<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:24:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="21973" stop="32649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31184" g_stop="31260" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31261" i_stop="31894" i_length="634">
            <donor d_prob="0.000" d_score="0.75"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31895" g_stop="32351" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="534" r_length="457" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31184" e_stop="31260"/>
          <exon e_start="31895" e_stop="32351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCGTACCAATCAATACTAGCCTATTAGATAGTATACACTAAATCTATGTTAATAATTCTTTTCCTATTAACTACCTCTTTGGTCCGGCAAGTAGCATTAAGGCGAGTTCTAATGTTGGCCATCGTTAAAAAGACTTCTAAACGAAAGAATTATTAATACATGCAAGACACTATTCAAGAATTGTTATTTTAGTTAGGGTTTATCTCATTATTTTCCTATGGTTCCCACAACCCTAGTTCTGGAGTTTAGTTACTCATAGCCATAATCACAATATTCAAAGATGTTATATAAGAATTCATGTACTTACTTCAATGAGAAAGATTAAAATCCAAAAATTTGCTTGATTAATCACCAAAAATCACTTGCAAGAATCTCAAAATAATCAATAATCTCACAAAGTCTCAAAGTAATCAATGATCAATAATCCAGAGTCTAATAATATGATGTCTAACAATACAGAGTCTAACCTCAAAAACGAGGTTTTTTGAACTATTTATAAAAAAACAAAAACCTAATTAAACAAGGATTCTAATTGCTGGAAATCTGCCAAAACGCGGCTGGGTCGACGGACCTCGCGATGGACCGTCGTGGTCATGACGGACCGTCGTGGACTCTGTCGTCCCATACTTGTGTAACTCTCTTCATTCCCCTCGACGGCAAGTATGACGGACCGTCATAGGCACAACGGTCTGTCGAGGGCCTTCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCGCGACGGACCGTCACAAGCTTTGTAATCCCACACTTGGTCAGACTTCTCCATCTTCCTTCAGCAGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCACGACGAACCTTCATAAGCTCCGTAAGTGGTCTCTTCTGCAATTCTTCGCTCAAAATCTCCGCATTCAGATTTGGACAGA-TTCCTGCAAATCAAAGAGAAACTTATATAAAAATTAGAACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACAGTATATCATCACGACACTT</genome_strand>
        <mrna_strand>TCGCGAGGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCACTTGGCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224244" ref_strand="+" ref_description="SGN-E224244 [cLEL-19-L18](-)">
      <seq>gctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctttcaacctctccgtttgaattcttcatcgcctcaattcggatacaatccaaatatgggtgcaaatgatcatgaggttaatgcagcaacaactgctcataatattaatggatttattccagggtggatgctctaatggattaacatagtaatatttgttctcttgtattgtatgaactaatataattaatgttgtttttgtggtggccactaatctgtatttagcaacttacaattattgttgaagtagtgaggagaataattcactcaacttgttataaaaataacaactgccggccccatctcaactatgcactatgacatcttggaatttatgatatatatatgtatctaatatttttgtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="41293" stop="39172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40993" g_stop="40860" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39798" g_stop="39473" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="460" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="478"/>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E224244" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40993" e_stop="40860"/>
          <exon e_start="39798" e_stop="39473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAG</genome_strand>
        <mrna_strand>GCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224144" ref_strand="+" ref_description="SGN-E224144 [cLEL-19-L18](-)">
      <seq>caaatatgggtgcaaatgatcataaggttaatgcagcaacaactgctcataatattaatggatttattccagggtggatgctctaatggattancatagtaatatttgttctcttgtattgtatgaactaatataattaatgttgtttttgtggtggccactaatctgtatttagcaacttacaattattgttgaagtagtgaggagaataattcactcaacttgttataaaaataacaactgccggccccatctcaactatgcactatgacatcttggaatttatgatatatatatgtatctaatatttttgtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="40090" stop="39172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39790" g_stop="39473" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="336"/>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E224144" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39790" e_stop="39473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAG</genome_strand>
        <mrna_strand>CAAATATGGGTGCAAATGATCATAAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTANCATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396666" ref_strand="+" ref_description="SGN-E396666 [TUS-44-A1](-)">
      <seq>aaaaggagaaaagttggggagaggcaaaaaaacaatttaaaaacaaattggaagaaagtgcagctagaatttcacttggattgtcatggggaaacccccgcgggcaaacaatggaatacaattgactccctccacaaaatattgcacaacctttttttcaacctttccgtttgaatttttcatcgcctcaatttggatacaatccaaatatgggggcaaatgatcatgaggttaatgcagcaacaactgctcataatattaatggatttattccaggggggatgctttaaaggattaacatagtaatatttgtttttttgtattgtatgaaataatataattaatgttgtttttgtgggggcccctaatttgtatttagcaacttacaatttttgttgaagtagtgaggggaataattcactcaacttgttataaaaataacaactgccggccccatttcaaatatgcactatgacattttggaatttatgatatatatatgtatttaatatcctttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="41321" stop="39172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41213" g_stop="41209" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.899" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="47" r_length="42" r_score="0.738"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="0.74"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41008" g_stop="40860" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="196" r_length="149" r_score="0.893"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39798" g_stop="39479" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="516" r_length="320" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="566"/>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E396666" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41213" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40860"/>
          <exon e_start="39798" e_stop="39479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTT</genome_strand>
        <mrna_strand>AAAAG..............................................................................GAGAAAAGTTGGGGAGAGGCAAAAAAACAATTTAAAAACAAA................................................................................TTGGAAGAAAGTGCAGCTAGAATTTCACTTGGATTGTCATGGGGAAACCCCCGCGGGCAAACAATGGAATACAATTGACTCCCTCCACAAAATATTGCACAACCTTTTTTTCAACCTTTCCGTTTGAATTTTTCATCGCCTCAATTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCCAAATATGGGGGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGGGGATGCTTTAAAGGATTAACATAGTAATATTTGTTTTTTTGTATTGTATGAAATAATATAATTAATGTTGTTTTTGTGGGGGCCCCTAATTTGTATTTAGCAACTTACAATTTTTGTTGAAGTAGTGAGGGGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATTTCAAATATGCACTATGACATTTTGGAATTTATGATATATATATGTATTTAATATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389663" ref_strand="+" ref_description="SGN-E389663 [TUS-4-M6](-)">
      <seq>agatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattctcggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctttcaacctctccgtttgaattcttcatcgcctcaattcggatacaatccaaatatgggtgcaaatgatcatgaggttaatgcagcaacaactgctcataatattaatggatttattccagggtggatgctctaatggattaacatagtaatatttgttctcttgtattgtatgaactaatataattaatgttgtttttgtggtggccactaatctgtatttagcaacttacaattattgttgaagtagtgaggagaataattcactcaacttgttataaaaataacaacggccggccccatctcaactatgcactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="42229" stop="39222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41929" g_stop="41866" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="164" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="206" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="248" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41008" g_stop="40860" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="397" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39798" g_stop="39522" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="674" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E389663" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41929" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40860"/>
          <exon e_start="39798" e_stop="39522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTAT</genome_strand>
        <mrna_strand>AGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTCGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACGGCCGGCCCCATCTCAACTATGCACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550368" ref_strand="+" ref_description="SGN-E550368 [TUS-5-M6](-)">
      <seq>acaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattctcggagaggatttgggcgcactaaactcgaaagatcttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacagctaacaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctttcaacctctccgtttgaattgttcatcgcctcaattcggatacaatccaaatatgggtgcaaatgatcatgaggttaatgcagcaacaactgctcataatattaatggatttattccagggtggatgctctaatggattaacatagtaatatttgttctcttgtattgtatgaactaatataattaatgttgtttttgtggtggccactaatctgtatttagcaactgacaattattgttgaagtagtgaggagaataattcactcaacttgttataaaaataacagcagccggccccatctcttctatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="42220" stop="39225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41920" g_stop="41866" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="155" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="197" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41008" g_stop="40860" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="388" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39798" g_stop="39525" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="662" r_length="274" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E550368" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41920" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40860"/>
          <exon e_start="39798" e_stop="39525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCAC</genome_strand>
        <mrna_strand>ACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTCGGAGAGGATTTGGGCGCACTAAACTCGAAAGATCTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAGCTAACAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTGTTCATCGCCTCAATTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTGACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAGCAGCCGGCCCCATCTCTTCTATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550011" ref_strand="+" ref_description="SGN-E550011 [TUS-5-M6]">
      <seq>gttagagacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacnaacaatgggatacaatcgactccctccacaaactactgcacaacctttctttcaacctctccgtttngattcttcatcgcctncattcggatacaatccaaatatgggtggcaatgatcatgaggttaatggcagcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51841" stop="39451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51541" g_stop="51332" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="351" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="493" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="535" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41008" g_stop="40860" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="684" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39798" g_stop="39754" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="730" r_length="46" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E550011" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51541" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40860"/>
          <exon e_start="39798" e_stop="39754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAAT-GCAGC</genome_strand>
        <mrna_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACNAACAATGGGATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTNGATTCTTCATCGCCTNCATTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCCAAATATGGGTGGCAATGATCATGAGGTTAATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389922" ref_strand="+" ref_description="SGN-E389922 [TUS-4-M6]">
      <seq>gttttacacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaactaaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacnaacaatggaatacaatcgacttcctccacaaactactgcacaacctttctttcaacctctccgtttgaattcttcatcgcctcaattcggatacaaatccaatatgggtgcaaatgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51841" stop="39467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51541" g_stop="51332" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="351" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="493" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="535" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41008" g_stop="40860" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="684" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39798" g_stop="39767" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="716" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E389922" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51541" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40860"/>
          <exon e_start="39798" e_stop="39767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGGGTAAGTATCTTATTTTATATGACTTAGTTTGACTTGACATAAAGTTTAATAAAGAAAGAAAGACTTTTAAAACTTATAGTGTAAAATAAGTGAATAGATATATATGTGGTTGTACTAACACTACAACAAAAATAATTTTCAGCGGCATTAAATATTGACATTAATAATGAGTGCTAAAGACTTTATCGGTATTAGTTAAGTGTCATTAGGATCAATGTCGTTAAAGGCTTCACGGACATATACAAAGAGTGACAATTGCCGCTAATGATTATTTTTGTTGTAGTGAAAATGAGTATTTTAAAGTTAAATTGTTACATAATATAGAAATATGTCAGAAACAGGACAAATATACCACCGAACTATCATATATGTTATGGAGATATTCTCAGTCATACTTCTGCGACATTGGTACTCATGTCGTCCAAAAACTAGAACATATATATACCCTTTATATATTAACGAAGATACAAGTGTCATAATCTTATGCACCGATTCGATATTTATTAAATATCGAATCGACGGATAAAATTATGTCACGTGTCCCTATTAAGTCTTCTATTAGAGTAAAAAGCATATATTCTCTAGTTTTTGAACGAAAAAAGGTATTAATGTCTCAAAAGTATAACGAAAAGCATTTGCATACAATTTATGATAATTTGGGGCATATTAATTTATCATTCCCCCTTTTTTTGGCACTGATTAAAAAGAAAAAGAAAGTTATAAAAATTGGGATAGAGGGAATAATTGTTTCATAGGGAAAACTTAGAAGCTTCTCAGTATGTCAGTGAGAATGTGTTTCCTAATTAGTGAACTATGGTTTGGTGAAAAATAAAGAGAAAAAAATCAGTACAAATTTTCCACTGATTAGCAATGAGAAAAATATTTGTTTCTAGTAGTATGAGGAGAGGATAGTCCGCATAAATAATCCTTAAATTTGTGGATAAATAAACTATTTTCAATAGATTATCGTCTCAAAATAAAATAAAATGATTGCAAGAAAAGAATAATAGGTATGCTGGTAATATGTATAATACACTCAAATTTATTTGCTGTCCATGCAGATACAATCCAAATATGGGTGCAAATGATCATG</genome_strand>
        <mrna_strand>GTTTTACACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAACTAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACNAACAATGGAATACAATCGACTTCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAATCCAATATGGGTGCAAATGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396264" ref_strand="+" ref_description="SGN-E396264 [TUS-44-A1]">
      <seq>gttagagacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctttcaacctctccgtttgaattcttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51841" stop="40571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51541" g_stop="51332" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="351" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="493" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="535" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41008" g_stop="40871" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="673" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E396264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51541" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCG</genome_strand>
        <mrna_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393945" ref_strand="+" ref_description="SGN-E393945 [TUS-39-M18]">
      <seq>gttagagacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51841" stop="40597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51541" g_stop="51332" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="351" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="493" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="535" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41008" g_stop="40897" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="647" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E393945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51541" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTC</genome_strand>
        <mrna_strand>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376783" ref_strand="+" ref_description="SGN-E376783 [TUS-19-K18]">
      <seq>ttagagacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagcaaataaacaactaaaaaacaagctggaagaaagtgcagctagaattccacttggattgtcatggggaaataatggaggacaaacaatggaatacaatcgactccctccacaaactactgcacaacctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51840" stop="40599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51540" g_stop="51332" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="288" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="350" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="450" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="492" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41089" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="534" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41008" g_stop="40899" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="644" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E376783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51540" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41089"/>
          <exon e_start="41008" e_stop="40899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAGGTACATATCTATATATGTGTGTTAATTAATTAAGTTGATTTTGTATTTTTGTTTAATGAATAATTGTTTGTGATCATCAGCTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTT</genome_strand>
        <mrna_strand>TTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG................................................................................CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230981" ref_strand="+" ref_description="SGN-E230981 [cLED-5-M21]">
      <seq>ttagagacaagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggatttgggcacactaaactcgaaagaacttgagcagcttgagcaccaattggatgcatctttgaagaaagttagatcaaaaaagactcaatctatgctggatcagctggcagaccttcaagaaaaggagcaaatgctggaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51840" stop="40904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51540" g_stop="51332" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="288" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="350" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41693" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="450" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41250" g_stop="41209" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="492" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41130" g_stop="41111" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="512" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E230981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51540" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41693"/>
          <exon e_start="41250" e_stop="41209"/>
          <exon e_start="41130" e_stop="41111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGGTATATCCAAATACTATAACTTAAATATATTGTAACGATTTAATTAATAGCATGTGTCACGTTCATCTATTCTTTAGTCACAATATATAGGGGCATGTCCTTAACAACGTGCCATGCCTCGATAGTCATTTTTGTCTTTTTGTGCGTATGAATTTAACTTTGACACAAATTTTTGTAGTAATAATAACTCATGCTTTAGCATCTTAGGAAGCAGTCATATGAAAAACAGAAGCATATATATATATTACATGAGTTAATTTAATTTAATATAAAATTTAATAAAATTGTGTCTCGCTATAAATAATTTTATTAAAAAATTATATAAATATATTATTTTTTTAACTGGCCGCAAAGTTATATAAATTGATAGAGAAAGAGGTTTTGGTGTAAGGTTCATTTTCCAACAATTAGTTTTATAATTTGTAAGTGCACACTTTATCAGACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAGGTACACTGCCTTAACATTACAAAATTAATTTATTTCATCAAAAGCATATCATAAAATTCTGACAAATAAATATATTAGGAGCAAATGCTGGAAGAAGC</genome_strand>
        <mrna_strand>TTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG..............................................................................GAGCAAATGCTGGAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378462" ref_strand="+" ref_description="SGN-E378462 [TUS-44-A1]">
      <seq>aagaaaagagagaaaaatgggaagaggaagagtagaactaaagagaatagagaacaaaataaacaggcaagttacttttgctaagagaagaaatggacttcttaagaaagcttatgagttatctatactttgtgatgctgaagttgctctcatcatcttctctagccgcggaaaactctatgagttttcaagtgcttccagcatgatgacaacacttgaaaagtatcaacaatgcagttacgcatctttggacccgatgttaccggttagtgatactcagatgaactacaatgagtatgtgaggctaaaagctagagttgagctccttcaacgttctcaaagacatattcttggagaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="51832" stop="41474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51532" g_stop="51332" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42447" g_stop="42369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="280" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41927" g_stop="41866" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="342" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41792" g_stop="41774" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="361" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E378462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51532" e_stop="51332"/>
          <exon e_start="42447" e_stop="42369"/>
          <exon e_start="41927" e_stop="41866"/>
          <exon e_start="41792" e_stop="41774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGGTATATATATATATACATATGTTTTTCTTCTTTTTGTGTGTGCGTATGTGTTTACTTACTTTCATTAATTAACTCAACCATATATATACATCTCTCACCTCAATTATATATATGTTTGAGATCTGAATGTCTACGGACTCCATTTAGGTACATATCTTTGTTTAGATCATAAATCATCTATCTTCATTCCTAAGATCTACTAATATATATGTATAAGAAGATCCATCCATCTATTAGGTTTTTCAACAACATATACAGTGAAATCTTATATGTGGGCCCACGTATAGCCATATGAGAAAATAGTGTGCACGTAAACATTATCATTACTTAATTATAGGAATATACATCCATTAGGTTTATCAACAACAATAAAATCCTCTAAATGGAGTCTAGTCATAGGTCTAGCCGTTTGAAAATGTAAAATATATGCCGATCTTATCACTATGTCATAATAATAGATATGTTGTTATTGAAAGATTCTCAATCTTTTTTTTTCTTCAAGGTAGAGATTCTTAAGTGGATTCATGTTTTTTTTATCAAAAAAGAAAAAAACAAAAGTGTCCATTTGTTCATCTAATGGGTTTTCCATGTTACCAATTCACTACACTGTTGAGATTTGATTATCAGATGTGTCAAGTTTCGTTTGGTTCCCTAGAAGGGAGAAAAGGCTGCTTATGCAGGCAGGGTATTAAAGATGATATTAATATCTGCAGTAATCAGTAACAGAATATATAAACTTAATAATAAACTTGAAGGTACTTAATTATCCAGCAGATAATCTTCTGTCTCACCGTACACTTTTGTTATATCATAAGCATAAGAATTGTTTTATCAAATATTACCAAACAAAACTTAGTTTTGTTTGGTAATATTTTATAAAATATGTTACCGAAAGTTACTTCCTATAACATATTTTATAAAGAAAAAAATTAAAAACTCCATATACCTAAGAAATGTAACCCCCCCTCCATAACAACAATTTAACAAAAATAAAAACCTACTTTTTTTGAATTTGGTAAATTAGTTTTCTATCCTTTTTAGTAACTTCCTTTCTTATTTTCTTTTTATATTGGTAAAGTTTAATATTACACATTATTTTAACATGTTATAATTTTTTGTGATGCTTAATTATTTGATACATGTAATAAACCATATATTAGAGCTATAAATCAATGACAATGCATGTAGATACAACTCATTTATGATATATTTTGTTTATATATATAACCAATTAGATAATTTGTCTGCGCTTTGTGCAGTCATAAATAATAATTGCATTGAACTTGCAAATATTTTTTTTTAATATCCATACATTAAAAAAAAAGAAAGAGGAAAATTGGTTCCTAAAATATTAGCAATATTCAAACATTTATTTGATTATTAATCATTATCACATAACTTAAGAACGTCTAATGAATGAATTATTCACGAAATAATAAATCATTGGTTCTAAAAAGGAATTTCGTAATAAAATAAAAATTTAAGTTACCATATTCAAAAAAAGAAATTGTGCTTGAACATGAAAATAATTATAATTTTTGAACTTGTATAATGAATTTCTTCAATTCATAAGTGGGAAATTTCATATTTATGTAATAATAGATAATATGTAAGCTCTAATATAGTACTTTAGGTTATAGAATTTAATATAAAATATCAAAACATGAATTCTTGAAATTGAGTAGAGTAATTATTTTCTGCACAATGAATCGGAGACAATAACTTTGAAGAAATATAAACAATAGAGTTCAAAAGATGTAGTCAAAAACAACAATTAATATCATAAGAATAAATTAATGAGTGTAAAAATGCATACCACGATATGTAAAAACAGAATGGAATATAATAAAAAAAATCGAGTTCACTGAATACACAATGTTCCTTTAAGAAAATTATTCTCCTCCAATACCAACGAGATTACATCCTCTAAGGATGGAAATGATTTCATTCCCCAACTTATCCATATAAAAATAGTGGTGTTAGTATGTAACTCAATAGGAGTAAAATACACAAATATTTAATTTTGCGAAAGTAGAAGAAGAAGATCATATTTTTTTTTTAAAATGAGAGGATATATCACTATTTTTAAACAACAAAGGGTAGTGTTAACAAATTTTTATTGTGTCTTGTCTAAAAGGTTACAGCTATTTGAAAAAGTTACAACACTTCGAAAAGTGAACAACATTTCATAAAAGTCGTAACTTTTCATAAAGTCGTAACTCTTCATAAATGTCGCAACTCTTCATAAAAATTACAACTATTGATAAAAGTCACCACTCTTGATAAAGATCACCACTCTTCATTGAAGTTGCAACTTTTCATAAAAATCACATCTTTTAATAAAAAAGAAAGACTAGTTTTTGGAATAAATTAATTTAAAAGAAAATTTTTGTTTGTGGTGGGGCGCCAAGTAGGCAGGCGTAGGGTTCTTTTTATATAAATATATATGATATATGATTCAATATTTGATATATATATATATAGAGAGAGAGATGACAATATAAGACAATTGCAAAAAATAAAATAAAAAACTAATCGAGTAAGTAGGCAAAAAATTATTTATAAAATATATGTAGAATTTCTTTATCAGATATGACTGCCCAAATCTTATATTCAAACTAAAATGCAAGATCAATGGTGCTATATATAGGGTTTTACACAAAAATCAAGATCTAGTCTTGCAAATTTAAATAAAAAACAGTGGTTTACGATGAGATAATGTAGCTTTTGTAAACAATAAAACTAGAAAAATAAATGCAAAGGCATTTTAAAGGATATAATAATGAAGATCAAAGGCAGAGAAGGGAAGAGGCAGCAATATAATGAAGGTAACATCATGGTTCCATTCTAATATATATGCTATTTTTCTTTAGTAAATTTCAAAAATAATGATACATTTTCATATTTGATAAATATTTAATGATACTATCAACATTTTATCTATATTGAGTTCCATTTATTTGACCAAAACCTCACAAAGATGTGCTCTTCGATCTATTCAAAATTTATTCAATTTAAGGATAGCTTTAAAACATGACAAAGTTTTCTCATATATTTCTTAAATTTTATATCCAGTCTAAATACGTATATAAACTAAAATGAAGAGAATAATATGAAGCTTTATTTGATGACATTGTTGAAATAACCAAAAGCTATAAGTGATACAATAGTAAATTTACCATTGGTCAATTCAGAATTATTTAAAAGCTAAAAAAGTCATATAAGTTGGGGTTGCTCAATGTATAGTTTTTGGCTTGTTTTAAGCATTTTAAAACTTTTTTTAAGCGCTTTTTAACATTGCTAAACACTCAAAAAATGATAAATAGTATTTAAATTTGATATGATTAGCTTAAAAGTGAACTCATATACCTTCAAAGTAAAAATCCCCAATTCGAGCTTTCAAACCACTTGATTTTGTGGATGAAATTATACTGAAGTTGAATATATCACTATTTATAGGGGTTAGTGAACTAATACCTTTGATTATTTGGTAGAAATATGTATCTTAGATCACCCTAATGAGCTCCCACTTTTAAAATAGGAAAAACCTCATATGAAGTTCATCACTGTTCATTATATATCACTTTTATTCAAAAACGTTTACAAATGTTCATTGTGACTAAATACCCTTGAGTGTCGAGTTTTCACACCAATAAGGCCTAATTAATAGGTAAACAAAACTATGTCAATCTTCAAAACGCAAATCTAATTATATTTTTAACAAGATTAGAGGTATATATACATATTCTCTTATGTTAACTCTTATTCATTATTGAACAAACTAAGTAAGTGTACCCAAGGTCTCAAACAACAGTTGGTACATTCTTTGTATGTCTTCCTTTGTCTCTTAATAGTCGTCTCCTCCTGTCGATGATTCCTCCAAATACATTAATCAAAGGAAAATCTTTCGCCCTCAACTTGCAAACTTGTCTATCTAAAATTGTTAACAAAGTTTCTTCATTAGAGAAACTATGATTTCTTGAATGTAGCAATTTGATGTGCCATGACTATCATCTTGATCAACATGCTTCTTAACCATCAAAAGATCCTAAACTAGATGCATGTCATGTTAGGAGACATATTAAGCTTGTATATAACTACACCAACATGCTTTAGGATCTCATAAGATCCAAAATTTCTTATTTGGGAGATTTTCAATCCAACAACCATCATAATGAGCAACGTGATGTTATAACATCTCTCTCACACTGCCAGAACAGTCTTATACCTTGTCGGAGTGAAGGACATCCTTAACTAAGTAGATTCACTAAGCTATACTTAAAAAGCAATAAGGAATCATCTAAAATGTGTGACTCTTAACCCATATTGGCATACATGGTTTATGGGGGTTATTAATTGTCTGAACACTCCCCCATATAAATCAGTGATCAATATTAATCCCAATAATATACACTATTATGATTTGAGACTACACCCTGGAAGTGGCCGGCTCTCAAGAACCATTGCTGATCTCCAAGCCAAACCCTCATTCTGGTTGACTACAAGCTGAAGGCAAACTCAAGTATACAAAGCTTAAAACATAATAAAAATAATATACTCAACTCGCCACAAAATAGGCATTTAAGTCTTTAAAACATTTTTAAAAATAAATGAAACAAACTTCTCAAACTGTAATGTATATCTATGAAGCCTCTAAATGAAAAAAATGAAGGCAGATGAGACATACGGCATCCTAACAACTGATATAACTAAGAGTACAAGTGGAGCCCTTCGGATGTAAGGAGGCTCATCAAAGCTAATGTGAACTCCATGTGGTATCAATGAAGCACCTATTGATGACCGTGAATACATGTATCTGCATCATGAAACGATGCAGGCCAAAGGGCTTAGTACGTGAAATGTACGAGCATGTAAAGGGAATTCAAATACATAAACATAGGCTTGAACTTTGATATAAAGGAAACATACTTACCTATTTTTAACTCAAGAATAAAAAACATAGTTCAACTCAATGAAAAGACACTCAAGTCAGTGAAATAGGCCGCAACTCAATAATAAGATATTCGACTATGGGTAATCAACTCTGGGTACTCTATTCAATATAAAGTAAGAATACAAATGCATTATATGGAAAGACTTTAAAACGGTAGAAAACAACTCAATGTATTGAAAATTCAATAGTAAATTAGTTTGTATGTAAGGAACAATATAAACTTTGTTTGTATATGAAAATACAAAATAAACTTTGTGTATATAAAAGTACAAAATATCTCTGTGAAAGTTTCTCTAACCAACAACCATCACTATGAGCTTTCTGATAATACCACGTTTCGCCCATGATGTCAGAACTGTCCTATGATTTTCCAGTTCATAAGACCTACTCACTAAGTGGATCCACAAGTCTATGCTAAAAAATATTTAAGGAATCGTCTAAAAAGTATGACTCATTCTACCCACGTTGGCTACATGATTTATGGGGGTCGTAAGTTATCTAAACTCTCCTCCATATCGATGCGTAATGCTACTCACAAATATACTAGCTCACATGTTTAAAAATATAACTCGTTTTGTTTGAGATCATTACTCAAAATCCTTCTCTTAAAAGAGATGATACTCAAACTGCTCAAAACTCTTTTGGAAATCTCAAATTCGTCTCATCTTAAATGTAAAAATATTTACTCTTGGGAATACATAGTTATCATATATCATTTTAAAGAAAATGAACTCAACTCTGTTCTTTCTCAACTCAAGTGCTCAGTCTTAAACCAAATTAAAAAAAAGACTTCTCAAAATAAAGTTTATGTCGAATTATGGACGTGAACAATTCAATTCAAAGTTTTCGATAACCATAACTAAAACTAAATACTCGAGACTCAACATCTTAGAACTCAAGAACTTAAATGGTAATACTTCTTTCAAGAATGCTCGACTCAGAAGGTTAATGCAGAATAATGTGCATGAATTACTCAACTAAAGGACTCACTGATACTACTCAATCTCAAGATTGCTCGACTCGTAGGGTTAATGCAGAATTATGTGCATGAACTACTCAACTCAAAGACCTTCATAGGTAACATGTAGTAGCCCCATGATTTGGAATATAATCCCAAAATGATTAGGAACTCAATACTCAGGACTTAGAACTTGAAGATAATACTACTTCTCTCAAAGATACCCAACTGACGGAGTTCATGCAGAATTTATGGGCATGAACTACTCGACTCAAGAGTCTAAAACACAATATGACACTCATGTATATAACTCTTCTCATTCTAATACTTGTTTTCTCAAAACTCGGTTTAACTAAATAGTTGATCTCAAAGGATTCACAATTGAACTCAAAGACTTTCTTTGACTCCACTCTTAATTCTCTCTTAAATTTGTATTTGAATTATGAATTTAAGAGTTATGATTCATGATATGGGGAATCTCAATAACAATATAGAAATTTGATAATTAGGAATAGTACTTTTAAAAGAAAACATGAATTCAACTTAAAATCAACTTATCTAAAAAATATTCAAATATAGGGAAAGTATCCTAGACTACTGTGCTACTGATCTGAAAGTAGATGTAGGATGTGAGGATGAACTAGTCCAACACTATGATAGCCTTACATACCTGGAATAACGAGGTTCTTGGAAAATCTTCACTTGAAGAAGAACTTGATTAGAAGCCTTGAAACCTAGCTTGAAGGTAAACAATCAAGAAAACCTTTCTTAAGATTCTTGAATTAGTTTATGAAAATCTCTATGACCAAGCATTTTGATTTTCACTAGTGATTCATAATTGTATGGAGGAATTTGAATTGAAAAAGATGAAATGCTTGGAGAAAAGCTATCTTTGAAGAAGCTTGAAAAAGATTGGAAAGTCCTGTACTTTGATTTTCCCTTAGGATTTTGTCTTAGGGTTTGAGATAGAAAAGAATGATGGACTAAAAGATGAAAATCTAATTGTTTGGATCCTTTTTCAGCCAAGAAATCCGTTTAGGGTTTTCTTGGAGACAAACAAAATAAAAAAGACCATTTTTAATATTTTTCCGTCGGCTAATTCGTAATAACATTGTATCATGTTATTGAAAGAGTCATAACTTTTTACTCAAAAATTGGATTGATGCGAAATTAGTGGTGTTGGAAAGTAGATTCAAGTACCTCTAATTGGATAGGTTATTCCCTACATAAGTCTTTATATTCTAAAAGATATGGTTGTTTGCACTTGACCTAAGTAGAATTTTACATGAAAACTTAATAGAGAAGGAAACTTCAAGAACTCATCAAGAAATTTCAATTGCTCAATATTTATGGATAAATTTGTAGAAGAAACTCATGATTGACATGCGGGTGAATAAACCCAACACTATGGAAGCTTACATACCTCAAAGAACTAGGTTCTTGGCGAAATCTTGAATTTCTTCAACGAACGCTTGAAACTTTGAACTTTTTCTCTTCTTGAACTCTCAACTAAAACCCTAGGCGTATATTAGGATTATAAAAGTTAACATGATAGGATTAGACCTTTAAAAACTTTCTAAAATGAATTAAATCTGATTTAGCATGAAAAAGACCAAAATACCCCTTACTATTTTCGGATAACTTTTCTTAATTGGACTGCCTGACTTCAAAAAGGTATATCTCACTCATCCGACCTCAAAATTTAGCAAATTCAGTGGCGTTAGAAAGCTAATTTAAACACCTTTCATTTTCCATCTCATGGCACACATAACTCATTCTTTAAAGAGAGCTATGATCGTTCAAATTAACTCAAATCTTAGAAGAATTTAGGAATGTCTTGAACGAGCTACATCTAGTGACCTTAACACTTTGGAAAATTTTAAATTTCTTAGTAAAAACTTACTCACTATGAAGGATGGTTCAAGTCTTAGCTCAAAATTTTCCTAAGTTGCTATATATACTCATGCTCATATGTTTAAAACCAAAACCCTTCCTCGATTTGAATTAATTACCAAAAAGATTCTCTTAAAAAGATAATGCTCAAAACTCCCCCTAAACTCATTTGGAAATCTAGGTTTCCCTTGTTTTAAATATAAAAACATTTACTCTTGGAAATATTTAGTTCTCAGATATTCACTTGAAAAAAATTAAACTCGACTCTCATCATCTTCATACTCAAGTGCTCAAGTCCTAAAACAATTTATAACTAATTGTATAAGACTTCTCAAAATAGGGTTCATTCCGAATTATGGACGTGAACGACTCAATTCAAGGATTTCAATAACCATATATATAACTCAATAATAGGAACTCAACAACTCCAGAACTCAATGATACTACTCATCTCAAGAATGCTCGACTCACAGGGTCTTTGCGAAATTATTGGGCATGAACAACTCAACTCAAAGACCTTCATTTATACCATATGGTAGTCCCATAATAGGAATATAATCCCAAAAAAATTAGGAACTCAATACTCAAAAACTTAGAACTCGAAGATATTACTCATCTCAAAGATATTCAATTTATGGAATTCATGCTGAATTATGAGCATGAACGACTTGACTCAAGGATCTCAATAATAATGTAGACTCATGAATACACTCTTCTCATTCTCATACTCACATACTCGAGTATTAAAATAAATTATAAGTAATTGCAGAAGACTCCTTGAACAGACTCAAAAGGACTCCTTCGAATTTTACTCTTAATGCTACCTGAATTTTGTATTATAAATTTAAGGATCATGATTATGATATAAAGAATTTCTCAGCATATATGAAATGAACGAATTTGAGCATTGAACGTCTAACCTCATTTTTTAATTATTGTGATATGTAGAGTGGTGCAAAATCACAGATACCTCTCTTGATGCATTTCTATAGTTACGTTGATGTGAGATTATATATAGTTCAGCAGCAGCATGTTGGGAAAATTACTAATAACTCTTCTTTTATATCAAATTGTTGAAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAGGTATTGTTTATCTACTTTATCATGTCGTAAGTATATTATTTGTAAAGATATATATCAAGATAGTTCGATTGCGTACACTTACATTTTGATTATGTTTGGTGAATACTATTCTAATACCTTTTTTTTTCCTAAAGCCTAACAAATAAAGATAATTAAGATGGGAACGTAATTCAAGTACAACATGGTTCCATACGTGACATATTTACACATATAGTGGAACCAAAAGAGCAATTTTTCCTAATATCATTTTCTAAATATCACGTGTGCCCGTGATTCTTTTTTATGGACATGAATTTTTTTTTTAATATGAGTGGAAGTAAGGTTCGATCTTTCTATCTGCTTTGATATCATATTGAATCGTGTGATTGTCTCTTTAAAAAATTAAGCAAGAGCATATTTTATTAATTAATTGTCTTTCTCGACGTTTTTCTCTTTCAACAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGGTAAGATATTAGTGATGTAATTAAATGATTTTAGTTAGATTTACATAAGTTTTTAATAAGTGAAAATTAATAGACATATTCTTGGAGAGGAT</genome_strand>
        <mrna_strand>AAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG.........................................................................ACATATTCTTGGAGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609560" ref_strand="+" ref_description="SGN-E609560 [25571]">
      <seq>cttgtactcttttggagtgaaataaatattggttggttgtgtctgaggagtaggacaaaagaaaatataagtttgccaaacctcgttaattcctggtgttctttttattgttgtctcatctactatttattagctacctttagatataacagttgtgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="56130" stop="56891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56430" g_stop="56591" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E609560" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56430" e_stop="56591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCCGAGGAGTA-GACAAAAGAAAAACAAAATTTTGCCGAACCTCGTTAATTCATAGTGTTCTTTTTGTTGTTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAGTAGTTGTGATTCC</genome_strand>
        <mrna_strand>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCTGAGGAGTAGGACAAAAG-AAAATATAAGTTTGCCAAACCTCGTTAATTCCTGGTGTTCTTTTTATTGTTGTCTCATCTACTATTTATTAGCTACCTTTAGATATAACAGTTGTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206697" ref_strand="+" ref_description="SGN-E206697 [cLEC-31-O17]">
      <seq>ccgctagaagctaaaaaaaaaacctaagtcgtcttccacagtgtagactcgatatcgctcggtttgaagcttcagttttcaccatcagttgaagttttcgttttcaccatcgaaacttgctcggtttgaagcccaagatttcgtcgtcgcttcaatcctctgtgtctatttctttctcttgaaataaagatccaggcagctcttactaccagccttgcggtcgactcttccggttagttataaattcgttataaaaaatggatatgctttctgttaggttagttgtacttgttaatttggcattaagatgttgtgaatgttactgcaaatttagaactaatatcatttaagacaaactgttcagagaactatgattttgtaagaaagaagaaaaatcctaaagattcagatgtgtgggttgagccgtgaactgaagtgacctatgtaagcctctaatttaaaatagtagctaattattttctaaatttatattctaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="67611" stop="69938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67911" g_stop="68099" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68100" i_stop="69325" i_length="1226">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69326" g_stop="69638" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="502" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E206697" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67911" e_stop="68099"/>
          <exon e_start="69326" e_stop="69638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTAGAAGCTAAAAAAAAAACCTAAGTCGTCTTCCACAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAGGTGAACCTGGAAAAACTCACAGTAAACTCTCTGTCTCTTCATCTTCATCTTCCCCACCCTCTTTTCTTTTTTTCTTTGTTTACAAAAAAATCCCTCTTCTAGTAAACTAAAGATCTTGTTTGGTTGTATTTGTGATTTTTAAAATTTAAAGTTGTATTTGGGCATGTAGTTTTCTTGAAAAAAATTGATCTTTTGTTACTGGGGGTGAAATTTTGAAGATAAATTTGATTTTTTTATTAATTCAAATCTATGGACAAACACTAGTTCTGTGGTTATTTCTTTGTTGCATTTAGATATTGATGTTTGTTTGTATTTGCTTATCAATTCTTGGCTTGATAAATTGTCACTTTATATTGAGTTAACAATTTATTGATTTATGCAGAACTTGGTTTTGAGTCTTTTATAGGACAAGTAGTTGTTTATAGCAATTTGCTGGCTCTGTGTCTGATATTATCATTTTGTCAATTATAAGGCTGAAATTTAAGATGTTGAAAAAAAAGGGTGTCATTTTAGCCTTTTGGGATGTCCCTAAATGTTACATCAGTTGTTAGTAGGAGCTATGGTTTCGAAATGTTGGATTATCTCAGTTGTGGAAGTCGGTAAACTTAGAAATTCAGCAGGATTTAGATTATAGCGTGCTGTCTTGTTTTATCTCTTATATGAGAAAATGAGAATGTTCAGTGCTGTAAAATAGCTTAATTTTTGCTGCATTAGCAATTGAAAAGTAGCCTTAGTTTATCATATTGCATTTGATTTGTTATTTAAATCATTATTATCAGCAATCTTCCCTCTTCAACAACATACCGAGTGAGATCCAACAACGGGTATAGCTTGACATTTATTGCTAGGCGCTTTGATGGAGATCTATCTCCATAACAAGTAAAGAATTAATAGCCTAAAAAGAATAAGGTGACAGTTGGATACATAGCTTCATTGTATTAGTAGTATGATTATGAGTAAACCTTGTTTCTATATTTGGTGAATTAATGTTTTGATGAATAGTCATTGCAACAACCAAGAATTTTGAAACTGCATCAGAGCACTGTCCCTGAAATTCTGAACTTTAGCTAATAAAAAATGTGTGTAAAACAATCTCATCCCAAATCCAGCACCAACTCTACTTGTTTTCAACAAATAACAACGAAATTGGGTTTGTTAAATTGAATGAATCAATGAGTTTTAGGGTGAATCATCTTTAACGATGCTATTGTTTGTTTTTTTTGCAGATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCGGTTAGTTATAAATTCGTTATAAAAAATGGATATGCTTTCTGTTAGGTTAGTTGTACTTGTTAATTTGGCATTAAGATGTTGTGAATGTTACTGCAAATTTAGAACTAATATCATTTAAGACAAACTGTTCAGAGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTATGTAAGCCTCTAATTTAAAATAGTAGTTAATTATTTTCTAAATTTATATTCTAATATTA</genome_strand>
        <mrna_strand>CCGCTAGAAGCTAAAAAAAAAACCTAAGTCGTCTTCCACAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCGGTTAGTTATAAATTCGTTATAAAAAATGGATATGCTTTCTGTTAGGTTAGTTGTACTTGTTAATTTGGCATTAAGATGTTGTGAATGTTACTGCAAATTTAGAACTAATATCATTTAAGACAAACTGTTCAGAGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGATGTGTGGGTTGAGCCGTGAACTGAAGTGACCTATGTAAGCCTCTAATTTAAAATAGTAGCTAATTATTTTCTAAATTTATATTCTAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700850" ref_strand="+" ref_description="SGN-E700850 [FA14BD05]">
      <seq>gtcctctcagtgtagactcgatatcgctcggtttgaagcttcagttttcaccatcagttgaagttttcgttttcaccatcgaaacttgctcggtttgaagcccaagatttcgtcgtcgcttcaatcctctgtgtctatttctttctcttgaaataaagatccaggcagctcttactaccagccttgcggtcgactcttccgagaactatgattttgtaagaaagaagaaaaatcctaaagattcagacgtgtgggttgagccgtgaactgaagtgacctatctttggaggatctacgaaaaactcagccagaagaaaatcgaggaaatctgtccaaagttgaatgcggagattttgagcgaagaaatgcagaagagaccacctaaggagctgatgacggtccgtcgtgcttgtgacgattcgtaggtggcagcgtagagaagctgctgaaggaagatgggaaagtctgaccaagtgtggggttacgtagcttgtgacggtccgtcgtggctatgacggttcgtcctgcaggttcgtcatgaagttcagagaagtgatcccaatacccagattccaagagttgaagtgttttgaaacgaagaccctcgacggaccgttgtgcctatgactgtccgtcatacttgccgtcgaggggattgaagagagcagcagaagaaattgctaagtatgggacgatggagacggtccgtcgcgaccacgacggtccgtcgcgaggtccgtcgacccagccgcgttttggcagatttccagcaattagaatccttgtttaataggttttttattttttataaatagttcaaaaaaacctcgtttttgaaggtagactccgtattgttaggctccatattattagacttttggattgtgggattattggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="67641" stop="70760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67941" g_stop="68099" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68100" i_stop="69325" i_length="1226">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69326" g_stop="69368" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="201" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69369" i_stop="69500" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.104" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69501" g_stop="69580" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="281" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69581" i_stop="69670" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69671" g_stop="69712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="323" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69713" i_stop="69893" i_length="181">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69894" g_stop="70460" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="902" r_length="579" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E700850" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67941" e_stop="68099"/>
          <exon e_start="69326" e_stop="69368"/>
          <exon e_start="69501" e_stop="69580"/>
          <exon e_start="69671" e_stop="69712"/>
          <exon e_start="69894" e_stop="70460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCACAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAGGTGAACCTGGAAAAACTCACAGTAAACTCTCTGTCTCTTCATCTTCATCTTCCCCACCCTCTTTTCTTTTTTTCTTTGTTTACAAAAAAATCCCTCTTCTAGTAAACTAAAGATCTTGTTTGGTTGTATTTGTGATTTTTAAAATTTAAAGTTGTATTTGGGCATGTAGTTTTCTTGAAAAAAATTGATCTTTTGTTACTGGGGGTGAAATTTTGAAGATAAATTTGATTTTTTTATTAATTCAAATCTATGGACAAACACTAGTTCTGTGGTTATTTCTTTGTTGCATTTAGATATTGATGTTTGTTTGTATTTGCTTATCAATTCTTGGCTTGATAAATTGTCACTTTATATTGAGTTAACAATTTATTGATTTATGCAGAACTTGGTTTTGAGTCTTTTATAGGACAAGTAGTTGTTTATAGCAATTTGCTGGCTCTGTGTCTGATATTATCATTTTGTCAATTATAAGGCTGAAATTTAAGATGTTGAAAAAAAAGGGTGTCATTTTAGCCTTTTGGGATGTCCCTAAATGTTACATCAGTTGTTAGTAGGAGCTATGGTTTCGAAATGTTGGATTATCTCAGTTGTGGAAGTCGGTAAACTTAGAAATTCAGCAGGATTTAGATTATAGCGTGCTGTCTTGTTTTATCTCTTATATGAGAAAATGAGAATGTTCAGTGCTGTAAAATAGCTTAATTTTTGCTGCATTAGCAATTGAAAAGTAGCCTTAGTTTATCATATTGCATTTGATTTGTTATTTAAATCATTATTATCAGCAATCTTCCCTCTTCAACAACATACCGAGTGAGATCCAACAACGGGTATAGCTTGACATTTATTGCTAGGCGCTTTGATGGAGATCTATCTCCATAACAAGTAAAGAATTAATAGCCTAAAAAGAATAAGGTGACAGTTGGATACATAGCTTCATTGTATTAGTAGTATGATTATGAGTAAACCTTGTTTCTATATTTGGTGAATTAATGTTTTGATGAATAGTCATTGCAACAACCAAGAATTTTGAAACTGCATCAGAGCACTGTCCCTGAAATTCTGAACTTTAGCTAATAAAAAATGTGTGTAAAACAATCTCATCCCAAATCCAGCACCAACTCTACTTGTTTTCAACAAATAACAACGAAATTGGGTTTGTTAAATTGAATGAATCAATGAGTTTTAGGGTGAATCATCTTTAACGATGCTATTGTTTGTTTTTTTTGCAGATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCGGTTAGTTATAAATTCGTTATAAAAAATGGATATGCTTTCTGTTAGGTTAGTTGTACTTGTTAATTTGGCATTAAGATGTTGTGAATGTTACTGCAAATTTAGAACTAATATCATTTAAGACAAACTGTTCAGAGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTATGTAAGCCTCTAATTTAAAATAGTAGTTAATTATTTTCTAAATTTATATTCTAATATTAATACCATTCAATTTATAATCGATATCTTCAAGCTTTGGAGGATCTACGAAAAACTCAGCCAGAAGAAAATCGAGGTATGTCACTTACTCAAGAACAAGATGAAAGAGTGTGGTTGGAATTGATTGGTGGGTCGAGTAGATATGGGTATGTGATATACCGTGGTTTCACGGTATAATTAATATTTTTTCCTTAAGTTTAGTGTGTCCGAAAGTCTTTTTGTGCTAGTTTTGATATGAGTTTCTCTTTGTTTTGCAGGAAATCTGTCCAAAGTTGAATGCGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTAAGGAGCTGATGACGGTCCGTCGTGCTTGTGACGATTCGTAGGTGGCAGCGTAGAGAAGCTGCTGAAGGAAGATGGGAAAGTCTGACCAAGTGTGGGGTTACGTAGCTTGTGACGGTCCGTCGTGGCTATGA------------C-GGTTCGTCATGAAGTTCAGAGAAGTGATCCCAATACCCAGATTCCAAGAGTTGAAGTGTTTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACTGTCCGTCATACTTGCCGTCGAGGAGATTGAAGAGAGCAGCAGAAGAAATTGCTAAGTATGGGACGATGGAGACGGTCCGTCGCGACCACGACGGTCCGTCGCGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAATTAGAATCCTTGTTTAATTAGGTTTTTTATTTTTTATAAATAGTTCAAAAAAACCTCGTTTTTGAGGTTAGACTCCGTATTGTTAGGCTCCATATTATTAGACTTTTGGATTGTTGGATTATTGGAACTT</genome_strand>
        <mrna_strand>GTCCT-CTCAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCG....................................................................................................................................AGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTAT..........................................................................................CTTTGGAGGATCTACGAAAAACTCAGCCAGAAGAAAATCGAG.....................................................................................................................................................................................GAAATCTGTCCAAAGTTGAATGCGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTAAGGAGCTGATGACGGTCCGTCGTGCTTGTGACGATTCGTAGGTGGCAGCGTAGAGAAGCTGCTGAAGGAAGATGGGAAAGTCTGACCAAGTGTGGGGTTACGTAGCTTGTGACGGTCCGTCGTGGCTATGACGGTTCGTCCTGCAGGTTCGTCATGAAGTTCAGAGAAGTGATCCCAATACCCAGATTCCAAGAGTTGAAGTGTTTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACTGTCCGTCATACTTGCCGTCGAGGGGATTGAAGAGAGCAGCAGAAGAAATTGCTAAGTATGGGACGATGGAGACGGTCCGTCGCGACCACGACGGTCCGTCGCGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAATTAGAATCCTTGTTTAA-TAGGTTTTTTATTTTTTATAAATAGTTCAAAAAAACCTCGTTTTTGAAGGTAGACTCCGTATTGTTAGGCTCCATATTATTAGACTTTTGGATTGTGGGATTATTGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716929" ref_strand="+" ref_description="SGN-E716929 [FB18BG08]">
      <seq>gaaaaatcctaaagattcagacgtgtgggttgagccgtgaactgaagtgacctatctttggaggatctacgaaaaactcagccagaagaaaatcgaggaaatctgtccaaagttgaatgcggagattttgagcgaagaaatgcagaagagaccacctaaggagctgatgacggtccgtcgtgcttgtgacgattcgtaggtggcagcgtagagaagctgctgaaggaagatgggaaagtctgaccaagtgtggggttacgtagcttgtgacggtccgtcgtggctatgacggttcgtcatgaagttcagagaagtgatcccaatacccagattccaagagttgaagtgttttgaaacgaagaccctcgacggaccgttgtgcctatgactgtccgtcatacttgccgtcgaggagattgaagagagcagcagaagaaattgctaagtatgggacgatggagacggtccgtcgcgaccacgacggtccgtcgcgaggtccgtcgacccagccgcgttttggcagatttccagcaattagaatccttgtttaattaggttttttattttttataaatagttcaaaaaaacctcgtttttgaggttagactccgtattgttaggctccatattattagacttttggattgttggattattggaacttttggttgttgattagtgttagatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="69226" stop="70790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69526" g_stop="69580" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69581" i_stop="69670" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69671" g_stop="69712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="97" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69713" i_stop="69893" i_length="181">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69894" g_stop="70496" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="700" r_length="603" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E716929" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69526" e_stop="69580"/>
          <exon e_start="69671" e_stop="69712"/>
          <exon e_start="69894" e_stop="70496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTATGTAAGCCTCTAATTTAAAATAGTAGTTAATTATTTTCTAAATTTATATTCTAATATTAATACCATTCAATTTATAATCGATATCTTCAAGCTTTGGAGGATCTACGAAAAACTCAGCCAGAAGAAAATCGAGGTATGTCACTTACTCAAGAACAAGATGAAAGAGTGTGGTTGGAATTGATTGGTGGGTCGAGTAGATATGGGTATGTGATATACCGTGGTTTCACGGTATAATTAATATTTTTTCCTTAAGTTTAGTGTGTCCGAAAGTCTTTTTGTGCTAGTTTTGATATGAGTTTCTCTTTGTTTTGCAGGAAATCTGTCCAAAGTTGAATGCGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTAAGGAGCTGATGACGGTCCGTCGTGCTTGTGACGATTCGTAGGTGGCAGCGTAGAGAAGCTGCTGAAGGAAGATGGGAAAGTCTGACCAAGTGTGGGGTTACGTAGCTTGTGACGGTCCGTCGTGGCTATGACGGTTCGTCATGAAGTTCAGAGAAGTGATCCCAATACCCAGATTCCAAGAGTTGAAGTGTTTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACTGTCCGTCATACTTGCCGTCGAGGAGATTGAAGAGAGCAGCAGAAGAAATTGCTAAGTATGGGACGATGGAGACGGTCCGTCGCGACCACGACGGTCCGTCGCGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAATTAGAATCCTTGTTTAATTAGGTTTTTTATTTTTTATAAATAGTTCAAAAAAACCTCGTTTTTGAGGTTAGACTCCGTATTGTTAGGCTCCATATTATTAGACTTTTGGATTGTTGGATTATTGGAACTTTTGGTTGTTGATTAGTGTTAGATTTTGAGATTCTTA</genome_strand>
        <mrna_strand>GAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTAT..........................................................................................CTTTGGAGGATCTACGAAAAACTCAGCCAGAAGAAAATCGAG.....................................................................................................................................................................................GAAATCTGTCCAAAGTTGAATGCGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTAAGGAGCTGATGACGGTCCGTCGTGCTTGTGACGATTCGTAGGTGGCAGCGTAGAGAAGCTGCTGAAGGAAGATGGGAAAGTCTGACCAAGTGTGGGGTTACGTAGCTTGTGACGGTCCGTCGTGGCTATGACGGTTCGTCATGAAGTTCAGAGAAGTGATCCCAATACCCAGATTCCAAGAGTTGAAGTGTTTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACTGTCCGTCATACTTGCCGTCGAGGAGATTGAAGAGAGCAGCAGAAGAAATTGCTAAGTATGGGACGATGGAGACGGTCCGTCGCGACCACGACGGTCCGTCGCGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAATTAGAATCCTTGTTTAATTAGGTTTTTTATTTTTTATAAATAGTTCAAAAAAACCTCGTTTTTGAGGTTAGACTCCGTATTGTTAGGCTCCATATTATTAGACTTTTGGATTGTTGGATTATTGGAACTTTTGGTTGTTGATTAGTGTTAGATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591338" ref_strand="+" ref_description="SGN-E591338 [45048]">
      <seq>tttctgaatttgatgatggaaaacgcagctgccgcaagcgtcttgctggtcataatgagaggagaaggaagcctcacactggtctgcactctggcagagcaggaaagcactttcaaccattttctggtacaaggtttcaaagtagttcctttgcaacatcatccttcatttgccaggatatacttggcggcagtcttcttcatcaaccaaaacatgatatgcatgactggtataagaatgtaaaggtcgaacattgttctaattacagtcctcaactaaccaggccatttacaaataaacactcacaacctagaccccatttcacttcataccatactgacaaacactgtccagctctccatgatgaaggaataacaactataacaagaagcaaaaataatgaaagtagcaactcatatctgaatgacattggaggctcagattttgtttcccgctctctgttccacagcacctcaatagggagcgaagtcttgaatgttatggactcggcctctccttttcaagggatatcaaactctggctgtgctctctctcttctgtcatctcaatcacaggacacatcaaattattcatctgtagttcctcctagtgctcaccaccttattacacctcgcagtaacacccattacaacatgacacagacatctgaatgtttcccaggagctagcccaaagggttcagcaagtacagtgtccaatatttataatttatctgaagtaatttctgcagagggtcacttggaacagatgctaagaaacaattgtggaagtctttcaaggatcagattacgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="86081" stop="84047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85784" g_stop="85659" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85658" i_stop="85035" i_length="624">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85034" g_stop="84347" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="815" r_length="689" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E591338" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85784" e_stop="85659"/>
          <exon e_start="85034" e_stop="84347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAATTTGATGATGGAAAACGCAGCTGCCGCAAACGTCTTGCTGGTCATAATGAGCGGAGAAGGAAGCCTCACACTGGTCTGCACTCTGGCAGAGCAGGAAAGCACTTCCAACCATATTCTGGTAAAAAAAAAAAATACATCTTATCTCCCTCTCTCTAGGAAGATGCTTGACTATTAGGATTTTACAGGTTTACCTTGTTGCATTCAATGTCTCAGATGATGCATCCAGTCATAATATCCTGATCAATAGCTTTTCTTACCAGCAATTGCTTCCTAGAATTACATGCTTCTTGTAACGGAAAATGTTGAACTATCTCGATAAGGCATGTTCTTGACATCATAATTATATGCATAATAGTTTGTTGTCTTTTTATGTTTTAAAATAGGTAAAAATGTGAACAAGGTATGAGTAATTATCTATAGGGCTAAGGTGCTTCTATGGATTCCTCTGCATCACTTGTTTAATGCGTAAAGGGAATTGTCATTGAGGTTTGGATCTGAAGGAAAATGGGGAACTAGTAGTGCATAGCTGCATAGAGACCAGGATGTGTCCCTTCAGATATCTGTACTATTATGTATCATTTGTATTTCGTTGATTTGTTTCCCACCTCTTACCATTGGTAATACTTTGGTACTCTTGTGTTTCAAAGGAAAATTTGGTCAACCAGGCTTTCAGTGCTTACTTCTGTGACACATTTTGGGGAAATGTATATGCTGTTTTGGTAACACTCTTTAGGTTCTGCAGGTACGAGGTTTCAAGGTAGCTCCTTTGTGACATCCTCCTTCATTTGCCAGGATATACTTGGCGGCAGTCTTCTTCATCAACCAAAACATGATATGCATGACTGGTATAAGAATGTAAAGGTCGAACATTGTTCTGATTACAGTCCTGAACTCACCATGCCTTTTACAAATAAACACTCACAACCTAGACCCCTTTTCACTTCATACCATACTGACAAACACTGTCCAGCTCTCCATGATGAAGGAATAACAACTATAACTAGAAGCAAAAATAATGAAAGTAGCAACTCATATCTGAATGACATTGGAGGCTCAGATTTTGTTTCCCGTTCTCTGTTCCACAGCACCTCAATAGGGAGCGATGTCTTGAATGTTATGGACTCGGACTCTCCTTTTCAAGGGATATCAAACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGGACTCGTCAAATTATTCATCTGTAGTTCCTCCTAGTGCTCACCACCTTATTACACCTCGCAGTTACAACCATTACAACATGACACAGACATCTGAATGTTTCCCAGAAGCTAGCCCAAAGGGTTCAACAAGTACAGTGTCCACTATTTATAATTTATCTGAAGTAATTTCTGCAAAGGGTCAATTGGAACACATACTAAGAAACAATTGTGGAAGTC-TTCAAGGATCAGATTATGTGAA</genome_strand>
        <mrna_strand>TTTCTGAATTTGATGATGGAAAACGCAGCTGCCGCAAGCGTCTTGCTGGTCATAATGAGAGGAGAAGGAAGCCTCACACTGGTCTGCACTCTGGCAGAGCAGGAAAGCACTTTCAACCATTTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGGTTTCAAAGTAGTTCCTTTGCAACATCATCCTTCATTTGCCAGGATATACTTGGCGGCAGTCTTCTTCATCAACCAAAACATGATATGCATGACTGGTATAAGAATGTAAAGGTCGAACATTGTTCTAATTACAGTCCTCAACTAACCAGGCCATTTACAAATAAACACTCACAACCTAGACCCCATTTCACTTCATACCATACTGACAAACACTGTCCAGCTCTCCATGATGAAGGAATAACAACTATAACAAGAAGCAAAAATAATGAAAGTAGCAACTCATATCTGAATGACATTGGAGGCTCAGATTTTGTTTCCCGCTCTCTGTTCCACAGCACCTCAATAGGGAGCGAAGTCTTGAATGTTATGGACTCGGCCTCTCCTTTTCAAGGGATATCAAACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGGACACATCAAATTATTCATCTGTAGTTCCTCCTAGTGCTCACCACCTTATTACACCTCGCAGTAACACCCATTACAACATGACACAGACATCTGAATGTTTCCCAGGAGCTAGCCCAAAGGGTTCAGCAAGTACAGTGTCCAATATTTATAATTTATCTGAAGTAATTTCTGCAGAGGGTCACTTGGAACAGATGCTAAGAAACAATTGTGGAAGTCTTTCAAGGATCAGATTACGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449470" ref_strand="+" ref_description="SGN-E449470 [cSTS-6-J3]">
      <seq>ctgaatttgatgatggaaaacgcagctgccgcaagcgtcttgctggtcataatgagaggagaaggaagcctcacactggtctgcactctggcagagcaggaaagcactttcaaccattttctggtacaaggtttcaaagtagttcctttgcaacatcatccttcatttgccaggatatacttggcggcagtcttcttcatcaaccaaaacatgatatgcatgactggtataagaatgtaaaggtcgaacattgttctaattacagtcctcaactaaccaggccatttacaaataaacactcacaacctagaccccatttcacttcataccatactgacaaacactgtccagctctccatgatgaaggaataacaactataacaagaagcaaaaataatgaaagtagcaactcatatctgaatgacattggaggctcagattttgtttcccgctctctgttccacagcacctcaatagggagcgaagtcttgaatgttatggactcggcctctccttttcaagggatatcaaactctggctgtgctctctctcttctgtcatctcaatcacaggacacatcaaattattcatctgtagttcctcctagtgctcaccaccttattacacctcgcagtaacacccattacaacatgacacagacatctgaatgtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="86081" stop="84183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85781" g_stop="85659" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85658" i_stop="85035" i_length="624">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85034" g_stop="84483" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="675" r_length="552" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E449470" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85781" e_stop="85659"/>
          <exon e_start="85034" e_stop="84483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTGATGATGGAAAACGCAGCTGCCGCAAACGTCTTGCTGGTCATAATGAGCGGAGAAGGAAGCCTCACACTGGTCTGCACTCTGGCAGAGCAGGAAAGCACTTCCAACCATATTCTGGTAAAAAAAAAAAATACATCTTATCTCCCTCTCTCTAGGAAGATGCTTGACTATTAGGATTTTACAGGTTTACCTTGTTGCATTCAATGTCTCAGATGATGCATCCAGTCATAATATCCTGATCAATAGCTTTTCTTACCAGCAATTGCTTCCTAGAATTACATGCTTCTTGTAACGGAAAATGTTGAACTATCTCGATAAGGCATGTTCTTGACATCATAATTATATGCATAATAGTTTGTTGTCTTTTTATGTTTTAAAATAGGTAAAAATGTGAACAAGGTATGAGTAATTATCTATAGGGCTAAGGTGCTTCTATGGATTCCTCTGCATCACTTGTTTAATGCGTAAAGGGAATTGTCATTGAGGTTTGGATCTGAAGGAAAATGGGGAACTAGTAGTGCATAGCTGCATAGAGACCAGGATGTGTCCCTTCAGATATCTGTACTATTATGTATCATTTGTATTTCGTTGATTTGTTTCCCACCTCTTACCATTGGTAATACTTTGGTACTCTTGTGTTTCAAAGGAAAATTTGGTCAACCAGGCTTTCAGTGCTTACTTCTGTGACACATTTTGGGGAAATGTATATGCTGTTTTGGTAACACTCTTTAGGTTCTGCAGGTACGAGGTTTCAAGGTAGCTCCTTTGTGACATCCTCCTTCATTTGCCAGGATATACTTGGCGGCAGTCTTCTTCATCAACCAAAACATGATATGCATGACTGGTATAAGAATGTAAAGGTCGAACATTGTTCTGATTACAGTCCTGAACTCACCATGCCTTTTACAAATAAACACTCACAACCTAGACCCCTTTTCACTTCATACCATACTGACAAACACTGTCCAGCTCTCCATGATGAAGGAATAACAACTATAACTAGAAGCAAAAATAATGAAAGTAGCAACTCATATCTGAATGACATTGGAGGCTCAGATTTTGTTTCCCGTTCTCTGTTCCACAGCACCTCAATAGGGAGCGATGTCTTGAATGTTATGGACTCGGACTCTCCTTTTCAAGGGATATCAAACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGGACTCGTCAAATTATTCATCTGTAGTTCCTCCTAGTGCTCACCACCTTATTACACCTCGCAGTTACAACCATTACAACATGACACAGACATCTGAATGTTTCC</genome_strand>
        <mrna_strand>CTGAATTTGATGATGGAAAACGCAGCTGCCGCAAGCGTCTTGCTGGTCATAATGAGAGGAGAAGGAAGCCTCACACTGGTCTGCACTCTGGCAGAGCAGGAAAGCACTTTCAACCATTTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGGTTTCAAAGTAGTTCCTTTGCAACATCATCCTTCATTTGCCAGGATATACTTGGCGGCAGTCTTCTTCATCAACCAAAACATGATATGCATGACTGGTATAAGAATGTAAAGGTCGAACATTGTTCTAATTACAGTCCTCAACTAACCAGGCCATTTACAAATAAACACTCACAACCTAGACCCCATTTCACTTCATACCATACTGACAAACACTGTCCAGCTCTCCATGATGAAGGAATAACAACTATAACAAGAAGCAAAAATAATGAAAGTAGCAACTCATATCTGAATGACATTGGAGGCTCAGATTTTGTTTCCCGCTCTCTGTTCCACAGCACCTCAATAGGGAGCGAAGTCTTGAATGTTATGGACTCGGCCTCTCCTTTTCAAGGGATATCAAACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGGACACATCAAATTATTCATCTGTAGTTCCTCCTAGTGCTCACCACCTTATTACACCTCGCAGTAACACCCATTACAACATGACACAGACATCTGAATGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317610" ref_strand="+" ref_description="SGN-E317610 [cTOB-8-A20]">
      <seq>aaagattctgggggtattgttcctgattgtttcattgaataaattagggaagcaataacttaaatggggagcaaccataacaatgataacttggagcacaaactgcaagccgggaaattgttccgtcatgttaattctctcatagtcgctcatcttcgcgataataatctcaatcaagctgcaagtgctgtagcttcatctacaatgacaccaatgaatgttgaagctcctgccaacaagctactggaattggttgcaaagtggacaaagatgacacactgagaggagtttctacagctataccttttgatccaattgtaactgctggatatggctcaatcccggcccctcgggctgcatatgttgatttcagtagcatgaacaatacaaaagggccgtcaaaaaatatcccaaagcatgagtcacgacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="123547" stop="129001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123847" g_stop="124023" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124024" i_stop="127477" i_length="3454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127478" g_stop="127561" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="261" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127562" i_stop="127696" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.015" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127697" g_stop="127808" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="373" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127809" i_stop="128640" i_length="832">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128641" g_stop="128701" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="434" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E317610" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123847" e_stop="124023"/>
          <exon e_start="127478" e_stop="127561"/>
          <exon e_start="127697" e_stop="127808"/>
          <exon e_start="128641" e_stop="128701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCTGGGGGTATTGTTCCTGATTGTTTCATTGAATAAATTAGGGAAGCAATAACTTAAATGGGGAGCAACCATAACAATGATAACTTGGAGCACAAACTGCAAGCCGGGAAATTGTTCCGTCATGTTAATTCTCTCATAGTCGCTCATCTTCGCGATAATAATCTCAATCAGGTACTGTTTCCTCAATTATTTGGTTTTATATACACATTCAACCTTTTGAAACTGCTTACCTTCTTTGGGTTCCTTGAGAACGTTGGGAGAAGAGAAATCTTTGGTGACTGTAAATATGTAACATTATAGTTGTTGGAAAAATTACAACTTTATTGAAACAAATCTTATGTTGTGGCGTTCGAGAGCGATTTCAGTCCTACTAGGATGCACATAGTTGTTAGCTGTTGCTCTCCGTGGTTCCACAGCTCAGAAATAACACAAAGAGGAGAAAATTTGGAGAAGAAAAGAGAATTTTTTTAGGGTAGGAAAATGGTCAAAATTCGTCTGCTTTATATAGGTTAATTCTGGAGGTGTTATAAAGGGGGTTTAGTGAGCTGTAACAAAATTAAGTTGATTGTCACAATTAACTTGGTAGCTACTAATTAAAATGGCTACTACAATAGTGATCGACTGTTCTTACAAAATTTATTTAGTAATATATCAGTATATGTTCTTGTAAACATGTATTTGGATACTTTATATGTAAATTAAAAAAAAAACTAAAAATATTTTCTTAAAATCAGATTTGGGATAGGTCTCAGATATATACAGCATGCAGGGGAACATTGATCTGTTTTGTCTTCAAGCCACTTCTCATGTGCGCAAGACCACTCCTTTTTACTTGCTCGTTACAAGCCCAATAAAGGGCGATTACTCCTTTTTACTAGTTCGTTACAAGCGCAATAAAGGGCGATTAAAATAAGGAGAAAAGCAGTGTTTTTCTAATTAATGTGACTTTTGTTTCACATAAGACAAGAAATAGTTTGGGGAAAATGAACCTACAAGCATTCTTTATTCTTTGCATTATTTAAAAAGAAATAATGCCAAAGAAACGAAATGATAAAGAAATGATTCCAACAATCACTCACTAATGCTAAGGTAAAAAATGAGAACGAAGTTTGGGAAAAGGTTATCTAATGCTATTAAAGACAAAGGTAAAACTCGAAGCAAGGAGGTCAAGCTTCTATCCAAGCTCACCTTGCTGAGGGTAATGAAAGGAATTATTTCATCAACCCCCACTAATGCAGAAGGTCAAAAATAAGATCAAATTTTGGGGAAAGGCTGCCTAGTGCTATCAAAGATAAGGGAAAACCTTGAAGCAGGGAGGACAAGTTTCTATCCAAGCTCACCTTGTTGAGGGTGATGAAGAGACTGTTACCATTGTTGTCGAGGCAAACTCTGTAGCTAACAAGATTGATTGGGTATGGACTTTGGGGCCTTAAGACATGTTTGCATCAACTAGGAGTTGTTTCATTATTTTGAGGAGTCTACCGATGATGAGTGTGTCTACATGGGTAACTTCATCATTTCTAGAGTTATGGGTACATGAAAATTTTGCTTAATTTAACTTCTGGAAAAACGTTGGATTCTGTTTTTCCCTCCCTTTGTAAAACTTAGTTTCACTAGCACTTCTCCACAAAGCATGTCTTAAACTTGTTTTTGAAGCTGATAAAATAATTAATTTCTCACAAAAGGATTTGTTGGGAAGGGGTACCTCAATAAAGGTTTTGTTTGTGCGGAGTATGGTTCAAGAAGTTGTCAATAATGCAAGTAATTCTAGATCTGCTTATGTTGTTGAGTCTGCTAATTTTTGTCATGGTAGACTAGGTTGCTAATATTACTTTATTAAAGACTTAGAAAAATGAAATTAATCCCTGGGATAAAGTGTTAGGTGATTGAGTGACTCAGTTCAATTCAGACACTGGGGATGACCAAAATTGCATGCTTTATAGAAAATGGGAATTTGAATTGCAACTTACTGTCTTTCAGAAGAAAGTGTCTTTAATTGTTCCTCAAATACTACAATTCTCGTTGCCTCGTTGCAATTGTAATTAGTTATAGACTTATTGGAATAAAGAGCTTTTACATATATAACCTATGAAGGTTGCATAGCTTTGAAAAGTGCTTCTCTTATTTGTCCTCTATTCATGGTCTGTTTTCATACCTCCGTGATGCTCAATTGGTCATCATGACATGCTTATCATACCTCTTAGACCATAAGAGAAATTATTCTAACAGACTTGCCATGTCTTGTAATACTAGATACAGGAGCCTGTGCTAGCATAGGCCCAAACTATATTACTTTTGGTTACAATTTATGTCACATATAAAATTTGGAGAGTCAATCAAGTTTTTAAATATTTTAATTTGTTAATTATTATGATCTACAATACTTTTACGTAATTTTCAAATAATATATGTTACTTCCTTTGTCCCAATTTATGTGACACTAATAGAATTTAAGTGTCAACCAATTCTTTATATGTCTTCTAAATTTTTAAGTTGTATATTATCGTGATTCGATTTATAGTACTTTTTATGTCATTTTTATATTTTACTTCTTCTGTCCCAATTTATGTGGCACTGATAGAATTTCAAAGGTTTTTATATCTCTTTTGAATATTTTAAGTTGTCAATCATTGTGAATTATAGTACATTTTTCGTAATTTTCAAATAATATATGTTACTCTCTATCTCAATTTATGTGGCACTGATAGAAATTCGAGAATCATTTAATCTTTTTATGTCTTTTATTAAGTTATTTATTATTTTGATTTATAATATTTTTTTTCTGGCATTTCAAATAATACATGTTACTTCCTCTGTGTCCCAATTTGTTGGTACTGATAGAATTTTAAGAGTCAATCAAATTTTTTATGTCTTTTAAATATTTTAAGTTGCTCAATTATGTAATTTATAGTAATATTTATCTAACTTTCAAATATTTAACAAATTAAAAAGAAAAATCAGACGGACAAATTAAACAGAGTAAGAAATTGTTTTGCCCGAAATGACCAAAGTAGCCCTTGGGCAGCAAGCTTCCAAGGTGGTTCTATATATAGAGAAACATATTGGGGATTGAACAAATGATCATGGTTGCTATCATGGCATTTGGAATTTATCGCTACGTTGCAATCTAAGGTTTTTGATATTCAAACCTCACTTGGTGTTTCTTTTTGCGGTTTCAGCTAATAGGAGTCCCATGACTATCTTAGCTTCCTTGCTACAGAATTTCACAAAATTCTAGAGTTCACACTGCAATTATCCCCTAGAACAAGGAAATATCTACAAGAACTCCACAAAATTTGACTTTAAACTTTTCATTGCGGAGTCCAGCATGTGTATTCTTTGTTTTCCTTGGTCATTGTGCTGCATGTTTCTTGCTGTCTCTGATACATGATGCGGATACCTTCCATAGCATATCTGTAATAACATATGGGCTGCAAGTGAGGTCTCCTAACACAGTCATCTTTTCCTGGGTTTAACTGCTTGACCTAGCACTATGATTGGGTTCAAAAAAACAAAGTTGAGCACATCAGCTTGTGTGTCTTATACATGTTTTGAATATAACTGGTATGTAGCTAAGCTAAGTTATTTAGAGGTCTTGATGAATTCTGCTATGCGTGTATGACAGGCTGCAAGTGCTGTAGCTTCATCTACAATGACACCAATGAATGTTGAAGCTCCTCCCAACAAGCTACTGGAATTGGTTGCAAAGGTTTGTATCAGTTGGTAGCGTTTGACTTTGTTATGCTTTCACTGATTTTCTGCTGCTCAACATGGGGTAAGACTGTAAGAGAATAGATGTATAAAAACTTCTTTATCAGTCTAAGCCGTTAACAGGGTCTTGCAGTGGACAAAGATGACACACTGAGAGGAGTTTCTACAGCTATACCTTTTGATCCAATTGTAACTGCTGGATATGGCTCAATCCCGGCCCCTCGGGCTGCATATGTTGATTTCAGGCAATTTTTCTCCCATTAAACTATTTTCTTATTAACCTAAAGGGTTTAAGTTCTGTTTTATAAGTTTGAGTGCTTGAAGTACAATTAATGCGTTATCGGTTGACCAAGAGTTTAAAATCCTTATCCCATGCTGATGTATGCAGTTGACAAGTTCTACTGTGAGTGAAAAGGAGGAAGTTATCTGGTGATTGTAGGAAATTTTTGGATACTTGAGTTCTAATCTTCTGTAATCAAGAGTAATAACTAATAGGGAATGATTCCCATGTATGGAAAAACTAGAGTGTCCAATTGACTATCTTTTTCCAAAAGTATCCGATTGATCATCTTTTTTCCTTTTTTCATTATTTACATCTTTCTAACTGATTAGCTGCTGCACCTTTTGAACCAATCATAATTTTTATTCTGTATATTATTAAGTTCTGTACTGAATATATGCATGAGGGTGAAACTTTATTGTGTAACAGCTTTCATATTGAGCTAGGTCATGTCTATCATACTCTTCCTATGTAGACACTGTAACTTTGATCCTTTATAAGATCCTTTTGATCCGTGTATCAAGAGATCCAGCAGTGGCTTATACACTATAGCGAGCCATCAAAATGCATCTCATAGTCATTTGACCTAAGAATAATGTCTCAAGATTACCAGAGTGGGTTCACTTTCAGATTTCAGGATTCACCATAATTTAATTTATCTGTCTGGACCATGTAAGACCATTTCCTGGCTTGCTGCATCTGTGTGATAAATGTTTCTTCTTTCTTGTAACAAATTTATAAATGATGTTAAGCTTGTCATTTGTTGGAGTTCTGATAATCAATTTGTTTTGCAACAGTAGCATGAACAATACAAAAGGGCCGTCAAAAAATATCCCAAAGCATGAGTCACGACATATT</genome_strand>
        <mrna_strand>AAAGATTCTGGGGGTATTGTTCCTGATTGTTTCATTGAATAAATTAGGGAAGCAATAACTTAAATGGGGAGCAACCATAACAATGATAACTTGGAGCACAAACTGCAAGCCGGGAAATTGTTCCGTCATGTTAATTCTCTCATAGTCGCTCATCTTCGCGATAATAATCTCAATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGTGCTGTAGCTTCATCTACAATGACACCAATGAATGTTGAAGCTCCTGCCAACAAGCTACTGGAATTGGTTGCAAAG.......................................................................................................................................TGGACAAAGATGACACACTGAGAGGAGTTTCTACAGCTATACCTTTTGATCCAATTGTAACTGCTGGATATGGCTCAATCCCGGCCCCTCGGGCTGCATATGTTGATTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATGAACAATACAAAAGGGCCGTCAAAAAATATCCCAAAGCATGAGTCACGACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575122" ref_strand="+" ref_description="SGN-E575122 [34696]">
      <seq>atttctgagcacaagaatgttgcaaggtgtgccagataatagccctgnatggaagatttcttgctactggaagtgcagacacatcaattaaattgtttgagattgcaaaagttaagcaaatgatgcagccagaagcaagggattgcccagtgaggcctgttatacggactttttatgatcatcaacaagttctttgatttttccaaaacagtagcaaagagagcatttagagtgattcaggatacacataatgtaaggacggtgtcatttcatccttccggggactatcttctggcaggaactgatcattcaattccccacctatatgacattaacactttcaaatgctacctgccaccaaatttccaagatatgggtgtcaatggtgctattaatcaggttaggtattcatctaccggtggaatgtatgtaactgcatccaaagatggtgcaattcggttatgggatggggtaacagctagctgtgtgcgatctatagatggtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="128510" stop="138841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128699" g_stop="128713" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128714" i_stop="128811" i_length="98">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.300" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128812" g_stop="128895" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="101" r_length="86" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128896" i_stop="128968" i_length="73">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128969" g_stop="129055" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="188" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129056" i_stop="129645" i_length="590">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129646" g_stop="129697" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="240" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129698" i_stop="129800" i_length="103">
            <donor d_prob="0.792" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129801" g_stop="129858" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="298" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129859" i_stop="138264" i_length="8406">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="138265" g_stop="138365" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="399" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="138366" i_stop="138431" i_length="66">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="138432" g_stop="138541" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="509" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E575122" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128699" e_stop="128713"/>
          <exon e_start="128812" e_stop="128895"/>
          <exon e_start="128969" e_stop="129055"/>
          <exon e_start="129646" e_stop="129697"/>
          <exon e_start="129801" e_stop="129858"/>
          <exon e_start="138265" e_stop="138365"/>
          <exon e_start="138432" e_stop="138541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCGAGCACAAGGTTGTATCTTAAACAGAACTGTAGGTTGTATGAGCTCTTGTCTTTGTTTCAATTGCCAATTCCCAGCAGTAAGTTTTAACACAAGAATTTTCTTTTAGAATGTTGCAAGGTGTGCCAGAT-TTAGCCCTG-ATGGAAGATTCCTTGCTACTGGAAGTGCAGACACATCAATTAAATTGTTTGAGGTATTGTATCATTTCTTTAGAACTCTGAACTTTCATTCTTGTACTTCTAATTCAAAAGCGTTAACTTGTGCAGATTGTAAAAGTTAAGCAAATGAAGCAGCCAGAAGCAAGGGATGGCCCAGTGAGGCCTGTTGTACGAACTTTTTATGATCATCAACAAGTAAGATCTTGATTGTGTGATACTTAAATTTCTTGAGTCAGATGTCCCTGTATACAACTTTTTAGGTCTGTTAATTTGAGCATTGGTTCAAAAGATCTCTCATTAGCCACTATATAGGTGAGACGTTTACTGGATTATTCTACCAAATTAAAGTTCACTGGACTTGTTTGTATTATTTTTTGCCTGTGGATGCTCCTCTCATTAAAATGGTAAAAAAATATAAAAAGTGGAGCATCCCTTTTATCATTTTTTTAAAGGGAGCATATAGCTGAGTAAGTTGAACATCATATTATCTCTGGCGATTTGATGGTGTGCTTCCCCTTAATTATTGATAGCACCCCCACACACTCTATTCCTGTGAATCTAAGTTTCTGATGTGTGATTATGTCAGGATTTTCCCTGTTTCTTACCCAAAACTTGTACATAACTGCAGCCTATAAATGACTTGGATTTTCATCCACAAAATACAGTACTCATATCTGGATCAAAAGATCGCACCATCAAGTAGGATTTATTACTAACTGTGAAGTTTCCTATTATGTTTGTCACTGGAATATTACCTAACTACTTTTTCCTTTGGCTTCTTTCAGGTTCTTTGATTTTTCCAAAGCGGTAGCAAAGAGAGCATTTAGAGTGATTCAGGTCACTCAAATGTTATTCAATTTTGAAACCAAACATTAAGCATGAATTTAGCTTAGAAAATATACTAACTGTTCTACTTGATTTGGATTAAATGTTTCAACAGGATACACATAATGTAAGGTCGGTGTCATTTCATCCTTCAGGGGACTATCTTCTGGCAGGCAAGTAAATTTCTTTCAAGTTATATACTGTACATTGGGCTACTATTTACTAGTTAGGTGAACTTAAAACTTATTTGATGATGCTATTTTAGAGGTGAATTAAAACCTGATTTAATGATGATATGTTGGACAACTTTTTATCCCTGAAGTTTTCTATGATCTTTTGCCCAATTTCTAGAGAAATGGGGAAGTCATACTTTACAGGTTTCTACCAGAACAAAAACGAGCAATCTATGCCTATGCTATGAAGTGTAAAAATCTGTTTGTTCATCTTTTTGGTATTGGTGATCAAATCTCGTAATGCAATATATTCTTATGTGCTAATCCATTCTCTGCAGTTACTTCTAACTAGATTTTTCGGTGTCTTTCTTGTTAAGTTGTTTTTTTTTTTTGAAATAGGTAACTTTGATTTTTTGTTAAGTAATTACTTTTTGCATTATTCACCGCTGGACAAAGAAATGTAACCTTGTATTATTCACCAAACTCAGCACTAAGGAAATGCTGTGAATAACAGGAGTAAAGCCATCCCAAAAACAAATGTACAGAGCCTATGAAGTCCTAAATATTATTTACATCATCCACAAAATGAAAATTGAACTACAGTTAACAATGTTAAATTAGAAATGCTCTCTGGAACAGTTCTCTAGGCAGTTCTCTCTCCTCCCTCCTCCCTCCTACGTGGGAAAGCCCTCTCTCCTCCGGCACCCAATACCTCTGGTAATTACCTCATGTGATTATTCTTCTTTTCTTTCTACTCTCTTGCTTAGGCAAGCCATGGGGGGAAATAGGATTTGTTTTAATGCTAGTTTCAAGACTTTTGGTATTACCAGAAGGAATGATGAAGGCTCTGTTTGGTACGAGTGGGTGGAAAGAAGTCGAAGAATGATGCGAAGAACTACCGTGAGCAGTAAGGTAATGGAATGGATCTGTTTCCTGCTAAGAGAAGCTTCCACTGGTCAGAAGAAAGTCACAGGGAGATGGAGATATACTGAAAGAAAAGAGGAAACTTCTGCACTACGAAACATAATGAATATGGGAGATATATGAGCATTGTAGCCATTAATGTGGGGGGTAGATCTGTTATCATTATTCCAGAACCAGTCTTGAATGCTGGATGGTACAATTTAGCATTTAAGATAGAAAAACTTCATTAACTGCCCCAAATGGTCAATATCGACTAGTTTACCAAGACTTTTGAACTCCGGATACCCCTACTCAAAGGCTGTAATGGACAGCAAATGGCTATAAAAAAACCACAAGGAGACAAGCTCAGCAGAAAAGCAAGAGGATGGGCTTTTGGATAGGTGTCTTGTAGGGTATCTGGAGAAGGCCGCAAAGAGAAACCTTCTTTGTCTGAAATCAAAAGGTGGTCATCTTCTGAATGGAAGGCCTTCAGTGTCAATATTCACGAGCTATACGAAAACATGTTCCTTTTTGAATTTCCCAATAAATTCATTGCGGAACAAACTCTTCAAGGTTAGTGGAAATGGAGAAACCTGAGTTTCAACCTAGAATGGTGGAAGTTAAAAAAACTTGGAATATAAATTATAGGGATCCCCCCTACATCTATGGTCACAAGTATTTCAAGAAATAGAGCAACTATGTGGTGGTTGGGTTTTGTTGCAAACAGTGGTAGAAATATACCGAAAGAGGTTTCGATTTCGCGTGGTCGGATACCATTTTCTGATATGAGTTGAAGGCAAAGTAAGATATGAAATCTTGCCGGAAAAAGTTTTGAATCTCACCAGAGAAGAAGATAACAATTTGAAATCAGGGTATGTTATGGACCAGGAGATAATAAGGAGTAACATATGTACTGTAGTACAAAAATCCCCTTTTACCAGGGATCCTAGTACATATACCCATGTGGGGACTGGAAAGTTGACAGCTGTGGTGGTACCCACTGAGTCATATGAGAGCCATATGACCTCTTTAACGAAAGAATCTATTATGGGCCTTAGGTCTTAGGCCAGAACAACTAAAAGAAGAGTATAATGGGCTAGATCCAGCAAGCCTATTTATTTAATAGCATATCCAATTCCACCCAGCCCAATCCAGTAGAAGATTGGACTCTTCAAGATAAAGAAACACGGTTCTTCTCAAAGACATTGCAGGGAGCACAACTGAATACTGAGAAAGAGAGAACAACAACAGATAAAGTGGTGTTTTGGGTGATGTGGTTGTGCTAAATATGGAAGAATCAGAGGCACAAGTTCCAATTGGGGAGGAAAAAGAGGTATGCTATTGAAGACCAGAAAACTTTGACCTCTGTTGAAGAATGGGAAGTCGAAGAAGCAGAGCCACTATACACGCAACAACTGTTAATCGCAGAAAAAAGAGAGAAGTTTCTGCTTGGGTGAAACAAAATTTGATCAGACTGGGAAAATTGTTTGGGGCTGATTTCCCAGGTCATGAAGAGGAAGCTAAGGAACTCTTACTACAGGTGGACAGACAAGCCAGACACCAAGAAGCTGTAGCTGTATGCAAGAAGACGAGGTTCAAGGGCTCTAATGAATTGAAAAGTTTTGTAGCTTTTGATGTGAAGTTCAAAAGTGTGTGTGGTGGGGTGTGTGTGTGTGTGGGGGGGGGTTAGAGATAAGGGGAGAAACTTCGTAACTATTTCTTGATGCAATTTAAACTTGTCTCATGGAATGTAAGGGGTTTAAACACTAGGGACAAACGGAGGGTTGTCAAGAGCATTATGGGGGATTGGAAAGCTGACGTTATTTGTGTTCAAGAAACCAAACTAGAGAGGGATCTTATGGGGCTAGTAAGGCAGATTAAGGGTGGTAGATGGATCAAAATGGCATGTTTGGAAGCTAGTGGGACAAGAGGAGGGATAATGATGCTTTGGGATAGTAGAATATGGAAAGGGGAAGTTTTATAGATCGGGACATATACCCTTTATCTGGAAGTTTGTGAGTTTGAATCACAGGTGCAGGACTTCTCATGCCATATAACAGGAGTATATGCTCCAAATTGCTATGTGGAAAGACTAGTATGGAAGAAATTGTCTCTATCAGAGGTTTAATAGAAGGTCCATGGCAGTTTGTGGTGATTTTAACGAGGCTAGATATGTATCAGAAAAGAGGAGAGGAGATGTATCATGAGAACAATAGGGTTGCGGGAGTTCTCTGATTTGATCGAGGATCTAAACCTAGTTGATCTTCAATTGGAAAATGCAAAGTTCACCTGGTTCAAAGGGGATAACCACCTGATAGCTTCAAGAATCGACAGGGTCTTGGTATCTCACGAATGGGATGATGCTTTTAGCAACTTGAAACAATGCACCATACAGAGAATAGTGTTCGACCACTCTCCAACACACTCCAAGGTGGTTCCCAGAAAATAGCAAGAGCTATTTTATGTTTGAGAACAGGTGGTTAGGGACTGAAGGTTTCATTGACAAATGACAGAGTAAGGATATGGTGGAGCTCTTTTTGATTATATTGGGAGGCCTGATTACATCCTTGCATCCAAATTAATAGCCTTGAAACACAAATTTAAGGAGTGGAGCAGAAGTGAGCGAGGGAATCTTGGCCAATAGAGGAGATCTTTACTTGAAAAGTTGGCTGATATGGAAAAGATTGCTACTGATAAAGAAGTAACTGAGGATGAGGCAACAGAAAAGACTAAGTTTAGTTTTGAACTTGGAGGATTTGATAAAAAATGAGAAGATCTACTGGAGGCAAAGATCAGATCAATTTGGTTAAAGGAAGGGGATAAGAACACCAAGTTCTTCCATAAGATAGCTAATGCACACAAGAGGTACCATAACGTATAGTAACTGCTAGTCCAGGGGAACATTGTCCAAGATCCAAAAATAATCCAAGGGGAAATAGTGGAGTTCTATTAGAAGCTTTATACAGAGGAGTTGCAGTGGGGACATGCCAACACATATTTTTTTCTCCCATTTGAACTTATTTCCATAATCTTTGTTGCTTTTATAGGTGCAATTGCTGTAGCTCGTCAATAAAATATTTCTATTAAAACTTGGAATTCAAATAAAATTTTGTGCTGTCTTATCACATTCACTTTTTTTCAATTCTATTTGAATTCTATCTGGATAAATAGAAAGACTCTAGGTCAATCTAGTACCAATATATTTATTTGTTCCAATTTTTTGAATTGCCCAAAGTTGACAGGGGAGGAAAAGGAGGATCTTGATATAAGCTTTGACAAGGAAGTTCTAAGGTGTTTAAAGCAGTGTGCAATTGATAAAGCACCAATGTTGGGAGGTGATGAAAGGTGACATAATGGAGAATTTTCAAATCTTCCATGAACAAGGGAGGTTGGAAAGAAGTCTGATTCTACATTCATAGCCCTAATCCCAAAAGAAGAAATGTGAAAAGAATTGAGGGACTTCAGACCTATTAGCTTTTTTAGGTAGTATGTATAAGATCTTTTCAGAAGTGCTTACCGAAAGGCTGAAAAAAGTGATGTACAAGCTTGTTGTATCACAACAATTAGCTTTTATTAAAGGGAGACAGATAATGGATGCAGTCCTCATAGCTAATGAAGTTGTAGATTCCAGGTTAGTCTAAAAAAATGACCAAGAAATGTATGCAAATTAGACATTGGGAAAGCATATGACCATGTCAATTGGGACTTTCTTATGGGTATGCTAGAGAAGAATTCTGCGTACCTTCAGTGAACTTCTCAGTATTGGTAAATGGCTCTCCAACAGGATATTGTAGGTCACATAGAGGCTCAGGGTGATCCCTTATCACCCTTCCTTTTCATACTAGTCATGGAGGGACTCAACAATATGATCAAGAATGCATGCAATGAAGGGTGGCTGAGAGGTTTTGAAGTTGCTAGAGCTGGAAGGGAAAGTCTAGAGATCACTCATTTACAATATGCAGATGACGCCTTGATCTTTTGTGATGCTGATAAAGACCACCTTAAAATATTAAGACTGACTCTAGTTACTTTTGAAGTTATATCTGGGCTACATGTCAACTAGAGGAAAAGCTTCTTGTATCAGTAAATGAAGAGTACCAAACATGGAAATTTTGAAGTCAATATTGGGATGTGAAGTAGCTGTCCTCCCAACCACATATTTGGGTATGCCTTTGGGGGCAAAATCCAAGTCTATGGAAATCTAGGATGGGGTGATTAAAAAGTGTGAGAAGAGGCTAGCAAGGTGGAAGTCTTAGTACCTTTCACTAGGGGGGAGACTAACTTTGATTAATTATGAGCTTGGTGCACTTCCAACATAAATGATGTCATTGTTTCCTGTCCCACTGGGAATCATCAATAGGTTGGATAGCATCATGAGAAAAATTTTATGGCAAGGCAACAAGGAAAGGAGAGGGTATCACTTAGTCAAATGGAAAACTGTGATCACTGAAAAGAGAGTTGAGGGTCTGGGGATCAAGAACATGAAGAATCAGAGCAAAGCTTTTAGGATTAAGTGGCTTTGGGAGTACTCAAATGATAATCAGAATTTATGGGGCTTAATCATAAAGGCAAAATATGAAGAGAGTGATAGTTGGATGACAAAGGAGGTTACCACCCCTTATGGTGTTAGCTTATGGAAATCCATTTGAGAACTCTGGTATGAATACAAACCTAATACCAAGATCAAAGTGGTAGATGGAATAAAAACTAGATTCTGGAAGGATGATTGGCATGCTGAAGGAAATATGGAGACTCTCTTCCCTGACATCCACAATTTAGCTCTTCAGCAACAAAGTACTATAGCTGACTTATGGACTCCTCAAGTGTGGAATTTTGTATTTAGAAGACACCTCAATGGGAAATTCCAAAAGTAACATAATTTTTTAGAAGCATTGATCAGTTTAGTGGTCTGGAAATAGGGTGGGACAGATCGCAGTGGTTGGGAAACAGTAAAGGGATTTTTAAACTAGGTGCAACATACGAGAAGTTGAACCATGAACCATCAAAATTTGCAGTTACTCAAGTGGCCCTGGAGACATATGGAAAGCCAAGATCCCCTACAAGGTGTCTTGCTTTGTGTGGTTATTGGCTAAAGAAGCAGTATAGACACGAGAGAATTTAATGAAGAGGAGAATTACACTTTGCTCTAGATGTTTTTTCTGTGGGAGAACTGCAGAAGTTCATCCAATATGAAGTCACCGTCCAGCTGTTGCTGAGACTTAAAAGCATCTCTTGGTCCATGCCTAGGAGAATTTCAGAAGCTATACAGGGACACGAGCAAAAAAACAGAACTAACTAGAGAATTGTCCCTGCCACTATTTGGTGGACAATATGGAAAGAGAAGAACCTTAGTGCTTTTGAGAATAGGGAGAATAGTATGCAACAAGTTAAACTGAATTGCATTTTGACTCGGCGTTTTGGTGTAATCAAATTTACTCTAATGATACCATCTCTATTATTGATGTCTTAGACTCATTATAGGGATAAGTCAATATAATTAGAGTTCTTGTGTAAATACGGGTTTCAATACAACCTATGTACTGTTGTACAGAAATAGAAACAACTACCATTTTCAAAAAAAAAATGAAAATGAAAATTAAACTAAATGTTAAGGCAGTTAAGGAAAAAAAAAGCCTTCTATCTGATATGATACCTGGTTTGATTGAATCAACATGTGATATTGACTTATAAATCTTAAAAGAGAAATGAAGCTCCGGAGGGCAGCTCGTTGATGATTGGTCTCAACTTCAACTAAGAGGAAATATAGATCCAAAGGTGTTGTAAGTTGTAACTACTTAATATGAAGTACAAAAACTACTATAACAACATACAATATAGTTCCACGACTAAGGTATGGGGAGAGTAGACTGTACGCAAACCTTATCTCTACCCGAGTTTTCGTGAGACCCTAGACTCAGAGAAAGCATAAACACAACATTTATGAATGCATAAAAAATAGCACTATAGTAAGATAATAGAGGCATGCAATACAAGTAGTAATAGAAGAATAATAACAATACAGAAACAGTAAAATAATAAATTTATCAAAAATAGTACTAATGCTACTAGCCAGAAAGACCATATGCAAAACTATTTATTGTTATTCTTCTGCCCGAATCCTCGACCTCCATACCCCTCCCATCAAGGGTCATGTTTTTGGTAAGCTAAAGTCTTGCCATGTCATTACCTCTCCCCAAACACTTCTTCGGCTACCCTTAGTCCTTACCTTCCCTCCTGCCTTCCAGTGTCAACATCCCACACCTTCTCACTGGGCATTTGTACATCTCCTCTTGACATGTCTGAACCTTGTCAGCCTAGCGTACCATATCTTGTCCACCACAGAGGCAACTTCAACCTTGGCCCGCATATCATAATTTATACCCTATAACATCCCTAGTCTTAGAACCCACCCATCTGGTCTCCTGAGCACAAGTTGTGATCTTCCTGTTCTTGAGAATCTTCACTAACTCTATACACTTCCCGTCAGAGTTCCTATGTTCCAAGACACTAACACTACCACTAATATACAAAAAAGAGAAGTGTCTTAAGACAATGGAATCTGCACGCAACACTACGCTATGCTAATGCAATATATATCTCTACAAGAGCGGAAGATAAGGGCTGAAAAGTGCACCCAAAGGTACCAACTCCTGGCGGATAGAACGTGGTATAGGCTGGAGATATCTACGCTCTGCTGCTGGTCTAGACTGAAATGATTTGCTGATGCTCACGCTCCGACACATACTGCTGCTGCCCCTGCAACTGGAGATTACTGTTCGCTGCTCAGTGTGCACCTGTACTACCAGACCACGAGAAACAAGGAAAAAAAAAGAAAAAGAAGAGGAAAGAAGCAACTATAAAGGAAAAGAACAAGAGGACAGAGAAGGTGGAGCGATGACTGTGGCTGATACTAAAACCACAGCAGCGGACTGGTGGTTTATGGTTCTCGGTAAAGAGAAAAAGAAACGAAGAAAAAGAGATAAACTAGAGTCTAGAGGGAATAAGACTGTTGCAGATCCTAGATTAGGAGCTAGGGTTTCTGCAAAGGAGAGAAGAAGGGGTGGAGAGGAGAGAGAAGCGGTCTGAGAAGATGAGAAAGAAGAGGAGATGACTTGCCTGGTGCAGCTTCCTGGTGGTCACCAACTGGAGTTAGGTCCAAGGGAGGTGGGGAGGGGAAGAAGACTGTTCAATGACATTGAGCGTTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATTAGGAAATATTCACATTAGTGAAATTACTTCAAGTGCAAGAACTGTTAATAAAAATTCCAACCATAGTGGACGGTAAGCTTTCTTCTTAAGACTTGAAATCTAACAAGTTAAAATTGGTTAGAGAAGCAATTATTCGATTATGTATCATAAGATCATCATTTACTGCTAACTCATTCAGATGAAGTAGCAGTAATATTGAACACGATTTGCATTATGCCGATTGGCTAAATTGTCTCATGATAATGTTGGTTGTTACAGGAACTGATCATTCAATTCCCCACCTATATGACATAAACACTTTCAAATGCTACCTGCCACTAAATTTCCAAGATATGGGTGTCAATAGTGCTATTAATCAGGTAAATTGGGTATCATAGTATGCATTGGTCAGAGGATTCTTTACTCACCATTATATTTCCTTACAGGTTAGGTATTCATCTACAGGTGGAATGTATGTAACTGCATCCAAAGATGGTGCAATTCGGTTGTGGGATGGGGTAACAGCTAGCTGTGTGCGATCTATAGATGGTGCACA</genome_strand>
        <mrna_strand>ATTTCTGAGCACAAG..................................................................................................AATGTTGCAAGGTGTGCCAGATAATAGCCCTGNATGGAAGATTTCTTGCTACTGGAAGTGCAGACACATCAATTAAATTGTTTGAG.........................................................................ATTGCAAAAGTTAAGCAAATGATGCAGCCAGAAGCAAGGGATTGCCCAGTGAGGCCTGTTATACGGACTTTTTATGATCATCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTGATTTTTCCAAAACAGTAGCAAAGAGAGCATTTAGAGTGATTCAG.......................................................................................................GATACACATAATGTAAGGACGGTGTCATTTCATCCTTCCGGGGACTATCTTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725686" ref_strand="+" ref_description="SGN-E725686 [LA05BC12]">
      <seq>gccttccattctgaagatgaccaccttttgatttcagacaaagaaggtttctctttgcggccttctccagataccctacaagacacctatccaaaagcccatcctcttgcttttctgctgagcttgtctccttgtggtttttttatagccatttgctgtccattacagcctttgagtaggggtatccggagttcaaaagtcttggtaaactagtcgatattgaccatttggggcagttaatgaagtttttctatcttaaatgctaaattgtaccatccagcattcaagactggttctggaataatgataacagatctaccccccacattaatggctacaatgctcatatatctcccatattcattatgtttcgtagtgcagaagtttcctcttttctttcagtatatctccatctccctgtgactgtcttctgaccagtggaagcttctcttagcaggaaacagatccattccattaccttactgctcacggnagttcttcgcatcattcttcgacttcttgcacccactcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="-" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="131548" stop="130415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131248" g_stop="130715" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="-" ref_id="SGN-E725686" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131248" e_stop="130715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCATTCAGAAGATGACCACCTTTTGATTTCAGACAAAGAAGGTTTCTCTTTGCGGCCTTCTCCAGATACCCTACAAGACACCTATCCAAAAGCCCATCCTCTTGCTTTTCTGCTGAGCTTGTCTCCTTGTGGTTTTTTTATAGCCATTTGCTGTCCATTACAGCCTTTGAGTAGGGGTATCCGGAGTTCAAAAGTCTTGGTAAACTAGTCGATATTGACCATTTGGGGCAGTTAATGAAGTTTTTCTATCTTAAATGCTAAATTGTACCATCCAGCATTCAAGACTGGTTCTGGAATAATGATAACAGATCTACCCCCCACATTAATGGCTACAATGCTCATATATCTCCCATATTCATTATGTTTCGTAGTGCAGAAGTTTCCTCTTTTCTTTCAGTATATCTCCATCTCCCTGTGACTTTCTTCTGACCAGTGGAAGCTTCTCTTAGCAGGAAACAGATCCATTCCATTACCTTACTGCTCACGGTAGTTCTTCGCATCATTCTTCGACTTCTTTCCACCCACTCGT</genome_strand>
        <mrna_strand>GCCTTCCATTCTGAAGATGACCACCTTTTGATTTCAGACAAAGAAGGTTTCTCTTTGCGGCCTTCTCCAGATACCCTACAAGACACCTATCCAAAAGCCCATCCTCTTGCTTTTCTGCTGAGCTTGTCTCCTTGTGGTTTTTTTATAGCCATTTGCTGTCCATTACAGCCTTTGAGTAGGGGTATCCGGAGTTCAAAAGTCTTGGTAAACTAGTCGATATTGACCATTTGGGGCAGTTAATGAAGTTTTTCTATCTTAAATGCTAAATTGTACCATCCAGCATTCAAGACTGGTTCTGGAATAATGATAACAGATCTACCCCCCACATTAATGGCTACAATGCTCATATATCTCCCATATTCATTATGTTTCGTAGTGCAGAAGTTTCCTCTTTTCTTTCAGTATATCTCCATCTCCCTGTGACTGTCTTCTGACCAGTGGAAGCTTCTCTTAGCAGGAAACAGATCCATTCCATTACCTTACTGCTCACGGNAGTTCTTCGCATCATTCTTCGACTTC-TTGCACCCACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302176" ref_strand="+" ref_description="SGN-E302176 [cLEW-19-L18]">
      <seq>gaccccgaaggcttcgcatgccttaaccattgtgatttttgtccactttgatgtctcgactacagttggtttgtctataacctgtggattggggttaccttcataccatgtgaatggtaaagcttctcttattgctatcgaggggaaatctgtatctgagttgaaataggcaaccagttccctgcttgaggtgtgttgttgcaatagcctgtggattctttcaagggtaattctttcatcatctgcatctgactgccccactcctgatatttgctctacgaattatgtttgtgatagaacactgaatctattagaagctgggttgggtttttaaacttgccaaatggttataagtttaaagagtttggcctcatttaaaactttagctttttctctcttgccatttgggcctgtttggtaataaatctgatcagcttctaggctcacttgtagttgattcagcactggaccactcccattaacattattagattctttgacttttgcccttttgtccactgggcaatccaggttgtccctttttggagtaaagttgtcctcttttgaattaaagttgctccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0047D08-jOXXF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0047D08.1" temp_strand="+" temp_description="C12HBa0047D08.1  AC235477.2 htgs_phase:2 submitted_to_sgn_as:gi|238015498|gb|AC235477.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-47D8, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces">
        <position start="146162" stop="147347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146462" g_stop="147047" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0047D08.1" gen_strand="+" ref_id="SGN-E302176" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0047D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146462" e_stop="147047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCGAAGGCTTTGCATGCCTTAACCATTGTGCTTTTTGTCCACTTTGATGTCTCGACTACAGTTGGTTTGTCTATAACCTGTGGATTGGGGTTACCTTCATACCAAGTCAGTGATAAAGCTTCTCTTATTGCTATCGAGGGGAAATCTGTATCTGAGCTGGAAAAGGCAACCAG-TCCCTGCTTGAGGTGTATTGTTGCAATGGCCTGTGGATTCTTTCAAGGGTAATTCTTTCATCATCTGCATCTGACTGCTCCACTCCTGATATTTGCTCTACGGATTCTGTTTGTGATAGAGCACTGAATCTATTAGAAGCTGGGTTGGGTTTTTTGACTTGCCAAATGGTTTTAAGCTTAAAGAGTTTGGCCTCATTTAAAACTTTAGTTTTTCCCCTCTTGCCATTTGGGCCTGTTTGGTAATAAATCTGATCAGCTTCTAGGCCCATTTGTAGTTGATTCAGCACTGGGCCCACTCCCATTAACATTATTAGATTCTTTGACTTTTGCCCTTCTGTCCACTAGACAATCCAGGTTGTCCCTTTTTGAAGTAAAGCTGTCCTCTTTTGAATTAAAGCTGCTCCTTTTT</genome_strand>
        <mrna_strand>GACCCCGAAGGCTTCGCATGCCTTAACCATTGTGATTTTTGTCCACTTTGATGTCTCGACTACAGTTGGTTTGTCTATAACCTGTGGATTGGGGTTACCTTCATACCATGTGAATGGTAAAGCTTCTCTTATTGCTATCGAGGGGAAATCTGTATCTGAGTTGAAATAGGCAACCAGTTCCCTGCTTGAGGTGTGTTGTTGCAATAGCCTGTGGATTCTTTCAAGGGTAATTCTTTCATCATCTGCATCTGACTGCCCCACTCCTGATATTTGCTCTACGAATTATGTTTGTGATAGAACACTGAATCTATTAGAAGCTGGGTTGGGTTTTTAAACTTGCCAAATGGTTATAAGTTTAAAGAGTTTGGCCTCATTTAAAACTTTAGCTTTTTCTCTCTTGCCATTTGGGCCTGTTTGGTAATAAATCTGATCAGCTTCTAGGCTCACTTGTAGTTGATTCAGCACT-GGACCACTCCCATTAACATTATTAGATTCTTTGACTTTTGCCCTTTTGTCCACTGGGCAATCCAGGTTGTCCCTTTTTGGAGTAAAGTTGTCCTCTTTTGAATTAAAGTTGCTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31184" PGL_stop="32351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31184" e_stop="31260"/>
            <exon e_start="31895" e_stop="32351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="31184" e_stop="31260" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31261" i_stop="31894" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="31895" e_stop="32351" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31184" stop="31260"/>
              <exon start="31895" stop="32351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTC : TCTCTTCATTCCCCTCGACGGCAAGTATGACGGACCGTCATAGGCACAACGGTCTGTCGAGGGCCTTCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCGCGACGGACCGTCACAAGCTTTGTAATCCCACACTTGGTCAGACTTCTCCATCTTCCTTCAGCAGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCACGACGAACCTTCATAAGCTCCGTAAGTGGTCTCTTCTGCAATTCTTCGCTCAAAATCTCCGCATTCAGATTTGGACAGATTCCTGCAAATCAAAGAGAAACTTATATAAAAATTAGAACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACAGTATATCATCACGACACTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S :   L  F  I  P  L  D  G  K  Y  D  G  P  S  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  A  T  D  R  H  K  L  C  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  M  L  P  P  T  D  R  H  K  H  D  E  P  S  *  A  P  *  V  V  S  S  A  I  L  R  S  K  S  P  H  S  D  L  D  R  F  L  Q  I  K  E  K  L  I  *  K  L  E  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  Q  Y  I  I  T  T  L </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S   : L  S  S  F  P  S  T  A  S  M  T  D  R  H  R  H  N  G  L  S  R  A  F  V  L  K  H  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  R  R  T  V  T  S  F  V  I  P  H  L  V  R  L  L  H  L  P  S  A  A  A  L  C  C  H  L  R  T  V  T  S  T  T  N  L  H  K  L  R  K  W  S  L  L  Q  F  F  A  Q  N  L  R  I  Q  I  W  T  D  S  C  K  S  K  R  N  L  Y  K  N  *  N  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  S  I  S  S  R  H   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  :  S  L  H  S  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  C  R  G  P  S  F  *  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  R  D  G  P  S  Q  A  L  *  S  H  T  W  S  D  F  S  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  F  I  S  S  V  S  G  L  F  C  N  S  S  L  K  I  S  A  F  R  F  G  Q  I  P  A  N  Q  R  E  T  Y  I  K  I  R  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  H  H  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32078" stop="32314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFSIFLQQLHYAATYGPSQARRTFISSVSGLFCNSSLKISAFRFGQIPANQRETYIKIRTKRLLDTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31938" stop="32168"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLESGYWDHFSDLHDEPAGRTVIAATDRHKLCNPTLGQTSPSSFSSCTMLPPTDRHKHDEPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31185" stop="31260"/>
                    <exon start="31895" stop="32049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFSLSSFPSTASMTDRHRHNGLSRAFVLKHFNSWNLGTGITSLIFTTNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32050" stop="32268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRTVTSFVIPHLVRLLHLPSAAALCCHLRTVTSTTNLHKLRKWSLLQFFAQNLRIQIWTDSCKSKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="51541" PGL_stop="39473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51541" e_stop="51332"/>
            <exon e_start="42447" e_stop="42369"/>
            <exon e_start="41927" e_stop="41866"/>
            <exon e_start="41792" e_stop="41693"/>
            <exon e_start="41250" e_stop="41209"/>
            <exon e_start="41130" e_stop="41089"/>
            <exon e_start="41008" e_stop="40860"/>
            <exon e_start="39798" e_stop="39473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.666" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51541" e_stop="51332" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.666">
            <gDNA_intron_boundary i_start="51331" i_stop="42448" i_length="8884"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42447" e_stop="42369" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42368" i_stop="41928" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41927" e_stop="41866" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41792" e_stop="41693" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.864">
            <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41250" e_stop="41209" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.899">
            <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41130" e_stop="41089" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41008" e_stop="40860" e_length="149"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="39798" e_stop="39473" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51541" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51541" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51541" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51541" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51540" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51540" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51532" stop="51332"/>
              <exon start="42447" stop="42369"/>
              <exon start="41927" stop="41866"/>
              <exon start="41792" stop="41774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41920" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41213" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40993" stop="40860"/>
              <exon start="39798" stop="39473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39790" stop="39473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAG : CATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATACTCAG : ATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG : ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG : ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG : GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG : CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGG : ATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAG</gDNA_template>
            <first_frame> V  R  D  K  K  R  E  K  N  G  K  R  K  S  R  T  K  E  N  R  E  Q  N  K  Q  A  S  Y  F  C  *  E  K  K  W  T  S  *  E  S  L  *  V  I  Y  T  L  *  C  *  S  C  S  H  H  L  L  *  P  R  K  T  L  *  V  F  K  C  F  Q  :  H  D  D  N  T  *  K  V  S  T  M  Q  L  R  I  F  G  P  D  V  T  G  *  *  Y  S   : D  E  L  Q  *  V  C  E  A  K  S  *  S  *  A  P  S  T  F  S  K  :  T  Y  S  W  R  G  F  G  H  T  K  L  E  R  T  *  A  A  *  A  P  I  G  C  I  F  E  E  S  *  I  K  K   : D  S  I  Y  A  G  S  A  G  R  P  S  R  K   : G  A  N  A  G  R  S  K  *  T  T  K  K  Q   : A  G  R  K  C  S  *  N  S  T  W  I  V  M  G  K  *  W  R  T  N  N  G  I  Q  S  T  P  S  T  N  Y  C  T  T  F  L  S  T  S  P  F  E  F  F  I  A  S  I  R  :  I  Q  S  K  Y  G  C  K  *  S  *  G  *  C  S  N  N  C  S  *  Y  *  W  I  Y  S  R  V  D  A  L  M  D  *  H  S  N  I  C  S  L  V  L  Y  E  L  I  *  L  M  L  F  L  W  W  P  L  I  C  I  *  Q  L  T  I  I  V  E  V  V  R  R  I  I  H  S  T  C  Y  K  N  N  N  C  R  P  H  L  N  Y  A  L  *  H  L  G  I  Y  D  I  Y  M  Y  L  I  F  L  F   </first_frame>
            <second_frame>  L  E  T  R  K  E  R  K  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  I  L  C  D  A  E  V  A  L  I  I  F  S  S  R  G  K  L  Y  E  F  S  S  A  S  S :   M  M  T  T  L  E  K  Y  Q  Q  C  S  Y  A  S  L  D  P  M  L  P  V  S  D  T  Q  :  M  N  Y  N  E  Y  V  R  L  K  A  R  V  E  L  L  Q  R  S  Q  R :   H  I  L  G  E  D  L  G  T  L  N  S  K  E  L  E  Q  L  E  H  Q  L  D  A  S  L  K  K  V  R  S  K  K  :  T  Q  S  M  L  D  Q  L  A  D  L  Q  E  K  :  E  Q  M  L  E  E  A  N  K  Q  L  K  N  K  :  L  E  E  S  A  A  R  I  P  L  G  L  S  W  G  N  N  G  G  Q  T  M  E  Y  N  R  L  P  P  Q  T  T  A  Q  P  F  F  Q  P  L  R  L  N  S  S  S  P  Q  F  G :   Y  N  P  N  M  G  A  N  D  H  E  V  N  A  A  T  T  A  H  N  I  N  G  F  I  P  G  W  M  L  *  W  I  N  I  V  I  F  V  L  L  Y  C  M  N  *  Y  N  *  C  C  F  C  G  G  H  *  S  V  F  S  N  L  Q  L  L  L  K  *  *  G  E  *  F  T  Q  L  V  I  K  I  T  T  A  G  P  I  S  T  M  H  Y  D  I  L  E  F  M  I  Y  I  C  I  *  Y  F  C  L  </second_frame>
            <third_frame>   *  R  Q  E  K  R  E  K  W  E  E  E  E  *  N  *  R  E  *  R  T  K  *  T  G  K  L  L  L  L  R  E  E  M  D  F  L  R  K  L  M  S  Y  L  Y  F  V  M  L  K  L  L  S  S  S  S  L  A  A  E  N  S  M  S  F  Q  V  L  P   : A  *  *  Q  H  L  K  S  I  N  N  A  V  T  H  L  W  T  R  C  Y  R  L  V  I  L  R :   *  T  T  M  S  M  *  G  *  K  L  E  L  S  S  F  N  V  L  K   : D  I  F  L  E  R  I  W  A  H  *  T  R  K  N  L  S  S  L  S  T  N  W  M  H  L  *  R  K  L  D  Q  K  R :   L  N  L  C  W  I  S  W  Q  T  F  K  K  R :   S  K  C  W  K  K  Q  I  N  N  *  K  T  S :   W  K  K  V  Q  L  E  F  H  L  D  C  H  G  E  I  M  E  D  K  Q  W  N  T  I  D  S  L  H  K  L  L  H  N  L  S  F  N  L  S  V  *  I  L  H  R  L  N  S   : D  T  I  Q  I  W  V  Q  M  I  M  R  L  M  Q  Q  Q  L  L  I  I  L  M  D  L  F  Q  G  G  C  S  N  G  L  T  *  *  Y  L  F  S  C  I  V  *  T  N  I  I  N  V  V  F  V  V  A  T  N  L  Y  L  A  T  Y  N  Y  C  *  S  S  E  E  N  N  S  L  N  L  L  *  K  *  Q  L  P  A  P  S  Q  L  C  T  M  T  S  W  N  L  *  Y  I  Y  V  S  N  I  F  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51540" stop="51332"/>
                    <exon start="42447" stop="42369"/>
                    <exon start="41927" stop="41866"/>
                    <exon start="41792" stop="41693"/>
                    <exon start="41250" stop="41209"/>
                    <exon start="41130" stop="41089"/>
                    <exon start="41008" stop="40860"/>
                    <exon start="39798" stop="39705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LETRKERKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSRGKLYEFSSASSMMTTLEKYQQCSYASLDPMLPVSDTQMNYNEYVRLKARVELLQRSQRHILGEDLGTLNSKELEQLEHQLDASLKKVRSKKTQSMLDQLADLQEKEQMLEEANKQLKNKLEESAARIPLGLSWGNNGGQTMEYNRLPPQTTAQPFFQPLRLNSSSPQFGYNPNMGANDHEVNAATTAHNINGFIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41929" e_stop="41866"/>
            <exon e_start="41792" e_stop="41693"/>
            <exon e_start="41250" e_stop="41209"/>
            <exon e_start="41130" e_stop="41089"/>
            <exon e_start="41008" e_stop="40860"/>
            <exon e_start="39798" e_stop="39473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.864" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41929" e_stop="41866" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="41865" i_stop="41793" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="41792" e_stop="41693" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.864">
            <gDNA_intron_boundary i_start="41692" i_stop="41251" i_length="442"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41250" e_stop="41209" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.899">
            <gDNA_intron_boundary i_start="41208" i_stop="41131" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41130" e_stop="41089" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41088" i_stop="41009" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41008" e_stop="40860" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40859" i_stop="39799" i_length="1061"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="39798" e_stop="39473" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41929" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41920" stop="41866"/>
              <exon start="41792" stop="41693"/>
              <exon start="41250" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41213" stop="41209"/>
              <exon start="41130" stop="41089"/>
              <exon start="41008" stop="40860"/>
              <exon start="39798" stop="39479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40993" stop="40860"/>
              <exon start="39798" stop="39473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39790" stop="39473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAG : ACATATTCTTGGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAG : ACTCAATCTATGCTGGATCAGCTGGCAGACCTTCAAGAAAAG : GAGCAAATGCTGGAAGAAGCAAATAAACAACTAAAAAACAAG : CTGGAAGAAAGTGCAGCTAGAATTCCACTTGGATTGTCATGGGGAAATAATGGAGGACAAACAATGGAATACAATCGACTCCCTCCACAAACTACTGCACAACCTTTCTTTCAACCTCTCCGTTTGAATTCTTCATCGCCTCAATTCGG : ATACAATCCAAATATGGGTGCAAATGATCATGAGGTTAATGCAGCAACAACTGCTCATAATATTAATGGATTTATTCCAGGGTGGATGCTCTAATGGATTAACATAGTAATATTTGTTCTCTTGTATTGTATGAACTAATATAATTAATGTTGTTTTTGTGGTGGCCACTAATCTGTATTTAGCAACTTACAATTATTGTTGAAGTAGTGAGGAGAATAATTCACTCAACTTGTTATAAAAATAACAACTGCCGGCCCCATCTCAACTATGCACTATGACATCTTGGAATTTATGATATATATATGTATCTAATATTTTTGTTTAG</gDNA_template>
            <first_frame> R  *  T  T  M  S  M  *  G  *  K  L  E  L  S  S  F  N  V  L  K   : D  I  F  L  E  R  I  W  A  H  *  T  R  K  N  L  S  S  L  S  T  N  W  M  H  L  *  R  K  L  D  Q  K  R :   L  N  L  C  W  I  S  W  Q  T  F  K  K  R :   S  K  C  W  K  K  Q  I  N  N  *  K  T  S :   W  K  K  V  Q  L  E  F  H  L  D  C  H  G  E  I  M  E  D  K  Q  W  N  T  I  D  S  L  H  K  L  L  H  N  L  S  F  N  L  S  V  *  I  L  H  R  L  N  S   : D  T  I  Q  I  W  V  Q  M  I  M  R  L  M  Q  Q  Q  L  L  I  I  L  M  D  L  F  Q  G  G  C  S  N  G  L  T  *  *  Y  L  F  S  C  I  V  *  T  N  I  I  N  V  V  F  V  V  A  T  N  L  Y  L  A  T  Y  N  Y  C  *  S  S  E  E  N  N  S  L  N  L  L  *  K  *  Q  L  P  A  P  S  Q  L  C  T  M  T  S  W  N  L  *  Y  I  Y  V  S  N  I  F  V  * </first_frame>
            <second_frame>  D  E  L  Q  *  V  C  E  A  K  S  *  S  *  A  P  S  T  F  S  K  :  T  Y  S  W  R  G  F  G  H  T  K  L  E  R  T  *  A  A  *  A  P  I  G  C  I  F  E  E  S  *  I  K  K   : D  S  I  Y  A  G  S  A  G  R  P  S  R  K   : G  A  N  A  G  R  S  K  *  T  T  K  K  Q   : A  G  R  K  C  S  *  N  S  T  W  I  V  M  G  K  *  W  R  T  N  N  G  I  Q  S  T  P  S  T  N  Y  C  T  T  F  L  S  T  S  P  F  E  F  F  I  A  S  I  R  :  I  Q  S  K  Y  G  C  K  *  S  *  G  *  C  S  N  N  C  S  *  Y  *  W  I  Y  S  R  V  D  A  L  M  D  *  H  S  N  I  C  S  L  V  L  Y  E  L  I  *  L  M  L  F  L  W  W  P  L  I  C  I  *  Q  L  T  I  I  V  E  V  V  R  R  I  I  H  S  T  C  Y  K  N  N  N  C  R  P  H  L  N  Y  A  L  *  H  L  G  I  Y  D  I  Y  M  Y  L  I  F  L  F   </second_frame>
            <third_frame>   M  N  Y  N  E  Y  V  R  L  K  A  R  V  E  L  L  Q  R  S  Q  R :   H  I  L  G  E  D  L  G  T  L  N  S  K  E  L  E  Q  L  E  H  Q  L  D  A  S  L  K  K  V  R  S  K  K  :  T  Q  S  M  L  D  Q  L  A  D  L  Q  E  K  :  E  Q  M  L  E  E  A  N  K  Q  L  K  N  K  :  L  E  E  S  A  A  R  I  P  L  G  L  S  W  G  N  N  G  G  Q  T  M  E  Y  N  R  L  P  P  Q  T  T  A  Q  P  F  F  Q  P  L  R  L  N  S  S  S  P  Q  F  G :   Y  N  P  N  M  G  A  N  D  H  E  V  N  A  A  T  T  A  H  N  I  N  G  F  I  P  G  W  M  L  *  W  I  N  I  V  I  F  V  L  L  Y  C  M  N  *  Y  N  *  C  C  F  C  G  G  H  *  S  V  F  S  N  L  Q  L  L  L  K  *  *  G  E  *  F  T  Q  L  V  I  K  I  T  T  A  G  P  I  S  T  M  H  Y  D  I  L  E  F  M  I  Y  I  C  I  *  Y  F  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41927" stop="41866"/>
                    <exon start="41792" stop="41693"/>
                    <exon start="41250" stop="41209"/>
                    <exon start="41130" stop="41089"/>
                    <exon start="41008" stop="40860"/>
                    <exon start="39798" stop="39705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNYNEYVRLKARVELLQRSQRHILGEDLGTLNSKELEQLEHQLDASLKKVRSKKTQSMLDQLADLQEKEQMLEEANKQLKNKLEESAARIPLGLSWGNNGGQTMEYNRLPPQTTAQPFFQPLRLNSSSPQFGYNPNMGANDHEVNAATTAHNINGFIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="56430" PGL_stop="56591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56430" e_stop="56591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="56430" e_stop="56591" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56430" stop="56591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCCGAGGAGTAGACAAAAGAAAAACAAAATTTTGCCGAACCTCGTTAATTCATAGTGTTCTTTTTGTTGTTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAGTAGTTGTGATTCC</gDNA_template>
            <first_frame> L  V  L  F  W  S  E  I  N  I  G  W  L  C  P  R  S  R  Q  K  K  N  K  I  L  P  N  L  V  N  S  *  C  S  F  C  C  C  L  I  Y  Y  L  L  A  T  F  R  Y  S  S  C  D  S </first_frame>
            <second_frame>  L  Y  S  F  G  V  K  *  I  L  V  G  C  V  R  G  V  D  K  R  K  T  K  F  C  R  T  S  L  I  H  S  V  L  F  V  V  V  S  F  T  I  Y  *  L  P  L  D  I  V  V  V  I   </second_frame>
            <third_frame>   C  T  L  L  E  *  N  K  Y  W  L  V  V  S  E  E  *  T  K  E  K  Q  N  F  A  E  P  R  *  F  I  V  F  F  L  L  L  S  H  L  L  F  I  S  Y  L  *  I  *  *  L  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0047D08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="67911" PGL_stop="70496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67941" e_stop="68099"/>
            <exon e_start="69326" e_stop="69368"/>
            <exon e_start="69501" e_stop="69580"/>
            <exon e_start="69671" e_stop="69712"/>
            <exon e_start="69894" e_stop="70496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.021" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.104" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="67941" e_stop="68099" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.021" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68100" i_stop="69325" i_length="1226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69326" e_stop="69368" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.104">
            <gDNA_intron_boundary i_start="69369" i_stop="69500" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69501" e_stop="69580" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.816">
            <gDNA_intron_boundary i_start="69581" i_stop="69670" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69671" e_stop="69712" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69713" i_stop="69893" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="69894" e_stop="70496" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67941" stop="68099"/>
              <exon start="69326" stop="69368"/>
              <exon start="69501" stop="69580"/>
              <exon start="69671" stop="69712"/>
              <exon start="69894" stop="70460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69526" stop="69580"/>
              <exon start="69671" stop="69712"/>
              <exon start="69894" stop="70496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTCCACAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAG : ATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCG : AGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTAT : CTTTGGAGGATCTACGAAAAACTCAGCCAGAAGAAAATCGAG : GAAATCTGTCCAAAGTTGAATGCGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTAAGGAGCTGATGACGGTCCGTCGTGCTTGTGACGATTCGTAGGTGGCAGCGTAGAGAAGCTGCTGAAGGAAGATGGGAAAGTCTGACCAAGTGTGGGGTTACGTAGCTTGTGACGGTCCGTCGTGGCTATGACGGTTCGTCATGAAGTTCAGAGAAGTGATCCCAATACCCAGATTCCAAGAGTTGAAGTGTTTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACTGTCCGTCATACTTGCCGTCGAGGAGATTGAAGAGAGCAGCAGAAGAAATTGCTAAGTATGGGACGATGGAGACGGTCCGTCGCGACCACGACGGTCCGTCGCGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAATTAGAATCCTTGTTTAATTAGGTTTTTTATTTTTTATAAATAGTTCAAAAAAACCTCGTTTTTGAGGTTAGACTCCGTATTGTTAGGCTCCATATTATTAGACTTTTGGATTGTTGGATTATTGGAACTTTTGGTTGTTGATTAGTGTTAGATTTTGAGATTCTTA</gDNA_template>
            <first_frame> V  F  H  S  V  D  S  I  S  L  G  L  K  L  Q  F  S  P  S  V  E  V  F  V  F  T  I  E  T  C  S  V  *  S  P  R  F  R  R  R  F  N  P  L  C  L  F  L  S  L  E  I  K  :  I  Q  A  A  L  T  T  S  L  A  V  D  S  S   : E  N  Y  D  F  V  R  K  K  K  N  P  K  D  S  D  V  W  V  E  P  *  T  E  V  T  Y  :  L  W  R  I  Y  E  K  L  S  Q  K  K  I  E  :  E  I  C  P  K  L  N  A  E  I  L  S  E  E  M  Q  K  R  P  P  K  E  L  M  T  V  R  R  A  C  D  D  S  *  V  A  A  *  R  S  C  *  R  K  M  G  K  S  D  Q  V  W  G  Y  V  A  C  D  G  P  S  W  L  *  R  F  V  M  K  F  R  E  V  I  P  I  P  R  F  Q  E  L  K  C  F  E  T  K  T  L  D  G  P  L  C  L  *  L  S  V  I  L  A  V  E  E  I  E  E  S  S  R  R  N  C  *  V  W  D  D  G  D  G  P  S  R  P  R  R  S  V  A  R  S  V  D  P  A  A  F  W  Q  I  S  S  N  *  N  P  C  L  I  R  F  F  I  F  Y  K  *  F  K  K  T  S  F  L  R  L  D  S  V  L  L  G  S  I  L  L  D  F  W  I  V  G  L  L  E  L  L  V  V  D  *  C  *  I  L  R  F  L </first_frame>
            <second_frame>  S  S  T  V  *  T  R  Y  R  S  V  *  S  F  S  F  H  H  Q  L  K  F  S  F  S  P  S  K  L  A  R  F  E  A  Q  D  F  V  V  A  S  I  L  C  V  Y  F  F  L  L  K  *  R :   S  R  Q  L  L  L  P  A  L  R  S  T  L  P  :  R  T  M  I  L  *  E  R  R  K  I  L  K  I  Q  T  C  G  L  S  R  E  L  K  *  P  I :   F  G  G  S  T  K  N  S  A  R  R  K  S  R :   K  S  V  Q  S  *  M  R  R  F  *  A  K  K  C  R  R  D  H  L  R  S  *  *  R  S  V  V  L  V  T  I  R  R  W  Q  R  R  E  A  A  E  G  R  W  E  S  L  T  K  C  G  V  T  *  L  V  T  V  R  R  G  Y  D  G  S  S  *  S  S  E  K  *  S  Q  Y  P  D  S  K  S  *  S  V  L  K  R  R  P  S  T  D  R  C  A  Y  D  C  P  S  Y  L  P  S  R  R  L  K  R  A  A  E  E  I  A  K  Y  G  T  M  E  T  V  R  R  D  H  D  G  P  S  R  G  P  S  T  Q  P  R  F  G  R  F  P  A  I  R  I  L  V  *  L  G  F  L  F  F  I  N  S  S  K  K  P  R  F  *  G  *  T  P  Y  C  *  A  P  Y  Y  *  T  F  G  L  L  D  Y  W  N  F  W  L  L  I  S  V  R  F  *  D  S   </second_frame>
            <third_frame>   L  P  Q  C  R  L  D  I  A  R  F  E  A  S  V  F  T  I  S  *  S  F  R  F  H  H  R  N  L  L  G  L  K  P  K  I  S  S  S  L  Q  S  S  V  S  I  S  F  S  *  N  K   : D  P  G  S  S  Y  Y  Q  P  C  G  R  L  F  R :   E  L  *  F  C  K  K  E  E  K  S  *  R  F  R  R  V  G  *  A  V  N  *  S  D  L   : S  L  E  D  L  R  K  T  Q  P  E  E  N  R   : G  N  L  S  K  V  E  C  G  D  F  E  R  R  N  A  E  E  T  T  *  G  A  D  D  G  P  S  C  L  *  R  F  V  G  G  S  V  E  K  L  L  K  E  D  G  K  V  *  P  S  V  G  L  R  S  L  *  R  S  V  V  A  M  T  V  R  H  E  V  Q  R  S  D  P  N  T  Q  I  P  R  V  E  V  F  *  N  E  D  P  R  R  T  V  V  P  M  T  V  R  H  T  C  R  R  G  D  *  R  E  Q  Q  K  K  L  L  S  M  G  R  W  R  R  S  V  A  T  T  T  V  R  R  E  V  R  R  P  S  R  V  L  A  D  F  Q  Q  L  E  S  L  F  N  *  V  F  Y  F  L  *  I  V  Q  K  N  L  V  F  E  V  R  L  R  I  V  R  L  H  I  I  R  L  L  D  C  W  I  I  G  T  F  G  C  *  L  V  L  D  F  E  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70141" stop="70347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLKRRPSTDRCAYDCPSYLPSRRLKRAAEEIAKYGTMETVRRDHDGPSRGPSTQPRFGRFPAIRILV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67911" e_stop="68099"/>
            <exon e_start="69326" e_stop="69638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.021" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67911" e_stop="68099" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.021" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68100" i_stop="69325" i_length="1226"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="69326" e_stop="69638" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67911" stop="68099"/>
              <exon start="69326" stop="69638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCTAGAAGCTAAAAAAAAAACCTAAGTCGTCTTCCACAGTGTAGACTCGATATCGCTCGGTTTGAAGCTTCAGTTTTCACCATCAGTTGAAGTTTTCGTTTTCACCATCGAAACTTGCTCGGTTTGAAGCCCAAGATTTCGTCGTCGCTTCAATCCTCTGTGTCTATTTCTTTCTCTTGAAATAAAG : ATCCAGGCAGCTCTTACTACCAGCCTTGCGGTCGACTCTTCCGGTTAGTTATAAATTCGTTATAAAAAATGGATATGCTTTCTGTTAGGTTAGTTGTACTTGTTAATTTGGCATTAAGATGTTGTGAATGTTACTGCAAATTTAGAACTAATATCATTTAAGACAAACTGTTCAGAGAACTATGATTTTGTAAGAAAGAAGAAAAATCCTAAAGATTCAGACGTGTGGGTTGAGCCGTGAACTGAAGTGACCTATGTAAGCCTCTAATTTAAAATAGTAGTTAATTATTTTCTAAATTTATATTCTAATATTA</gDNA_template>
            <first_frame> P  L  E  A  K  K  K  T  *  V  V  F  H  S  V  D  S  I  S  L  G  L  K  L  Q  F  S  P  S  V  E  V  F  V  F  T  I  E  T  C  S  V  *  S  P  R  F  R  R  R  F  N  P  L  C  L  F  L  S  L  E  I  K  :  I  Q  A  A  L  T  T  S  L  A  V  D  S  S  G  *  L  *  I  R  Y  K  K  W  I  C  F  L  L  G  *  L  Y  L  L  I  W  H  *  D  V  V  N  V  T  A  N  L  E  L  I  S  F  K  T  N  C  S  E  N  Y  D  F  V  R  K  K  K  N  P  K  D  S  D  V  W  V  E  P  *  T  E  V  T  Y  V  S  L  *  F  K  I  V  V  N  Y  F  L  N  L  Y  S  N  I  </first_frame>
            <second_frame>  R  *  K  L  K  K  K  P  K  S  S  S  T  V  *  T  R  Y  R  S  V  *  S  F  S  F  H  H  Q  L  K  F  S  F  S  P  S  K  L  A  R  F  E  A  Q  D  F  V  V  A  S  I  L  C  V  Y  F  F  L  L  K  *  R :   S  R  Q  L  L  L  P  A  L  R  S  T  L  P  V  S  Y  K  F  V  I  K  N  G  Y  A  F  C  *  V  S  C  T  C  *  F  G  I  K  M  L  *  M  L  L  Q  I  *  N  *  Y  H  L  R  Q  T  V  Q  R  T  M  I  L  *  E  R  R  K  I  L  K  I  Q  T  C  G  L  S  R  E  L  K  *  P  M  *  A  S  N  L  K  *  *  L  I  I  F  *  I  Y  I  L  I  L </second_frame>
            <third_frame>   A  R  S  *  K  K  N  L  S  R  L  P  Q  C  R  L  D  I  A  R  F  E  A  S  V  F  T  I  S  *  S  F  R  F  H  H  R  N  L  L  G  L  K  P  K  I  S  S  S  L  Q  S  S  V  S  I  S  F  S  *  N  K   : D  P  G  S  S  Y  Y  Q  P  C  G  R  L  F  R  L  V  I  N  S  L  *  K  M  D  M  L  S  V  R  L  V  V  L  V  N  L  A  L  R  C  C  E  C  Y  C  K  F  R  T  N  I  I  *  D  K  L  F  R  E  L  *  F  C  K  K  E  E  K  S  *  R  F  R  R  V  G  *  A  V  N  *  S  D  L  C  K  P  L  I  *  N  S  S  *  L  F  S  K  F  I  F  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0047D08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="85784" PGL_stop="84347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85784" e_stop="85659"/>
            <exon e_start="85034" e_stop="84347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.973" e_score="0.967"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="85784" e_stop="85659" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.973">
            <gDNA_intron_boundary i_start="85658" i_stop="85035" i_length="624"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="85034" e_stop="84347" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85784" stop="85659"/>
              <exon start="85034" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85781" stop="85659"/>
              <exon start="85034" stop="84483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCTGAATTTGATGATGGAAAACGCAGCTGCCGCAAACGTCTTGCTGGTCATAATGAGCGGAGAAGGAAGCCTCACACTGGTCTGCACTCTGGCAGAGCAGGAAAGCACTTCCAACCATATTCTG : GTACGAGGTTTCAAGGTAGCTCCTTTGTGACATCCTCCTTCATTTGCCAGGATATACTTGGCGGCAGTCTTCTTCATCAACCAAAACATGATATGCATGACTGGTATAAGAATGTAAAGGTCGAACATTGTTCTGATTACAGTCCTGAACTCACCATGCCTTTTACAAATAAACACTCACAACCTAGACCCCTTTTCACTTCATACCATACTGACAAACACTGTCCAGCTCTCCATGATGAAGGAATAACAACTATAACTAGAAGCAAAAATAATGAAAGTAGCAACTCATATCTGAATGACATTGGAGGCTCAGATTTTGTTTCCCGTTCTCTGTTCCACAGCACCTCAATAGGGAGCGATGTCTTGAATGTTATGGACTCGGACTCTCCTTTTCAAGGGATATCAAACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGGACTCGTCAAATTATTCATCTGTAGTTCCTCCTAGTGCTCACCACCTTATTACACCTCGCAGTTACAACCATTACAACATGACACAGACATCTGAATGTTTCCCAGAAGCTAGCCCAAAGGGTTCAACAAGTACAGTGTCCACTATTTATAATTTATCTGAAGTAATTTCTGCAAAGGGTCAATTGGAACACATACTAAGAAACAATTGTGGAAGTCTTCAAGGATCAGATTATGTGAA</gDNA_template>
            <first_frame> *  L  N  L  M  M  E  N  A  A  A  A  N  V  L  L  V  I  M  S  G  E  G  S  L  T  L  V  C  T  L  A  E  Q  E  S  T  S  N  H  I  L  :  V  R  G  F  K  V  A  P  L  *  H  P  P  S  F  A  R  I  Y  L  A  A  V  F  F  I  N  Q  N  M  I  C  M  T  G  I  R  M  *  R  S  N  I  V  L  I  T  V  L  N  S  P  C  L  L  Q  I  N  T  H  N  L  D  P  F  S  L  H  T  I  L  T  N  T  V  Q  L  S  M  M  K  E  *  Q  L  *  L  E  A  K  I  M  K  V  A  T  H  I  *  M  T  L  E  A  Q  I  L  F  P  V  L  C  S  T  A  P  Q  *  G  A  M  S  *  M  L  W  T  R  T  L  L  F  K  G  Y  Q  T  L  A  V  L  S  L  F  C  H  L  N  H  R  T  R  Q  I  I  H  L  *  F  L  L  V  L  T  T  L  L  H  L  A  V  T  T  I  T  T  *  H  R  H  L  N  V  S  Q  K  L  A  Q  R  V  Q  Q  V  Q  C  P  L  F  I  I  Y  L  K  *  F  L  Q  R  V  N  W  N  T  Y  *  E  T  I  V  E  V  F  K  D  Q  I  M  *  </first_frame>
            <second_frame>  S  *  I  *  *  W  K  T  Q  L  P  Q  T  S  C  W  S  *  *  A  E  K  E  A  S  H  W  S  A  L  W  Q  S  R  K  A  L  P  T  I  F  W :   Y  E  V  S  R  *  L  L  C  D  I  L  L  H  L  P  G  Y  T  W  R  Q  S  S  S  S  T  K  T  *  Y  A  *  L  V  *  E  C  K  G  R  T  L  F  *  L  Q  S  *  T  H  H  A  F  Y  K  *  T  L  T  T  *  T  P  F  H  F  I  P  Y  *  Q  T  L  S  S  S  P  *  *  R  N  N  N  Y  N  *  K  Q  K  *  *  K  *  Q  L  I  S  E  *  H  W  R  L  R  F  C  F  P  F  S  V  P  Q  H  L  N  R  E  R  C  L  E  C  Y  G  L  G  L  S  F  S  R  D  I  K  L  W  L  C  S  L  S  S  V  I  S  I  T  G  L  V  K  L  F  I  C  S  S  S  *  C  S  P  P  Y  Y  T  S  Q  L  Q  P  L  Q  H  D  T  D  I  *  M  F  P  R  S  *  P  K  G  F  N  K  Y  S  V  H  Y  L  *  F  I  *  S  N  F  C  K  G  S  I  G  T  H  T  K  K  Q  L  W  K  S  S  R  I  R  L  C  E </second_frame>
            <third_frame>   A  E  F  D  D  G  K  R  S  C  R  K  R  L  A  G  H  N  E  R  R  R  K  P  H  T  G  L  H  S  G  R  A  G  K  H  F  Q  P  Y  S   : G  T  R  F  Q  G  S  S  F  V  T  S  S  F  I  C  Q  D  I  L  G  G  S  L  L  H  Q  P  K  H  D  M  H  D  W  Y  K  N  V  K  V  E  H  C  S  D  Y  S  P  E  L  T  M  P  F  T  N  K  H  S  Q  P  R  P  L  F  T  S  Y  H  T  D  K  H  C  P  A  L  H  D  E  G  I  T  T  I  T  R  S  K  N  N  E  S  S  N  S  Y  L  N  D  I  G  G  S  D  F  V  S  R  S  L  F  H  S  T  S  I  G  S  D  V  L  N  V  M  D  S  D  S  P  F  Q  G  I  S  N  S  G  C  A  L  S  L  L  S  S  Q  S  Q  D  S  S  N  Y  S  S  V  V  P  P  S  A  H  H  L  I  T  P  R  S  Y  N  H  Y  N  M  T  Q  T  S  E  C  F  P  E  A  S  P  K  G  S  T  S  T  V  S  T  I  Y  N  L  S  E  V  I  S  A  K  G  Q  L  E  H  I  L  R  N  N  C  G  S  L  Q  G  S  D  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85782" stop="85659"/>
                    <exon start="85034" stop="84349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEFDDGKRSCRKRLAGHNERRRKPHTGLHSGRAGKHFQPYSGTRFQGSSFVTSSFICQDILGGSLLHQPKHDMHDWYKNVKVEHCSDYSPELTMPFTNKHSQPRPLFTSYHTDKHCPALHDEGITTITRSKNNESSNSYLNDIGGSDFVSRSLFHSTSIGSDVLNVMDSDSPFQGISNSGCALSLLSSQSQDSSNYSSVVPPSAHHLITPRSYNHYNMTQTSECFPEASPKGSTSTVSTIYNLSEVISAKGQLEHILRNNCGSLQGSDYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="123847" PGL_stop="138541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123847" e_stop="124023"/>
            <exon e_start="127478" e_stop="127561"/>
            <exon e_start="127697" e_stop="127808"/>
            <exon e_start="128641" e_stop="128713"/>
            <exon e_start="128812" e_stop="128895"/>
            <exon e_start="128969" e_stop="129055"/>
            <exon e_start="129646" e_stop="129697"/>
            <exon e_start="129801" e_stop="129858"/>
            <exon e_start="138265" e_stop="138365"/>
            <exon e_start="138432" e_stop="138541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.015" e_score="0.988"/>
          <exon-intron don_prob="0.898" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.300" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.929"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.943"/>
          <exon-intron don_prob="0.792" acc_prob="0.989" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.966"/>
          <exon-intron don_prob="0.959" acc_prob="0.974" e_score="0.970"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="123847" e_stop="124023" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="124024" i_stop="127477" i_length="3454"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="127478" e_stop="127561" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.015">
            <gDNA_intron_boundary i_start="127562" i_stop="127696" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127697" e_stop="127808" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.986">
            <gDNA_intron_boundary i_start="127809" i_stop="128640" i_length="832"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128641" e_stop="128713" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.300">
            <gDNA_intron_boundary i_start="128714" i_stop="128811" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="128812" e_stop="128895" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="128896" i_stop="128968" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="128969" e_stop="129055" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="129056" i_stop="129645" i_length="590"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="129646" e_stop="129697" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.792" acc_prob="0.989">
            <gDNA_intron_boundary i_start="129698" i_stop="129800" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="129801" e_stop="129858" e_length="58"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="129859" i_stop="138264" i_length="8406"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="138265" e_stop="138365" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.959" acc_prob="0.974">
            <gDNA_intron_boundary i_start="138366" i_stop="138431" i_length="66"/>
          </intron>
          <exon e_serial="10" e_score="0.973">
            <gDNA_exon_boundary e_start="138432" e_stop="138541" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123847" stop="124023"/>
              <exon start="127478" stop="127561"/>
              <exon start="127697" stop="127808"/>
              <exon start="128641" stop="128701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128699" stop="128713"/>
              <exon start="128812" stop="128895"/>
              <exon start="128969" stop="129055"/>
              <exon start="129646" stop="129697"/>
              <exon start="129801" stop="129858"/>
              <exon start="138265" stop="138365"/>
              <exon start="138432" stop="138541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTCTGGGGGTATTGTTCCTGATTGTTTCATTGAATAAATTAGGGAAGCAATAACTTAAATGGGGAGCAACCATAACAATGATAACTTGGAGCACAAACTGCAAGCCGGGAAATTGTTCCGTCATGTTAATTCTCTCATAGTCGCTCATCTTCGCGATAATAATCTCAATCAG : GCTGCAAGTGCTGTAGCTTCATCTACAATGACACCAATGAATGTTGAAGCTCCTCCCAACAAGCTACTGGAATTGGTTGCAAAG : TGGACAAAGATGACACACTGAGAGGAGTTTCTACAGCTATACCTTTTGATCCAATTGTAACTGCTGGATATGGCTCAATCCCGGCCCCTCGGGCTGCATATGTTGATTTCAG : TAGCATGAACAATACAAAAGGGCCGTCAAAAAATATCCCAAAGCATGAGTCACGACATATTTCCGAGCACAAG : AATGTTGCAAGGTGTGCCAGATTTAGCCCTGATGGAAGATTCCTTGCTACTGGAAGTGCAGACACATCAATTAAATTGTTTGAG : ATTGTAAAAGTTAAGCAAATGAAGCAGCCAGAAGCAAGGGATGGCCCAGTGAGGCCTGTTGTACGAACTTTTTATGATCATCAACAA : GTTCTTTGATTTTTCCAAAGCGGTAGCAAAGAGAGCATTTAGAGTGATTCAG : GATACACATAATGTAAGGTCGGTGTCATTTCATCCTTCAGGGGACTATCTTCTGGCAG : GAACTGATCATTCAATTCCCCACCTATATGACATAAACACTTTCAAATGCTACCTGCCACTAAATTTCCAAGATATGGGTGTCAATAGTGCTATTAATCAG : GTTAGGTATTCATCTACAGGTGGAATGTATGTAACTGCATCCAAAGATGGTGCAATTCGGTTGTGGGATGGGGTAACAGCTAGCTGTGTGCGATCTATAGATGGTGCACA</gDNA_template>
            <first_frame> K  D  S  G  G  I  V  P  D  C  F  I  E  *  I  R  E  A  I  T  *  M  G  S  N  H  N  N  D  N  L  E  H  K  L  Q  A  G  K  L  F  R  H  V  N  S  L  I  V  A  H  L  R  D  N  N  L  N  Q  :  A  A  S  A  V  A  S  S  T  M  T  P  M  N  V  E  A  P  P  N  K  L  L  E  L  V  A  K  :  W  T  K  M  T  H  *  E  E  F  L  Q  L  Y  L  L  I  Q  L  *  L  L  D  M  A  Q  S  R  P  L  G  L  H  M  L  I  S   : V  A  *  T  I  Q  K  G  R  Q  K  I  S  Q  S  M  S  H  D  I  F  P  S  T  R :   M  L  Q  G  V  P  D  L  A  L  M  E  D  S  L  L  L  E  V  Q  T  H  Q  L  N  C  L  R :   L  *  K  L  S  K  *  S  S  Q  K  Q  G  M  A  Q  *  G  L  L  Y  E  L  F  M  I  I  N  K :   F  F  D  F  S  K  A  V  A  K  R  A  F  R  V  I  Q  :  D  T  H  N  V  R  S  V  S  F  H  P  S  G  D  Y  L  L  A   : G  T  D  H  S  I  P  H  L  Y  D  I  N  T  F  K  C  Y  L  P  L  N  F  Q  D  M  G  V  N  S  A  I  N  Q  :  V  R  Y  S  S  T  G  G  M  Y  V  T  A  S  K  D  G  A  I  R  L  W  D  G  V  T  A  S  C  V  R  S  I  D  G  A   </first_frame>
            <second_frame>  K  I  L  G  V  L  F  L  I  V  S  L  N  K  L  G  K  Q  *  L  K  W  G  A  T  I  T  M  I  T  W  S  T  N  C  K  P  G  N  C  S  V  M  L  I  L  S  *  S  L  I  F  A  I  I  I  S  I  R :   L  Q  V  L  *  L  H  L  Q  *  H  Q  *  M  L  K  L  L  P  T  S  Y  W  N  W  L  Q  S :   G  Q  R  *  H  T  E  R  S  F  Y  S  Y  T  F  *  S  N  C  N  C  W  I  W  L  N  P  G  P  S  G  C  I  C  *  F  Q  :  *  H  E  Q  Y  K  R  A  V  K  K  Y  P  K  A  *  V  T  T  Y  F  R  A  Q   : E  C  C  K  V  C  Q  I  *  P  *  W  K  I  P  C  Y  W  K  C  R  H  I  N  *  I  V  *   : D  C  K  S  *  A  N  E  A  A  R  S  K  G  W  P  S  E  A  C  C  T  N  F  L  *  S  S  T   : S  S  L  I  F  P  K  R  *  Q  R  E  H  L  E  *  F  R :   I  H  I  M  *  G  R  C  H  F  I  L  Q  G  T  I  F  W  Q  :  E  L  I  I  Q  F  P  T  Y  M  T  *  T  L  S  N  A  T  C  H  *  I  S  K  I  W  V  S  I  V  L  L  I  R :   L  G  I  H  L  Q  V  E  C  M  *  L  H  P  K  M  V  Q  F  G  C  G  M  G  *  Q  L  A  V  C  D  L  *  M  V  H  </second_frame>
            <third_frame>   R  F  W  G  Y  C  S  *  L  F  H  *  I  N  *  G  S  N  N  L  N  G  E  Q  P  *  Q  *  *  L  G  A  Q  T  A  S  R  E  I  V  P  S  C  *  F  S  H  S  R  S  S  S  R  *  *  S  Q  S   : G  C  K  C  C  S  F  I  Y  N  D  T  N  E  C  *  S  S  S  Q  Q  A  T  G  I  G  C  K   : V  D  K  D  D  T  L  R  G  V  S  T  A  I  P  F  D  P  I  V  T  A  G  Y  G  S  I  P  A  P  R  A  A  Y  V  D  F  S :   S  M  N  N  T  K  G  P  S  K  N  I  P  K  H  E  S  R  H  I  S  E  H  K  :  N  V  A  R  C  A  R  F  S  P  D  G  R  F  L  A  T  G  S  A  D  T  S  I  K  L  F  E  :  I  V  K  V  K  Q  M  K  Q  P  E  A  R  D  G  P  V  R  P  V  V  R  T  F  Y  D  H  Q  Q  :  V  L  *  F  F  Q  S  G  S  K  E  S  I  *  S  D  S   : G  Y  T  *  C  K  V  G  V  I  S  S  F  R  G  L  S  S  G  R :   N  *  S  F  N  S  P  P  I  *  H  K  H  F  Q  M  L  P  A  T  K  F  P  R  Y  G  C  Q  *  C  Y  *  S   : G  *  V  F  I  Y  R  W  N  V  C  N  C  I  Q  R  W  C  N  S  V  V  G  W  G  N  S  *  L  C  A  I  Y  R  W  C  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127525" stop="127561"/>
                    <exon start="127697" stop="127808"/>
                    <exon start="128641" stop="128713"/>
                    <exon start="128812" stop="128895"/>
                    <exon start="128969" stop="129055"/>
                    <exon start="129646" stop="129654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSQQATGIGCKVDKDDTLRGVSTAIPFDPIVTAGYGSIPAPRAAYVDFSSMNNTKGPSKNIPKHESRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEIVKVKQMKQPEARDGPVRPVVRTFYDHQQVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129021" stop="129055"/>
                    <exon start="129646" stop="129697"/>
                    <exon start="129801" stop="129858"/>
                    <exon start="138265" stop="138365"/>
                    <exon start="138432" stop="138539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLYELFMIINKFFDFSKAVAKRAFRVIQDTHNVRSVSFHPSGDYLLAGTDHSIPHLYDINTFKCYLPLNFQDMGVNSAINQVRYSSTGGMYVTASKDGAIRLWDGVTASCVRSIDGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="131248" PGL_stop="130715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131248" e_stop="130715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="131248" e_stop="130715" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131248" stop="130715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTCCATTCAGAAGATGACCACCTTTTGATTTCAGACAAAGAAGGTTTCTCTTTGCGGCCTTCTCCAGATACCCTACAAGACACCTATCCAAAAGCCCATCCTCTTGCTTTTCTGCTGAGCTTGTCTCCTTGTGGTTTTTTTATAGCCATTTGCTGTCCATTACAGCCTTTGAGTAGGGGTATCCGGAGTTCAAAAGTCTTGGTAAACTAGTCGATATTGACCATTTGGGGCAGTTAATGAAGTTTTTCTATCTTAAATGCTAAATTGTACCATCCAGCATTCAAGACTGGTTCTGGAATAATGATAACAGATCTACCCCCCACATTAATGGCTACAATGCTCATATATCTCCCATATTCATTATGTTTCGTAGTGCAGAAGTTTCCTCTTTTCTTTCAGTATATCTCCATCTCCCTGTGACTTTCTTCTGACCAGTGGAAGCTTCTCTTAGCAGGAAACAGATCCATTCCATTACCTTACTGCTCACGGTAGTTCTTCGCATCATTCTTCGACTTCTTTCCACCCACTCGT</gDNA_template>
            <first_frame> A  F  H  S  E  D  D  H  L  L  I  S  D  K  E  G  F  S  L  R  P  S  P  D  T  L  Q  D  T  Y  P  K  A  H  P  L  A  F  L  L  S  L  S  P  C  G  F  F  I  A  I  C  C  P  L  Q  P  L  S  R  G  I  R  S  S  K  V  L  V  N  *  S  I  L  T  I  W  G  S  *  *  S  F  S  I  L  N  A  K  L  Y  H  P  A  F  K  T  G  S  G  I  M  I  T  D  L  P  P  T  L  M  A  T  M  L  I  Y  L  P  Y  S  L  C  F  V  V  Q  K  F  P  L  F  F  Q  Y  I  S  I  S  L  *  L  S  S  D  Q  W  K  L  L  L  A  G  N  R  S  I  P  L  P  Y  C  S  R  *  F  F  A  S  F  F  D  F  F  P  P  T  R </first_frame>
            <second_frame>  P  S  I  Q  K  M  T  T  F  *  F  Q  T  K  K  V  S  L  C  G  L  L  Q  I  P  Y  K  T  P  I  Q  K  P  I  L  L  L  F  C  *  A  C  L  L  V  V  F  L  *  P  F  A  V  H  Y  S  L  *  V  G  V  S  G  V  Q  K  S  W  *  T  S  R  Y  *  P  F  G  A  V  N  E  V  F  L  S  *  M  L  N  C  T  I  Q  H  S  R  L  V  L  E  *  *  *  Q  I  Y  P  P  H  *  W  L  Q  C  S  Y  I  S  H  I  H  Y  V  S  *  C  R  S  F  L  F  S  F  S  I  S  P  S  P  C  D  F  L  L  T  S  G  S  F  S  *  Q  E  T  D  P  F  H  Y  L  T  A  H  G  S  S  S  H  H  S  S  T  S  F  H  P  L   </second_frame>
            <third_frame>   L  P  F  R  R  *  P  P  F  D  F  R  Q  R  R  F  L  F  A  A  F  S  R  Y  P  T  R  H  L  S  K  S  P  S  S  C  F  S  A  E  L  V  S  L  W  F  F  Y  S  H  L  L  S  I  T  A  F  E  *  G  Y  P  E  F  K  S  L  G  K  L  V  D  I  D  H  L  G  Q  L  M  K  F  F  Y  L  K  C  *  I  V  P  S  S  I  Q  D  W  F  W  N  N  D  N  R  S  T  P  H  I  N  G  Y  N  A  H  I  S  P  I  F  I  M  F  R  S  A  E  V  S  S  F  L  S  V  Y  L  H  L  P  V  T  F  F  *  P  V  E  A  S  L  S  R  K  Q  I  H  S  I  T  L  L  L  T  V  V  L  R  I  I  L  R  L  L  S  T  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131248" stop="131036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFHSEDDHLLISDKEGFSLRPSPDTLQDTYPKAHPLAFLLSLSPCGFFIAICCPLQPLSRGIRSSKVLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="146462" PGL_stop="147047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146462" e_stop="147047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="146462" e_stop="147047" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146462" stop="147047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCCCGAAGGCTTTGCATGCCTTAACCATTGTGCTTTTTGTCCACTTTGATGTCTCGACTACAGTTGGTTTGTCTATAACCTGTGGATTGGGGTTACCTTCATACCAAGTCAGTGATAAAGCTTCTCTTATTGCTATCGAGGGGAAATCTGTATCTGAGCTGGAAAAGGCAACCAGTCCCTGCTTGAGGTGTATTGTTGCAATGGCCTGTGGATTCTTTCAAGGGTAATTCTTTCATCATCTGCATCTGACTGCTCCACTCCTGATATTTGCTCTACGGATTCTGTTTGTGATAGAGCACTGAATCTATTAGAAGCTGGGTTGGGTTTTTTGACTTGCCAAATGGTTTTAAGCTTAAAGAGTTTGGCCTCATTTAAAACTTTAGTTTTTCCCCTCTTGCCATTTGGGCCTGTTTGGTAATAAATCTGATCAGCTTCTAGGCCCATTTGTAGTTGATTCAGCACTGGGCCCACTCCCATTAACATTATTAGATTCTTTGACTTTTGCCCTTCTGTCCACTAGACAATCCAGGTTGTCCCTTTTTGAAGTAAAGCTGTCCTCTTTTGAATTAAAGCTGCTCCTTTTT</gDNA_template>
            <first_frame> D  P  E  G  F  A  C  L  N  H  C  A  F  C  P  L  *  C  L  D  Y  S  W  F  V  Y  N  L  W  I  G  V  T  F  I  P  S  Q  *  *  S  F  S  Y  C  Y  R  G  E  I  C  I  *  A  G  K  G  N  Q  S  L  L  E  V  Y  C  C  N  G  L  W  I  L  S  R  V  I  L  S  S  S  A  S  D  C  S  T  P  D  I  C  S  T  D  S  V  C  D  R  A  L  N  L  L  E  A  G  L  G  F  L  T  C  Q  M  V  L  S  L  K  S  L  A  S  F  K  T  L  V  F  P  L  L  P  F  G  P  V  W  *  *  I  *  S  A  S  R  P  I  C  S  *  F  S  T  G  P  T  P  I  N  I  I  R  F  F  D  F  C  P  S  V  H  *  T  I  Q  V  V  P  F  *  S  K  A  V  L  F  *  I  K  A  A  P  F  </first_frame>
            <second_frame>  T  P  K  A  L  H  A  L  T  I  V  L  F  V  H  F  D  V  S  T  T  V  G  L  S  I  T  C  G  L  G  L  P  S  Y  Q  V  S  D  K  A  S  L  I  A  I  E  G  K  S  V  S  E  L  E  K  A  T  S  P  C  L  R  C  I  V  A  M  A  C  G  F  F  Q  G  *  F  F  H  H  L  H  L  T  A  P  L  L  I  F  A  L  R  I  L  F  V  I  E  H  *  I  Y  *  K  L  G  W  V  F  *  L  A  K  W  F  *  A  *  R  V  W  P  H  L  K  L  *  F  F  P  S  C  H  L  G  L  F  G  N  K  S  D  Q  L  L  G  P  F  V  V  D  S  A  L  G  P  L  P  L  T  L  L  D  S  L  T  F  A  L  L  S  T  R  Q  S  R  L  S  L  F  E  V  K  L  S  S  F  E  L  K  L  L  L  F </second_frame>
            <third_frame>   P  R  R  L  C  M  P  *  P  L  C  F  L  S  T  L  M  S  R  L  Q  L  V  C  L  *  P  V  D  W  G  Y  L  H  T  K  S  V  I  K  L  L  L  L  L  S  R  G  N  L  Y  L  S  W  K  R  Q  P  V  P  A  *  G  V  L  L  Q  W  P  V  D  S  F  K  G  N  S  F  I  I  C  I  *  L  L  H  S  *  Y  L  L  Y  G  F  C  L  *  *  S  T  E  S  I  R  S  W  V  G  F  F  D  L  P  N  G  F  K  L  K  E  F  G  L  I  *  N  F  S  F  S  P  L  A  I  W  A  C  L  V  I  N  L  I  S  F  *  A  H  L  *  L  I  Q  H  W  A  H  S  H  *  H  Y  *  I  L  *  L  L  P  F  C  P  L  D  N  P  G  C  P  F  L  K  *  S  C  P  L  L  N  *  S  C  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146621" stop="146881"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGKGNQSLLEVYCCNGLWILSRVILSSSASDCSTPDICSTDSVCDRALNLLEAGLGFLTCQMVLSLKSLASFKTLVFPLLPFGPVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146463" stop="146690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPKALHALTIVLFVHFDVSTTVGLSITCGLGLPSYQVSDKASLIAIEGKSVSELEKATSPCLRCIVAMACGFFQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0047D08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146847" stop="147047"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPSCHLGLFGNKSDQLLGPFVVDSALGPLPLTLLDSLTFALLSTRQSRLSLFEVKLSSFELKLLLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 177 chains have been computed
$ 
$ memory statistics:
$ 68632 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2984 bytes was the average size of a spliced alignment
$ 14896 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1862 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 217 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:27:33
-->
