<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:22:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724904" ref_strand="+" ref_description="SGN-E724904 [FC25CA04]">
      <seq>gaggaacccttgctcgagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcngtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67458" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67757" g_stop="67882" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="217" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="401" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69426" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="612" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="656"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E724904" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67757" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GAGGAACCCTTGCTCGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712499" ref_strand="+" ref_description="SGN-E712499 [FB05AB04]">
      <seq>ccttgctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67464" stop="69750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67764" g_stop="67882" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="210" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="394" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69447" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="626" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="651"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E712499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67764" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</genome_strand>
        <mrna_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203384" ref_strand="+" ref_description="SGN-E203384 [cLEB-3-D16]">
      <seq>gcacgagggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgttactgtgtggacctaaatagatttagggtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67471" stop="69680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67764" g_stop="67882" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="210" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="394" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69380" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="559" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E203384" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67764" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTG</genome_strand>
        <mrna_strand>GCACGAGGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTACTGTGTGGACCTAAATAGATTTAGGGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326149" ref_strand="+" ref_description="SGN-E326149 [cTOC-16-C3]">
      <seq>ttgctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttanggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67466" stop="69757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67766" g_stop="67882" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="208" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="392" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69464" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="641" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E326149" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67766" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTA</genome_strand>
        <mrna_strand>TTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTANGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290912" ref_strand="+" ref_description="SGN-E290912 [cLET-8-E15]">
      <seq>gctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattccattttatgaatacatgagttagctcaaacttattggttctgtttggacctaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67468" stop="69664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67768" g_stop="67882" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="206" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="390" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69364" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="539" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E290912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67768" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</genome_strand>
        <mrna_strand>GCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCCATTTTATGAATACATGAGTTAGCTCAAACTTATTGGTTCTGTTTGGACCTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711978" ref_strand="+" ref_description="SGN-E711978 [FB03CB12]">
      <seq>ggtagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67471" stop="69815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67770" g_stop="67882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69524" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="697" r_length="309" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E711978" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67770" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGA</genome_strand>
        <mrna_strand>GGTAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319827" ref_strand="+" ref_description="SGN-E319827 [cTOB-12-D14]">
      <seq>tggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaacttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67470" stop="69670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67770" g_stop="67882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69370" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="543" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E319827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67770" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAG</genome_strand>
        <mrna_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAACTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294785" ref_strand="+" ref_description="SGN-E294785 [cLET-17-H23]">
      <seq>tggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaaaggcggaaggaggatcacatccagtggtcagcgggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67470" stop="69551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67770" g_stop="67882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69251" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="424" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E294785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67770" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCT</genome_strand>
        <mrna_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713144" ref_strand="+" ref_description="SGN-E713144 [FB06DD05]">
      <seq>ggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcngaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67471" stop="69712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67771" g_stop="67882" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="203" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="387" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69411" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="583" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="602"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E713144" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67771" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>GGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCNGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341427" ref_strand="+" ref_description="SGN-E341427 [cTOE-23-L10]">
      <seq>gagagaggagatttatctgcagcgaatatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67486" stop="69750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67772" g_stop="67882" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="202" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="386" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69459" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="630" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E341427" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67772" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGT</genome_strand>
        <mrna_strand>GAGAGAGGAGATTTATCTGCAGCGAATATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322609" ref_strand="+" ref_description="SGN-E322609 [cTOB-26-G9]">
      <seq>agagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaatagatttagggtattgttgaattaaaatgtggatgttttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67473" stop="69705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67773" g_stop="67882" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="385" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69405" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="574" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E322609" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67773" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTT</genome_strand>
        <mrna_strand>AGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT-AATAGATTTAGGGTATTGTTGAATTAAAATGTGGATGTTTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271568" ref_strand="+" ref_description="SGN-E271568 [cLEM-23-F21]">
      <seq>gaggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67476" stop="69824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67776" g_stop="67882" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="198" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="382" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69532" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="699" r_length="317" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E271568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67776" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGC</genome_strand>
        <mrna_strand>GAGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347127" ref_strand="+" ref_description="SGN-E347127 [cTOF-25-C15]">
      <seq>tggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttaaggtattgttgaattaaattgtggatgttttgccttttcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67477" stop="69712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67777" g_stop="67882" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="381" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69411" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="577" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E347127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67777" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAAGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307866" ref_strand="+" ref_description="SGN-E307866 [cLEY-20-A13]">
      <seq>aggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67478" stop="69640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67777" g_stop="67882" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="381" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="506" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E307866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67777" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTA</genome_strand>
        <mrna_strand>AGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724903" ref_strand="+" ref_description="SGN-E724903 [FC25CA02]">
      <seq>ggagaaagatctgcagcgaagatggaggcagcaacaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcngtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67478" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67778" g_stop="67882" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="196" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="380" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69426" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="591" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="616"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E724903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67778" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAACAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263570" ref_strand="+" ref_description="SGN-E263570 [cLEG-60-F11]">
      <seq>gagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggaggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67479" stop="69632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67779" g_stop="67882" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="195" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="379" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69332" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="496" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E263570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67779" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCT</genome_strand>
        <mrna_strand>GAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGAGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341283" ref_strand="+" ref_description="SGN-E341283 [cTOE-22-F21]">
      <seq>agaaagatctgcttcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67480" stop="69700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67780" g_stop="67882" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="194" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="378" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69400" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="563" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E341283" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67780" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</genome_strand>
        <mrna_strand>AGAAAGATCTGCTTCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716014" ref_strand="+" ref_description="SGN-E716014 [FB15DE12]">
      <seq>gatagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69514" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="676" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="689"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E716014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</genome_strand>
        <mrna_strand>GATAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716923" ref_strand="+" ref_description="SGN-E716923 [FB18BG01]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatattgcattcaatgcatcattacttcataattataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69511" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="673" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E716923" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACA</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATATTGCATTCAATGCATCATTACTTCATAATTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713617" ref_strand="+" ref_description="SGN-E713617 [FB09AE10]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69447" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="609" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="626"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E713617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715595" ref_strand="+" ref_description="SGN-E715595 [FB14CH11]">
      <seq>gatagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69426" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="588" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="599"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E715595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GATAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716396" ref_strand="+" ref_description="SGN-E716396 [FB16DG05]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69426" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="588" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="599"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E716396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203428" ref_strand="+" ref_description="SGN-E203428 [cLEB-3-P10]">
      <seq>gcacgagctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactgtgagcctaacggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattctatgaatacatgagttagctcaaacttattgtttctgtgtggacctaaatagatttagggtattgttgaattaaattgtggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="69700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69400" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="562" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E203428" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</genome_strand>
        <mrna_strand>GCACGAGCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTGTGAGCCTAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTCTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTGTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277180" ref_strand="-" ref_description="SGN-E277180 [cLEL-3-H8](-)">
      <seq>gcacgagctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttgcccgcatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtgggtcagttgcacgccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67481" stop="68867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67781" g_stop="67882" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68567" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="329" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E277180" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277180" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67781" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACAT</genome_strand>
        <mrna_strand>GCACGAGCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTGCCCGCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGGTCAGTTGCACGCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723934" ref_strand="+" ref_description="SGN-E723934 [FC22CA02]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaactgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcaaagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgagattcagtgcttgtttnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69534" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="695" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="763"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E723934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAACTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAAAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315265" ref_strand="+" ref_description="SGN-E315265 [cTOA-24-E24]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69514" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="675" r_length="299" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E315265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342002" ref_strand="+" ref_description="SGN-E342002 [cTOF-10-G6]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcatttcatgcatcattacttcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69505" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="666" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E342002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTTCATGCATCATTACTTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344231" ref_strand="+" ref_description="SGN-E344231 [cTOF-16-L12]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaactnattggttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctggagtgtgtattgtggcatatgttgcattcaatgcatcattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69499" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="660" r_length="284" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E344231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTNATTGGTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGGAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265789" ref_strand="+" ref_description="SGN-E265789 [cLEI-11-N2]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttaaggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69435" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="596" r_length="220" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E265789" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAAGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343432" ref_strand="+" ref_description="SGN-E343432 [cTOF-19-H3]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactntgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatganngtcattcaatttatgaatacatgagttagctcaaacttattgtttctgtttggacctaatagatttanggtattgttgaattaaaatgtggatgttttgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69406" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="566" r_length="190" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E343432" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGT-TCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTNTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGANNGTCATTCAA-TTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT-AATAGATTTANGGTATTGTTGAATTAAAATGTGGATGTTTTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267073" ref_strand="+" ref_description="SGN-E267073 [cLEI-4-G18]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattgtatgaatacatgagttagctcaaacttattgtttctgtttggacctaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69363" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="524" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E267073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATA</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTGTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356571" ref_strand="+" ref_description="SGN-E356571 [cTOS-21-K24]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattggttctgtttggacctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69362" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="523" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E356571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAAT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGGTTCTGTTTGGACCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310457" ref_strand="+" ref_description="SGN-E310457 [cTOA-9-G19]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaacttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69358" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="519" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E310457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAACTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319874" ref_strand="+" ref_description="SGN-E319874 [cTOB-12-K7]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="69637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69337" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="498" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E319874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAAC</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340069" ref_strand="+" ref_description="SGN-E340069 [cTOF-3-J1]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67482" stop="68927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E340069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716889" ref_strand="+" ref_description="SGN-E716889 [FB18BC12]">
      <seq>aatatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67483" stop="69815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67783" g_stop="67882" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="191" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="375" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69523" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="683" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E716889" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67783" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>AATATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275898" ref_strand="+" ref_description="SGN-E275898 [cLEN-12-K5]">
      <seq>aagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67483" stop="69805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67783" g_stop="67882" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="191" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="375" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69505" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="665" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E275898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67783" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</genome_strand>
        <mrna_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271727" ref_strand="+" ref_description="SGN-E271727 [cLEM-23-H24]">
      <seq>atctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcatttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattccattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67486" stop="69664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67786" g_stop="67882" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="188" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="372" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69364" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="521" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E271727" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67786" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</genome_strand>
        <mrna_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCATTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCCATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282572" ref_strand="+" ref_description="SGN-E282572 [cLER-18-H14]">
      <seq>atctgctgtgaagatggaggcatcaagaagtgtgatattgatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67515" stop="68815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67786" g_stop="67882" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68515" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="274" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E282572" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67786" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGA-A-AGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATG</genome_strand>
        <mrna_strand>ATCTGCTGTGAAGATGGAGGCATCAAGAAGTGTGATATTGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310591" ref_strand="+" ref_description="SGN-E310591 [cLEZ-19-J18]">
      <seq>cagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67491" stop="69750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67791" g_stop="67882" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="183" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="367" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69450" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="602" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E310591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67791" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTA</genome_strand>
        <mrna_strand>CAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734368" ref_strand="+" ref_description="SGN-E734368 [LB12BH12]">
      <seq>cgtagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatattgcattcaatgcatcattacttcataattatacataaatccctgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67494" stop="69824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67794" g_stop="67882" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="180" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="364" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69523" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="672" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="687"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E734368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67794" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>CGTAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATATTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378482" ref_strand="+" ref_description="SGN-E378482 [TUS-48-C23]">
      <seq>tcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcctccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaccagaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67545" stop="68814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67845" g_stop="67882" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="129" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68432" g_stop="68514" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="211" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E378482" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67845" e_stop="67882"/>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAAT</genome_strand>
        <mrna_strand>TCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CCTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGG-AACCAGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203385" ref_strand="+" ref_description="SGN-E203385 [cLEB-3-D16](-)">
      <seq>gaaagatggagcttcctgaatggagtgatatagttatgactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67960" stop="69712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68262" g_stop="68352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="96" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="280" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69216" g_stop="69411" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="476" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E203385" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68262" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>ATGGAGCTTCCTGAATGGAGTGATATAGTTATGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275767" ref_strand="-" ref_description="SGN-E275767 [cLEN-18-C24]">
      <seq>ggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="67998" stop="69811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68298" g_stop="68352" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="239" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69216" g_stop="69511" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="535" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E275767" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68298" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACA</genome_strand>
        <mrna_strand>GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203429" ref_strand="+" ref_description="SGN-E203429 [cLEB-3-P10](-)">
      <seq>aaaggagcttgccccatatgatggtgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="68006" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68306" g_stop="68352" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="231" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69216" g_stop="69426" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="442" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="460"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E203429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68306" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>AAAGGAGCTTGCCCCATATGATGGTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345562" ref_strand="+" ref_description="SGN-E345562 [cTOF-18-F24]">
      <seq>ctacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="68128" stop="69815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68339" g_stop="68352" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68432" g_stop="68615" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="198" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69216" g_stop="69521" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="504" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E345562" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68339" e_stop="68352"/>
          <exon e_start="68432" e_stop="68615"/>
          <exon e_start="69216" e_stop="69521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTG</genome_strand>
        <mrna_strand>CTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234758" ref_strand="+" ref_description="SGN-E234758 [cLEL-6-N6](-)">
      <seq>gaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="68162" stop="69824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68462" g_stop="68615" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69216" g_stop="69520" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="458" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="477"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E234758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68462" e_stop="68615"/>
          <exon e_start="69216" e_stop="69520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCT</genome_strand>
        <mrna_strand>GAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGC-AGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235046" ref_strand="+" ref_description="SGN-E235046 [cLEL-6-N6](-)">
      <seq>tgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0062P09-3YKp6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0062P09.1" temp_strand="+" temp_description="C12HBa0062P09.1  AC217335.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0062P09*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="68997" stop="69824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69297" g_stop="69523" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="228" polyA_stop="243"/>
      <MATCH_line gen_id="C12HBa0062P09.1" gen_strand="+" ref_id="SGN-E235046" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0062P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69297" e_stop="69523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>TGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>48</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="67757" PGL_stop="69534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67757" e_stop="67882"/>
            <exon e_start="68262" e_stop="68352"/>
            <exon e_start="68432" e_stop="68615"/>
            <exon e_start="69216" e_stop="69534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67757" e_stop="67882" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67883" i_stop="68261" i_length="379"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68262" e_stop="68352" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68353" i_stop="68431" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68432" e_stop="68615" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68616" i_stop="69215" i_length="600"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69216" e_stop="69534" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67757" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67764" stop="67882"/>
              <exon start="68262" stop="68352"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67764" stop="67882"/>
              <exon start="68262" stop="68352"/>
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              <exon start="69216" stop="69380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67766" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67770" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67770" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67770" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67771" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67772" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67773" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67776" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67777" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67777" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67778" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67779" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67780" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67781" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277180" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67783" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67783" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67786" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67786" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67791" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67794" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67845" stop="67882"/>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68262" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68298" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68306" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68339" stop="68352"/>
              <exon start="68432" stop="68615"/>
              <exon start="69216" stop="69521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68462" stop="68615"/>
              <exon start="69216" stop="69520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69297" stop="69523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG : ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG : CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG : CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</gDNA_template>
            <first_frame> *  E  P  L  L  E  S  G  E  R  S  A  A  K  M  E  A  A  R  S  V  K  D  V  S  P  H  D  F  V  K  A  Y  A  A  H  L  K  R  S  G  K  :  M  E  L  P  E  W  T  D  I  V  K  T  G  K  L  K  E  L  A  P  Y  D  A  D  W  Y  Y  I  R  A   : A  S  M  A  R  K  I  Y  L  R  G  G  I  G  V  G  G  F  R  R  I  Y  G  G  N  Q  R  N  G  S  R  P  R  H  F  C  K  S  S  G  S  V  A  R  H  I  L  Q  Q  L  Q  N  M  N  I  I  D  F  E  P  K  G :   G  R  R  I  T  S  S  G  Q  R  D  L  D  Q  V  A  G  R  I  A  V  A  C  *  E  R  D  E  F  I  Q  F  Y  E  Y  M  S  *  L  K  L  I  V  S  V  W  T  *  I  D  L  G  Y  C  *  I  K  L  W  M  F  C  L  F  R  I  V  F  L  S  M  S  S  F  A  L  L  V  P  *  S  V  Y  C  G  I  C  C  I  Q  C  I  I  T  S  *  L  Y  I  N  P  *  D  S  V  L </first_frame>
            <second_frame>  R  N  P  C  W  R  V  E  K  D  L  Q  R  R  W  R  Q  Q  E  V  *  K  M  F  P  P  M  I  L  S  R  L  M  P  L  I  S  S  A  P  E  R :   W  S  F  L  N  G  L  I  *  L  R  L  V  S  *  R  S  L  P  H  M  M  L  I  G  T  T  S  E  L  :  L  P  W  Q  G  R  S  I  *  E  E  V  L  V  L  V  V  S  E  E  S  M  V  E  T  R  G  M  E  A  V  H  V  T  F  A  R  A  V  V  Q  L  H  A  T  F  F  N  S  C  R  T  *  T  S  L  T  L  S  L  R   : A  E  G  G  S  H  P  V  V  S  G  I  L  T  K  L  P  E  E  L  L  L  L  V  K  R  E  M  S  S  F  N  F  M  N  T  *  V  S  S  N  L  L  F  L  F  G  P  K  *  I  *  G  I  V  E  L  N  C  G  C  F  A  F  S  E  L  S  F  S  V  C  Q  V  L  P  F  *  Y  P  E  V  C  I  V  A  Y  V  A  F  N  A  S  L  L  H  N  Y  T  *  I  P  E  I  Q  C   </second_frame>
            <third_frame>   G  T  L  A  G  E  W  R  K  I  C  S  E  D  G  G  S  K  K  C  E  R  C  F  P  P  *  F  C  Q  G  L  C  R  S  S  Q  A  L  R  K   : D  G  A  S  *  M  D  *  Y  S  *  D  W  *  A  K  G  A  C  P  I  *  C  *  L  V  L  H  Q  S  C :   F  H  G  K  E  D  L  F  E  R  R  Y  W  C  W  W  F  P  K  N  L  W  W  K  P  E  E  W  K  P  S  T  S  L  L  Q  E  Q  W  F  S  C  T  P  H  S  S  T  V  A  E  H  E  H  H  *  L  *  A  *  G  :  R  K  E  D  H  I  Q  W  S  A  G  S  *  P  S  C  R  K  N  C  C  C  L  L  R  E  R  *  V  H  S  I  L  *  I  H  E  L  A  Q  T  Y  C  F  C  L  D  L  N  R  F  R  V  L  L  N  *  I  V  D  V  L  P  F  Q  N  C  L  S  Q  Y  V  K  F  C  P  F  S  T  L  K  C  V  L  W  H  M  L  H  S  M  H  H  Y  F  I  I  I  H  K  S  L  R  F  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0062P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67760" stop="67882"/>
                    <exon start="68262" stop="68352"/>
                    <exon start="68432" stop="68615"/>
                    <exon start="69216" stop="69288"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLLESGERSAAKMEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAASMARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKGGRRITSSGQRDLDQVAGRIAVAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 176 chains have been computed
$ 
$ memory statistics:
$ 100496 bytes spliced alignments in total
$ 48 spliced alignments have been stored
$ 2093 bytes was the average size of a spliced alignment
$ 6200 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 6200 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 201 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:24:54
-->
