCACTAACTTGTAGCAAAGGCTCACCATGTGAAGGTGTTGAAGTTGGAGATGTTGACATTTCATATAGTGGTAAAGAAGGGCCAGCAAAATCAAGTTGTGAAAATATTAAGCCAACTTTTAAGGGAAAACAAACTCCAGCTGTTTGTTCAGCTGGTGCTGATGCTCCTGCTCCCGCCGCCG</genome_strand>
        <mrna_strand>CCTGCTTCACATCCTGGTGTTGTATCTGATATACATTTTGAAGATATCATTGTGCAAAATGTTAGCAACCCTATTGTCATTGATCAAGTTTATTGCCCAAGTGGAAAATGCAACAAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTTCACAAGTGAAGATTAGCAAGGTGTCTATCCAAAACATAAAAGGTACATCAAGAACTCATAATGCAGTCTCACTAACTTGTAGCAAAGGCTCACCATGTGAAGGTGTTGAAGTTGGAGATGTTGACATTTCATATAGTGGTAAAGAAGGACCAGCAAAATCAAGTTGTGAAAATATTAAGCCAACTTTTAAGGGAAAACAAACTCCAGCTATTTGTTCAGCTGGTGCTGATGCTCCTGCTTATGCTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546785" ref_strand="+" ref_description="SGN-E546785 [TUS-70-F7]">
      <seq>aaaaacataaaaaaaaaattcaaaaaaagaaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagcaagctctgtgaatatcacagagtctgctttctcacgggagatgattgtatctccattggcgatgaaacggacaactttacatcactaaagtcacttgtggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41527" stop="39616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41229" g_stop="41063" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="467" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="39916" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="742" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E546785" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41229" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="39916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAGAAAAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCACTAAAGTCACTTGTGGACCTG</genome_strand>
        <mrna_strand>AAAAACATAAAAAAAAAATTCAAAAAAAGAAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTGCTTTCT-CACGGGAGATGATTGTATCTCCATTGGCGATGAAACGG-ACAACTTTACATCACTAAAGTCACTTGTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362592" ref_strand="+" ref_description="SGN-E362592 [cLPP-1-H11]">
      <seq>gaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagcaagctctgtgaatatcacagagtctgctttctccacgggagatgattgtatctccattggcgatgaaacggaacaactttacatcactaaagtcacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41483" stop="39623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="41063" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="421" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="39923" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="691" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E362592" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="39923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCACTAAAGTCACTTGT</genome_strand>
        <mrna_strand>GAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTGCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCACTAAAGTCACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360146" ref_strand="+" ref_description="SGN-E360146 [cLPP-14-H10]">
      <seq>tgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagcaagctctgtgaatatcacagagtctgctttctccacgggagatgattgtatctccattggcgatgaaacggaacaactttacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40894" stop="39636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40594" g_stop="40291" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40192" g_stop="39936" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="561" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E360146" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40594" e_stop="40291"/>
          <exon e_start="40192" e_stop="39936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCAC</genome_strand>
        <mrna_strand>TGAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTGCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363774" ref_strand="+" ref_description="SGN-E363774 [cLPP-3-M18]">
      <seq>gtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagcaagctctgtgaatatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41474" stop="39705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41174" g_stop="41063" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="412" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40005" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="600" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E363774" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41174" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCAC</genome_strand>
        <mrna_strand>GTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330465" ref_strand="+" ref_description="SGN-E330465 [cTOD-4-N13]">
      <seq>aaaaatttaaaaaaaaagaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaattgtgatcccaaaaggaacattccaaatgaaccaagtgctattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacagatcctaatgcaattaaaactggtgaatggttaacagtaaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacttaacattcaccaaattcaacgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagcaagctctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41517" stop="39712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41217" g_stop="41063" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="455" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40012" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="636" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E330465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41217" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGA</genome_strand>
        <mrna_strand>AAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331603" ref_strand="+" ref_description="SGN-E331603 [cTOD-7-A9]">
      <seq>aatgttgatattagtgaggctgttggaaaagctttgggagaggcatgtgcatcaacaagtccaagtacaattgtgatcccaaaaggaacattccaaatgaaccaagtgctattagaaggaccatgcaaaggccctattgaacttaaattcaagccattttgaaagcaccaacagatcctaatgcaattaaaactggtgaatggttaacagtaaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacttaacattcaccaaattcaacgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40909" stop="39723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="317" r_length="299" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40192" g_stop="40023" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="487" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E331603" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGC</genome_strand>
        <mrna_strand>GCTGTTGGAAAAGCTTTGGGAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTT-AAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362230" ref_strand="+" ref_description="SGN-E362230 [cLPP-10-A2]">
      <seq>tttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgcttccgctgatagcccgaacactgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41446" stop="39739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41146" g_stop="41063" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="384" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40039" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="538" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E362230" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41146" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAA</genome_strand>
        <mrna_strand>TTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTTCCGCTGATAGCCCGAACACTGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364034" ref_strand="+" ref_description="SGN-E364034 [cLPP-16-J7]">
      <seq>ttttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgctccggctgatagcccgaacactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41465" stop="39741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41165" g_stop="41063" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="403" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40041" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="555" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E364034" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41165" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGG</genome_strand>
        <mrna_strand>TTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360511" ref_strand="+" ref_description="SGN-E360511 [cLPP-8-O24]">
      <seq>taaaaaaaaaattcaaaaaaagaaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattcaatgtcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41523" stop="39768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41223" g_stop="41063" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="460" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40068" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="585" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E360511" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41223" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGC</genome_strand>
        <mrna_strand>TAAAAAAAAAATTCAAAAAAAGA-AAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTCAATGTCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330427" ref_strand="+" ref_description="SGN-E330427 [cTOD-4-K18]">
      <seq>gaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaattgtgatcccaaaaggaacattccaaatgaaccaagtgctattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacagatcctaatgcaattaaaactggtgaatggttaacagtaaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacttaacattcaccaaattcaacgtcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41483" stop="39768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="41063" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="421" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40068" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="546" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E330427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGC</genome_strand>
        <mrna_strand>GAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363171" ref_strand="+" ref_description="SGN-E363171 [cLPP-19-G15]">
      <seq>aaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgttaaccaatgcaagaacataacattcaccaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41494" stop="39779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41194" g_stop="41063" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="432" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40079" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="546" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E363171" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41194" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTC</genome_strand>
        <mrna_strand>AAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACATAACATTCACCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362145" ref_strand="+" ref_description="SGN-E362145 [cLPP-11-B23]">
      <seq>gtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgtgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41474" stop="39813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41174" g_stop="41063" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="412" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40113" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="492" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E362145" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41174" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGT</genome_strand>
        <mrna_strand>GTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359901" ref_strand="+" ref_description="SGN-E359901 [cLPP-9-F16]">
      <seq>tttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaacattggatagcaaagcattccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41473" stop="39819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41173" g_stop="41063" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="411" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40119" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E359901" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41173" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGT</genome_strand>
        <mrna_strand>TTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360698" ref_strand="+" ref_description="SGN-E360698 [cLPP-7-H10]">
      <seq>tagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaactgaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41442" stop="39866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41142" g_stop="41063" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="380" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40166" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="407" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E360698" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41142" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAAAT</genome_strand>
        <mrna_strand>TAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACTGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363550" ref_strand="+" ref_description="SGN-E363550 [cLPP-3-A15]">
      <seq>tatggtgccacagccaatgcggatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaagtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccctcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41395" stop="39868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41095" g_stop="41063" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="333" r_length="300" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40168" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="358" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E363550" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41095" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCTCACAA</genome_strand>
        <mrna_strand>TATGGTGCCACAGCCAATGCGGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAAGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361386" ref_strand="+" ref_description="SGN-E361386 [cLPP-6-I16]">
      <seq>aaattcaaaaaaagaaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41515" stop="39873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41215" g_stop="41063" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="452" r_length="300" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40173" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="472" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E361386" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41215" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCCT</genome_strand>
        <mrna_strand>AAATTCAAAAAAAGA-AAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394136" ref_strand="+" ref_description="SGN-E394136 [TUS-40-N21]">
      <seq>aaaaaatttaaaaaaaaagaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaattgtgatcccaaaaggaacattccaaatgaaccaagtgctattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacagatcctaatgcaattaaaactggtgaatggttaacagtaaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagcttcccaataatttgagcttcaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41518" stop="39874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41218" g_stop="41063" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40291" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="456" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40192" g_stop="40174" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="475" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E394136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41218" e_stop="41063"/>
          <exon e_start="40590" e_stop="40291"/>
          <exon e_start="40192" e_stop="40174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAATGTAAGTTTCGTGTTTCTGTTCGATCAAACTTTTAAAATCTATTTTTTTCACGAGCAAACGCGTACTAACACTATTTTTGTGTTTTTATTTTGGTGTAGAATTTGAGCTTCAACTCCC</genome_strand>
        <mrna_strand>AAAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT..................................................................................................AATTTGAGCTTCAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363095" ref_strand="+" ref_description="SGN-E363095 [cLPP-19-G5]">
      <seq>aaaatggatatgaaaatcaagtttgtttattttggagggggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattattgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaaaactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtcttgtggtggaacacttgatggtcaaagtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41494" stop="39998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41194" g_stop="41063" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40298" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="425" r_length="293" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E363095" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41194" e_stop="41063"/>
          <exon e_start="40590" e_stop="40298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCT</genome_strand>
        <mrna_strand>AAAATGGATATGAAAATCAAGTTTGTTTATTTTGGAGGGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTATTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAAACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTTGTGGTGGAACACTTGATGGTCAAAGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363970" ref_strand="+" ref_description="SGN-E363970 [cLPP-16-C24]">
      <seq>aaaaattcaaaaaaagaaaaaaaaaatggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41517" stop="39999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41217" g_stop="41063" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40299" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="446" r_length="292" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E363970" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41217" e_stop="41063"/>
          <exon e_start="40590" e_stop="40299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGC</genome_strand>
        <mrna_strand>AAAAATTCAAAAAAAGA-AAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364100" ref_strand="+" ref_description="SGN-E364100 [cLPP-16-C9]">
      <seq>tattttggattgggtgtgttatttctagcacattttggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgatattagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtacaatcgtgatcccaaaaggaacatttcaaatgaaccaagtgaaattagaaggaccatgcaaaggccctattgaacttcaaattcaagccattttgaaagcaccaacggaccctaatgcaatcaagactggtgaatggttaacagtcaacaaacttgatttcttcacaatgtctggtggtggaacacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41467" stop="40051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41167" g_stop="41063" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40351" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="345" r_length="240" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E364100" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41167" e_stop="41063"/>
          <exon e_start="40590" e_stop="40351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAGGTAAGTCATGCATTTTTTTTTCCTCTCATTATTTTGTTGATTTCAACCTACTTTCATCAAAAAAAAAAAATCACTTTGTTTTTAAACGATGAATAAAATAAGTAAGTTATTACCATCGAAGGATGTGGTCATGTGGCCTAGCTACATTCAGTTGAATCTCATTCGCTTGAAAAGTATAATGCATGAATTAAGACAAAAATGATTATGAATCGTTGAATGTGAGTTACATATATAAAGACAAAATTGTCTTTAGGACATAGATTCAAGTAATATTTTTGAAATACTCCCTTTTATTAATATTTTTGACTCAGTCTCGATCGATGTCTAGCGATTATGAAATGTAAGATTAAGTTTACAATCAAATCACAAAATTTATATGTCTGAGTGTCATATGACATAATCAAATTACACAAAAGTTGATCAGGATATCTTCAAAGCTAATATTATTACAACATTATTATAATGTTTTTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGAT</genome_strand>
        <mrna_strand>TATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATCGTGATCCCAAAAGGAACATTTCAAATGAACCAAGTGAAATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACGGACCCTAATGCAATCAAGACTGGTGAATGGTTAACAGTCAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710375" ref_strand="+" ref_description="SGN-E710375 [FA55BA01]">
      <seq>caatcgtgatgctgataggctggcaggtgcaatgcaaagaactttgaggtgtgaagctttgcatggagatatctcacaaagccagagggagagaactctatctggtttccgacaaggtcaatttaatgtattggtggccaccgatgttgctgcccgaggacttgatgtacctaatgttgatctggtgatacattacgaacttccgaataattcagagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggagctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttggttcaggccgttctagaagattcggagattcaaatcatgatcgaaacaaccgttcaagccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42432" stop="45103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42750" g_stop="42855" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42856" i_stop="43528" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43529" g_stop="43690" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="346" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44352" g_stop="44803" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="798" r_length="452" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E710375" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42750" e_stop="42855"/>
          <exon e_start="43529" e_stop="43690"/>
          <exon e_start="44352" e_stop="44803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTGGTTGGTCTTTCATGCTTTATTTGCCTAATTATTTAACCATGTTTAAAGCATTTCTTGTTCCTTGTCTTCCCTTCTCTTTCCACTTCATGAAAAGAAAAACCGGGGAGGGAAGATAAGCCTATAAATCTGTATTAGGTACTAAGAAATAGTTACGACTACATACGTCACCTGAGGTAGCAGTTACTATAACATAGATTCACATGTTTAGGGAATCTTAGAAAGTGTAGGACACAAAATTTTAGCGAAATTATGATAAACATATAAGCAGTACCATATAGATTCTTGGGAATTTTAGGATTATCTGGAGAGCATTGTATATGGAAACGAATTTCACACCAATTACAGAGTCATTTTTTAACACCCTTTCAGAAACAAACAAACCCCTTTCAGGATAAGTAAATATTTATCAGTAAGAGAAATATGCACCAAGAGGCACTAAAATGGCATTACAATAGTTGCATGTCTAGTGAGCTTTAAAGGCTGTACAAGGCCTAGTCTGCATTCTTAATCGGGTGATTATTCAATGACAATAAGAAAAAAATGTTTTTTATGAAGTTATCATAAAAGAACGAGAAGAAATGTGTTTATGCTTGAAGTTTTTGTGTCTTCTTTAATTGCAGTTTGCTTTTCTTCTTTTGCTTTCTTAAGTTAAAGTAGAGATATTGGTGCTCAGGTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTT</genome_strand>
        <mrna_strand>AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAAATCATGATCGAAACAACCGTTCAAGCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726305" ref_strand="+" ref_description="SGN-E726305 [LA11BG07]">
      <seq>ccccttatgcaaagaactttgaggtgtgaagctttgcatggagatatctcacaaagccagagggagagaactctatctggtttccgacaaggtcaatttaatgtattggtggccaccgatgttgctgcccgaggacttgatgtacctaatgttgatctggtgatacattacgaacttccgaataattcagagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttaacggagctagctcacgccgctcaggaaagtttggtggtggttcaggagacacacgaggctccaaacgttttgggtggtttccgcaactttggtggttttggaagctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42432" stop="45000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42750" g_stop="42855" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="159" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42856" i_stop="43528" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43529" g_stop="43690" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="321" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44352" g_stop="44700" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="671" r_length="350" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E726305" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42750" e_stop="42855"/>
          <exon e_start="43529" e_stop="43690"/>
          <exon e_start="44352" e_stop="44700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTGGTTGGTCTTTCATGCTTTATTTGCCTAATTATTTAACCATGTTTAAAGCATTTCTTGTTCCTTGTCTTCCCTTCTCTTTCCACTTCATGAAAAGAAAAACCGGGGAGGGAAGATAAGCCTATAAATCTGTATTAGGTACTAAGAAATAGTTACGACTACATACGTCACCTGAGGTAGCAGTTACTATAACATAGATTCACATGTTTAGGGAATCTTAGAAAGTGTAGGACACAAAATTTTAGCGAAATTATGATAAACATATAAGCAGTACCATATAGATTCTTGGGAATTTTAGGATTATCTGGAGAGCATTGTATATGGAAACGAATTTCACACCAATTACAGAGTCATTTTTTAACACCCTTTCAGAAACAAACAAACCCCTTTCAGGATAAGTAAATATTTATCAGTAAGAGAAATATGCACCAAGAGGCACTAAAATGGCATTACAATAGTTGCATGTCTAGTGAGCTTTAAAGGCTGTACAAGGCCTAGTCTGCATTCTTAATCGGGTGATTATTCAATGACAATAAGAAAAAAATGTTTTTTATGAAGTTATCATAAAAGAACGAGAAGAAATGTGTTTATGCTTGAAGTTTTTGTGTCTTCTTTAATTGCAGTTTGCTTTTCTTCTTTTGCTTTCTTAAGTTAAAGTAGAGATATTGGTGCTCAGGTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACG-TTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCA</genome_strand>
        <mrna_strand>AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAACGGAGCTAGCTCACGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCCAAACGTTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701799" ref_strand="+" ref_description="SGN-E701799 [FA16DH09]">
      <seq>ggagagaactctatctggtttccgacaaggtcaatttaatgtattggtggccaccgatgttgctgcccgaggacttgatgtacctaatgttgatctggtgatacattacgaacttccgaataattcagagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggagctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttggttcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtcttcggagatgacaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42459" stop="45128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42759" g_stop="42855" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42856" i_stop="43528" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43529" g_stop="43690" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="259" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44352" g_stop="44828" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="736" r_length="477" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E701799" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42759" e_stop="42855"/>
          <exon e_start="43529" e_stop="43690"/>
          <exon e_start="44352" e_stop="44828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTGGTTGGTCTTTCATGCTTTATTTGCCTAATTATTTAACCATGTTTAAAGCATTTCTTGTTCCTTGTCTTCCCTTCTCTTTCCACTTCATGAAAAGAAAAACCGGGGAGGGAAGATAAGCCTATAAATCTGTATTAGGTACTAAGAAATAGTTACGACTACATACGTCACCTGAGGTAGCAGTTACTATAACATAGATTCACATGTTTAGGGAATCTTAGAAAGTGTAGGACACAAAATTTTAGCGAAATTATGATAAACATATAAGCAGTACCATATAGATTCTTGGGAATTTTAGGATTATCTGGAGAGCATTGTATATGGAAACGAATTTCACACCAATTACAGAGTCATTTTTTAACACCCTTTCAGAAACAAACAAACCCCTTTCAGGATAAGTAAATATTTATCAGTAAGAGAAATATGCACCAAGAGGCACTAAAATGGCATTACAATAGTTGCATGTCTAGTGAGCTTTAAAGGCTGTACAAGGCCTAGTCTGCATTCTTAATCGGGTGATTATTCAATGACAATAAGAAAAAAATGTTTTTTATGAAGTTATCATAAAAGAACGAGAAGAAATGTGTTTATGCTTGAAGTTTTTGTGTCTTCTTTAATTGCAGTTTGCTTTTCTTCTTTTGCTTTCTTAAGTTAAAGTAGAGATATTGGTGCTCAGGTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGAT</genome_strand>
        <mrna_strand>GGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710995" ref_strand="+" ref_description="SGN-E710995 [FA57CE11]">
      <seq>ctggtttccgacaaggtcaatttaatgtattggtggccaccgatgttgctgcccgaggacttgatgtacctaatgttgatctggtgatacattacgaacttccgaataattcagagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcacgaggtggctttagcggagctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42473" stop="44994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42773" g_stop="42855" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42856" i_stop="43528" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43529" g_stop="43690" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="245" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44352" g_stop="44694" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="588" r_length="343" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E710995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42773" e_stop="42855"/>
          <exon e_start="43529" e_stop="43690"/>
          <exon e_start="44352" e_stop="44694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTGGTTGGTCTTTCATGCTTTATTTGCCTAATTATTTAACCATGTTTAAAGCATTTCTTGTTCCTTGTCTTCCCTTCTCTTTCCACTTCATGAAAAGAAAAACCGGGGAGGGAAGATAAGCCTATAAATCTGTATTAGGTACTAAGAAATAGTTACGACTACATACGTCACCTGAGGTAGCAGTTACTATAACATAGATTCACATGTTTAGGGAATCTTAGAAAGTGTAGGACACAAAATTTTAGCGAAATTATGATAAACATATAAGCAGTACCATATAGATTCTTGGGAATTTTAGGATTATCTGGAGAGCATTGTATATGGAAACGAATTTCACACCAATTACAGAGTCATTTTTTAACACCCTTTCAGAAACAAACAAACCCCTTTCAGGATAAGTAAATATTTATCAGTAAGAGAAATATGCACCAAGAGGCACTAAAATGGCATTACAATAGTTGCATGTCTAGTGAGCTTTAAAGGCTGTACAAGGCCTAGTCTGCATTCTTAATCGGGTGATTATTCAATGACAATAAGAAAAAAATGTTTTTTATGAAGTTATCATAAAAGAACGAGAAGAAATGTGTTTATGCTTGAAGTTTTTGTGTCTTCTTTAATTGCAGTTTGCTTTTCTTCTTTTGCTTTCTTAAGTTAAAGTAGAGATATTGGTGCTCAGGTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAA</genome_strand>
        <mrna_strand>CTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCACGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370687" ref_strand="+" ref_description="SGN-E370687 [TUS-28-B20]">
      <seq>agagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgatggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttcttttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggacctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataatttttgcagaagagtttgattcatgccgttctagaagattcggagactcagatcatgatcgaaacaaccgttcaagccgttctgatgttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43258" stop="45115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43690" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44352" g_stop="44815" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="598" r_length="465" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E370687" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43690"/>
          <exon e_start="44352" e_stop="44815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAA-TTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGG</genome_strand>
        <mrna_strand>AGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTTTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTTGCAGAAGAGTTTGATTCATGCCGTTCTAGAAGATTCGGAGACTCAGATCATGATCGAAACAACCGTTCAAGCCGTTCTGATGTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270916" ref_strand="+" ref_description="SGN-E270916 [cLEM-6-D10]">
      <seq>agagatctttgttcatcgatctggtcgaactggacgtgctggtaagaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgatggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttcttttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggacctagctcaggccgctcangaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttgattcaagccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43258" stop="45110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43690" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44352" g_stop="44810" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="592" r_length="459" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E270916" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43690"/>
          <exon e_start="44352" e_stop="44810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTC</genome_strand>
        <mrna_strand>AGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTTTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCANGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAAGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728135" ref_strand="+" ref_description="SGN-E728135 [LA16DC08]">
      <seq>ctcggttaaaaggaagtgccattctcatgcattcctcaaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttaccgagctcccaacaattaaagtagaggctggagcagcacaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtactcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttgggcgagaagtctcttcatcttctgatcgaacaggtggatatagcgcaactgggtcaggaagatcaagaggtggctttagcggagctagctcaggccgctcaggaaagtttggtggtggttcgggagacacacgaggctcacaacgtttgggtggtttccgcaactgtggtggttttggaagctcctaaagttcatatctatcgaataattttgcagaacaggttggttcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtcttcggagatgacaatgatagtggtgaatggtgatcagagttggaggagaactatttctaactctgttgcaaggaggcgtggccactcaatagatgatggtgaagatgaaactccgatatgtgaagtgtgtatgtttattaccaggggctggaaagtaacagccgctgcagatggtgatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43296" stop="45618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43596" g_stop="43690" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44352" g_stop="44882" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="626" r_length="531" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44883" i_stop="45208" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45209" g_stop="45318" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="736" r_length="110" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E728135" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43596" e_stop="43690"/>
          <exon e_start="44352" e_stop="44882"/>
          <exon e_start="45209" e_stop="45318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAGGCAAGTTTCATTCTCTCTATAACAACATATTTTCCGATAATTTTTTGGCTGCTATACGAAAAATGATGTCAAATCTCTCTATAACAACATATTTTCCGATATCTTTTTGGCTGCTATACAAAAAATGATGTTATACTGAGCATATAATATAACACAACATGAAATATTGGTTCCACAAAAAACATGATTGTTATGGTGAAATGTTATAAGAGGTCTGAAAGTATATTTCTGGTCTGATGAATATCATGCTGCCTCCATTATTGGAGGCTTCTAAGGTTATAACTGAAGGATTATATTCTCACATAATGGCTTTGGTTTTGGTTCAGGAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTA</genome_strand>
        <mrna_strand>CTCGGTTAAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGCACAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTACTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGGCGAGAAGTCTCTTCATCTTCTGATCGAACAGGTGGATATAGCGCAACTGGGTCAGGAAGATCAAGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCGGGAGACACACGAGGCTCACAACGTTTGGGTGGTTTCCGCAACTGTGGTGGTTTTGGAAGCTCCTAAAGTTCATATCTATCGAATAATTTTGCAGAACAGGTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAG......................................................................................................................................................................................................................................................................................................................................GAGGCGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGGGCTGGAAAGTAACAGCCGCTGCAGATGGTGATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740153" ref_strand="+" ref_description="SGN-E740153 [LC20BC05]">
      <seq>caaaacagcatagggatgtaaaaggtattgaacatgatgccggatgcagatttacagagctcccaacaattaaagtagaggctggagcagtagaaatgtatagtgaaatgggaaaagatgttggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggagctagctcaggccgctcaggaaagttttgagcctcgtgtgtctcctgaaccacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttggttcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtcttcggagatgacaatgatagtggtgaatggtgatcagagttggaggagaactatttctaactctgttgcaaggaggcgtggccactcaatagatgatggtgaagatgaaactccgatatgtgaagtgtgtatgtttattaccaggtgctgtagagtagcagcagctgcagatggtgatgctacgactcgttacagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttngaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggttgtaatgttcaagagatcatattggtacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43332" stop="45833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43632" g_stop="43690" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44352" g_stop="44882" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="594" r_length="535" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44883" i_stop="45208" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45209" g_stop="45533" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="919" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E740153" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43632" e_stop="43690"/>
          <exon e_start="44352" e_stop="44882"/>
          <exon e_start="45209" e_stop="45533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGGTAAGGATGCTTAAGCCTTGCAGTTTTTCTTTTTAATCCTCACTTGGATTTGTTGTCATTTTCACACATATGGAGATAGGAGAGTGCAATAGATGCATGTTCCTATGCTCGTGTCTGGTAATCATATAATGATTTGGTTCTAGGGTGTTGTTTAGTTTGAGGTGTAAGCCAATATAAACTTGGTATGCAAATCGGTATTACTTTATACCATGTTTGGTTTCCAGTTTTAAAATCCATATTCCACCTTCTATCCAATATAAAATAATATATAAATTCCCGTACAATTTAAGCCCATATTAGTTACACCGTGTTTGGTTTCTGGTATTATAATCTGCATAAGTTGTGACAATCTTTGGTATTTCTAATTTTCTTGAATTGCTGAAGTCGAAGACGAGCCTGTTACCGTATCTTGAACTGAAAGTCATTTGGGTTTTGGGCTGACATATTTTTCAGTTCCTCGATACTCACATCTAATAGTTCTTGATGGTTGATCTCCTAAATTCAAATCTTAAATATGGAAAATTCGCTAGCTGGTAGTGACCGGACTTCTCTCCTTTATAATGCTGACAGTTTTTCCCTGTTCTTTCTTGCCATGCTACTCTGATATACAGAATTGTTGTTCTCATCAAATTATCTTTTTGCATGTACTTGCTGAAAAAAGCTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAG-TTTG-G--TGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAGGCAAGTTTCATTCTCTCTATAACAACATATTTTCCGATAATTTTTTGGCTGCTATACGAAAAATGATGTCAAATCTCTCTATAACAACATATTTTCCGATATCTTTTTGGCTGCTATACAAAAAATGATGTTATACTGAGCATATAATATAACACAACATGAAATATTGGTTCCACAAAAAACATGATTGTTATGGTGAAATGTTATAAGAGGTCTGAAAGTATATTTCTGGTCTGATGAATATCATGCTGCCTCCATTATTGGAGGCTTCTAAGGTTATAACTGAAGGATTATATTCTCACATAATGGCTTTGGTTTTGGTTCAGGAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGC</genome_strand>
        <mrna_strand>CAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTTTTGAGCCTCGTGTGTCTCCTGAACCACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAG......................................................................................................................................................................................................................................................................................................................................GAGGCGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTNGAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292506" ref_strand="+" ref_description="SGN-E292506 [cLET-16-H4]">
      <seq>agaaatgtatagtgaaatgggaaaagatgatggccgctttggttcctctggaggaggcactatgcgtagtcgatctagtgattttggtggaggccgttctggtggctatggaaataagagcagcaagtttggtcgagaagtctcttcatcttctgttcgaacaggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggacctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttgattcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44084" stop="45098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44384" g_stop="44798" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E292506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44384" e_stop="44798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGC</genome_strand>
        <mrna_strand>AGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370686" ref_strand="+" ref_description="SGN-E370686 [TUS-28-B20](-)">
      <seq>caggtggatatagcgcaactggttcaggaagatcaagaggtggctttagcggacctagctcaggccgctcaggaaagtttggtggtggttcaggagacacacgaggctcaaaacgtttgggtggtttccgcaactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttgattcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtcttcggagatgacaatgatagtggtgaatggtgatcagagttggaggagaactatttctaactctgttgcaaggaggtgtggccactcaatagatgatggtgaagatgaaactccgatatgtgaagtgtgtatgtttattaccaggtgctgtagagtagcagcagctgcagatggtgatgctacgactcgttacagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggttgtaatgttcaagagatcatattggtacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtttatgaggatgtattcaatttgttaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44245" stop="45930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44545" g_stop="44882" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44883" i_stop="45208" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45209" g_stop="45630" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="759" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E370686" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44545" e_stop="44882"/>
          <exon e_start="45209" e_stop="45630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAGGCAAGTTTCATTCTCTCTATAACAACATATTTTCCGATAATTTTTTGGCTGCTATACGAAAAATGATGTCAAATCTCTCTATAACAACATATTTTCCGATATCTTTTTGGCTGCTATACAAAAAATGATGTTATACTGAGCATATAATATAACACAACATGAAATATTGGTTCCACAAAAAACATGATTGTTATGGTGAAATGTTATAAGAGGTCTGAAAGTATATTTCTGGTCTGATGAATATCATGCTGCCTCCATTATTGGAGGCTTCTAAGGTTATAACTGAAGGATTATATTCTCACATAATGGCTTTGGTTTTGGTTCAGGAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAA</genome_strand>
        <mrna_strand>CAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAG......................................................................................................................................................................................................................................................................................................................................GAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTT-AATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713513" ref_strand="+" ref_description="SGN-E713513 [FB08DD06]">
      <seq>cgctactttggtggttttggaagctccaaaagttcaaatcgatcgaataattttgcagaagagtttggttcaggccgttctagaagattcggagattcagatcatgatcgaaacaaccgttcaagccgttttgatgtcttcggagatgacaatgatagtggtgaatggtgatcagagttggaggagaactatttctaactctgttgcaaggaggcgtggccactcaatagatgatggtgaagatgaaactccgatatgtgaagtgtgtatgtttattaccaggtgctgtagagtagcagcagctgcagatggtgatgctacgactcgttacagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggttgtaatgttcaagagatcatattggtacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtttatgaggatgtattcaatttgttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44373" stop="45933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44673" g_stop="44882" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44883" i_stop="45208" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45209" g_stop="45634" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="636" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E713513" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44673" e_stop="44882"/>
          <exon e_start="45209" e_stop="45634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAGGCAAGTTTCATTCTCTCTATAACAACATATTTTCCGATAATTTTTTGGCTGCTATACGAAAAATGATGTCAAATCTCTCTATAACAACATATTTTCCGATATCTTTTTGGCTGCTATACAAAAAATGATGTTATACTGAGCATATAATATAACACAACATGAAATATTGGTTCCACAAAAAACATGATTGTTATGGTGAAATGTTATAAGAGGTCTGAAAGTATATTTCTGGTCTGATGAATATCATGCTGCCTCCATTATTGGAGGCTTCTAAGGTTATAACTGAAGGATTATATTCTCACATAATGGCTTTGGTTTTGGTTCAGGAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAG</genome_strand>
        <mrna_strand>CGCTACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAG......................................................................................................................................................................................................................................................................................................................................GAGGCGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241779" ref_strand="+" ref_description="SGN-E241779 [cLEE-10-I7]">
      <seq>ggtgtggttacttaatagatgatggtgaagatgaaactccgatatgtgaagtgtgtatgtttattaccaggtgctgtagagtagcagcagctgcagatggtgatgctacgactcgttacagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggctgtaatgttcaagagatcatattggtacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtctatgaggatgtattcaatttgttgaatcaaacaggtgaaaaggcttatattgaaagtatattgtttctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44911" stop="45973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45211" g_stop="45673" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E241779" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45211" e_stop="45673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTATATTGTTTTTCTTTT</genome_strand>
        <mrna_strand>GGTGTGGTTACTTAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGCTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTCTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTATATTGTTTCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266619" ref_strand="-" ref_description="SGN-E266619 [cLEI-5-I7]">
      <seq>gtgtgtatgtttattaccaggtgctgtaaagtagcagcagctgcagatggtgatgttacgactcgttacagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggttgtaatgttcaagagatcatattggtacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtttatgaggatgtattcaatttgttgaatcaaacaggtgaaaaggcttatattgaaagtacattgtttttctttcgcacttgtaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44961" stop="45986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45261" g_stop="45686" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="445"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E266619" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266619" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45261" e_stop="45686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTATATTGTTTTTCTTTTGCACTTGTAAATA</genome_strand>
        <mrna_strand>GTGTGTATGTTTATTACCAGGTGCTGTAAAGTAGCAGCAGCTGCAGATGGTGATGTTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTACATTGTTTTTCTTTCGCACTTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219846" ref_strand="+" ref_description="SGN-E219846 [cLEL-24-I15](-)">
      <seq>tgtgtatgtttatttccaggtgctgtagagtagcagcagctgcagatggtgatgctacgactcgtttcagtagaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgttttttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacctgctagtgatagtggttgtaatgttcaaaagatcatattgggacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtttatgaggatgtattcaatttgttgaatcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44962" stop="45933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45262" g_stop="45634" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E219846" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45262" e_stop="45634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAG</genome_strand>
        <mrna_strand>TGTGTATGTTTATTTCCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTTCAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTTTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACCTGCTAGTGATAGTGGTTGTAATGTTCAAAAGATCATATTGGGACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219894" ref_strand="+" ref_description="SGN-E219894 [cLEL-24-I15](-)">
      <seq>tgtgtatgtttattaccaggtgctgtagagtagcagcagctgcaaatggtgatgctacgactcgttacagtaaaaaataacacttcaacatccacttggtctccaaaggtacctacacgctatatgtaaccgatagctaccaagttctcaccattgctggcgttatgtttcttcgctgtatgcttgaaataaatattttttttgcaagagatcatattggtacttgctagtgatagtggttgtaatgttcaagagatcatattggtacttgctagtgatagtggttgtaatgttcagtataaattttgaacagaccttgatcttattatttaaccagtttatgaggatgtattcaatttgttgaatcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44962" stop="45933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45262" g_stop="45634" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E219894" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45262" e_stop="45634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAG</genome_strand>
        <mrna_strand>TGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAAATGGTGATGCTACGACTCGTTACAGTAAAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209773" ref_strand="+" ref_description="SGN-E209773 [cLEC-52-F21]">
      <seq>tttcattctgtattatatcaccttcacaacaggttgtctcaggggagtcaggtccagaaataatgaaaataaaattaaggacaaagctactagaagaattgcagggactgtttcccacaacagtcatgcctcccgaaaaaagattgatccatctggttgaacaggggcttgaatttcaactgggatcttgttctcttcacaactcattaagcaatgacatgtcattgctcactgatcaccattgtggaatagataagattccatctcagactttgcagatattagaaggacacaaagatgaagtctggtttttggagttctctcataacgggaagtgtttggcctcgtcatctgctgattgttcagtaattatatgggaggtgaagttggatggaaggttatgcttgaagcacaaagttattggtcatgaggagcctgtgtgctttgtatcatggagccctgatgatagtcagcttctcacctgtggcctggaagaggtcgttagactgtgggatgtagactccggtgagtgtatacgtctttatgagaaaaatggtcttggttttatttcgtgtggatgggctccagatggggaaaggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51131" stop="48217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50831" g_stop="50554" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50553" i_stop="49620" i_length="934">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49619" g_stop="49518" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="380" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49517" i_stop="48741" i_length="777">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48740" g_stop="48517" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="604" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-E209773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50831" e_stop="50554"/>
          <exon e_start="49619" e_stop="49518"/>
          <exon e_start="48740" e_stop="48517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAGGTTAGATCATATTTGAGTCTTGATACTTGTTTAACCTGCAAGCATTATCATTCCAGGATTGGTTGTCTGTCAATTGCATTATTAATCACCTTATAACTTATTCCATCTGTGTTTAAGTTTATATATCAGTGATATGTCTGAGGTGATGTGTTGATGAAGTGTTGAGTTTGTGCTTTCTATTGTGTAAAATTTTGGTTATTCCATATTTGGTTATGCTGTCATTGTGTCGATTGTGTTTTTCCTATATTTTATTCAGCAAAAGTACAAGTATGTGTATAAGGAATAAGTAGAATTTATCAAATTTTATCTACTCTAGACCTCTTTTGTGTCTGTGATAGAAGTCTAGGCATATTGCTGTCTACTCAACGATAATCCTTCTACGATACTGTAATATTCCTTCCTTGCCTTTGCTGGAATGGAGGGAAAATGTGAAGTCCAAGATTCATATAGTAAACTACGTGTACAGTGCCGATAGATGAGAACTACACAGTTATTCCACTTTATTGTTCTTTTCCTTCATTCTTTCATATTGGATTCATGGTTTAGATGTTCTAGATTTGAATGAGACCTGTCGAAGTGGGTTGTTGATTATCTTCCGTAGATATCAAAAAGGATGTATGCCCATGTATTTCCCCGTCCTTGCAGATTATGCAGAAAAGTTTGATATGTGACGACTTGGTTTGAGTTTTTCTTGTAGTGTCCTTGTATAGAGCTTGATTGCATGTATTCCTCATACACAGGCTTTTTTTCCTTCTTCCAACAATAATATCATTGAATTTGACTATGATTGGTAGAAGGGCTTAGATCATTTTTTTGGTTTTTGAGAATGAAGGGGTTTAGTCAATTATTGAAAGCTGAGAGTAAAAGAAATAAGAGAGGGGTTTATTGATCACGCTGAGCTCTAATCCTTTCTTCATTGTTTGTCGTGCACCAGATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAGGTAAGTTTAATTGCTCTTAAGTATTGCTCAACAGATTTTTGCTTTATCAAAGGTCCTCTTGACTAATGCTTGTTATATCCTTTATTATTTATTTTAATTAAACTTTTCTCCATTGAATTTCTTCTCTCTTTGCACCCGGTGCCATAATTTTCTTGCATGATCTTTATCCTTTAACTAATAATTTCAGAAAAAAGTTGCACTATTTTTGCTTCACTTTTCCATGCTGTGCCACAAATGAAATGTTTCTTTTTTGTAGATTCCACTGATGTATCTTTAGTATGACAGTAGAAAGTCCTTTGTCCATTTCTATTACTGATAAACCTTTAGTGAGAGTAGCTCCTCTTCCGCTCTAGAACTCTAACAATACCAACTTCTTTCTTTTTCGTCATCACACTAGCTATCTTTCCTTATTCCTTTCTGATTGTGTTCTTTCCCATGTTAGTCTTAACGAGATAACCATATCCTCAGCTATTTTTACCAATACATCTTTATGATCAAGTCTTGCTTCCCAAATGATTCTCAATTTATTCATATTTTATCCTACAATACCATTTAAACATTGTGTAACATTCATTCTCCGACCTAAAGAATCCTGCTATAGGTGTATATGATTTTGGTAAAAGATCTAAACAGATGGGTTTTCTGGTTCTCTTTCCCAGGGGTAGGTAGTTCAGAGAACAAGGGAAAAGTGAGCTGTTATTGCTGAAAAACTAAATTTTAATGGTAGATTTGACTGACGATTTATGTTGACCTCTCAATTATTTTGCCCTTCTGCAGGTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</genome_strand>
        <mrna_strand>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369938" ref_strand="+" ref_description="SGN-E369938 [TUS-26-D21]">
      <seq>tttaacttggtattagcaggcttgaacttctggaagtcttaaatcttacaaatctgaataggtgtaccttggcatcgacaccttcccagtttcattctgttaggctagtgaatttatccctgcaagctttgtaacactgaagcaaattatgaagatatttgttatttgtcttctatttcatttttaaagtgtttgcaattttctttctctacaaattcgcatttattttcagattcagtctatactctatagtggattcatgcccaagcatattcttttttcatgcctttttcggtaattaaggttgagagtttttgcagcttcgcttgaacagtgatggccatatcactggcactgagtatttgtcagaccttgttgagaaggaacgtgaagctcataaacatgatgtgcacaaagaacatcatgaagattcagacaagatccatctacagggcattgatgaagaatctcagaatatgatcaagaaggttaagcaagcattggctgatggggaaggatgcagggtgtatggagtattagatgtccagcgggttgctgggaatttccatttatccgttcatgggttgaacatttttgttgctcaaatgatttttgaaaagtctactcatgtcaatgtaagccatatcatccatgatttattatttgggcccaaatttccaggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59130" stop="61646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59430" g_stop="59834" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60207" g_stop="60325" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60497" g_stop="60580" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="608" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60581" i_stop="61271" i_length="691">
            <donor d_prob="0.209" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61272" g_stop="61348" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="685" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E369938" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59430" e_stop="59834"/>
          <exon e_start="60207" e_stop="60325"/>
          <exon e_start="60497" e_stop="60580"/>
          <exon e_start="61272" e_stop="61348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATGGTAATGCTTTTGGTTCTTCTGCATTTGGGTAGTAGCATTAGTTTAACTCTCTGCTGCTCTTTATCCAAGTCCAAGTTGTATGCTGGTATGCTTTTGCCTTAACCTGCTTAGTGTGGCCTTTGCCGTTGATCATGTTAATGTTAATTTCTTGACAAATATAAAGAGCTTTGGTTAAACCTTAGCGACTTTTATCAAAATCCTGTCTTTCTGGAATCGGATAAATGGATTTAACTTACAAAGCGCAAATAACTTGAGAAATTCCATTTGTATGGATATATCAGTTGATTAGTTTGTGATCTAGCTTGCATAACACAACTGAGTATTAGTCTCCTACAAATTGATAACATGGTTTTAAGTAACAATTTTTACCAGATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGGGTATTTGTTTTGGTTGCTTTGTATTATGTTTGTTCTCATACCTGTGATTCCATTCCCCCTGCCCCCACCCCCGGTATCCTTTTCACTTTGGGCCTAAAATATGCTGCCACTTTGGCTAACTATACGCTATAGCAGTGTCGCACCAACTGATACCTACATTGTTGCGTGCAGGTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGATATTTTATATTTATAGATTTGATGAGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATAGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCAGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTGCTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTAGAGAGAAATTAGCAATACCATAGTAAGTAAGTTGTACAGTAAGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGCAATACCATAGTTCCTAAGTTGGTCTGAGTGCAGAAGCTGATTTTCATTTTTATTTTAATCCATATTCTGAAGTACATGAAGTTCTATTCAAAGGTTGCATTTACAGCAGCGTTCAGAGAATAGCTTTTGAAGTAATACTTTTTCTCTTCTTCCAGAGTATTTGCTCACTCTTAGTTTCATCCTTTGGAAATGCAGATTTTTGAAAAGTCTACTCATGTCAATGTAAGCCATATCATCCATGATTTATCATTTGGGCCCAAATATCCAGGTAT</genome_strand>
        <mrna_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG....................................................................................................................................................................................................................................................................................................................................................................................ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG...........................................................................................................................................................................GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAAAGTCTACTCATGTCAATGTAAGCCATATCATCCATGATTTATTATTTGGGCCCAAATTTCCAGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259060" ref_strand="+" ref_description="SGN-E259060 [cLEG-41-E16]">
      <seq>tttaacttggtattagcaggcttgaacttctggaagtcttaaatcttacaaatctgaataggtgtaccttggcatcgacaccttcccagtttcattctgttaggctagtgaatttatccctgcaagctttgtaacactgaagcaaattatgaagatatttgttatttgtcttctatttcatttttaaagtgtttgcaattttctttctctacaaattcgcatttattttcagattcagtctatactctatagtggattcatgcccaagcatattcttttttcatgcctttttcggtaattaaggttgagagtttttgcagcttcgcttgaacagtgatggccatatcactggcactgagtatttgtcagaccttgttgagaaggaacgtgaagctcataaacatgatgtgcacaaagaacatcatgaagattcagacaagatccatctacagggcattgatgaagaatctcagaatatgatcaagaaggttaagcaagcattggctgatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59130" stop="60614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59430" g_stop="59834" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60207" g_stop="60314" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="513" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E259060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59430" e_stop="59834"/>
          <exon e_start="60207" e_stop="60314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATGGTAATGCTTTTGGTTCTTCTGCATTTGGGTAGTAGCATTAGTTTAACTCTCTGCTGCTCTTTATCCAAGTCCAAGTTGTATGCTGGTATGCTTTTGCCTTAACCTGCTTAGTGTGGCCTTTGCCGTTGATCATGTTAATGTTAATTTCTTGACAAATATAAAGAGCTTTGGTTAAACCTTAGCGACTTTTATCAAAATCCTGTCTTTCTGGAATCGGATAAATGGATTTAACTTACAAAGCGCAAATAACTTGAGAAATTCCATTTGTATGGATATATCAGTTGATTAGTTTGTGATCTAGCTTGCATAACACAACTGAGTATTAGTCTCCTACAAATTGATAACATGGTTTTAAGTAACAATTTTTACCAGATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGG</genome_strand>
        <mrna_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG....................................................................................................................................................................................................................................................................................................................................................................................ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252008" ref_strand="+" ref_description="SGN-E252008 [cLEG-8-M21]">
      <seq>tttaacttggtattagcaggcttgaacttctggaagtgttaaatcttacaaatctgaataggtgtaccttggcatcgacaccttcccagtttcattctgttaggctagtgaatttatccctgcaagctttgtaacactgaagcaaattatgaagatatttgttatttgtcttctatttcatttttaaagtgtttgcaattttctttctctacaaattcgcatttattttcagattcagtctatactctatagtggattcatgcccaagcatattcttttttcatgcctttttcggtaattaaggttgagagtttttgcagcttcgcttgaacagtgatggccatatcactggcactgagtatttgtcagaccttgttgagaaggaacgtgaagctcataaacatgatgtgcacaaagaacatcatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59130" stop="60532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59430" g_stop="59834" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60207" g_stop="60232" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="431" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E252008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59430" e_stop="59834"/>
          <exon e_start="60207" e_stop="60232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATGGTAATGCTTTTGGTTCTTCTGCATTTGGGTAGTAGCATTAGTTTAACTCTCTGCTGCTCTTTATCCAAGTCCAAGTTGTATGCTGGTATGCTTTTGCCTTAACCTGCTTAGTGTGGCCTTTGCCGTTGATCATGTTAATGTTAATTTCTTGACAAATATAAAGAGCTTTGGTTAAACCTTAGCGACTTTTATCAAAATCCTGTCTTTCTGGAATCGGATAAATGGATTTAACTTACAAAGCGCAAATAACTTGAGAAATTCCATTTGTATGGATATATCAGTTGATTAGTTTGTGATCTAGCTTGCATAACACAACTGAGTATTAGTCTCCTACAAATTGATAACATGGTTTTAAGTAACAATTTTTACCAGATGTGCACAAAGAACATCATGAAGAT</genome_strand>
        <mrna_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTGTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG....................................................................................................................................................................................................................................................................................................................................................................................ATGTGCACAAAGAACATCATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698938" ref_strand="+" ref_description="SGN-E698938 [FA08AC06]">
      <seq>gaatctcataaacatgatgtgcacaaagaacatcatgaagattcagacaagatccatctacagggcattgatgaagaatctcagaatatgatcaagaaggttaagcaagcattggctgatggggaaggatgcagggtgtatggagtattagatgtccagcgggttgctgggaatttccatttatccgttcatgggttgaacatttttgttgctcaaatggtcagctctgttggtattttatatttatagatttgatgggaatacatataactgttggaaagcatgcactattgcattgaactctgtcctattgtaagatatctatcaggtcaaattgtgtaagcagttgtgatccttaaaattagggcggtatagttggaagatgcttaaaagagtttgtttaagaaactagatcaataaccctcccgatggtgggagaggtagacagttctttccgtcagcttccggtgttctatcaagtaatatattggtggttcaagtaaagtgaaagctctgattcaatcaaacttgctacttattttgagcttatgcatgacaaaaggttgattgctctaaagctacttttctgattttgccttgtattttgatctatgatagtttgtgaaaaaaagtacagagaaattagcaataccatactaaagtaagttgtacagtacgtttctagatagtttgtgaaacaagtttagagaaattagtaataccatagttcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-cA1uP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59900" stop="61393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60207" g_stop="60325" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="135" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60497" g_stop="61093" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="734" r_length="599" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-E698938" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60207" e_stop="60325"/>
          <exon e_start="60497" e_stop="61093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGGGTATTTGTTTTGGTTGCTTTGTATTATGTTTGTTCTCATACCTGTGATTCCATTCCCCCTGCCCCCACCCCCGGTATCCTTTTCACTTTGGGCCTAAAATATGCTGCCACTTTGGCTAACTATACGCTATAGCAGTGTCGCACCAACTGATACCTACATTGTTGCGTGCAGGTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGATATTTTATATTTATAGATTTGATGAGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATAGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCAGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTG-CTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTAGAGAGAAATTAGCAATACCATAGT-AAGTAAGTTGTACAGTAAGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGCAATACCATAGTTCCTAA</genome_strand>
        <mrna_strand>ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG...........................................................................................................................................................................GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGGTATTTTATATTTATAGATTTGATGGGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATGGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCGGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTGCCTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTACAGAGAAATTAGCAATACCATACTAAAGTAAGTTGTACAGTACGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGTAATACCATAGTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>66</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3418" PGL_stop="46"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3418" e_stop="3304"/>
            <exon e_start="374" e_stop="46"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.388" e_score="0.974"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="3418" e_stop="3304" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.388">
            <gDNA_intron_boundary i_start="3303" i_stop="375" i_length="2929"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="374" e_stop="46" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3418" stop="3304"/>
              <exon start="374" stop="46"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTCCAAGTCAATGAACAGCTACCCTTTTTGAGTTTCTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAG : GATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGTTGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTTTCTAGTTTACCAAAGGACTCAGATGCAAAATCATGTGGATCAGAAT</gDNA_template>
            <first_frame> L  V  Q  V  N  E  Q  L  P  F  L  S  F  S  V  G  *  *  E  G  I  K  E  T  P  G  E  N  W  G  K  I  E  Q  E  E  E  E   : G  *  W  V  P  L  K  K  R  Q  Q  M  K  F  S  L  R  I  *  S  R  S  R  T  L  T  L  Q  P  A  N  *  S  *  K  L  M  L  F  L  V  N  C  R  R  G  *  V  N  V  I  K  R  L  M  C  H  N  P  I  K  K  L  F  L  F  L  E  Y  K  I  T  S  Q  K  M  C  G  S  N  R  L  L  R  V  R  L  M  H  L  D  L  V  N  F  L  V  Y  Q  R  T  Q  M  Q  N  H  V  D  Q  N </first_frame>
            <second_frame>  W  S  K  S  M  N  S  Y  P  F  *  V  S  L  L  V  D  K  K  E  S  K  K  P  Q  V  K  I  G  A  K  L  S  R  R  K  K  K  :  D  N  G  Y  P  *  R  R  G  N  R  *  S  F  L  *  E  F  R  A  E  A  G  P  *  P  C  N  Q  Q  I  R  V  K  S  *  C  C  F  W  *  T  A  E  E  A  E  S  M  *  *  R  D  *  C  V  T  I  Q  S  R  S  Y  F  S  F  W  S  T  R  *  P  V  R  K  C  A  E  A  T  G  C  *  E  *  G  *  C  I  W  I  *  S  T  F  *  F  T  K  G  L  R  C  K  I  M  W  I  R   </second_frame>
            <third_frame>   G  P  S  Q  *  T  A  T  L  F  E  F  L  C  W  L  I  R  R  N  Q  R  N  P  R  *  K  L  G  Q  N  *  A  G  G  R  R  R :   I  M  G  T  P  K  E  E  A  T  D  E  V  F  S  E  N  L  E  Q  K  P  D  P  D  P  A  T  S  K  L  E  L  K  A  D  V  V  S  G  E  L  Q  K  R  L  S  Q  C  D  K  E  I  N  V  S  Q  S  N  Q  E  A  I  S  L  S  G  V  Q  D  N  Q  S  E  N  V  R  K  Q  Q  V  V  K  S  E  A  D  A  S  G  S  S  Q  L  S  S  L  P  K  D  S  D  A  K  S  C  G  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3320" stop="3304"/>
                    <exon start="374" stop="47"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGGRRRIMGTPKEEATDEVFSENLEQKPDPDPATSKLELKADVVSGELQKRLSQCDKEINVSQSNQEAISLSGVQDNQSENVRKQQVVKSEADASGSSQLSSLPKDSDAKSCGSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6991" PGL_stop="13077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6991" e_stop="7411"/>
            <exon e_start="7764" e_stop="7989"/>
            <exon e_start="8293" e_stop="9484"/>
            <exon e_start="12665" e_stop="13077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6991" e_stop="7411" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="7412" i_stop="7763" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7764" e_stop="7989" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8293" e_stop="9484" e_length="1192"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="9485" i_stop="12664" i_length="3180"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="12665" e_stop="13077" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6991" stop="7411"/>
              <exon start="7764" stop="7881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7131" stop="7411"/>
              <exon start="7764" stop="7989"/>
              <exon start="8293" stop="9484"/>
              <exon start="12665" stop="13077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7862" stop="7989"/>
              <exon start="8293" stop="8726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7866" stop="7989"/>
              <exon start="8293" stop="8620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7866" stop="7989"/>
              <exon start="8293" stop="8505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7866" stop="7989"/>
              <exon start="8293" stop="8466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7890" stop="7989"/>
              <exon start="8293" stop="8508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8364" stop="8857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAG : GAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG : GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAG : GAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAATTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</gDNA_template>
            <first_frame> I  N  L  I  I  K  I  K  T  F  *  K  G  *  I  N  L  L  L  L  S  *  C  V  K  N  L  E  E  K  R  *  N  L  E  K  R  T  V  G  T  E  K  *  R  G  L  I  *  R  R  K  N  I  A  L  G  S  S  Y  C  A  S  S  V  D  L  I  D  L  G  D  F  V  K  W  V  L  F  K  R  *  I  L  D  L  C  I  C  *  F  F  F  Y  E  K  S  L  M  K  S  F  F  I  V  G  V  V  L  I  R  L  V  *  L  N  L  I  I  I  G  S  V  T  D  C  C  V  S  L  K  L  F  I  I  L  H  S  K  K   : G  K  C  K  L  I  L  V  S  Y  S  L  V  G  F  H  G  T  Q  T  T  S  V  *  R  S  I  L  V  L  M  G  R  L  *  K  L  *  L  *  R  I  G  L  L  A  V  L  V  V  S  V  L  W  S  L  L  I  L  L  L  L  R  G  *  *  R  R  N  T  T  L  M  A  G  W :   *  K  Q  R  G  Q  F  H  G  M  T  R  A  R  Q  V  E  A  V  L  V  F  M  V  L  L  V  L  V  Q  D  V  Q  E  R  F  S  L  V  V  *  H  P  L  S  L  R  L  P  L  S  S  I  L  S  N  L  E  Q  S  Q  M  Q  *  L  C  M  I  I  T  L  K  G  L  G  D  L  D  S  S  L  M  I  Q  R  M  Q  W  I  K  S  C  S  S  L  T  M  S  *  M  I  K  W  L  R  S  S  A  L  F  P  K  S  Y  P  Q  V  L  A  K  V  H  L  V  G  T  A  M  D  *  I  G  *  I  T  S  L  M  G  M  H  R  D  T  L  Q  I  Q  L  E  D  M  E  S  V  W  M  V  D  L  A  P  S  L  G  V  G  V  S  L  L  H  L  V  L  V  M  V  W  V  L  T  L  N  Q  V  *  A  Q  D  M  V  V  V  Q  M  L  T  V  V  *  A  M  D  G  D  *  I  H  I  I  A  Q  A  D  L  V  V  A  L  G  L  T  E  E  V  G  E  E  T  L  L  S  *  T  Q  Q  I  A  I  Y  G  V  M  E  D  C  T  M  G  R  P  R  Q  A  L  A  T  F  *  Y  L  E  V  V  E  T  L  E  E  E  A  L  A  T  V  E  F  G  V  H  Q  F  P  L  K  A  G  E  M  F  L  A  K  M  E  I  S  D  M  *  M  V  T  A  Y  M  G  W  Q  E  A  M  A  E  T  S  Q  N  V  E  P  L  C  H  Q  D  P  G  V  V  M  M  G  A  L  *  L  I  Y  M  V  V  V  W  D  M  M  I  T  L  G  V  L  Q  I  L  S  R  M  Q  P  V  L  L  V  M  D  *  A  M  D  L  L  T  C  H  L  K  V  L  Q  V  M  L  V  V  M  E  L  A  I  D  N  Q  T  E  :  E  W  T  A  R  R  M  S  R  I  K  A  V  I  V  R  E  I  F  F  R  L  S  *  I  M  N  F  E  Y  F  H  K  L  Y  K  T  *  E  E  L  D  F  L  L  *  G  T  W  K  C  L  L  F  E  G  L  E  I  E  L  C  K  T  L  C  F  K  M  I  I  F  F  F  L  S  Y  V  L  E  I  S  S  F  F  S  S  S  S  K  V  *  N  Q  I  A  A  A  A  I  H  T  K  E  I  D  S  L  F  L  H  K  I  F  I  F  H  V  F  A  V  N  A  S  N  V  M  *  C  F  L  Y  Y  L  L  R  L   </first_frame>
            <second_frame>  L  I  *  S  S  K  S  K  L  F  K  R  V  E  S  I  C  Y  C  Y  H  S  V  *  K  I  L  K  K  K  D  K  I  L  K  K  E  Q  W  E  Q  K  S  K  E  G  *  Y  R  G  G  R  T  S  P  S  V  L  V  T  V  P  P  L  *  I  L  L  I  W  V  I  L  L  N  G  Y  C  S  K  D  R  F  L  I  C  V  F  V  N  F  F  F  M  K  K  V  *  *  N  H  F  S  L  L  G  L  F  *  S  V  *  F  D  *  I  *  *  L  L  D  Q  L  Q  I  V  V  C  L  *  S  S  S  L  Y  F  T  V  K  K  :  E  N  A  S  *  S  W  *  V  I  R  W  W  D  F  M  G  H  R  R  R  A  S  E  G  V  F  *  Y  L  W  G  G  C  R  S  C  N  Y  E  G  *  D  Y  W  P  C  S  W  F  R  F  C  G  L  C  *  S  C  C  C  *  E  G  S  K  G  E  T  Q  H  *  W  Q  D   : G  R  S  K  E  G  S  S  T  G  *  P  E  H  D  K  *  K  Q  S  *  Y  S  W  F  S  *  S  W  S  R  T  Y  K  K  D  F  R  W  W  F  S  I  H  C  H  *  D  C  L  *  A  V  F  *  A  I  W  N  N  H  R  C  S  S  Y  V  *  S  *  H  S  K  A  *  G  I  W  I  H  H  L  *  F  R  G  C  S  G  *  S  L  A  Q  V  L  P  *  A  E  *  *  N  G  *  G  Q  A  R  C  S  Q  R  V  I  P  R  S  *  P  K  S  T  W  S  V  Q  L  W  I  K  *  D  E  *  L  P  *  W  V  C  T  G  I  L  S  K  Y  S  W  R  I  W  S  R  Y  G  W  *  I  *  P  H  H  W  G  *  E  C  L  Y  S  I  W  F  W  L  W  Y  G  S  *  L  *  T  R  S  E  P  R  I  W  W  *  C  K  C  *  Q  *  F  K  L  W  T  G  T  E  S  I  L  *  L  K  Q  T  W  W  W  H  W  V  *  R  R  K  W  G  R  K  H  F  F  L  K  L  S  K  S  Q  F  M  G  *  W  R  T  A  P  W  D  D  L  D  K  L  *  Q  L  F  S  I  W  K  W  W  K  H  W  R  R  K  L  *  Q  Q  W  S  L  G  F  I  N  F  L  S  R  R  G  K  C  F  *  Q  K  W  K  S  R  I  C  E  W  *  Q  H  I  W  D  G  R  R  L  W  Q  K  R  H  K  T  W  S  R  Y  A  I  R  I  Q  G  *  L  *  W  G  P  F  S  *  F  I  W  *  W  F  G  I  *  *  S  H  L  A  S  F  K  F  *  A  G  C  N  R  F  S  W  L  W  T  R  Q  W  T  F  *  H  V  T  S  K  Y  F  R  L  C  W  *  L  W  S  W  Q  *  T  T  K  Q  R :   N  G  R  L  G  E  C  L  E  S  R  L  L  *  Y  A  R  S  F  S  V  *  V  E  S  *  I  L  N  I  S  T  N  Y  I  K  L  K  K  S  W  T  S  F  C  R  G  L  G  N  A  C  F  L  K  V  *  R  *  N  F  A  R  H  F  V  L  K  *  *  F  F  F  F  *  V  M  F  *  K  F  P  L  F  F  P  L  Q  V  R  C  K  I  K  L  Q  L  Q  Q  Y  I  Q  R  K  *  T  V  Y  F  C  T  K  F  L  Y  S  M  F  L  L  *  T  R  R  M  L  C  N  A  F  S  I  I  C  Y  V  F  </second_frame>
            <third_frame>   *  F  N  H  Q  N  Q  N  F  L  K  G  L  N  Q  S  V  I  V  I  I  V  C  K  K  S  *  R  K  K  I  K  S  *  K  K  N  S  G  N  R  K  V  K  R  A  N  I  E  E  E  E  H  R  P  R  F  *  L  L  C  L  L  C  R  S  Y  *  F  G  *  F  C  *  M  G  I  V  Q  K  I  D  S  *  F  V  Y  L  L  I  F  F  L  *  K  K  F  D  E  I  I  F  H  C  W  G  C  F  D  P  F  S  L  I  E  S  D  N  Y  W  I  S  Y  R  L  L  C  V  S  E  A  L  H  Y  T  S  Q  *  K  R :   K  M  Q  V  D  L  G  K  L  F  V  G  G  I  S  W  D  T  D  D  E  R  L  K  E  Y  F  S  T  Y  G  E  V  V  E  A  V  I  M  K  D  R  T  T  G  R  A  R  G  F  G  F  V  V  F  A  D  P  A  A  A  E  R  V  V  K  E  K  H  N  I  D  G  R  M  :  V  E  A  K  R  A  V  P  R  D  D  Q  S  T  T  S  R  S  S  P  S  I  H  G  S  P  S  P  G  P  G  R  T  R  K  I  F  V  G  G  L  A  S  T  V  T  E  T  A  F  K  Q  Y  F  E  Q  F  G  T  I  T  D  A  V  V  M  Y  D  H  N  T  Q  R  P  R  G  F  G  F  I  T  Y  D  S  E  D  A  V  D  K  V  L  L  K  S  Y  H  E  L  N  D  K  M  V  E  V  K  R  A  V  P  K  E  L  S  P  G  P  S  Q  S  P  L  G  R  Y  S  Y  G  L  N  R  M  N  N  F  L  D  G  Y  A  Q  G  Y  S  P  N  T  V  G  G  Y  G  V  G  M  D  G  R  F  S  P  I  T  G  G  R  S  V  F  T  P  F  G  S  G  Y  G  M  G  L  N  F  E  P  G  L  S  P  G  Y  G  G  S  A  N  V  N  S  S  L  S  Y  G  R  G  L  N  P  Y  Y  S  S  S  R  L  G  G  G  I  G  F  D  G  G  S  G  G  G  N  T  S  F  L  N  S  A  N  R  N  L  W  G  D  G  G  L  H  H  G  T  T  S  T  S  S  S  N  F  L  V  S  G  S  G  G  N  I  G  G  G  S  F  S  N  S  G  V  W  G  S  S  I  S  S  Q  G  G  G  N  V  S  S  K  N  G  N  L  G  Y  V  N  G  D  S  I  Y  G  M  A  G  G  Y  G  R  N  V  T  K  R  G  A  A  M  P  S  G  S  R  G  S  Y  D  G  G  P  L  A  D  L  Y  G  S  G  L  G  Y  D  D  H  T  W  R  P  S  N  S  E  Q  D  A  T  G  S  L  G  Y  G  L  G  N  G  P  S  D  M  S  P  Q  S  T  S  G  Y  V  G  S  Y  G  V  G  N  R  Q  P  N  R   : G  M  D  G  *  E  N  V  S  N  Q  G  C  Y  S  T  R  D  L  F  P  S  K  L  N  H  E  F  *  I  F  P  Q  I  I  *  N  L  R  R  V  G  L  P  F  V  G  D  L  E  M  P  A  F  *  R  S  R  D  R  T  L  Q  D  T  L  F  *  N  D  N  F  F  F  F  E  L  C  F  R  N  F  L  F  F  F  L  F  K  *  G  V  K  S  N  C  S  C  S  N  T  Y  K  G  N  R  Q  F  I  F  A  Q  N  F  Y  I  P  C  F  C  C  K  R  V  E  C  Y  V  M  L  S  L  L  F  A  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7407" stop="7411"/>
                    <exon start="7764" stop="7989"/>
                    <exon start="8293" stop="9484"/>
                    <exon start="12665" stop="12678"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKMQVDLGKLFVGGISWDTDDERLKEYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAAAERVVKEKHNIDGRMVEAKRAVPRDDQSTTSRSSPSIHGSPSPGPGRTRKIFVGGLASTVTETAFKQYFEQFGTITDAVVMYDHNTQRPRGFGFITYDSEDAVDKVLLKSYHELNDKMVEVKRAVPKELSPGPSQSPLGRYSYGLNRMNNFLDGYAQGYSPNTVGGYGVGMDGRFSPITGGRSVFTPFGSGYGMGLNFEPGLSPGYGGSANVNSSLSYGRGLNPYYSSSRLGGGIGFDGGSGGGNTSFLNSANRNLWGDGGLHHGTTSTSSSNFLVSGSGGNIGGGSFSNSGVWGSSISSQGGGNVSSKNGNLGYVNGDSIYGMAGGYGRNVTKRGAAMPSGSRGSYDGGPLADLYGSGLGYDDHTWRPSNSEQDATGSLGYGLGNGPSDMSPQSTSGYVGSYGVGNRQPNRGMDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23474" PGL_stop="25427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23474" e_stop="23528"/>
            <exon e_start="24682" e_stop="25427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.982"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="23474" e_stop="23528" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23529" i_stop="24681" i_length="1153"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24682" e_stop="25427" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23474" stop="23528"/>
              <exon start="24682" stop="25427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAG : GCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATACATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTGTTTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGATTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</gDNA_template>
            <first_frame> V  E  S  I  L  S  *  K  G  F  I  I  K  I  Q  D  S  *   : G  L  G  D  F  C  E  F  L  V  V  V  V  I  G  R  S  R  N  N  G  G  S  I  A  K  F  A  V  P  E  W  K  F  *  A  R  K  S  G  A  K  Y  I  G  N  Y  R  E  S  L  F  H  Y  I  C  C  W  S  F  D  F  Y  Y  N  G  C  N  L  *  A  *  R  S  F  I  P  S  F  D  E  N  H  *  F  P  Y  V  *  I  *  R  H  V  *  S  *  *  H  C  Y  E  D  W  *  G  L  Y  W  C  K  S  E  S  I  F  Y  L  H  K  P  N  *  C  R  R  F  A  V  S  Y  R  Q  W  H  *  E  *  S  *  L  S  W  E  N  *  *  T  N  *  L  *  *  S  R  C  V  S  F  V  D  E  S  S  Y  *  E  V  Q  G  Y  T  F  L  Q  I  W  E  V  S  P  W  I  E  *  *  F  V  P  H  G  L  A  V  *  A  *  G  W  K  D  C  C  F  L  Q  G  L  P  R  V  C  G  F  *  V  G  E  L  Y  A  *  C  G  E  H  W  R  V  S  Y  W  W  K  C  S  E  K  E  E  K  E  Q  G  Q  N  F  W  * </first_frame>
            <second_frame>  *  N  P  F  *  A  K  R  G  S  *  S  R  F  K  I  H  E  :  A  L  E  I  S  V  N  F  L  W  W  *  *  L  E  G  V  G  T  M  V  G  R  S  P  S  L  L  S  R  N  G  S  F  R  P  E  N  L  G  Q  N  T  L  A  I  I  G  N  L  C  F  T  I  F  V  V  G  V  L  I  F  T  I  M  A  A  T  Y  E  P  E  D  P  L  F  H  P  S  T  K  I  T  N  F  L  T  S  K  S  D  A  T  F  K  A  D  D  T  V  M  K  T  G  E  D  F  I  G  A  N  Q  K  A  F  S  T  F  I  N  L  T  D  V  D  V  S  L  S  A  T  D  S  G  T  E  S  D  P  D  C  H  G  K  T  D  E  P  I  D  C  N  D  P  D  V  F  H  L  L  M  R  V  A  I  E  K  F  K  D  I  H  F  Y  R  F  G  K  S  V  R  G  S  N  D  S  S  C  H  M  A  W  R  F  R  P  K  D  G  K  T  A  A  F  Y  K  D  Y  R  E  F  V  V  S  R  S  E  N  C  T  L  S  V  V  S  I  G  E  Y  H  T  G  G  N  A  R  K  R  K  R  K  S  K  D  R  I  S  G   </second_frame>
            <third_frame>   R  I  H  F  E  L  K  G  V  H  N  Q  D  S  R  F  M  R :   P  W  R  F  L  *  I  S  C  G  G  S  D  W  K  E  *  E  Q  W  W  V  D  R  Q  V  C  C  P  G  M  E  V  L  G  Q  K  I  W  G  K  I  H  W  Q  L  *  G  I  S  V  S  L  Y  L  L  L  E  F  *  F  L  L  *  W  L  Q  L  M  S  L  K  I  L  Y  S  I  L  R  R  K  S  L  I  S  L  R  L  N  L  T  P  R  L  K  L  M  T  L  L  *  R  L  V  R  T  L  L  V  Q  I  R  K  H  F  L  P  S  *  T  *  L  M  S  T  F  R  C  Q  L  Q  T  V  A  L  R  V  I  L  I  V  M  G  K  L  M  N  Q  L  I  V  M  I  Q  M  C  F  I  C  *  *  E  *  L  L  R  S  S  R  I  Y  I  F  T  D  L  G  S  Q  S  V  D  R  M  I  V  R  A  T  W  L  G  G  L  G  L  R  M  E  R  L  L  L  F  T  R  I  T  A  S  L  W  F  L  G  R  R  T  V  R  L  V  W  *  A  L  E  S  I  I  L  V  E  M  L  G  K  G  R  E  R  A  R  T  E  F  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24721" stop="25425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEGVGTMVGRSPSLLSRNGSFRPENLGQNTLAIIGNLCFTIFVVGVLIFTIMAATYEPEDPLFHPSTKITNFLTSKSDATFKADDTVMKTGEDFIGANQKAFSTFINLTDVDVSLSATDSGTESDPDCHGKTDEPIDCNDPDVFHLLMRVAIEKFKDIHFYRFGKSVRGSNDSSCHMAWRFRPKDGKTAAFYKDYREFVVSRSENCTLSVVSIGEYHTGGNARKRKRKSKDRISG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31534" PGL_stop="27171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31534" e_stop="31470"/>
            <exon e_start="30243" e_stop="30042"/>
            <exon e_start="29961" e_stop="29781"/>
            <exon e_start="28734" e_stop="28596"/>
            <exon e_start="28026" e_stop="27957"/>
            <exon e_start="27558" e_stop="27171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.400" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31534" e_stop="31470" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.400">
            <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30243" e_stop="30042" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.982">
            <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29961" e_stop="29781" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.486">
            <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28734" e_stop="28596" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28026" e_stop="27957" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.945">
            <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="27558" e_stop="27171" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31534" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31508" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31507" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31505" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31503" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31493" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31490" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696947" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30189" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28709" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28678" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27551" stop="27171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAG : AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT : CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG : GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG : GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG : GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCAGAAA</gDNA_template>
            <first_frame> I  F  Y  F  L  C  *  F  L  Q  F  *  V  L  W  V  Y  N  S  *  *  R :   K  K  E  R  T  K  C  R  K  E  *  Q  L  R  I  F  *  T  T  S  W  T  L  F  L  R  V  S  *  N  T  K  L  R  H  F  F  K  T  K  V  K  A  L  L  V  L  N  S  I  G  Y  L  D  V  K  N  Q  S  T  T  V  *  V  E  A  N  :  R  L  I  A  C  C  G  E  T  R  K  F  Q  P  A  F  *  S  V  L  L  P  S  G  C  Y  S  S  G  L  T  T  I  F  F  H  F  C  A  L  V  C  P  L  V  *  S  R  S  F  C  *  K  M  L  L  G  *  *  T   : G  L  L  R  F  L  V  L  S  Y  L  K  T  S  S  S  I  L  P  R  E  L  A  L  N  *  T  M  V  W  A  S  F  K  M  L  P  W  A  V  I  *  N  N  S  *  W :   L  Y  *  A  C  G  L  L  V  *  S  E  P  G  A  T  S  *  L  F  C  I  L  :  V  S  S  L  L  T  L  Y  Q  C  Y  T  K  D  M  K  M  K  L  M  V  S  F  T  V  P  S  I  S  F  K  A  I  T  R  S  W  I  L  V  S  S  A  D  Y  R  E  A  A  S  G  E  R  R  L  N  K  S  S  I  Y  *  R  *  T  R  G  E  K  T  L  A  C  M  Q  R  S  N  M  K  L  V  F  V  L  R  Q  H  I  A  V  C  M  L  R  I  N  R  R  G  I  E  L  *  V  I  S  S  C  K  C  C  R  Y  F  D  *  S  L  A  F  E  N  K  L  N  F  A  E  </first_frame>
            <second_frame>  F  F  I  F  F  A  S  F  S  S  F  E  Y  F  G  F  I  I  L  D  K   : E  K  K  K  E  Q  N  A  G  R  N  N  S  *  E  S  F  E  Q  H  H  G  L  Y  F  *  G  *  A  E  T  Q  S  Y  V  I  F  S  R  R  K  *  K  L  C  *  C  S  I  Q  *  A  I  W  T  S  K  T  N  P  P  L  F  R  W  R  Q  I :   G  *  *  H  V  V  E  K  Q  E  N  F  S  R  R  F  N  Q  C  Y  C  H  L  G  A  I  R  V  A  *  L  Q  F  S  F  T  S  V  L  W  S  V  L  W  S  D  R  A  V  S  V  E  K  C  F  W  G  N  K  Q  :  V  S  Y  G  S  S  S  C  L  T  *  R  P  L  H  Q  Y  C  Q  E  N  W  H  *  I  K  P  W  F  G  L  P  S  R  C  C  L  G  R  *  S  E  T  I  R  S   : G  Y  T  E  L  V  G  C  W  Y  D  R  N  L  V  Q  L  L  D  C  S  V  Y  W :   F  H  R  C  S  H  S  T  S  A  I  R  K  I  *  R  *  S  *  W  F  R  L  Q  C  P  R  *  A  S  R  P  L  Q  E  A  G  F  W  C  P  Q  Q  T  T  A  R  Q  L  Q  G  K  E  G  *  I  N  L  Q  F  T  E  G  K  L  V  E  K  K  H  *  P  V  C  R  D  Q  I  *  N  S  F  S  C  L  G  N  T  L  L  Y  V  C  L  G  L  I  D  E  V  L  N  C  R  S  S  R  R  V  N  V  A  G  T  S  I  E  V  W  H  L  K  I  N  *  I  L  Q  K </second_frame>
            <third_frame>   F  L  F  S  L  L  V  S  P  V  L  S  T  L  G  L  *  F  L  I  K  :  K  K  R  K  N  K  M  P  E  G  I  T  A  E  N  L  L  N  N  I  M  D  S  I  S  E  G  E  L  K  H  K  A  T  S  F  F  Q  D  E  S  E  S  S  V  S  A  Q  F  N  R  L  F  G  R  Q  K  P  I  H  H  C  L  G  G  G  K   : S  A  D  S  M  L  W  R  N  K  K  I  S  A  G  V  L  I  S  A  T  A  I  W  V  L  F  E  W  L  N  Y  N  F  L  S  L  L  C  F  G  L  S  F  G  L  I  A  Q  F  L  L  K  N  A  S  G  V  I  N  R :   S  P  T  V  P  R  L  V  L  P  E  D  L  F  I  N  I  A  K  R  I  G  T  E  L  N  H  G  L  G  F  L  Q  D  A  A  L  G  G  N  L  K  Q  F  V  V  :  V  I  L  S  L  W  A  A  G  M  I  G  T  W  C  N  F  L  T  V  L  Y  I   : G  F  I  A  A  H  T  L  P  V  L  Y  E  R  Y  E  D  E  V  D  G  F  V  Y  S  A  L  D  K  L  Q  G  H  Y  K  K  L  D  S  G  V  L  S  R  L  P  R  G  S  F  R  G  K  K  V  E  *  I  F  N  L  L  K  V  N  S  W  R  K  N  I  S  L  Y  A  E  I  K  Y  E  T  R  F  R  A  *  A  T  H  C  C  M  Y  A  *  D  *  S  T  R  Y  *  T  V  G  H  L  V  V  *  M  L  Q  V  L  R  L  K  F  G  I  *  K  *  I  E  F  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31481" stop="31470"/>
                    <exon start="30243" stop="30042"/>
                    <exon start="29961" stop="29781"/>
                    <exon start="28734" stop="28596"/>
                    <exon start="28026" stop="27957"/>
                    <exon start="27558" stop="27389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIKKKRKNKMPEGITAENLLNNIMDSISEGELKHKATSFFQDESESSVSAQFNRLFGRQKPIHHCLGGGKSADSMLWRNKKISAGVLISATAIWVLFEWLNYNFLSLLCFGLSFGLIAQFLLKNASGVINRSPTVPRLVLPEDLFINIAKRIGTELNHGLGFLQDAALGGNLKQFVVVILSLWAAGMIGTWCNFLTVLYIGFIAAHTLPVLYERYEDEVDGFVYSALDKLQGHYKKLDSGVLSRLPRGSFRGKKVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35719" PGL_stop="36891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35719" e_stop="35827"/>
            <exon e_start="35907" e_stop="36026"/>
            <exon e_start="36501" e_stop="36891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35719" e_stop="35827" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.787">
            <gDNA_intron_boundary i_start="35828" i_stop="35906" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35907" e_stop="36026" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.805" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36027" i_stop="36500" i_length="474"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="36501" e_stop="36891" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35719" stop="35827"/>
              <exon start="35907" stop="36026"/>
              <exon start="36501" stop="36891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35744" stop="35827"/>
              <exon start="35907" stop="36026"/>
              <exon start="36501" stop="36882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35790" stop="35827"/>
              <exon start="35907" stop="36026"/>
              <exon start="36501" stop="36887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTTCCAACTGAGTATAGATATATATCAAAAGAAGTTTTACCAACAAATCAATTTTCTGTAACGGAGTACTTTTCTCCCATCCATGATTTTGAACGGACATGGCCAG : CTGTATACTTCTTATATGATCTGTCACCAATTACCGTGACCATTAGAGAAGAACGTCGCAGTTTTCTGCACTTCATCACTCGGCTCTGTGCAGTTTTGGGTGGTACATTTGCCTTGACAG : GCATGCTAGATGGATGGATGTACAAGATTCTTGAATCTGTTACAAAGAAAAACAGCAGAACTATTGTGCGCTAAACGTCGAATCATTGCACTACTGATATGTTCAGGCAAAGCTGAATTGCAGATCACTGGTGATCTAGGCAAAAGCTTTAGCAAACAAAGCAGATCAACATTATGTTTATGAACAAGTTGTTTTTATCCCCAGTGGTTTTGTAGCACTAGAAGAACAATACCCAAGTTTATTCTAGAGAAGAAAATGTATTATTCATTGGTTTATGTAACAAAACCTAGGAATATGAAACATTTTGCTGTCAATTTTGCTCAGTTGTTGAAAACTGAAAATGTTATATAAATCAACATATTGATATCTTTTTATCAGATGGGCATTTATA</gDNA_template>
            <first_frame> V  V  P  T  E  Y  R  Y  I  S  K  E  V  L  P  T  N  Q  F  S  V  T  E  Y  F  S  P  I  H  D  F  E  R  T  W  P   : A  V  Y  F  L  Y  D  L  S  P  I  T  V  T  I  R  E  E  R  R  S  F  L  H  F  I  T  R  L  C  A  V  L  G  G  T  F  A  L  T   : G  M  L  D  G  W  M  Y  K  I  L  E  S  V  T  K  K  N  S  R  T  I  V  R  *  T  S  N  H  C  T  T  D  M  F  R  Q  S  *  I  A  D  H  W  *  S  R  Q  K  L  *  Q  T  K  Q  I  N  I  M  F  M  N  K  L  F  L  S  P  V  V  L  *  H  *  K  N  N  T  Q  V  Y  S  R  E  E  N  V  L  F  I  G  L  C  N  K  T  *  E  Y  E  T  F  C  C  Q  F  C  S  V  V  E  N  *  K  C  Y  I  N  Q  H  I  D  I  F  L  S  D  G  H  L   </first_frame>
            <second_frame>  L  F  Q  L  S  I  D  I  Y  Q  K  K  F  Y  Q  Q  I  N  F  L  *  R  S  T  F  L  P  S  M  I  L  N  G  H  G  Q  :  L  Y  T  S  Y  M  I  C  H  Q  L  P  *  P  L  E  K  N  V  A  V  F  C  T  S  S  L  G  S  V  Q  F  W  V  V  H  L  P  *  Q  :  A  C  *  M  D  G  C  T  R  F  L  N  L  L  Q  R  K  T  A  E  L  L  C  A  K  R  R  I  I  A  L  L  I  C  S  G  K  A  E  L  Q  I  T  G  D  L  G  K  S  F  S  K  Q  S  R  S  T  L  C  L  *  T  S  C  F  Y  P  Q  W  F  C  S  T  R  R  T  I  P  K  F  I  L  E  K  K  M  Y  Y  S  L  V  Y  V  T  K  P  R  N  M  K  H  F  A  V  N  F  A  Q  L  L  K  T  E  N  V  I  *  I  N  I  L  I  S  F  Y  Q  M  G  I  Y  </second_frame>
            <third_frame>   C  S  N  *  V  *  I  Y  I  K  R  S  F  T  N  K  S  I  F  C  N  G  V  L  F  S  H  P  *  F  *  T  D  M  A  S :   C  I  L  L  I  *  S  V  T  N  Y  R  D  H  *  R  R  T  S  Q  F  S  A  L  H  H  S  A  L  C  S  F  G  W  Y  I  C  L  D  R :   H  A  R  W  M  D  V  Q  D  S  *  I  C  Y  K  E  K  Q  Q  N  Y  C  A  L  N  V  E  S  L  H  Y  *  Y  V  Q  A  K  L  N  C  R  S  L  V  I  *  A  K  A  L  A  N  K  A  D  Q  H  Y  V  Y  E  Q  V  V  F  I  P  S  G  F  V  A  L  E  E  Q  Y  P  S  L  F  *  R  R  K  C  I  I  H  W  F  M  *  Q  N  L  G  I  *  N  I  L  L  S  I  L  L  S  C  *  K  L  K  M  L  Y  K  S  T  Y  *  Y  L  F  I  R  W  A  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35719" stop="35827"/>
                    <exon start="35907" stop="36026"/>
                    <exon start="36501" stop="36574"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVPTEYRYISKEVLPTNQFSVTEYFSPIHDFERTWPAVYFLYDLSPITVTIREERRSFLHFITRLCAVLGGTFALTGMLDGWMYKILESVTKKNSRTIVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39796" PGL_stop="38958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39796" e_stop="39677"/>
            <exon e_start="39213" e_stop="38958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39796" e_stop="39677" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.938">
            <gDNA_intron_boundary i_start="39676" i_stop="39214" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="39213" e_stop="38958" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39796" stop="39677"/>
              <exon start="39213" stop="38958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGCTTCACATCCTGGTGTTGTATCTGATATACATTTTGAAGATATCATTGTGCAAAATGTTAGCAACCCTATTGTCATTGATCAAGTTTATTGCCCAAGTGGAAAATGCAACAAAGAC : TTGCCTTCACAAGTGAAGATTAGCAAGGTGTCTATCCAAAACATAAAAGGTACATCAAGAACTCAAAATGCAATCTCACTAACTTGTAGCAAAGGCTCACCATGTGAAGGTGTTGAAGTTGGAGATGTTGACATTTCATATAGTGGTAAAGAAGGGCCAGCAAAATCAAGTTGTGAAAATATTAAGCCAACTTTTAAGGGAAAACAAACTCCAGCTGTTTGTTCAGCTGGTGCTGATGCTCCTGCTCCCGCCGCCG</gDNA_template>
            <first_frame> P  A  S  H  P  G  V  V  S  D  I  H  F  E  D  I  I  V  Q  N  V  S  N  P  I  V  I  D  Q  V  Y  C  P  S  G  K  C  N  K  D  :  L  P  S  Q  V  K  I  S  K  V  S  I  Q  N  I  K  G  T  S  R  T  Q  N  A  I  S  L  T  C  S  K  G  S  P  C  E  G  V  E  V  G  D  V  D  I  S  Y  S  G  K  E  G  P  A  K  S  S  C  E  N  I  K  P  T  F  K  G  K  Q  T  P  A  V  C  S  A  G  A  D  A  P  A  P  A  A  </first_frame>
            <second_frame>  L  L  H  I  L  V  L  Y  L  I  Y  I  L  K  I  S  L  C  K  M  L  A  T  L  L  S  L  I  K  F  I  A  Q  V  E  N  A  T  K  T :   C  L  H  K  *  R  L  A  R  C  L  S  K  T  *  K  V  H  Q  E  L  K  M  Q  S  H  *  L  V  A  K  A  H  H  V  K  V  L  K  L  E  M  L  T  F  H  I  V  V  K  K  G  Q  Q  N  Q  V  V  K  I  L  S  Q  L  L  R  E  N  K  L  Q  L  F  V  Q  L  V  L  M  L  L  L  P  P  P </second_frame>
            <third_frame>   C  F  T  S  W  C  C  I  *  Y  T  F  *  R  Y  H  C  A  K  C  *  Q  P  Y  C  H  *  S  S  L  L  P  K  W  K  M  Q  Q  R   : L  A  F  T  S  E  D  *  Q  G  V  Y  P  K  H  K  R  Y  I  K  N  S  K  C  N  L  T  N  L  *  Q  R  L  T  M  *  R  C  *  S  W  R  C  *  H  F  I  *  W  *  R  R  A  S  K  I  K  L  *  K  Y  *  A  N  F  *  G  K  T  N  S  S  C  L  F  S  W  C  *  C  S  C  S  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39796" stop="39677"/>
                    <exon start="39213" stop="38959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PASHPGVVSDIHFEDIIVQNVSNPIVIDQVYCPSGKCNKDLPSQVKISKVSIQNIKGTSRTQNAISLTCSKGSPCEGVEVGDVDISYSGKEGPAKSSCENIKPTFKGKQTPAVCSAGADAPAPAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41229" PGL_stop="39916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41229" e_stop="41063"/>
            <exon e_start="40590" e_stop="40291"/>
            <exon e_start="40192" e_stop="39916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41229" e_stop="41063" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41062" i_stop="40591" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40590" e_stop="40291" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="40192" e_stop="39916" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41229" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="39916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41223" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41218" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41217" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41217" stop="41063"/>
              <exon start="40590" stop="40299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41215" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41194" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41194" stop="41063"/>
              <exon start="40590" stop="40298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="39923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41174" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41174" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41173" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41167" stop="41063"/>
              <exon start="40590" stop="40351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41165" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41146" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41142" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41095" stop="41063"/>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAAAAAGAAAAAAATTTAAAAAAAAAGAAAAAAAAATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGTGAG : GCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT : AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCACTAAAGTCACTTGTGGACCTG</gDNA_template>
            <first_frame> L  K  K  E  K  N  L  K  K  K  K  K  K  W  I  *  K  S  S  L  F  I  L  D  W  V  C  Y  F  *  H  I  L  E  N  L  K  M  Q  L  L  I  *  P  N  M  V  P  Q  P  M  L  I  L  V  R :   L  L  E  K  L  L  K  R  H  V  H  Q  Q  V  Q  V  Q  L  *  S  Q  K  E  H  S  K  *  T  K  C  Y  *  K  D  H  A  K  A  L  L  N  F  K  F  K  P  F  *  K  H  Q  Q  I  L  M  Q  L  K  L  V  N  G  *  Q  *  T  N  L  I  S  S  Q  C  L  V  V  E  H  L  M  V  K  V  K  K  H  G  N  A  K  S  Q  K  S  A  P  S  F  P  I :   I  *  A  S  T  P  S  Q  I  P  *  S  R  T  *  Q  H  W  I  A  K  H  S  M  *  M  L  T  N  A  R  T  *  H  S  P  N  S  T  S  V  L  R  L  I  A  R  T  L  M  E  S  T  W  R  E  Q  A  L  *  I  S  Q  S  L  L  S  P  R  E  M  I  V  S  P  L  A  M  K  R  N  N  F  T  S  L  K  S  L  V  D  L </first_frame>
            <second_frame>  *  K  K  K  K  I  *  K  K  R  K  K  N  G  Y  E  N  Q  V  C  L  F  W  I  G  C  V  I  S  S  T  F  W  R  I  S  K  C  N  F  *  Y  N  Q  I  W  C  H  S  Q  C  *  Y  *  *   : G  C  W  K  S  F  *  R  G  M  C  I  N  K  S  K  Y  N  C  D  P  K  R  N  I  P  N  E  P  S  A  I  R  R  T  M  Q  R  P  Y  *  T  S  N  S  S  H  F  E  S  T  N  R  S  *  C  N  *  N  W  *  M  V  N  S  K  Q  T  *  F  L  H  N  V  W  W  W  N  T  *  W  S  R  *  R  S  M  G  M  Q  K  V  K  K  V  H  Q  A  S  Q   : *  F  E  L  Q  L  P  H  K  F  H  N  Q  G  H  N  N  I  G  *  Q  S  I  P  C  E  C  *  P  M  Q  E  L  N  I  H  Q  I  Q  R  Q  C  S  G  *  *  P  E  H  *  W  N  P  R  G  E  S  K  L  C  E  Y  H  R  V  F  F  L  H  G  R  *  L  Y  L  H  W  R  *  N  G  T  T  L  H  H  *  S  H  L  W  T   </second_frame>
            <third_frame>   K  K  R  K  K  F  K  K  K  E  K  K  M  D  M  K  I  K  F  V  Y  F  G  L  G  V  L  F  L  A  H  F  G  E  S  Q  N  A  T  F  D  I  T  K  Y  G  A  T  A  N  A  D  I  S  E  :  A  V  G  K  A  F  K  E  A  C  A  S  T  S  P  S  T  I  V  I  P  K  G  T  F  Q  M  N  Q  V  L  L  E  G  P  C  K  G  P  I  E  L  Q  I  Q  A  I  L  K  A  P  T  D  P  N  A  I  K  T  G  E  W  L  T  V  N  K  L  D  F  F  T  M  S  G  G  G  T  L  D  G  Q  G  K  E  A  W  E  C  K  K  S  K  K  C  T  K  L  P  N  :  N  L  S  F  N  S  L  T  N  S  I  I  K  D  I  T  T  L  D  S  K  A  F  H  V  N  V  N  Q  C  K  N  L  T  F  T  K  F  N  V  S  A  P  A  D  S  P  N  T  D  G  I  H  V  A  R  A  S  S  V  N  I  T  E  S  S  F  S  T  G  D  D  C  I  S  I  G  D  E  T  E  Q  L  Y  I  T  K  V  T  C  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41227" stop="41063"/>
                    <exon start="40590" stop="40291"/>
                    <exon start="40192" stop="39917"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKKFKKKEKKMDMKIKFVYFGLGVLFLAHFGESQNATFDITKYGATANADISEAVGKAFKEACASTSPSTIVIPKGTFQMNQVLLEGPCKGPIELQIQAILKAPTDPNAIKTGEWLTVNKLDFFTMSGGGTLDGQGKEAWECKKSKKCTKLPNNLSFNSLTNSIIKDITTLDSKAFHVNVNQCKNLTFTKFNVSAPADSPNTDGIHVARASSVNITESSFSTGDDCISIGDETEQLYITKVTCGP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40594" e_stop="40291"/>
            <exon e_start="40192" e_stop="39936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.987"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="40594" e_stop="40291" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="40290" i_stop="40193" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="40192" e_stop="39936" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40594" stop="40291"/>
              <exon start="40192" stop="39936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40590" stop="40291"/>
              <exon start="40192" stop="40023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCCAAT : AATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAAACGGAACAACTTTACATCAC</gDNA_template>
            <first_frame> L  G  C  W  K  S  F  *  R  G  M  C  I  N  K  S  K  Y  N  C  D  P  K  R  N  I  P  N  E  P  S  A  I  R  R  T  M  Q  R  P  Y  *  T  S  N  S  S  H  F  E  S  T  N  R  S  *  C  N  *  N  W  *  M  V  N  S  K  Q  T  *  F  L  H  N  V  W  W  W  N  T  *  W  S  R  *  R  S  M  G  M  Q  K  V  K  K  V  H  Q  A  S  Q   : *  F  E  L  Q  L  P  H  K  F  H  N  Q  G  H  N  N  I  G  *  Q  S  I  P  C  E  C  *  P  M  Q  E  L  N  I  H  Q  I  Q  R  Q  C  S  G  *  *  P  E  H  *  W  N  P  R  G  E  S  K  L  C  E  Y  H  R  V  F  F  L  H  G  R  *  L  Y  L  H  W  R  *  N  G  T  T  L  H  H </first_frame>
            <second_frame>  *  A  V  G  K  A  F  K  E  A  C  A  S  T  S  P  S  T  I  V  I  P  K  G  T  F  Q  M  N  Q  V  L  L  E  G  P  C  K  G  P  I  E  L  Q  I  Q  A  I  L  K  A  P  T  D  P  N  A  I  K  T  G  E  W  L  T  V  N  K  L  D  F  F  T  M  S  G  G  G  T  L  D  G  Q  G  K  E  A  W  E  C  K  K  S  K  K  C  T  K  L  P  N  :  N  L  S  F  N  S  L  T  N  S  I  I  K  D  I  T  T  L  D  S  K  A  F  H  V  N  V  N  Q  C  K  N  L  T  F  T  K  F  N  V  S  A  P  A  D  S  P  N  T  D  G  I  H  V  A  R  A  S  S  V  N  I  T  E  S  S  F  S  T  G  D  D  C  I  S  I  G  D  E  T  E  Q  L  Y  I   </second_frame>
            <third_frame>   R  L  L  E  K  L  L  K  R  H  V  H  Q  Q  V  Q  V  Q  L  *  S  Q  K  E  H  S  K  *  T  K  C  Y  *  K  D  H  A  K  A  L  L  N  F  K  F  K  P  F  *  K  H  Q  Q  I  L  M  Q  L  K  L  V  N  G  *  Q  *  T  N  L  I  S  S  Q  C  L  V  V  E  H  L  M  V  K  V  K  K  H  G  N  A  K  S  Q  K  S  A  P  S  F  P  I :   I  *  A  S  T  P  S  Q  I  P  *  S  R  T  *  Q  H  W  I  A  K  H  S  M  *  M  L  T  N  A  R  T  *  H  S  P  N  S  T  S  V  L  R  L  I  A  R  T  L  M  E  S  T  W  R  E  Q  A  L  *  I  S  Q  S  L  L  S  P  R  E  M  I  V  S  P  L  A  M  K  R  N  N  F  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40590" stop="40291"/>
                    <exon start="40192" stop="39938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVGKAFKEACASTSPSTIVIPKGTFQMNQVLLEGPCKGPIELQIQAILKAPTDPNAIKTGEWLTVNKLDFFTMSGGGTLDGQGKEAWECKKSKKCTKLPNNLSFNSLTNSIIKDITTLDSKAFHVNVNQCKNLTFTKFNVSAPADSPNTDGIHVARASSVNITESSFSTGDDCISIGDETEQLYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42750" PGL_stop="45686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42750" e_stop="42855"/>
            <exon e_start="43529" e_stop="43690"/>
            <exon e_start="44352" e_stop="44882"/>
            <exon e_start="45209" e_stop="45686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.968"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42855" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.526">
            <gDNA_intron_boundary i_start="42856" i_stop="43528" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43529" e_stop="43690" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.655">
            <gDNA_intron_boundary i_start="43691" i_stop="44351" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="44352" e_stop="44882" e_length="531"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44883" i_stop="45208" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="45209" e_stop="45686" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42750" stop="42855"/>
              <exon start="43529" stop="43690"/>
              <exon start="44352" stop="44803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42750" stop="42855"/>
              <exon start="43529" stop="43690"/>
              <exon start="44352" stop="44700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42759" stop="42855"/>
              <exon start="43529" stop="43690"/>
              <exon start="44352" stop="44828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42773" stop="42855"/>
              <exon start="43529" stop="43690"/>
              <exon start="44352" stop="44694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43558" stop="43690"/>
              <exon start="44352" stop="44815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43558" stop="43690"/>
              <exon start="44352" stop="44810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43596" stop="43690"/>
              <exon start="44352" stop="44882"/>
              <exon start="45209" stop="45318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43632" stop="43690"/>
              <exon start="44352" stop="44882"/>
              <exon start="45209" stop="45533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44384" stop="44798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44545" stop="44882"/>
              <exon start="45209" stop="45630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44673" stop="44882"/>
              <exon start="45209" stop="45634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45211" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45261" stop="45686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266619" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="45634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="45634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGATCTG : GTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAG : CTCCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGATGGCCGCTTTGGTTCCTCTGGAGGAGGCACTATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATCTTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGACCTAGCTCAGGCCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCGATCGAATAATTTTGCAGAAGAGTTTGATTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAG : GAGGTGTGGCCACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATGGTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTTGATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTATATTGTTTTTCTTTTGCACTTGTAAATA</gDNA_template>
            <first_frame> K  P  E  G  E  N  S  I  W  F  P  T  R  S  I  *  C  I  G  G  H  R  C  C  C  P  R  T  *  C  T  *  C  *  S   : G  D  T  L  R  T  S  E  *  F  R  D  L  C  S  S  I  W  S  N  W  T  C  W  *  E  R  K  C  H  S  H  A  F  L  K  T  A  *  G  C  K  R  Y  *  T  *  C  R  M  Q  I  Y  R   : A  P  N  N  *  S  R  G  W  S  S  R  N  V  *  *  N  G  K  R  *  W  P  L  W  F  L  W  R  R  H  Y  A  *  S  I  *  *  F  W  W  R  P  F  W  W  L  W  K  *  E  Q  Q  V  W  S  R  S  L  F  I  F  C  S  N  R  W  I  *  R  N  W  F  R  K  I  K  R  W  L  *  R  T  *  L  R  P  L  R  K  V  W  W  W  F  R  R  H  T  R  L  K  T  F  G  W  F  P  Q  L  W  W  F  W  K  L  Q  K  F  K  S  I  E  *  F  C  R  R  V  *  F  R  P  F  *  K  I  R  R  F  R  S  *  S  K  Q  P  F  K  P  F  *  C  L  R  R  *  Q  *  *  W  *  M  V  I  R  V  G  G  E  L  F  L  T  L  L  Q   : G  G  V  A  T  Q  *  M  M  V  K  M  K  L  R  Y  V  K  C  V  C  L  L  P  G  A  V  E  *  Q  Q  L  Q  M  V  M  L  R  L  V  T  V  E  N  N  T  S  T  S  T  W  S  P  K  V  P  T  R  Y  M  *  P  I  A  T  K  F  S  P  L  L  A  L  C  F  F  A  V  C  L  K  *  I  F  F  L  Q  E  I  I  L  V  L  A  S  D  S  G  C  N  V  Q  E  I  I  L  V  L  A  S  D  S  G  C  N  V  Q  Y  K  F  *  T  D  L  D  L  I  I  *  P  V  Y  E  D  V  F  N  L  L  N  Q  T  G  E  K  A  Y  I  E  S  I  L  F  F  F  C  T  C  K   </first_frame>
            <second_frame>  S  Q  R  E  R  T  L  S  G  F  R  Q  G  Q  F  N  V  L  V  A  T  D  V  A  A  R  G  L  D  V  P  N  V  D  L  :  V  I  H  Y  E  L  P  N  N  S  E  I  F  V  H  R  S  G  R  T  G  R  A  G  K  K  G  S  A  I  L  M  H  S  S  K  Q  H  R  D  V  K  G  I  E  H  D  A  G  C  R  F  T  E  :  L  P  T  I  K  V  E  A  G  A  V  E  M  Y  S  E  M  G  K  D  D  G  R  F  G  S  S  G  G  G  T  M  R  S  R  S  S  D  F  G  G  G  R  S  G  G  Y  G  N  K  S  S  K  F  G  R  E  V  S  S  S  S  V  R  T  G  G  Y  S  A  T  G  S  G  R  S  R  G  G  F  S  G  P  S  S  G  R  S  G  K  F  G  G  G  S  G  D  T  R  G  S  K  R  L  G  G  F  R  N  F  G  G  F  G  S  S  K  S  S  N  R  S  N  N  F  A  E  E  F  D  S  G  R  S  R  R  F  G  D  S  D  H  D  R  N  N  R  S  S  R  F  D  V  F  G  D  D  N  D  S  G  E  W  *  S  E  L  E  E  N  Y  F  *  L  C  C  K  :  E  V  W  P  L  N  R  *  W  *  R  *  N  S  D  M  *  S  V  Y  V  Y  Y  Q  V  L  *  S  S  S  S  C  R  W  *  C  Y  D  S  L  Q  *  K  I  T  L  Q  H  P  L  G  L  Q  R  Y  L  H  A  I  C  N  R  *  L  P  S  S  H  H  C  W  R  Y  V  S  S  L  Y  A  *  N  K  Y  F  F  C  K  R  S  Y  W  Y  L  L  V  I  V  V  V  M  F  K  R  S  Y  W  Y  L  L  V  I  V  V  V  M  F  S  I  N  F  E  Q  T  L  I  L  L  F  N  Q  F  M  R  M  Y  S  I  C  *  I  K  Q  V  K  R  L  I  L  K  V  Y  C  F  S  F  A  L  V  N  </second_frame>
            <third_frame>   A  R  G  R  E  L  Y  L  V  S  D  K  V  N  L  M  Y  W  W  P  P  M  L  L  P  E  D  L  M  Y  L  M  L  I  W :   *  Y  I  T  N  F  R  I  I  Q  R  S  L  F  I  D  L  V  E  L  D  V  L  V  R  K  E  V  P  F  S  C  I  P  Q  N  S  I  G  M  *  K  V  L  N  M  M  P  D  A  D  L  Q  S :   S  Q  Q  L  K  *  R  L  E  Q  *  K  C  I  V  K  W  E  K  M  M  A  A  L  V  P  L  E  E  A  L  C  V  V  D  L  V  I  L  V  E  A  V  L  V  A  M  E  I  R  A  A  S  L  V  E  K  S  L  H  L  L  F  E  Q  V  D  I  A  Q  L  V  Q  E  D  Q  E  V  A  L  A  D  L  A  Q  A  A  Q  E  S  L  V  V  V  Q  E  T  H  E  A  Q  N  V  W  V  V  S  A  T  L  V  V  L  E  A  P  K  V  Q  I  D  R  I  I  L  Q  K  S  L  I  Q  A  V  L  E  D  S  E  I  Q  I  M  I  E  T  T  V  Q  A  V  L  M  S  S  E  M  T  M  I  V  V  N  G  D  Q  S  W  R  R  T  I  S  N  S  V  A  R :   R  C  G  H  S  I  D  D  G  E  D  E  T  P  I  C  E  V  C  M  F  I  T  R  C  C  R  V  A  A  A  A  D  G  D  A  T  T  R  Y  S  R  K  *  H  F  N  I  H  L  V  S  K  G  T  Y  T  L  Y  V  T  D  S  Y  Q  V  L  T  I  A  G  V  M  F  L  R  C  M  L  E  I  N  I  F  F  A  R  D  H  I  G  T  C  *  *  *  W  L  *  C  S  R  D  H  I  G  T  C  *  *  *  W  L  *  C  S  V  *  I  L  N  R  P  *  S  Y  Y  L  T  S  L  *  G  C  I  Q  F  V  E  S  N  R  *  K  G  L  Y  *  K  Y  I  V  F  L  L  H  L  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42751" stop="42855"/>
                    <exon start="43529" stop="43690"/>
                    <exon start="44352" stop="44843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRERTLSGFRQGQFNVLVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGSAILMHSSKQHRDVKGIEHDAGCRFTELPTIKVEAGAVEMYSEMGKDDGRFGSSGGGTMRSRSSDFGGGRSGGYGNKSSKFGREVSSSSVRTGGYSATGSGRSRGGFSGPSSGRSGKFGGGSGDTRGSKRLGGFRNFGGFGSSKSSNRSNNFAEEFDSGRSRRFGDSDHDRNNRSSRFDVFGDDNDSGEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50831" PGL_stop="48517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50831" e_stop="50554"/>
            <exon e_start="49619" e_stop="49518"/>
            <exon e_start="48740" e_stop="48517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50831" e_stop="50554" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.923">
            <gDNA_intron_boundary i_start="50553" i_stop="49620" i_length="934"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49518" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49517" i_stop="48741" i_length="777"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48740" e_stop="48517" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50831" stop="50554"/>
              <exon start="49619" stop="49518"/>
              <exon start="48740" stop="48517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAG : ATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAG : GTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</gDNA_template>
            <first_frame> F  H  S  V  L  Y  H  L  H  N  R  L  S  Q  G  S  Q  V  Q  K  *  *  K  *  N  *  G  Q  S  Y  *  K  N  C  R  D  C  F  P  Q  Q  S  C  L  P  K  K  D  *  S  I  W  L  N  R  G  L  N  F  N  W  D  L  V  L  F  T  T  H  *  A  M  T  C  H  C  S  L  I  T  I  V  E  *  I  R  F  H  L  R  L  C  R :   Y  *  K  D  T  K  M  K  S  G  F  W  S  S  L  I  T  G  S  V  W  P  R  H  L  L  I  V  Q  *  L  Y  G  R :   *  S  W  M  E  G  Y  A  *  S  T  K  L  L  V  M  R  S  L  C  A  L  Y  H  G  A  L  M  I  V  S  F  S  P  V  A  W  K  R  S  L  D  C  G  M  *  T  P  V  S  V  Y  V  F  M  R  K  M  V  L  V  L  F  R  V  D  G  L  Q  M  G  K  G  Y  </first_frame>
            <second_frame>  F  I  L  Y  Y  I  T  F  T  T  G  C  L  R  G  V  R  S  R  N  N  E  N  K  I  K  D  K  A  T  R  R  I  A  G  T  V  S  H  N  S  H  A  S  R  K  K  I  D  P  S  G  *  T  G  A  *  I  S  T  G  I  L  F  S  S  Q  L  I  K  Q  *  H  V  I  A  H  *  S  P  L  W  N  R  *  D  S  I  S  D  F  A   : D  I  R  R  T  Q  R  *  S  L  V  F  G  V  L  S  *  R  E  V  F  G  L  V  I  C  *  L  F  S  N  Y  M  G   : G  E  V  G  W  K  V  M  L  E  A  Q  S  Y  W  S  *  G  A  C  V  L  C  I  M  E  P  *  *  *  S  A  S  H  L  W  P  G  R  G  R  *  T  V  G  C  R  L  R  *  V  Y  T  S  L  *  E  K  W  S  W  F  Y  F  V  W  M  G  S  R  W  G  K  D  I </second_frame>
            <third_frame>   S  F  C  I  I  S  P  S  Q  Q  V  V  S  G  E  S  G  P  E  I  M  K  I  K  L  R  T  K  L  L  E  E  L  Q  G  L  F  P  T  T  V  M  P  P  E  K  R  L  I  H  L  V  E  Q  G  L  E  F  Q  L  G  S  C  S  L  H  N  S  L  S  N  D  M  S  L  L  T  D  H  H  C  G  I  D  K  I  P  S  Q  T  L  Q  :  I  L  E  G  H  K  D  E  V  W  F  L  E  F  S  H  N  G  K  C  L  A  S  S  S  A  D  C  S  V  I  I  W  E  :  V  K  L  D  G  R  L  C  L  K  H  K  V  I  G  H  E  E  P  V  C  F  V  S  W  S  P  D  D  S  Q  L  L  T  C  G  L  E  E  V  V  R  L  W  D  V  D  S  G  E  C  I  R  L  Y  E  K  N  G  L  G  F  I  S  C  G  W  A  P  D  G  E  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50829" stop="50554"/>
                    <exon start="49619" stop="49518"/>
                    <exon start="48740" stop="48519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFCIISPSQQVVSGESGPEIMKIKLRTKLLEELQGLFPTTVMPPEKRLIHLVEQGLEFQLGSCSLHNSLSNDMSLLTDHHCGIDKIPSQTLQILEGHKDEVWFLEFSHNGKCLASSSADCSVIIWEVKLDGRLCLKHKVIGHEEPVCFVSWSPDDSQLLTCGLEEVVRLWDVDSGECIRLYEKNGLGFISCGWAPDGERI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59430" PGL_stop="61348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59430" e_stop="59834"/>
            <exon e_start="60207" e_stop="60325"/>
            <exon e_start="60497" e_stop="60580"/>
            <exon e_start="61272" e_stop="61348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.209" acc_prob="0.842" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59430" e_stop="59834" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="0.964">
            <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60207" e_stop="60325" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60497" e_stop="60580" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.209" acc_prob="0.842">
            <gDNA_intron_boundary i_start="60581" i_stop="61271" i_length="691"/>
          </intron>
          <exon e_serial="4" e_score="0.948">
            <gDNA_exon_boundary e_start="61272" e_stop="61348" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60325"/>
              <exon start="60497" stop="60580"/>
              <exon start="61272" stop="61348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG : ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG : GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATG : ATTTTTGAAAAGTCTACTCATGTCAATGTAAGCCATATCATCCATGATTTATCATTTGGGCCCAAATATCCAGGTAT</gDNA_template>
            <first_frame> F  N  L  V  L  A  G  L  N  F  W  K  S  *  I  L  Q  I  *  I  G  V  P  W  H  R  H  L  P  S  F  I  L  L  G  *  *  I  Y  P  C  K  L  C  N  T  E  A  N  Y  E  D  I  C  Y  L  S  S  I  S  F  L  K  C  L  Q  F  S  F  S  T  N  S  H  L  F  S  D  S  V  Y  T  L  *  W  I  H  A  Q  A  Y  S  F  F  M  P  F  S  V  I  K  V  E  S  F  C  S  F  A  *  T  V  M  A  I  S  L  A  L  S  I  C  Q  T  L  L  R  R  N  V  K  L  I  N  M  :  M  C  T  K  N  I  M  K  I  Q  T  R  S  I  Y  R  A  L  M  K  N  L  R  I  *  S  R  R  L  S  K  H  W  L  M  G  K  D  A  G :   C  M  E  Y  *  M  S  S  G  L  L  G  I  S  I  Y  P  F  M  G  *  T  F  L  L  L  K  * :   F  L  K  S  L  L  M  S  M  *  A  I  S  S  M  I  Y  H  L  G  P  N  I  Q  V  </first_frame>
            <second_frame>  L  T  W  Y  *  Q  A  *  T  S  G  S  L  K  S  Y  K  S  E  *  V  Y  L  G  I  D  T  F  P  V  S  F  C  *  A  S  E  F  I  P  A  S  F  V  T  L  K  Q  I  M  K  I  F  V  I  C  L  L  F  H  F  *  S  V  C  N  F  L  S  L  Q  I  R  I  Y  F  Q  I  Q  S  I  L  Y  S  G  F  M  P  K  H  I  L  F  S  C  L  F  R  *  L  R  L  R  V  F  A  A  S  L  E  Q  *  W  P  Y  H  W  H  *  V  F  V  R  P  C  *  E  G  T  *  S  S  *  T  * :   C  A  Q  R  T  S  *  R  F  R  Q  D  P  S  T  G  H  *  *  R  I  S  E  Y  D  Q  E  G  *  A  S  I  G  *  W  G  R  M  Q   : G  V  W  S  I  R  C  P  A  G  C  W  E  F  P  F  I  R  S  W  V  E  H  F  C  C  S  N   : D  F  *  K  V  Y  S  C  Q  C  K  P  Y  H  P  *  F  I  I  W  A  Q  I  S  R  Y </second_frame>
            <third_frame>   *  L  G  I  S  R  L  E  L  L  E  V  L  N  L  T  N  L  N  R  C  T  L  A  S  T  P  S  Q  F  H  S  V  R  L  V  N  L  S  L  Q  A  L  *  H  *  S  K  L  *  R  Y  L  L  F  V  F  Y  F  I  F  K  V  F  A  I  F  F  L  Y  K  F  A  F  I  F  R  F  S  L  Y  S  I  V  D  S  C  P  S  I  F  F  F  H  A  F  F  G  N  *  G  *  E  F  L  Q  L  R  L  N  S  D  G  H  I  T  G  T  E  Y  L  S  D  L  V  E  K  E  R  E  A  H  K  H   : D  V  H  K  E  H  H  E  D  S  D  K  I  H  L  Q  G  I  D  E  E  S  Q  N  M  I  K  K  V  K  Q  A  L  A  D  G  E  G  C  R  :  V  Y  G  V  L  D  V  Q  R  V  A  G  N  F  H  L  S  V  H  G  L  N  I  F  V  A  Q  M  :  I  F  E  K  S  T  H  V  N  V  S  H  I  I  H  D  L  S  F  G  P  K  Y  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59738" stop="59834"/>
                    <exon start="60207" stop="60325"/>
                    <exon start="60497" stop="60580"/>
                    <exon start="61272" stop="61346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLQLRLNSDGHITGTEYLSDLVEKEREAHKHDVHKEHHEDSDKIHLQGIDEESQNMIKKVKQALADGEGCRVYGVLDVQRVAGNFHLSVHGLNIFVAQMIFEKSTHVNVSHIIHDLSFGPKYPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59430" e_stop="59834"/>
            <exon e_start="60207" e_stop="60325"/>
            <exon e_start="60497" e_stop="61093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59430" e_stop="59834" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="0.964">
            <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60207" e_stop="60325" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="60497" e_stop="61093" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60207" stop="60325"/>
              <exon start="60497" stop="61093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG : ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG : GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGATATTTTATATTTATAGATTTGATGAGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATAGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCAGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTGCTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTAGAGAGAAATTAGCAATACCATAGTAAGTAAGTTGTACAGTAAGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGCAATACCATAGTTCCTAA</gDNA_template>
            <first_frame> F  N  L  V  L  A  G  L  N  F  W  K  S  *  I  L  Q  I  *  I  G  V  P  W  H  R  H  L  P  S  F  I  L  L  G  *  *  I  Y  P  C  K  L  C  N  T  E  A  N  Y  E  D  I  C  Y  L  S  S  I  S  F  L  K  C  L  Q  F  S  F  S  T  N  S  H  L  F  S  D  S  V  Y  T  L  *  W  I  H  A  Q  A  Y  S  F  F  M  P  F  S  V  I  K  V  E  S  F  C  S  F  A  *  T  V  M  A  I  S  L  A  L  S  I  C  Q  T  L  L  R  R  N  V  K  L  I  N  M  :  M  C  T  K  N  I  M  K  I  Q  T  R  S  I  Y  R  A  L  M  K  N  L  R  I  *  S  R  R  L  S  K  H  W  L  M  G  K  D  A  G :   C  M  E  Y  *  M  S  S  G  L  L  G  I  S  I  Y  P  F  M  G  *  T  F  L  L  L  K  W  S  A  L  L  I  F  Y  I  Y  R  F  D  E  N  T  Y  N  C  W  K  A  C  T  I  A  L  N  S  V  L  L  *  D  I  Y  Q  V  K  L  C  K  Q  L  *  S  L  K  L  G  R  Y  S  W  K  M  L  K  R  V  C  L  R  N  *  I  N  N  P  P  D  S  G  R  G  R  Q  F  F  P  S  A  S  S  V  L  S  S  N  I  L  V  V  Q  V  K  *  K  L  *  F  N  Q  T  C  Y  L  F  *  A  Y  A  *  Q  K  V  D  C  S  K  A  T  F  L  I  L  L  V  F  *  S  M  I  V  C  E  K  K  *  R  E  I  S  N  T  I  V  S  K  L  Y  S  K  F  L  D  S  L  *  N  K  F  R  E  I  S  N  T  I  V  P   </first_frame>
            <second_frame>  L  T  W  Y  *  Q  A  *  T  S  G  S  L  K  S  Y  K  S  E  *  V  Y  L  G  I  D  T  F  P  V  S  F  C  *  A  S  E  F  I  P  A  S  F  V  T  L  K  Q  I  M  K  I  F  V  I  C  L  L  F  H  F  *  S  V  C  N  F  L  S  L  Q  I  R  I  Y  F  Q  I  Q  S  I  L  Y  S  G  F  M  P  K  H  I  L  F  S  C  L  F  R  *  L  R  L  R  V  F  A  A  S  L  E  Q  *  W  P  Y  H  W  H  *  V  F  V  R  P  C  *  E  G  T  *  S  S  *  T  * :   C  A  Q  R  T  S  *  R  F  R  Q  D  P  S  T  G  H  *  *  R  I  S  E  Y  D  Q  E  G  *  A  S  I  G  *  W  G  R  M  Q   : G  V  W  S  I  R  C  P  A  G  C  W  E  F  P  F  I  R  S  W  V  E  H  F  C  C  S  N  G  Q  L  C  *  Y  F  I  F  I  D  L  M  R  I  H  I  T  V  G  K  H  A  L  L  H  *  T  L  S  Y  C  K  I  S  I  R  S  N  C  V  S  S  C  D  P  *  N  *  G  G  I  V  G  R  C  L  K  E  F  V  *  E  T  R  S  I  T  L  P  I  V  G  E  V  D  S  S  F  R  Q  L  P  V  F  Y  Q  V  I  Y  W  W  F  K  *  S  E  S  S  D  S  I  K  L  A  T  Y  F  E  L  M  H  D  K  R  L  I  A  L  K  L  L  F  *  F  C  L  Y  F  D  L  *  *  F  V  K  K  S  R  E  K  L  A  I  P  *  *  V  S  C  T  V  S  F  *  I  V  C  E  T  S  L  E  K  L  A  I  P  *  F  L  </second_frame>
            <third_frame>   *  L  G  I  S  R  L  E  L  L  E  V  L  N  L  T  N  L  N  R  C  T  L  A  S  T  P  S  Q  F  H  S  V  R  L  V  N  L  S  L  Q  A  L  *  H  *  S  K  L  *  R  Y  L  L  F  V  F  Y  F  I  F  K  V  F  A  I  F  F  L  Y  K  F  A  F  I  F  R  F  S  L  Y  S  I  V  D  S  C  P  S  I  F  F  F  H  A  F  F  G  N  *  G  *  E  F  L  Q  L  R  L  N  S  D  G  H  I  T  G  T  E  Y  L  S  D  L  V  E  K  E  R  E  A  H  K  H   : D  V  H  K  E  H  H  E  D  S  D  K  I  H  L  Q  G  I  D  E  E  S  Q  N  M  I  K  K  V  K  Q  A  L  A  D  G  E  G  C  R  :  V  Y  G  V  L  D  V  Q  R  V  A  G  N  F  H  L  S  V  H  G  L  N  I  F  V  A  Q  M  V  S  S  V  D  I  L  Y  L  *  I  *  *  E  Y  I  *  L  L  E  S  M  H  Y  C  I  E  L  C  P  I  V  R  Y  L  S  G  Q  I  V  *  A  V  V  I  L  K  I  R  A  V  *  L  E  D  A  *  K  S  L  F  K  K  L  D  Q  *  P  S  R  *  W  E  R  *  T  V  L  S  V  S  F  Q  C  S  I  K  *  Y  I  G  G  S  S  K  V  K  A  L  I  Q  S  N  L  L  L  I  L  S  L  C  M  T  K  G  *  L  L  *  S  Y  F  S  D  F  A  C  I  L  I  Y  D  S  L  *  K  K  V  E  R  N  *  Q  Y  H  S  K  *  V  V  Q  *  V  S  R  *  F  V  K  Q  V  *  R  N  *  Q  Y  H  S  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59738" stop="59834"/>
                    <exon start="60207" stop="60325"/>
                    <exon start="60497" stop="60610"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLQLRLNSDGHITGTEYLSDLVEKEREAHKHDVHKEHHEDSDKIHLQGIDEESQNMIKKVKQALADGEGCRVYGVLDVQRVAGNFHLSVHGLNIFVAQMVSSVDILYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 152640 bytes spliced alignments in total
$ 66 spliced alignments have been stored
$ 2312 bytes was the average size of a spliced alignment
$ 17376 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1737 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 14:44:55
-->
