<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:25:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225197" ref_strand="+" ref_description="SGN-E225197 [cLEL-17-L18](-)">
      <seq>acaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattgaagaaataggcattacatgacacaagggcaaattagtcattactgtttaatcaagttggttaaagttgttaagtgtagttagttagaaatttgttaggaagttagttagtaaaacagtatatgtactgcatcaagttacaatacaatgtattcagtttgtattcttcttttttacaaaataaacttcttctctcttttccttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="733" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="433" g_stop="1" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E225197" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="433" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTTCTTGTTGAAGCTT</genome_strand>
        <mrna_strand>ACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700553" ref_strand="+" ref_description="SGN-E700553 [FA13BG11]">
      <seq>agagagagaagagggagaaacccttcccccctctccaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctcagacagcctacaacaacagctccaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaaaaaggtggaacaatgggaaggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="2955" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2655" g_stop="2160" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2159" i_stop="1497" i_length="663">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1496" g_stop="1492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="500" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1491" i_stop="765" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="567" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="698" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="566" i_stop="486" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="485" g_stop="267" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="919" r_length="221" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E700553" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2655" e_stop="2160"/>
          <exon e_start="1496" e_stop="1492"/>
          <exon e_start="764" e_stop="567"/>
          <exon e_start="485" e_stop="267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTG-AATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGG-AGGAAGTTT</genome_strand>
        <mrna_strand>AGAGAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTCAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAAAAGGTGGAACAATGGGAAGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708550" ref_strand="+" ref_description="SGN-E708550 [FA36AC11]">
      <seq>aactcttcccccctctccaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctgagacagcctacaacaacagctccaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="2937" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2637" g_stop="2160" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2159" i_stop="1497" i_length="663">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1496" g_stop="1492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="482" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1491" i_stop="765" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="567" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="680" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="566" i_stop="486" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="485" g_stop="294" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="872" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E708550" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2637" e_stop="2160"/>
          <exon e_start="1496" e_stop="1492"/>
          <exon e_start="764" e_stop="567"/>
          <exon e_start="485" e_stop="294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAA</genome_strand>
        <mrna_strand>AACTCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730588" ref_strand="+" ref_description="SGN-E730588 [LA24CD02]">
      <seq>cccataaaggcagaaagagaagagggagaaacccttcccccctctctaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctgagacagcctacaacaacagctctaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="2956" stop="29"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2653" g_stop="2160" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="507" r_length="494" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2159" i_stop="1497" i_length="663">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1496" g_stop="1492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="511" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1491" i_stop="765" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="567" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="709" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="566" i_stop="486" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="485" g_stop="329" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="866" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E730588" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2653" e_stop="2160"/>
          <exon e_start="1496" e_stop="1492"/>
          <exon e_start="764" e_stop="567"/>
          <exon e_start="485" e_stop="329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATG</genome_strand>
        <mrna_strand>AAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCTAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCTAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266711" ref_strand="-" ref_description="SGN-E266711 [cLEI-5-J6]">
      <seq>ttcattagtaaccatcttatcaatgaaattgattttgctacaatccatgcatacactgatcaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataagaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtacagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattctattgttttgggactaaatccttcaactacacaaattatctcaaaccaagctcatatcatgactgctttggctcattctctcaatcatgagtgaagacatcataataatcaatttataatctatcatttttagtattattaatttgagatgatattaccaaacatgttcaagttgattaaacacaagaatgtaattgaataaattgttttagtaaaaaggaaagttatgttataaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="11083" stop="9834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10783" g_stop="10719" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10135" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="568" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="590"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E266711" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266711" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10783" e_stop="10719"/>
          <exon e_start="10637" e_stop="10135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</genome_strand>
        <mrna_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747651" ref_strand="+" ref_description="SGN-E747651 [GI|54299551]">
      <seq>atgtcttatgcaagaagaagttgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtttaatcttgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttgaagaaccacattgagaaagtggttacaaggttgaatagtattactaaagttgcttacaaagatgatccgacaattatggcatgggaactcatgaatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggattttatggtgattcaattcctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattagtaatcatcttatcaatgaaattgattttgctactatccatgcatacactgaccaatgggtgtctggacaaagcgatgatgcacagttggtgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattaaagaaacctctagtgcttgctgaatttggaaagtctagtagaggtcaaggatcaagagatatatttatgagtagtgtatatagaaatgtgtacaatttggcaaaagaaggtggaacaatggcaggaagtttagtttggcaactaatggcacatggaatggagaattatgatgatggctattgcattgttttgggacaaaccccttcaactacacaaattatttctgaccaagctcatgtcatgacagctttggctcgttctttgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12102" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11802" g_stop="11482" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11194" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="513" r_length="195" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11118" g_stop="10996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="636" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10921" g_stop="10719" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="839" r_length="203" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10637" g_stop="10283" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="1191" r_length="352" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E747651" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11802" e_stop="11482"/>
          <exon e_start="11388" e_stop="11194"/>
          <exon e_start="11118" e_stop="10996"/>
          <exon e_start="10921" e_stop="10719"/>
          <exon e_start="10637" e_stop="10283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAAT</genome_strand>
        <mrna_strand>ATGTCTTAT--GCA-AGAAGAAGTTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTTTAATCTTGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGAAGAACCACATTGAG...........................................................................AAAGTGGTTACAAGGTTGAATAGTATTACTAAAGTTGCTTACAAAGATGATCCGACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAATCATCTTATCAATGAAATTGATTTTGCTACTATCCATGCATACACTGACCAATG.................................................................................GGTGTCTGGACAAAGCGATGATGCACAGTTGGTGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTAAAGAAACCTCTAGTGCTTGCTGAATTTGGAAAGTCTAGTAG---AGGTCAAGGATCAAGAGATATATTTATGAGTAGTGTATATAGAAATGTGTACAATTTGGCAAAAGAAGGTGGAACAATGGCAGGAAGTTTAGTTTGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGCTATTGCATTGTTTTGGGACAAACCCCTTCAACTACACAAATTATTTCTGACCAAGCTCATGTCATGACAGCTTTGGCTCGTTCTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266957" ref_strand="+" ref_description="SGN-E266957 [cLEI-7-H19]">
      <seq>aatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggattttatggtgattcaattcctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattagtaatcatcttatcaatgaaattgattttgctactatccatgcatacactgaccaatgggtgtctggacaaagcgatgatgcacagttggtgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattaaagaaacctctagtgcttgctgaatttggaaagtctagtagaggtcaaggatcaagagatatatttatgagtagtgtatatagaaatgtgtacaatttggcaaaagaaggtggaacaatggcaggaagtttagtttggcaactaatggcacatggaatggagaattatgatgatggctattgcattgttttgggacaaaccccttcaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="11340" stop="10038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11040" g_stop="10996" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10921" g_stop="10719" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="248" r_length="203" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10637" g_stop="10338" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="545" r_length="297" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E266957" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11040" e_stop="10996"/>
          <exon e_start="10921" e_stop="10719"/>
          <exon e_start="10637" e_stop="10338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTAC</genome_strand>
        <mrna_strand>AATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAATCATCTTATCAATGAAATTGATTTTGCTACTATCCATGCATACACTGACCAATG.................................................................................GGTGTCTGGACAAAGCGATGATGCACAGTTGGTGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTAAAGAAACCTCTAGTGCTTGCTGAATTTGGAAAGTCTAGTAG---AGGTCAAGGATCAAGAGATATATTTATGAGTAGTGTATATAGAAATGTGTACAATTTGGCAAAAGAAGGTGGAACAATGGCAGGAAGTTTAGTTTGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGCTATTGCATTGTTTTGGGACAAACCCCTTCAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265650" ref_strand="+" ref_description="SGN-E265650 [cLEI-14-P15]">
      <seq>caaacacttgttagaggttggaatggagggattttatggtgattcaattcctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattagtaatcatcttatcaatgaaattgattttgctactatccatgcatacactgaccaatgggtgtctggacaaagcgatgatgcacagttggtgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattaaagaaacctctagtgcttgctgaatttggaaagtctagtagaggtcaaggatcaagagatatatttatgagtagtgtatatagaaatgtgtacaatttggcaaaagaaggtggaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="11177" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10877" g_stop="10719" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10430" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="364" r_length="205" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E265650" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10877" e_stop="10719"/>
          <exon e_start="10637" e_stop="10430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTGTTGGAAGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATG</genome_strand>
        <mrna_strand>CAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAATCATCTTATCAATGAAATTGATTTTGCTACTATCCATGCATACACTGACCAATG.................................................................................GGTGTCTGGACAAAGCGATGATGCACAGTTGGTGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTAAAGAAACCTCTAGTGCTTGCTGAATTTGGAAAGTCTAGTAG---AGGTCAAGGATCAAGAGATATATTTATGAGTAGTGTATATAGAAATGTGTACAATTTGGCAAAAGAAGGTGGAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537981" ref_strand="+" ref_description="SGN-E537981 [TUS-56-N20]">
      <seq>ttgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtttaatcttgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttgaagaaccacattgagaaagtggttacaaggttgaatagtattactaaagttgcttacaaagatgatccgacaattatggcatgggaactcatgaatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggattttttaatgttgattcaattccctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattaataatcatcttatcaatgaaattgattttgctactatccatgcatacactgaccaatgggtgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12079" stop="266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11779" g_stop="11482" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11194" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="493" r_length="195" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11118" g_stop="10996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="616" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10921" g_stop="10719" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="823" r_length="207" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10637" g_stop="10630" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="831" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E537981" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11779" e_stop="11482"/>
          <exon e_start="11388" e_stop="11194"/>
          <exon e_start="11118" e_stop="10996"/>
          <exon e_start="10921" e_stop="10719"/>
          <exon e_start="10637" e_stop="10630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGA--TTTT-ATGGTGATTCAATT-CCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTG</genome_strand>
        <mrna_strand>TTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTTTAATCTTGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGAAGAACCACATTGAG...........................................................................AAAGTGGTTACAAGGTTGAATAGTATTACTAAAGTTGCTTACAAAGATGATCCGACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTTTAATGTTGATTCAATTCCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAATAATCATCTTATCAATGAAATTGATTTTGCTACTATCCATGCATACACTGACCAATG.................................................................................GGTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266116" ref_strand="+" ref_description="SGN-E266116 [cLEI-6-J5]">
      <seq>tgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttgaagaaccacattgagaaagtggttacaaggttgaatagtattactaaagttgcttacaaagatgatccgacaattatggcatgggaactcatgaatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggattttatggtgattcaattcctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattagtaatcatcttatcaatgaaattgattttgctactatccatgcatacactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="11636" stop="10425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11336" g_stop="11194" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11118" g_stop="10996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="266" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10921" g_stop="10724" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="464" r_length="198" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E266116" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11336" e_stop="11194"/>
          <exon e_start="11118" e_stop="10996"/>
          <exon e_start="10921" e_stop="10724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGAT</genome_strand>
        <mrna_strand>TGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGAAGAACCACATTGAG...........................................................................AAAGTGGTTACAAGGTTGAATAGTATTACTAAAGTTGCTTACAAAGATGATCCGACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAATCATCTTATCAATGAAATTGATTTTGCTACTATCCATGCATACACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537777" ref_strand="+" ref_description="SGN-E537777 [TUS-56-I21]">
      <seq>caaaatgtcttatgcaagaagaagttgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtttaatcttgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttgaagaaccacattgagaaagtggttacaaggttgaatagtattactaaagttgcttacaaagatgatccgacaattatggcatgggaactcatgaatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggatttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12106" stop="10540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11806" g_stop="11482" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11194" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="517" r_length="195" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11118" g_stop="10996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="640" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10921" g_stop="10840" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="723" r_length="83" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E537777" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11806" e_stop="11482"/>
          <exon e_start="11388" e_stop="11194"/>
          <exon e_start="11118" e_stop="10996"/>
          <exon e_start="10921" e_stop="10840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGA-TTTTATG</genome_strand>
        <mrna_strand>CAAAATGTCTTAT--GCA-AGAAGAAGTTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTTTAATCTTGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGAAGAACCACATTGAG...........................................................................AAAGTGGTTACAAGGTTGAATAGTATTACTAAAGTTGCTTACAAAGATGATCCGACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265281" ref_strand="+" ref_description="SGN-E265281 [cLEI-9-I6]">
      <seq>gtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtgtttatgatgaacgtgtttttcacggtttggattttgtgatcgccgaagctaagaaatatggtgttcgcttactattgatctttgtaaatcaatggaatgatttcggaggaaaagctgaatatgtgtggtgggcgcgaaatgcaagagttcagattaataatgacgaggaattctatactcatcctatactcaaaaaatacttgaagaatcacattgagaaagttggtacaaggttgcatagtctcactcaagttgcttacaaagacgatgcatcacttatcgcatggtaactcatgaatgagcctcgccatcaagctgactattcatgaaaaactgttaatggctgggttcacgaaatggctagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="11858" stop="10695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11558" g_stop="11482" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11194" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="272" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11118" g_stop="10996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="395" r_length="123" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10921" g_stop="10895" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="422" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E265281" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11558" e_stop="11482"/>
          <exon e_start="11388" e_stop="11194"/>
          <exon e_start="11118" e_stop="10996"/>
          <exon e_start="10921" e_stop="10895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAATGTAAGTTTGAAATTCAAGTTTAATTTTAAAAATATCAAATCTATAATTGACGTTTTTGATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTT</genome_strand>
        <mrna_strand>GTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAC.............................................................................................GGTTTGGATTTTGTGATCGCCGAAGCTAAGAAATATGGTGTTCGCTTACTATTGATCTTTGTAAATCAATGGAATGATTTCGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAAGAGTTCAGATTAATAATGACGAGGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAG...........................................................................AAAGTTGGTACAAGGTTGCATAGTCTCACTCAAGTTGCTTACAAAGACGATGCATCACTTATCGCATGGTAACTCATGAATGAGCCTCGCCATCAAGCTGACTATTCATGAAAAACTGTTAAT..........................................................................GGCTGGGTTCACGAAATGGCTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265734" ref_strand="+" ref_description="SGN-E265734 [cLEI-11-E12]">
      <seq>tcttatgcaagaagaagttgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtttaatcttgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttgaagaaccacattgagaaagtggttacaaggttgaatagtattactaaagttgcttacaaagatgatccgacaattatggcatgggaactcatgaatgagcctcgcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12099" stop="10725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11799" g_stop="11482" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11194" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="510" r_length="195" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11118" g_stop="11025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="604" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E265734" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11799" e_stop="11482"/>
          <exon e_start="11388" e_stop="11194"/>
          <exon e_start="11118" e_stop="11025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAGGTACATATGGGGTAGTTATTATTTAATACATATAAACAACTTTTTTTTATAATTAATATTATGAAATTATTACAGAAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATC</genome_strand>
        <mrna_strand>TCTTAT--GCA-AGAAGAAGTTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTTTAATCTTGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGAAGAACCACATTGAG...........................................................................AAAGTGGTTACAAGGTTGAATAGTATTACTAAAGTTGCTTACAAAGATGATCCGACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266294" ref_strand="+" ref_description="SGN-E266294 [cLEI-3-B18]">
      <seq>tgtcttatacacatagaagaagttgtatttctgggctctttctcttgttgttagctctttcttgtgaagcgaattcggggtttataggagttaaagattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctgctgaaaggtacaaagtcactgaggttcttaaagatgcttctaccgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtgtttatgatgaacgtgtttttcagggtttggattttgtgatcgcggaagctaagaaatatggtgttcgtttaatattgagctttgtaaatcaatggaatgattttggaggaaaagctgaatatgtgtggtgggcgcgaaatgccagagttcagattagtaatgacgatgaattctatactcatcctatactcaaaaaatacttgaagaatcacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12101" stop="10896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11801" g_stop="11482" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11196" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="513" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E266294" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11801" e_stop="11482"/>
          <exon e_start="11388" e_stop="11196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTG</genome_strand>
        <mrna_strand>TGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCCAGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267681" ref_strand="+" ref_description="SGN-E267681 [cLEI-12-A4]">
      <seq>tgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtttaatcttgagctttgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcaggagctcagattagtaatgacgatgaattctatactcatcctatgctcaaaaaatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12078" stop="10908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11778" g_stop="11482" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11208" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="478" r_length="181" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E267681" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11778" e_stop="11482"/>
          <exon e_start="11388" e_stop="11208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGA</genome_strand>
        <mrna_strand>TGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTTTAATCTTGAGCTTTGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCAGGAGCTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATGCTCAAAAAATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266839" ref_strand="+" ref_description="SGN-E266839 [cLEI-7-P3]">
      <seq>aaaatgtcttatgcaagaagaagttgcatttgtgggctctttctcttgttcctagctcttgcttgtgaagcaaattcggggtttattggagttaaggattctcattctgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttgtgttgctggtctttctgtttgtcgtacttgggctttaagagatggaggtgatagagcattacaaatatcacctgctatttatgatgaacgtgtttgtcagggattggattttgtaatcgctgaagctaacaaatatggtattcctttaatcttgacctatgtgaatcaatggaacgactttggaggaaaagctcaatatgtttggtgggcacgaaatgcacgagctcagattagtaatgacgatgaattctatgctcatcctatgctcaaaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12105" stop="10912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11805" g_stop="11482" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11212" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="498" r_length="177" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E266839" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11805" e_stop="11482"/>
          <exon e_start="11388" e_stop="11212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATAC</genome_strand>
        <mrna_strand>AAAATGTCTTAT--GCA-AGAAGAAGTTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGCTTGTGAAGCAAATTCGGGGTTTATTGGAGTTAAGGATTCTCATTCTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTGTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTAAGAGATGGAGGTGATAGAGCATTACAAATATCACCTGCTATTTATGATGAACGTGTTTGTCAG.............................................................................................GGATTGGATTTTGTAATCGCTGAAGCTAACAAATATGGTATTCCTTTAATCTTGACCTATGTGAATCAATGGAACGACTTTGGAGGAAAAGCTCAATATGTTTGGTGGGCACGAAATGCACGAGCTCAGATTAGTAATGACGATGAATTCTATGCTCATCCTATGCTCAAAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268109" ref_strand="+" ref_description="SGN-E268109 [cLEI-15-K11]">
      <seq>gtcttatgcaagaagaagttgcatttgtgggctctttctcttgttcctagctcttgtttgtgaagcaaattcggggtttataggagttaaggattctcattttgaactcaatggatctccttttctattcaatggtttcaactcatattggttgatgcatgttgctgctgaccctactgagaggtacaaagtcactgaagttcttaaagatgcttctgttgctggtctttctgtttgtcgtacttgggcttttagtgatggaggtgatagagcattacaaatatcacctggtatttatgatgaacgtgtttttcagggtttggattttgtaatcgcggaagctaagaaatatggtattcgtctaatcttgagctttgtgaatcaatggaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="12100" stop="11012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11800" g_stop="11482" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11388" g_stop="11311" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="394" r_length="78" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E268109" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11800" e_stop="11482"/>
          <exon e_start="11388" e_stop="11311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAGGTAAAGGACATTTGTTGTTATAGTATCAATGATTTTTTTTTTGCATTGTCGCATTTCAATGCATGTGAGTCCCTTACTTGTTTCTAAATTTAGGGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGAT</genome_strand>
        <mrna_strand>GTCTTAT--GCA-AGAAGAAGTTGCATTTGTGGGCTCTTTCTCTTGTTCCTAGCTCTTGTTTGTGAAGCAAATTCGGGGTTTATAGGAGTTAAGGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTACTGAGAGGTACAAAGTCACTGAAGTTCTTAAAGATGCTTCTGTTGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTATTTATGATGAACGTGTTTTTCAG.............................................................................................GGTTTGGATTTTGTAATCGCGGAAGCTAAGAAATATGGTATTCGTCTAATCTTGAGCTTTGTGAATCAATGGAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542660" ref_strand="+" ref_description="SGN-E542660 [TUS-64-B6](-)">
      <seq>ttgggaagagaagcaattttccaagcaattcatggaggatcataacactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatgatgaagaacagcgcaggcaagaactgatgcgagagcgtgagaagcacaagcaagaacaggtggaaacattgaagcgcgagatgcagagtggaatggcgcaagcaatgaaagaacaagctcaattaagagaagagatggcttatcaatacaagcttggtaactttgaggctgcagctgctattcaaagacgtttggaccctgatctccctatgtagacgaggttctgcaaaattttggtctacgctacaacggattacattagactacatgttttagtttttctgtctccttttcgttgagtaaatatgcttgcagattcatctgcaagtctaagcttattactagatatcactaggctagatgagttgaaatctagttcatgtattgttgtgtaatatcatttgcactcccatctttttattctcttcgatctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="18570" stop="16262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18270" g_stop="18244" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18243" i_stop="18123" i_length="121">
            <donor d_prob="0.495" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18122" g_stop="18081" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="69" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18080" i_stop="17844" i_length="237">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17843" g_stop="17730" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="183" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17729" i_stop="17156" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17155" g_stop="17077" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="262" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17076" i_stop="16977" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16976" g_stop="16905" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="334" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16904" i_stop="16831" i_length="74">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16830" g_stop="16562" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="603" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="620"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E542660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18270" e_stop="18244"/>
          <exon e_start="18122" e_stop="18081"/>
          <exon e_start="17843" e_stop="17730"/>
          <exon e_start="17155" e_stop="17077"/>
          <exon e_start="16976" e_stop="16905"/>
          <exon e_start="16830" e_stop="16562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAGGTAAGTCATGGACACGGTTGCCATTTCATTTGATAAATCGTTTTTTGGTTGAGTAGTATGAAGTCAGCTAAGGGCATGACACAAATTCAAATACTGTTAGAGAACCAAGTTTGGACTTTTGGTTTTTAAATCTAGAAGGATACACCTATTATCCACTGAATTTACGTTTCAAAGCTGGAACATCGGATTTCTTATTTCTTATTTAGAGGAAATAACTTTGAAGTTTCAAATTTCTAATGTGATCTCGTGCTCTTTGGAGCTATTTGAACAGAGCCACTATCCTGCAGTGGTGGTATAGATTATTGCTTTGCCCTAGTTTAATCTTTCAGACCTGAAACCACATTATAATACTCAAAGATGGTGGTATGTATAAAATTTTAGCATCCTGGAAGCTATAGGATCCCACATTAAGCAAGTACTATATAGTTAAACATACAAGAGTATTTTTTTTTTCCTGAAGACAAATCGGCTCCAACTTTTGTCATTGAAAGGGAAAAAAGGGGAGGAGATTTTCATCTTTCCATTAAATTGGCATAGTCTGGTTTTTGAGTCGTTACGTATTCTGTTATTGTAGGCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATGGTATGTATTCTGCTACCTTTGTCCTTTCTCCATACAACAGGTGAAAAGTATATAATGTGACGAACTCCTCTCTTTTTGTTTGTAAATTTGAATCTCTAAGGCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAGGTGAGAATGAGCCTTATCATGATACACTATTTTCTTTTTCCGCTCATTGATCTTATTTTCCGATGTCCTGATAGGCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</genome_strand>
        <mrna_strand>TTGGGAAGAGAAGCAATTTTCCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG....................................................................................................GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG..........................................................................GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542661" ref_strand="+" ref_description="SGN-E542661 [TUS-64-B6]">
      <seq>gagcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaggtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="20332" stop="17446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20032" g_stop="19704" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19703" i_stop="19636" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19635" g_stop="19536" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="429" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19535" i_stop="18586" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18585" g_stop="18540" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="475" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18539" i_stop="18294" i_length="246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18293" g_stop="18244" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="525" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18243" i_stop="18123" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18122" g_stop="18081" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="566" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18080" i_stop="17844" i_length="237">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17843" g_stop="17746" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E542661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20032" e_stop="19704"/>
          <exon e_start="19635" e_stop="19536"/>
          <exon e_start="18585" e_stop="18540"/>
          <exon e_start="18293" e_stop="18244"/>
          <exon e_start="18122" e_stop="18081"/>
          <exon e_start="17843" e_stop="17746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATG</genome_strand>
        <mrna_strand>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCT-AAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301621" ref_strand="+" ref_description="SGN-E301621 [cLEW-23-G5]">
      <seq>agcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaagtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="20331" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20031" g_stop="19704" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19703" i_stop="19636" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19635" g_stop="19536" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="428" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19535" i_stop="18586" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18585" g_stop="18540" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="474" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18539" i_stop="18294" i_length="246">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18293" g_stop="18244" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="524" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18243" i_stop="18123" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18122" g_stop="18081" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18080" i_stop="17844" i_length="237">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17843" g_stop="17815" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="595" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E301621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20031" e_stop="19704"/>
          <exon e_start="19635" e_stop="19536"/>
          <exon e_start="18585" e_stop="18540"/>
          <exon e_start="18293" e_stop="18244"/>
          <exon e_start="18122" e_stop="18081"/>
          <exon e_start="17843" e_stop="17815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGAC</genome_strand>
        <mrna_strand>AGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAA......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227571" ref_strand="+" ref_description="SGN-E227571 [cLEL-30-M4](-)">
      <seq>cagggcgaaagagcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagagccgagataggaagagaagagaggnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="20341" stop="19394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20042" g_stop="19696" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E227571" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20042" e_stop="19696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGA</genome_strand>
        <mrna_strand>CAGGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGCCGAGATAGGAAGAGAAGAGAGGNAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229886" ref_strand="+" ref_description="SGN-E229886 [cLEL-33-G5](-)">
      <seq>ggcaccaggtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagaccggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="20329" stop="19394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20034" g_stop="19697" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E229886" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20034" e_stop="19697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAG</genome_strand>
        <mrna_strand>GGCACCAGGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGACCGGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379864" ref_strand="+" ref_description="SGN-E379864 [TUS-1-C21](-)">
      <seq>atatcatcattagagtctgaacccaagaaggatcaggcagatgtagacatacctcataggcctcgagctattaggacgatgacaccgcataattcagactctccaatctctcgcttacatcagagacttcgtcaaacttctgtctaccctccacgaccctccacatttcaacatcaccggcaatatctcccccaagcctttggtaactacgcagctttggctccatctagctttgggagcacagcaatgaccagtttgttcagcccagtggttggtgtgtttggagaactgttttcttcaagactgtttggaatcgcttatcctcatcctagatcttatctcatccgaggacgcagtggtcttagaatgagaagggaagaaatgcagatggacaaatttctcaacagattgttcatctttcttttctgctgctctatcttgtgcctactcctgttttgaggttcatataatgtttatcttcatcatatatttgtataaatatgtggttgtgcttacaacaatcaggtaatagttcatagtagacaaatatagactagtaagagatttagtagaaatatagctttatacaccatgctaatgttgcttcatttcctgaaccttgtgcctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="22991" stop="21760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22691" g_stop="22060" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E379864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22691" e_stop="22060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATCATTAGAGTCTGAACCCAAGAAGGATCAGGCAGATGTAGACATACCTCATAGGCCTCGAGCTATTAGGACGATGACACCGCATAATTCAGACTCTCCAATCTCTCGCTTACATCAGAGACTTCGTCAAACTTCTGTCTACCCTCCACGACCCTCCACATTTCAACATCACCGGCAATATCTCCCCCAAGCCTTTGGTAACTACGCAGCTTTGGCTCCATCTAGCTTTGGGAGCACAGCAATGACCAGTTTGTTCAGCCCAGTGGTTGGTGTGTTTGGAGAACTGTTTTCTTCAAGACTGTTTGGAATCGCTTATCCTCATCCTAGATCTTATCTCATCCGAGGACGCAGTGGTCTTAGAATGAGAAGGGAAGAAATGCAGATGGACAAATTTCTCAACAGATTGTTCATCTTTCTTTTCTGCTGCTCTATCTTGTGCCTACTCCTGTTTTGAGGTTCATATAATGTTTATCTTCATCATATATTTGTATAAATATGTGGTTGTGCTTACAACAATCAGGTAATAGTTCATAGTAGACAAATATAGACTAGTAAGAGATTTAGTAGAAATATAGCTTTATACACCATGCTAATGTTGCTTCATTTCCTTATCCTTGTGCCTCTTTT</genome_strand>
        <mrna_strand>ATATCATCATTAGAGTCTGAACCCAAGAAGGATCAGGCAGATGTAGACATACCTCATAGGCCTCGAGCTATTAGGACGATGACACCGCATAATTCAGACTCTCCAATCTCTCGCTTACATCAGAGACTTCGTCAAACTTCTGTCTACCCTCCACGACCCTCCACATTTCAACATCACCGGCAATATCTCCCCCAAGCCTTTGGTAACTACGCAGCTTTGGCTCCATCTAGCTTTGGGAGCACAGCAATGACCAGTTTGTTCAGCCCAGTGGTTGGTGTGTTTGGAGAACTGTTTTCTTCAAGACTGTTTGGAATCGCTTATCCTCATCCTAGATCTTATCTCATCCGAGGACGCAGTGGTCTTAGAATGAGAAGGGAAGAAATGCAGATGGACAAATTTCTCAACAGATTGTTCATCTTTCTTTTCTGCTGCTCTATCTTGTGCCTACTCCTGTTTTGAGGTTCATATAATGTTTATCTTCATCATATATTTGTATAAATATGTGGTTGTGCTTACAACAATCAGGTAATAGTTCATAGTAGACAAATATAGACTAGTAAGAGATTTAGTAGAAATATAGCTTTATACACCATGCTAATGTTGCTTCATTTCCTGAACCTTGTGCCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379903" ref_strand="+" ref_description="SGN-E379903 [TUS-1-C21]">
      <seq>tggaaaaaaatgatatggagaatatgactgggaatacatgtcaattattttatacaaacaagttctccaaatccatggatcctaatggatgtttgagtgttttaacccaattaataatccaggtttatatattcaattttggaaagcaatcataaattatttctctttttcataacttgaactactatattttttcaacaaatggtttcgagataggccagactcaagctagtaaaatgaaactttgtagggcattgttttagtgcttgattaaagaggtgtttaaattgacatgattttgtatccaatccatactaattgctttcatactctcactcccatttgattcttaaacagaaagaaggagaaaacaatgagccgcttttctgattaatccgcgaagaccaaactaattatcactcatcaaaagtttgttagtcccatttgtgcatttcacgtagtttgcttgctcatacacatatgtttgatttctatagtgcattttgtgattgtgaggtccgtgattatttgtgaatttcatctttaatagatttcatgactatcacccgcgttgggtctgatgaagatatttccgttgataagaaaaactcagttccatttccaacatcagcctctgataatgaatcttcctgttttgattgcaacatttgccttgactcagcacatgatcctgtagtcaccctctgcggtcacctctactgctggccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="23840" stop="22509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23540" g_stop="22809" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E379903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23540" e_stop="22809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</genome_strand>
        <mrna_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201292" ref_strand="+" ref_description="SGN-E201292 [cLEC-4-A5]">
      <seq>tggaaaaaaatgatatggagaatatgactgggaatacatgtcaattattttatacaaacaagttctccaaatccatggatcctaatggatgtttgagtgttttaacccaattaataatccaggtttatatattcaattttggaaagcaatcataaattatttctctttttcataacttgaactactatattttttcaacaaatggtttcgagataggccagactcaagctagttaaatgaaactttgtagggcattgttttagtgcttgattaaagaggtgtttaaattgacatgattttgtatccaatccatactaattgctttcatactctcactcccatttgattcttaaacagaaagaaggagaaaacaatgagccgcttttctgattaatccgcgaagaccaaactaattatcactcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="23840" stop="22815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23540" g_stop="23115" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E201292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23540" e_stop="23115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCA</genome_strand>
        <mrna_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTTAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349577" ref_strand="+" ref_description="SGN-E349577 [cTOS-1-J19]">
      <seq>ttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattatgtttgcttcaatgtttctgaagttcaaatttcactggtaaaattgtctctatattggcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="26628" stop="25556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26328" g_stop="25847" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E349577" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26328" e_stop="25847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCATTTCACCAT</genome_strand>
        <mrna_strand>TTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294998" ref_strand="+" ref_description="SGN-E294998 [cLET-17-L4]">
      <seq>ctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattatgtttgcttcaatgtttctgaagttcaaatttcactggtaaaattgtctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="26586" stop="25565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26286" g_stop="25868" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="433"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E294998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26286" e_stop="25868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</genome_strand>
        <mrna_strand>CTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734934" ref_strand="+" ref_description="SGN-E734934 [LB13DH12]">
      <seq>cacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccctcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28594" stop="25619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28294" g_stop="28048" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25917" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="692" r_length="445" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E734934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28294" e_stop="28048"/>
          <exon e_start="26361" e_stop="25917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATG</genome_strand>
        <mrna_strand>CACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCCTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346687" ref_strand="+" ref_description="SGN-E346687 [cTOF-28-K14]">
      <seq>acacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggaattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctctttatatttcccttcttttgccttttgcactgcaagactataacttgataatctgagattcgctgtataggntgggtatatgctatgtttcttctttggcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28595" stop="25618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28295" g_stop="28048" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25918" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="689" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E346687" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28295" e_stop="28048"/>
          <exon e_start="26361" e_stop="25918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGG-ATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTAT</genome_strand>
        <mrna_strand>ACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGAATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTC-TTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAG-ACTATAACTTGAT-AATCTGAGATTCG-CTGTATAGGNTGGGTATATGCTATGTTTCTTCTTTGGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398711" ref_strand="+" ref_description="SGN-E398711 [TUS-45-D3](-)">
      <seq>tgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatccctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtttaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28481" stop="25622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28181" g_stop="28048" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25923" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="574" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="591"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E398711" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28181" e_stop="28048"/>
          <exon e_start="26361" e_stop="25923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTAT-CCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTC</genome_strand>
        <mrna_strand>TGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTTTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711473" ref_strand="+" ref_description="SGN-E711473 [FB02AD10]">
      <seq>cgagccataaagcccaatcaaattctactcagccacacaaatttatcccccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccctcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28625" stop="25624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28329" g_stop="28048" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25924" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="720" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E711473" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28329" e_stop="28048"/>
          <exon e_start="26361" e_stop="25924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAAAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGT</genome_strand>
        <mrna_strand>CGAGCCATAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCCCCCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCCTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541302" ref_strand="+" ref_description="SGN-E541302 [TUS-62-A9]">
      <seq>ttctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaannnnnnnnnnnnnnnnn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28607" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28307" g_stop="28048" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25925" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="697" r_length="437" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E541302" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28307" e_stop="28048"/>
          <exon e_start="26361" e_stop="25925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTG</genome_strand>
        <mrna_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTAAAANNNNNNNNNNNNNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280259" ref_strand="+" ref_description="SGN-E280259 [cLER-1-A9](-)">
      <seq>gtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28514" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28214" g_stop="28048" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25936" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="593" r_length="426" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E280259" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28214" e_stop="28048"/>
          <exon e_start="26361" e_stop="25936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATG</genome_strand>
        <mrna_strand>GTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541299" ref_strand="+" ref_description="SGN-E541299 [TUS-62-A9](-)">
      <seq>ttctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28607" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28307" g_stop="28048" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="25946" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="676" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="697"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E541299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28307" e_stop="28048"/>
          <exon e_start="26361" e_stop="25946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTT</genome_strand>
        <mrna_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239105" ref_strand="+" ref_description="SGN-E239105 [cLEL-9-P12](-)">
      <seq>ccccagttctggttgaattttgggctccatggtgtggtccatgcagaatgattctcccggttattaatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataccttgataaatctgagattcgtctgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="26608" stop="25654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26310" g_stop="25954" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="372"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E239105" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26310" e_stop="25954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATA</genome_strand>
        <mrna_strand>CCCCAGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCTCCCGGTTATTAATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATACCTTGATAAATCTGAGATTCGTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292457" ref_strand="+" ref_description="SGN-E292457 [cLET-1-P16]">
      <seq>tcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgatcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcacgatactgctgttctagtgcctggggttaatgatcaatcatgggagactcttgtgatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggctggagagaagaaagatacaggcgttggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtggaatggtacatatgtagagctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28505" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28205" g_stop="28048" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26024" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="496" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E292457" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28205" e_stop="28048"/>
          <exon e_start="26361" e_stop="26024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTT</genome_strand>
        <mrna_strand>TCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGATCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCACGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGGGTTAATGATCAATCATGGGAGACTCTTGTGATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGCTGGAGAGAAGAAAGATACAGGCGTTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTGGAATGGTACATATGTAGAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291664" ref_strand="+" ref_description="SGN-E291664 [cLET-6-G21]">
      <seq>caaattctactcagccacactaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattntcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28611" stop="25782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28311" g_stop="28048" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26082" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="544" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E291664" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28311" e_stop="28048"/>
          <exon e_start="26361" e_stop="26082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</genome_strand>
        <mrna_strand>CAAATTCTACTCAGCCACACTAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTNTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280258" ref_strand="+" ref_description="SGN-E280258 [cLER-1-A9]">
      <seq>tgctggaaactatcgcagttcctcgggccgtcgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28563" stop="25782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28263" g_stop="28048" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26082" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="496" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E280258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28263" e_stop="28048"/>
          <exon e_start="26361" e_stop="26082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</genome_strand>
        <mrna_strand>TGCTGGAAACTATCGCAGTTCCTCGGGCCGTCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282652" ref_strand="+" ref_description="SGN-E282652 [cLER-15-G18]">
      <seq>caaattctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaagatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28611" stop="25924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28311" g_stop="28048" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26224" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="402" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E282652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28311" e_stop="28048"/>
          <exon e_start="26361" e_stop="26224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTG</genome_strand>
        <mrna_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAAGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294801" ref_strand="+" ref_description="SGN-E294801 [cLET-17-P7]">
      <seq>cacgtgctatggctggtttgctggaaactatcgcagttcctggggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccgggcttctgttaaattctctctattcaatgggcttaagatccaggcgactcgttcatcaatatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgcgaggctcacgatactgctgttctagtgcctggtgttaatgatcaatcatgggagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28579" stop="26029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28281" g_stop="28048" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26329" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="267" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E294801" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28281" e_stop="28048"/>
          <exon e_start="26361" e_stop="26329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTC</genome_strand>
        <mrna_strand>CACGTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTGGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGGCTTCTGTTAAATTCTCTCTATTCAATGGGCTTAAGATCCAGGCGACTCGTTCATCAATATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGCGAGGCTCACGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293019" ref_strand="+" ref_description="SGN-E293019 [cLET-12-H4]">
      <seq>gccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaagatactgctgttctagtgcctggtgttaatgatcaatcatgggagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28517" stop="26029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28217" g_stop="28048" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26329" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="203" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E293019" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28217" e_stop="28048"/>
          <exon e_start="26361" e_stop="26329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTC</genome_strand>
        <mrna_strand>GCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAAGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397330" ref_strand="+" ref_description="SGN-E397330 [TUS-45-D3]">
      <seq>tcaaattctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="28612" stop="26037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28312" g_stop="28048" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="290" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E397330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28312" e_stop="28048"/>
          <exon e_start="26361" e_stop="26337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATG</genome_strand>
        <mrna_strand>TCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243236" ref_strand="+" ref_description="SGN-E243236 [cLEE-2-M6]">
      <seq>ttccatacaagggctaatattgaacgctaagccctatttcaatgagcctggatatgccaggatgaatggctcagcctcaggggaacgaaactcactgcgctataacgagaacacttgcatttttaatctcaagacaatggtctattgtatgaggcgaccaccacagcactttgaggattttgtcatagggcattactttcaaagctgtcaagatattcttgtggcatgtaaagcatatatggaaggtgctcgtgtgggtagccttgtcagagggtgtgttctcggcgatggtggcaagggtggtgacaaaggtggttctcggagtttcaaggccatgttggcgggattcatcggggtacttgtagaggcgttcaaaaagattggttgcgaggattgtgataagtttcttcccttggcagaaaaagcgtcaaccagagcaactccagttaagatagactgatagagactgctgaccatatgtagatttcagtactgttatacacctaatgttgacaaactagttttcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="32909" stop="31413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32609" g_stop="32444" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32443" i_stop="32077" i_length="367">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32076" g_stop="31713" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="530" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E243236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32609" e_stop="32444"/>
          <exon e_start="32076" e_stop="31713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAGGTATATCGTTTATGACCATCAATAACTTAATGAACTTTTCAATTATGCCTTGCGATGTTTTTTCCATGCGATTTATCTGTTGGAACAGTAAAATTACAAAACTAAATTCTAACGTCTCATTAAGTAACTGAACCTTTAACATTGTAACAACAAAGTGACTAAACTTTCCTCCCTTGTAACAACAACAAAGTCATGACTATTTTGTCGATAGAGATGCAGAATTTCACCATTATAACAGTCTAGTCACAAGACTTTTCCTTATAACAACAAAACTTACTCGTCTAGGTGACTTTATTGTAATAGTTGTGTGACTTTTTCGTTCTAAATTAAGTACTACGAATTTGAACATTCTGCTTTTTTGCTGCAGCACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</genome_strand>
        <mrna_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG...............................................................................................................................................................................................................................................................................................................................................................................CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330995" ref_strand="+" ref_description="SGN-E330995 [cTOD-10-L18]">
      <seq>cagggtttatgcttgcaacaggtgatatgatctctcttccactagaacaggttcatccagggtatattatcccaccagatactatgaactattttcttccagaactgctttctacggggcctgttcttgcaccaggtgctatgcactatttccatcaggaaatggatcatgaactctggactcatggtccgcataacagtgcaagtctatcactccaatgcgaatcagctcctagtaaggaacaacatggaaatttaggtgaaagcctgaagaatttccgtcttttcaagaaatttgatactgttcaagatcattcaggccattacttttctggacttgcatctcatgacaacctggcctctaagagttgtgccaagaggatactggaggagtggaagatactggagaaagatttacctgataccatatttgtccgagtgtatgaaacaaggatggatctgttgagagcagtgattattggagctgatggaactccttaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="34044" stop="32656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33744" g_stop="33389" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33388" i_stop="33310" i_length="79">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33309" g_stop="33246" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="420" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33245" i_stop="33040" i_length="206">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33039" g_stop="32956" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="504" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E330995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33744" e_stop="33389"/>
          <exon e_start="33309" e_stop="33246"/>
          <exon e_start="33039" e_stop="32956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTGGTTAGTTTAACTGTAAGTGGTTGATAGTTTTGATTAGTCATTCATTATCTTATTTCTAAATGTTTGTTTTTCTGTATAGGCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTGGTAACATGAGCAAATTTTCCAGTCTTTCTTAGCATTCCTACCTGATCTGTGATGATTATCTTGGCATCAAGTTATTGAAATTTGGCATACATGCTTACAGGATTTGTTTAAGTAATGAATTTCTGAGGAGCTCATAATGTGATCTGTGATAAAAATCTGCTTGTCGTATTTCATATAACCACAACTGAATGCCTTTTCATGAGCAGATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</genome_strand>
        <mrna_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG...............................................................................GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG..............................................................................................................................................................................................................ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="44294" stop="43269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43994" g_stop="43569" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43994" e_stop="43569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGACACGTCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCT</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="44295" stop="43398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43995" g_stop="43672" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43995" e_stop="43672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="44295" stop="43398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43995" g_stop="43689" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43995" e_stop="43689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="44295" stop="43543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43995" g_stop="43843" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43995" e_stop="43843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228479" ref_strand="+" ref_description="SGN-E228479 [cLED-3-H3]">
      <seq>acttgctctcctacataaccaaaaactctatttcatcccccttcacttcaatctcctaaaaaatgtcggacaagcgtggtagttacaattatgctgacattaacaaatgtgtgaagaaggaaaaccaatatgatatggccttcatcgacaagaggtaatttggcgatttttagtaatattttatgtatctttttaaaaaaatacttgcgaattaacacccaaaatattaattgatttttgatactcgtatttcaatcatgcaaaatagtattttttttttcattaaaattttccactagaaaaaatagttatatgagaatatttttcatcgtctgctttcctaaaaatctcgaaaatgaatgaaaaaaatcatatcttatagaataattgttcattcattcttggtgaaaaaaactttatgcctagtagattaaaacaaaggcagagcaaaatagattactaattcccattaaaaattttggtgcatgtgttgtctttttgtctttcttgctataattagagtcgtcaatatgggttaggtctgttggatcggtctgacctaattctgtattgaatagggctgagctacgatttttggaacccattttagaaaagaattttttagttcgtcctgaataaacctgctgatttgggagcttgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="48668" stop="50587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48968" g_stop="49079" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49080" i_stop="49735" i_length="656">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49736" g_stop="50287" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="664" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E228479" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48968" e_stop="49079"/>
          <exon e_start="49736" e_stop="50287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTCTCCTACATAACCAAAAACTCTATTTCATCCCCCTTCACTTCAATCTCCTAAAAAATGTCGGACAAGCGTGGTAGTTACAATTATGCTGACATTAACAAATGTGTGTAAGTAATTATCGATCTTTAAATTTATATAACGTAATTTAACCGAGCACACATAATTTAACAAAAAAAAAAAAGAGTACTACTTTTTAACCTTGTGATTGATTTAATTCGCTTCCAATATTAATTAAGTTTAGATGTATAATCATGTCAAAGGAAAAAAGTGCCTTTCCACTTTCGAAATAGATAGAAGTGGATTTAATATTTTATATTGATTGGTCATGTGAGACATTGTTACAATTAAAATGTAAAGCTAGCAAAATAAATTTTGGAAAATCACAAATAAGAAGCAAAATTATCAGAATTATTATATAAAAAGAAATATAATTATTTAACATGATTCGAACAATAATTGCTCTAATCTACAAATAGATATGGATTAAAGTTATTAAAAAACAAGTAAAAATAACGTAAAAAAAATAGCCTCATTTTATTTACTCAGAATAAAATGATATACACAAAAAATAACGTAAATTTTGTATATATCTCACAAATATAGCTATAACATCCACTAATTCTTTTATCATAATTTATGTGAATTTCTATTAATAAGTATTTTGATATTTTTTTTTTACCTTTTAGAACCTTTTAGTATATATAGTTCAAATAAAAAATAATGTATATTAATGTAAAGTAATTTGTTAATGTAAATATTTCAGGAAGAAGGAAAACCAATATGATATGGCCTTCATCGACAAGAGGTAATTTGGCGATTTTTAGTAATATTTTATGTATCTTTTTAAAAAAATACTTGCGAATTAACACCCAAAATATTAATTGATTTTTGATACTCGTATTTCAATCATGCAAAATAGTATTTTTTTTTTCATTAAAATTTTCCACTAGAAAAAATAGTTATATGAGAATATTTTTCATCGTCTGCTTTCCTAAAAATCTCGAAAATGAATGAAAAAAATCATATCTTATAGAATAATTGTTCATTCATTCTTGGTGAAAAAAACTTTATGCCTAGTAGATTAAAACAAAGGCAGAGCAAAATAGATTACTAATTCCCATTAAAAATTTTGGTGCATGTGTTGTCTTTTTGTCTTTCTTGCTATAATTAGAGTCGTCAATATGGGTTAGGTCTGTTGGATCGGTCTGACCTAATTCTGTATTGCATAGGGCTGAGCTACGATTTTTGGAACCCATTTTAGAAAAGAATTTTTTAGTTCGTCCTGAATAAACCTGCTGATTTGGGAGCTTGAGAA</genome_strand>
        <mrna_strand>ACTTGCTCTCCTACATAACCAAAAACTCTATTTCATCCCCCTTCACTTCAATCTCCTAAAAAATGTCGGACAAGCGTGGTAGTTACAATTATGCTGACATTAACAAATGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAAAACCAATATGATATGGCCTTCATCGACAAGAGGTAATTTGGCGATTTTTAGTAATATTTTATGTATCTTTTTAAAAAAATACTTGCGAATTAACACCCAAAATATTAATTGATTTTTGATACTCGTATTTCAATCATGCAAAATAGTATTTTTTTTTTCATTAAAATTTTCCACTAGAAAAAATAGTTATATGAGAATATTTTTCATCGTCTGCTTTCCTAAAAATCTCGAAAATGAATGAAAAAAATCATATCTTATAGAATAATTGTTCATTCATTCTTGGTGAAAAAAACTTTATGCCTAGTAGATTAAAACAAAGGCAGAGCAAAATAGATTACTAATTCCCATTAAAAATTTTGGTGCATGTGTTGTCTTTTTGTCTTTCTTGCTATAATTAGAGTCGTCAATATGGGTTAGGTCTGTTGGATCGGTCTGACCTAATTCTGTATTGAATAGGGCTGAGCTACGATTTTTGGAACCCATTTTAGAAAAGAATTTTTTAGTTCGTCCTGAATAAACCTGCTGATTTGGGAGCTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739722" ref_strand="+" ref_description="SGN-E739722 [LC18CE01]">
      <seq>tctttaagagactgttgattcacttgaatgtatgcatatatttactcagattgtagagattgtaaaactcgcacatactcaagggatagctgtgcataatgtgcgcccatcatgttttgttatgtcttcatttaaccgtgttgcgtttattgaatctgcttcctgctctgattcgggatcggattcatgtgaagatgaaccaaacagttcatcttcacctttgcaacttgagatgattcctgggaaggactctgctatagcatctgaaagcagttgcttgcagtcaagttcaggtcatatggtgcagactttggaagctaataagaatagacaagaggaagataacaacaagcataattttccaatgaaacagatattgcacttggaaactaattggtatactagtccagaagaggttaatgatgctccaggcacttgtgcttcagacatttatcgactcggagtgcttctctttgagctatactgcaccttcaactcatcagatgagaaaattgcaaatatgtcatgtctaagacatcgtgtcctacccccacagttgttgttgaaatggcctaaggaagcttcattttgcttatggttactacacccggacccaagtagtcggccaaaagtgggtgagttgctagaaagtgagttccttaaaactccaaggcatgaacttggaagaacgtgaagcagcgatagagcttaaagaaaaaataaatgagccggaattattactggagttcctttttactaatccaacagaaaaagcaggaggctgtggaaaaatttgcacaaaattgtgtcttttttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="58216" stop="60494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58510" g_stop="58987" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58988" i_stop="59099" i_length="112">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59100" g_stop="59257" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="636" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59258" i_stop="60014" i_length="757">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60015" g_stop="60194" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="819" r_length="183" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E739722" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58510" e_stop="58987"/>
          <exon e_start="59100" e_stop="59257"/>
          <exon e_start="60015" e_stop="60194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAAGAACTGTTGATTCACTTGAATGTATGCATATATTTACTCAGATTGTAGAGATTGTAAAACTCGCACATACTCAAGGGATAGCTGTGCATAATGTGCGCCCATCATGTTTTGTTATGTCTTCATTTAACCGTGTTGCGTTTATTGAATCTGCTTCCTGCTCTGATTCGGGATCGGATTCATGTGAAGATGAACCAAACAGTTCATCTTCACCTTTGCAACTTGAGATGATTCCTGGGAAGGACTCTGCTATAGCATCTGAAAGCAGTTGCTTGCAGTCAAGTTCAGGTCATATGGTGCAGACTTTGGAAGCTAATAAGAATAGACAAGAGGAAGATAACAACAAGCATAATTTTCCAATGAAACAGATATTGCACTTGGAAACTAATTGGTATACTAGTCCAGAAGAGGTTAATGATGCTCCAGGCACTTGTGCTTCAGACATTTATCGACTCGGAGTGCTTCTCTTTGAGGTTAGTAGCAATACTTAGCAACTCATTGGCGTTGAGGTGTGTGCTCAGTTAAATTTAACTGTATCCTCCATGATGATGTTTTGGCTTAATGATGCTTATAATTTATGAACAGCTATACTGCACCTTCAACTCATCAGATGAGAAAATTGCAAATATGTCATGTCTAAGACATCGTGTCCTACCCCCACAGTTGTTGTTGAAATGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACACCCGGACCCAAGTAGTCGGCCAAAAGTGGGGTGAGCATTCTGTTTTTTTTTGCATCTGCTTGGTTTATCTGTTTTTGCCAAAGAAAGTTTTCCTTCAAGGCATGCCAGTTTTTATTTGTTTGCAATCTGATCAGGTTGTTGTTGAAGTCTTCTAGGAGTAATGTTTACTGATATATAACATTATCCTTGAGAGCCTCGATTGTGGTCCTGTGATTGTTGATTTCCGAAGTGTTTACTTATTAAGGTTTATGTTAGAGTATCTATTTCCCTTGTGGAAGATAACTCGAAAGGTAAGAATCATGGGTTTTAGCTTATGCAGATTCTAGCCGCAGGAATAAAGGCAAATGCAGCAATGAAAACTTATCTTTATGCTATTAAACTAGGAAAAAAAAAATATTACACGTCATGCAACAGCAGTATCCTTTTTTCTTAATTAAGAATTGATCAGTATAATGGATCTAGGTTAGTATCTTGGGAGTAAGAATATTTTCATTGTAAGAAGTAAACTAGTTACACCCACCGAGGAGAGGGTGTTTATATATGATTTATGAAGATATGGCAGTACTATATTTCATGCATAATTAGCTAACCAATCAGCAGTGAGTCCCTTTTATCTAATCATGAAATTCATTTCAGAAATCTTGCTGTTCTCCTGAACTTTTTACTTCATCTGCTGCTTTTAGCGGATTTTCATTAAAATGAATATTATGCAATTGATCATCTTAACATCAATATCCTTGACTCTTTGCCTTTCTTTTCCTCATTCATTCCTTTAAATTGATGACAGTGAGTTGCTAGAAAGTGAGTTCCTTAAAACTCCAAGGCATG-ACTTGGAAGAACGTGAAGCAGCGATAGAGCTTAGAGAAAAAATAGATGAGCAGGAATTATTACTGGAGTTCC-TTTTACTAATCCAACAGAAAAAGCAGGAGGCTGTGG-AAAATTTGCACGAAATTGTGTCTTTTTTGTC</genome_strand>
        <mrna_strand>TCTTTAAGAGACTGTTGATTCACTTGAATGTATGCATATATTTACTCAGATTGTAGAGATTGTAAAACTCGCACATACTCAAGGGATAGCTGTGCATAATGTGCGCCCATCATGTTTTGTTATGTCTTCATTTAACCGTGTTGCGTTTATTGAATCTGCTTCCTGCTCTGATTCGGGATCGGATTCATGTGAAGATGAACCAAACAGTTCATCTTCACCTTTGCAACTTGAGATGATTCCTGGGAAGGACTCTGCTATAGCATCTGAAAGCAGTTGCTTGCAGTCAAGTTCAGGTCATATGGTGCAGACTTTGGAAGCTAATAAGAATAGACAAGAGGAAGATAACAACAAGCATAATTTTCCAATGAAACAGATATTGCACTTGGAAACTAATTGGTATACTAGTCCAGAAGAGGTTAATGATGCTCCAGGCACTTGTGCTTCAGACATTTATCGACTCGGAGTGCTTCTCTTTGAG................................................................................................................CTATACTGCACCTTCAACTCATCAGATGAGAAAATTGCAAATATGTCATGTCTAAGACATCGTGTCCTACCCCCACAGTTGTTGTTGAAATGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACACCCGGACCCAAGTAGTCGGCCAAAAGTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGCTAGAAAGTGAGTTCCTTAAAACTCCAAGGCATGAACTTGGAAGAACGTGAAGCAGCGATAGAGCTTAAAGAAAAAATAAATGAGCCGGAATTATTACTGGAGTTCCTTTTTACTAATCCAACAGAAAAAGCAGGAGGCTGTGGAAAAATTTGCACAAAATTGTGTCTTTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332037" ref_strand="+" ref_description="SGN-E332037 [cTOD-16-L4]">
      <seq>aaaggcatattgaaaataaaagcagcatttcggcaaaaagttctcggttgatgaaaaacttcagaaaattggaggcagcttatttcatgacgagacgcagggttattaaaagggacaaatctatgagtagaaactgtcaaacaagtccggaatgtaaaagttccgctacagctactgaaaggagttctctgagtaatttgtcatcaaagggagggtgcaatggtgatagacagaggggatggatcaattcatacttggagggcctatgcaagtacttctcttttagcaagttagaagtgaaggcagatttaaagcaaggggatcttctaaacccttccaatctcgtatgttctctcagctttgatcgtgatggtgaattttttgcaactgctggtgtaaataagaagatcaaagtttttgaatataactcaattctaaatgcggatcgtgacatacactatccagtcgttgaaatggctaatagatcaaagttgagcagtatatgttggaacggctatatcaaaagccagcttgcctcaagtaactttgaaggtgtggtgcaggtatgggatgtcacaagaagtcagcttttcatggagatgagagagcatgagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="60143" stop="61437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60443" g_stop="61005" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="61082" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61083" g_stop="61137" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="618" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E332037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60443" e_stop="61005"/>
          <exon e_start="61083" e_stop="61137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCATATTGAAAATAAAAGCAGCATTTCGGCAAAAAGTTCTCGGTTGATGAAAAACTTCAGAAAATTGGAGGCAGCTTATTTCATGACGAGACGCAGGGTTATTAAAAGGGACAAATCTATGAGTAGAAACTGTCAAACAAGTCCGGAATGTAAAAGTTCCGCTACAGCTACTGAAAGGAGTTCTCTGAGTAATTTGTCATCAAAGGGAGGGTGCAATGGTGATAGACAGAGGGGATGGATCAATTCATACTTGGAGGGCCTATGCAAGTACTTCTCTTTTAGCAAGTTAGAAGTGAAGGCAGATTTAAAGCAAGGGGATCTTCTAAACCCTTCCAATCTCGTATGTTCTCTCAGCTTTGATCGTGATGGTGAATTTTTTGCAACTGCTGGTGTAAATAAGAAGATCAAAGTTTTTGAATATAACTCAATTCTAAATGCGGATCGTGACATACACTATCCAGTCGTTGAAATGGCTAATAGATCAAAGTTGAGCAGTATATGTTGGAACGGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAGGTACGTCAAATTCATGATCATTCAGTCTTGTTTATTTAGCAGTAGCAGAAAGACGTTTGCTTAGAAACATAATACAGGTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAAC</genome_strand>
        <mrna_strand>AAAGGCATATTGAAAATAAAAGCAGCATTTCGGCAAAAAGTTCTCGGTTGATGAAAAACTTCAGAAAATTGGAGGCAGCTTATTTCATGACGAGACGCAGGGTTATTAAAAGGGACAAATCTATGAGTAGAAACTGTCAAACAAGTCCGGAATGTAAAAGTTCCGCTACAGCTACTGAAAGGAGTTCTCTGAGTAATTTGTCATCAAAGGGAGGGTGCAATGGTGATAGACAGAGGGGATGGATCAATTCATACTTGGAGGGCCTATGCAAGTACTTCTCTTTTAGCAAGTTAGAAGTGAAGGCAGATTTAAAGCAAGGGGATCTTCTAAACCCTTCCAATCTCGTATGTTCTCTCAGCTTTGATCGTGATGGTGAATTTTTTGCAACTGCTGGTGTAAATAAGAAGATCAAAGTTTTTGAATATAACTCAATTCTAAATGCGGATCGTGACATACACTATCCAGTCGTTGAAATGGCTAATAGATCAAAGTTGAGCAGTATATGTTGGAACGGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAG.............................................................................GTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735942" ref_strand="+" ref_description="SGN-E735942 [LC03DB01]">
      <seq>ccgttaaaagcagatttaaagcaaggggatcttctaaaaccttccttgggggggggtctctcacctttgatcccgatggtgaattttttaaaactgctggtgtaaataagaagatcaaagtttttgaatataactcaattctaaatgcggatcgtgacatacactatccagtcgttgaaatggctaatagatcaaagttgagcagtatatgttggaacggctatatcaaaagccagcttgcctcaagtaactttgaaggtgtggtgcaggtatgggatgtcacaagaagtcagcttttcatggagatgagagagcatgagaaacgtgtctggtctgttgatttttctttagcagatccaaccatgttggcaagtgggagcgatgatggttctgtgaagctttggaatatcaatcacggagtcagtgttggaacgataaaaacaaaagccaatgtctgctgtgttcagttccctgttgattcaggtcgggcccttgcttttggttcagcagatcataagatatattactatgacctacgaaactcgaagttgcctctatgcacattaattgggcccaacaagacagtgagctatgtcaagttcatagattcaacaactcttgtgtctgcctctacggacaatacaataaacctgtgggatctgtcaaacatgcacatctcgcattcttgattctcctcttcagtcatttactggaactatgaatgtaaagaactttgttggcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="60440" stop="63584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60736" g_stop="61005" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="61082" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61083" g_stop="61229" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="416" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61230" i_stop="61357" i_length="128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61358" g_stop="61669" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="729" r_length="313" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61670" i_stop="63268" i_length="1599">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63269" g_stop="63284" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="745" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E735942" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60736" e_stop="61005"/>
          <exon e_start="61083" e_stop="61229"/>
          <exon e_start="61358" e_stop="61669"/>
          <exon e_start="63269" e_stop="63284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGAAGGCAGATTTAAAGCAAGGGGATCTTCTAAACCCTTCCAATCTCGTATGTTCTCTCAGCTTTGATCGTGATGGTGAATTTTTTGCAACTGCTGGTGTAAATAAGAAGATCAAAGTTTTTGAATATAACTCAATTCTAAATGCGGATCGTGACATACACTATCCAGTCGTTGAAATGGCTAATAGATCAAAGTTGAGCAGTATATGTTGGAACGGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAGGTACGTCAAATTCATGATCATTCAGTCTTGTTTATTTAGCAGTAGCAGAAAGACGTTTGCTTAGAAACATAATACAGGTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAGGCAATTCTACTTTTGCACTTGGTGGATGTCAGCTTTAAAACTAAATGTACTACAGTCATCTAGTTATTGTTGCTGTTAATTGAATGTGGATGTGTAATAAGTTGGTTTGTCTTACCTGTTTGCCACAGGGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCA-ACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAGGTATCATACTTAGATCCTATCACCTGAATAAAGATTTTGTTTCTGTGATCTCATCGAACAGTGTGACTGTTGTAACATTCTCAGTGATATAGTTAAGAGAGATCTAAGTTGCCCATACAGTTGATTAAATCCATTATTCTAAATTCCTATCTGATTTCCGTTCTCCGGGAGTTCAATTTTCTCTTAATTTTTCTTCTTCTTAGGTAAAAAGGAAAAAGTACGTATTTTGTGAATTGTTCACCTGATTTGTGAAATCAAGATTGAGTGCAAATGAATTTGCCAATTTCCCAGCCATGGACGTATAACGTTTTTGTATAAGAGCAATAGGTAGGTTTGGGTCTGTAGTGTAGCTAATCTAGAATATTTTCTATCCGAGCTGGACCGAAATTATTCAAAGCGGAGTTTGAACTGTTCGATTCCTTTCATATTGTCTACTCTAACTACTCCACAAGCATATCCGCTTGCTCCAACCCCTGCTAGCCACCTGTCATGCCCCAAAACTTAGTGACTGCATGATGAGCCCCCACCGCCCTAACTTCCATACAGTGAACCAAGTGAACATTTCATACCCATTCATAGACTGTGTGCACCATTAAATTAAGCATTCACGGTCTTTAAAGGTTAACATATGGCTCATTCTTGTTATTTATCCTTTCTATATCTTCTAAATTATACCATGCATACATTATCATGTCCCAAAAACTTCACCACCTTCATGTGGGTCCATACACACCTCAGGACTACCTGAATCATGCAATTAGGATTGTAACTTGCCCAAATAATTTTTTAGATGTTTCGGGGCTTTATGCCACCTAGTACTGAATGAGTCTCAACCTAAACATACCCAGTCCTCTACTTGATGTCAGCCAGTTTTGATCCTCTTCAGAACCACGAGAGAAGTTGGATTTTTGACTACCAGCTTGATTCTTCACTACCCTTGGTAGAATCTACCTATGTCTCAATGACAACAAGTCTACCTATAAGGCCTTTCCTGTTCCACTGTTATGGTAAACTTTTAAATAGATGAATTGGAATGGAGTTTTGAATAGCTTTTGTTGCGGGTTAAGGAAATGGAGATTTTACAAAAAAAAAAAAAAGTAGGGTGGGAGCAGCAATAGGGACTAAACCAGGATGAATAGATGAAGAAGAGGTGGACAGAGAAAGGAAGCGATTAAATATGTGTACATGTTGCATAAATTTAATAAATATGCACAAGCTTGTCTTGGATATCTAGAGAATCAAGTTACAGTCTTGCATATGTGACCCGTCTTAAAGCATTCATATGTCATATTGCACTCTCTCTATAATGTAGTTAATCAAATGATAGATTATTGACACGTAACTTATATTAAGTATATAGAAGCTTATGCATCTATAAAGTAATTCTCAGCCATACCTAAAAAAAGATTAGTTGGTTTGTATCATCAAGACTGTCACCAGTCTCTTCTTTTTGAGATATGACCAAAAGTAACCAAATCATGTCTCTAGTTTCTGCATACAACTTACTCCTGATTTGTGCTTTGTATCTTCCCTTTCCCGTGATAATGTAATTGTGCTTGAATATGCTTTGCTACTGATGAAAGCATTTCTTTGTTTCAGAACTTTGTTGGCCTAT</genome_strand>
        <mrna_strand>CCGTTAAAAGCAGATTTAAAGCAAGGGGATCTTCTAAAACCTTCC-TTGGGGGGGGGTCTCTCACCTTTGATCCCGATGGTGAATTTTTTAAAACTGCTGGTGTAAATAAGAAGATCAAAGTTTTTGAATATAACTCAATTCTAAATGCGGATCGTGACATACACTATCCAGTCGTTGAAATGGCTAATAGATCAAAGTTGAGCAGTATATGTTGGAACGGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAG.............................................................................GTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAC................................................................................................................................GGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCCCAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCCTCTACGGACAATACAATAAACCTGTGGGATCTGTCAAACATGCACATCTCGCATTCTTGATTCTCCTCTTCAGTCATTTACTGGAACTATGAATGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGTTGGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739923" ref_strand="+" ref_description="SGN-E739923 [LC19BD12]">
      <seq>ggctatatcaaaagccagcttgcctcaagtaactttgaaggtgtggtgcaggtatgggatgtcacaagaagtcagcttttcatggagatgagagagcatgagaaacgtgtctggtctgttgatttttctttagcagatccaaccatgttggcaagtgggagcgatgatggttctgtgaagctttggaatatcaatcagggagtcagtgttggaacgataaaaacaaaagccaatgtctgctgtgttcagttccctgttgattcaggtcgggcccttgcttttggttcagcagatcataagatatattactatgacctacgaaactcgaagttgcctctatgcacattaattgggcacaacaagacagtgagctatgtcaagttcatagattcaacaactcttgtgtctgcatctacggacaatacaataaagctgtgggatctgtcaacatgcacatctcgtattcttgattctcctcttcagtcatttactggacatatgaatgtaaagaactttgttggcctatctgtatctgatggttacatagcaactggctcagagacaaatgaggttgtcatctaccacaaagcttttcccatgccagcattgtcatttaaatttaactgcacagatccgctttctggtgatgaagtggacgacagtgcacagttcatctcatctgtgtgttggcgtggtcagtccccttctttagttgccgcaaattctatgggaaatatcaagctcttggagatggtataatgtggtttaattccatgaaggttgactagttacttcaagatgaggaaaggtgtgaaggagaagagttcggtaaatgtcaatgagggagttacatcaagatattgttgtagaagagataaactcgatacgatgccatggtaacaggaaagtgcccatcagaaacaatatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="60655" stop="65948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60955" g_stop="61005" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="61082" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61083" g_stop="61229" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="198" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61230" i_stop="61357" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61358" g_stop="61669" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="510" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61670" i_stop="63268" i_length="1599">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63269" g_stop="63328" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="570" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63329" i_stop="65284" i_length="1956">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65285" g_stop="65648" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="932" r_length="362" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E739923" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60955" e_stop="61005"/>
          <exon e_start="61083" e_stop="61229"/>
          <exon e_start="61358" e_stop="61669"/>
          <exon e_start="63269" e_stop="63328"/>
          <exon e_start="65285" e_stop="65648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAGGTACGTCAAATTCATGATCATTCAGTCTTGTTTATTTAGCAGTAGCAGAAAGACGTTTGCTTAGAAACATAATACAGGTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAGGCAATTCTACTTTTGCACTTGGTGGATGTCAGCTTTAAAACTAAATGTACTACAGTCATCTAGTTATTGTTGCTGTTAATTGAATGTGGATGTGTAATAAGTTGGTTTGTCTTACCTGTTTGCCACAGGGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCAACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAGGTATCATACTTAGATCCTATCACCTGAATAAAGATTTTGTTTCTGTGATCTCATCGAACAGTGTGACTGTTGTAACATTCTCAGTGATATAGTTAAGAGAGATCTAAGTTGCCCATACAGTTGATTAAATCCATTATTCTAAATTCCTATCTGATTTCCGTTCTCCGGGAGTTCAATTTTCTCTTAATTTTTCTTCTTCTTAGGTAAAAAGGAAAAAGTACGTATTTTGTGAATTGTTCACCTGATTTGTGAAATCAAGATTGAGTGCAAATGAATTTGCCAATTTCCCAGCCATGGACGTATAACGTTTTTGTATAAGAGCAATAGGTAGGTTTGGGTCTGTAGTGTAGCTAATCTAGAATATTTTCTATCCGAGCTGGACCGAAATTATTCAAAGCGGAGTTTGAACTGTTCGATTCCTTTCATATTGTCTACTCTAACTACTCCACAAGCATATCCGCTTGCTCCAACCCCTGCTAGCCACCTGTCATGCCCCAAAACTTAGTGACTGCATGATGAGCCCCCACCGCCCTAACTTCCATACAGTGAACCAAGTGAACATTTCATACCCATTCATAGACTGTGTGCACCATTAAATTAAGCATTCACGGTCTTTAAAGGTTAACATATGGCTCATTCTTGTTATTTATCCTTTCTATATCTTCTAAATTATACCATGCATACATTATCATGTCCCAAAAACTTCACCACCTTCATGTGGGTCCATACACACCTCAGGACTACCTGAATCATGCAATTAGGATTGTAACTTGCCCAAATAATTTTTTAGATGTTTCGGGGCTTTATGCCACCTAGTACTGAATGAGTCTCAACCTAAACATACCCAGTCCTCTACTTGATGTCAGCCAGTTTTGATCCTCTTCAGAACCACGAGAGAAGTTGGATTTTTGACTACCAGCTTGATTCTTCACTACCCTTGGTAGAATCTACCTATGTCTCAATGACAACAAGTCTACCTATAAGGCCTTTCCTGTTCCACTGTTATGGTAAACTTTTAAATAGATGAATTGGAATGGAGTTTTGAATAGCTTTTGTTGCGGGTTAAGGAAATGGAGATTTTACAAAAAAAAAAAAAAGTAGGGTGGGAGCAGCAATAGGGACTAAACCAGGATGAATAGATGAAGAAGAGGTGGACAGAGAAAGGAAGCGATTAAATATGTGTACATGTTGCATAAATTTAATAAATATGCACAAGCTTGTCTTGGATATCTAGAGAATCAAGTTACAGTCTTGCATATGTGACCCGTCTTAAAGCATTCATATGTCATATTGCACTCTCTCTATAATGTAGTTAATCAAATGATAGATTATTGACACGTAACTTATATTAAGTATATAGAAGCTTATGCATCTATAAAGTAATTCTCAGCCATACCTAAAAAAAGATTAGTTGGTTTGTATCATCAAGACTGTCACCAGTCTCTTCTTTTTGAGATATGACCAAAAGTAACCAAATCATGTCTCTAGTTTCTGCATACAACTTACTCCTGATTTGTGCTTTGTATCTTCCCTTTCCCGTGATAATGTAATTGTGCTTGAATATGCTTTGCTACTGATGAAAGCATTTCTTTGTTTCAGAACTTTGTTGGCCTATCTGTATCTGATGGTTACATAGCAACTGGCTCAGAGACAAATGAGGTATCATTTATTACCGCAAAGTTGAATCTGTACTTGTGTACTTGAGTGCATTTTAAATGAGTTATGAGCAATAATTCCACCGAAAATGTTTGTTTACATCATATTAAAGGGAATAGTTGACTAGAACTGGTTCCTTGAGCATCAAGATACATGCGGCTGCAATTTTTGTTTAAAGTTCCAGATAGCTGTTTACAATAAAGGTACAGAAAGCAAGTATTTTATGCTAAAAATACAAAATGACTTATCATGAAATGATTTTTTTTACCAGAAGGCATACAATATGACCAGTCATGCTGAAATACAAGTATTTTATGCTAAAAATACAAAATGACTTATCATGAAATGATTTTTTTTACCAGAAGGCATACAATATGACCAGTCATGCTGAAATACAATATGAAAAAAGTACAAACTGGTCAAAACTCACTTACATGAAATGGAATTTGGCACCCTCAACACTAGGTGTAATCTGAATGTTCTAGACAACACGTTGGGTTTTGAGCATGTGTTCACCTTGTGCCAATTGCCACTTGTGCAATATGTTACCCGTCTTTATTTAGACATTTATAGATCTGTCTTTAGATTATACTGTGCATGTACGGCATTGAGACGTGCACATGAATGACATCACTAATTACATCCTTACATGTGTCCTTGTGATGGCTATCATTTATTTGCCTCAGACTGTCAGTTGGTACCTTATGTTTATAATTTGCACAAGTAGGTTCCTAGACAGTCTGCAAAAGATGTTTTCCTTGGCTTCAGGAGGAAACCAAAGGATTTCAGTTTCTTTTTATGGCTCTAAGTTCACATAAATATTACAACCACACAAATATCTAAGGATTGTTTAGATCACAAGTTTCAAAAGTCTTCCTTTTTTCTTAAATTTCAAGTGGTTTCACACTCCCTTGGCAATTCAAAGAACTGTTAAAGATTTGATGTTCAGTTGGAAGAGCAGGAGAAGGAGAAGAAGACGAAGGGTTTGGAATGTGGTTCCACTTGCATTAATGTGGGTAGGTTGGAGAGAGTAATAGGAGAGCTTTTGAAGGAGTAGAATCGAGTCTCCCTCAGTTGGGGAGTAGTCTCCGCTCCCTTATTTTCTTTTGGTGTAAATAGAAAGTTCTTTGTTGTATAGATGGTTGGGTGGAGTTTGTAGAGAATCATATTTTGTAGAATCTTCACCTTTTAATTTGGTATATATACCCCATGTATACGGCCAGTTTGGCCATGTTTATGAATGAAAATACCTTTACTTGATCAAAAAAAATATTTATGATCTGATTCATGTATTGTTGAGCCTTCTGTTGATCCTTTGAAGAATGAAGCGCTCATTCTTCTTTGAAGTATATAAAACTATAAAAGGAGATGAAGTAATTGACTGGTACATCCCATAGCAGAATATCTAGTACTTAGATAATGCTCTAGACACCTAATGTGCGAAAAGCTTCAGTCCATATTATCGAGCCTCCAACTCCAAACCTTAACAATTTAACAGTCTGCCAACAGGAAGAAACTACTTTTTTATCCTGTATCTTGAGTAGTTCTGTTTGATCTGGTTCTCTCCTCACATAATGTACACACAGAGAAGGGAAATTTGGTTCGAAAAGTTTGTGATTCTTCTGTAATCATTCCCCTCCCACATTTCCCACCGCAAAAGAAATAAATAAGTATGTGTAGTTCATCTTTGAATTGAGGCAGGTTTCTTTTGGAGTCCCCATCTTATAAGCATTTGAACATTATGCGTATGTTGCTCGGAATCTCCAAAAATGTTTCCGCACCCATATCTGATCCTCCAATAATACTCTACTTTTGGAGGATCCTACACGCACCGTAATATTTTCGAAGAGTCCGAACAATATATTCCATCATCTAATGCCATTTCTGGTGATTATTAGTGCTGACTGCTGCTGACTTTTCCATTATTAATGTGTAATTGTTACATCCGTCATGCTGCAGGTTGTCATCTACCACAAAGCTTTTCCCATGCCAGCATTGTCATTTAAATTTAACTGCACAGATCCGCTTTCTGGTGATGAAGTGGACGACAGTGCACAGTTCATCTCATCTGTGTGTTGGCGTGGTCAGTCCCCTTCTTTAGTTGCCGCAAATTCTATGGGAAATATCAAGCTCTTGGAGATGGTATAATGTGGTTTAATTCCATGAAGGTTGACTAGTTACTTCAAGATGAGGAAAGGTGTGAAGGAGAAGAGTTCGGTAAATGTCAATGAGGGAGTTACATCAAGATATTGTTGTAGAAGAGATAAACTCGATACGATGCCATGGTAACAAGGAAGTTGCCATCAAGAAACAAATATTTTTG</genome_strand>
        <mrna_strand>GGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAG.............................................................................GTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAG................................................................................................................................GGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCAACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGTTGGCCTATCTGTATCTGATGGTTACATAGCAACTGGCTCAGAGACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCATCTACCACAAAGCTTTTCCCATGCCAGCATTGTCATTTAAATTTAACTGCACAGATCCGCTTTCTGGTGATGAAGTGGACGACAGTGCACAGTTCATCTCATCTGTGTGTTGGCGTGGTCAGTCCCCTTCTTTAGTTGCCGCAAATTCTATGGGAAATATCAAGCTCTTGGAGATGGTATAATGTGGTTTAATTCCATGAAGGTTGACTAGTTACTTCAAGATGAGGAAAGGTGTGAAGGAGAAGAGTTCGGTAAATGTCAATGAGGGAGTTACATCAAGATATTGTTGTAGAAGAGATAAACTCGATACGATGCCATGGTAACAGGAAAGTGCCCATC-AGAAAC-AATATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737489" ref_strand="+" ref_description="SGN-E737489 [LC10AC01]">
      <seq>ggctatatcaaaagccagcttgcctcaagtaactttgaaggtgtggtgcaggggtgggatgtcacaagaagtcagcttttcatggagatgaaaaagcatgagaaacgtgtctggtctgttgatttttctttagcagatccaaccatgttggcaagtgggagcgatgatggttctgtgaagctttggaatatcaatcagggagtcagtgttggaacgataaaaacaaaagccaatgtctgctgtgttcagttccctgttgattcaggtcgggcccttgcttttggttcagcagatcataagatatattactatgacctacgaaactcgaagttgcctctatgcacattaattgggcacaacaagacagtgagctatgtcaagttcatagattcaacaactcttgtgtctgcatctacggacaatacaataaagctgtgggatctgtcaacatgcacatctcgtattcttgattctcctcttcagtcatttactggacatatgaatgtaaagaactttgttggcctatctgtatctgatggttacatagcaactggctcagagacaaatgaggttgtcatctaccacaaagcttttcccatgccagcattgtcatttaaatttaactgcacagatccgctttctggtgatgaagtggacgacagtgcacagttcatctcatctgtgtgttggcgtggtcagtccccttctttagttgccgcaaattctatgggaaatatcaacctcttggagatggtataatgtggtttaattccatgaaggttgactagttacttcaagatgaggaaaggtgtgaaggagaagagttcggtaaatgtcaatgagggagttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="60655" stop="65867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60955" g_stop="61005" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="61082" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61083" g_stop="61229" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="198" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61230" i_stop="61357" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61358" g_stop="61669" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="510" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61670" i_stop="63268" i_length="1599">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63269" g_stop="63328" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="570" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63329" i_stop="65284" i_length="1956">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65285" g_stop="65567" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="853" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E737489" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60955" e_stop="61005"/>
          <exon e_start="61083" e_stop="61229"/>
          <exon e_start="61358" e_stop="61669"/>
          <exon e_start="63269" e_stop="63328"/>
          <exon e_start="65285" e_stop="65567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAGGTACGTCAAATTCATGATCATTCAGTCTTGTTTATTTAGCAGTAGCAGAAAGACGTTTGCTTAGAAACATAATACAGGTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAGGCAATTCTACTTTTGCACTTGGTGGATGTCAGCTTTAAAACTAAATGTACTACAGTCATCTAGTTATTGTTGCTGTTAATTGAATGTGGATGTGTAATAAGTTGGTTTGTCTTACCTGTTTGCCACAGGGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCAACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAGGTATCATACTTAGATCCTATCACCTGAATAAAGATTTTGTTTCTGTGATCTCATCGAACAGTGTGACTGTTGTAACATTCTCAGTGATATAGTTAAGAGAGATCTAAGTTGCCCATACAGTTGATTAAATCCATTATTCTAAATTCCTATCTGATTTCCGTTCTCCGGGAGTTCAATTTTCTCTTAATTTTTCTTCTTCTTAGGTAAAAAGGAAAAAGTACGTATTTTGTGAATTGTTCACCTGATTTGTGAAATCAAGATTGAGTGCAAATGAATTTGCCAATTTCCCAGCCATGGACGTATAACGTTTTTGTATAAGAGCAATAGGTAGGTTTGGGTCTGTAGTGTAGCTAATCTAGAATATTTTCTATCCGAGCTGGACCGAAATTATTCAAAGCGGAGTTTGAACTGTTCGATTCCTTTCATATTGTCTACTCTAACTACTCCACAAGCATATCCGCTTGCTCCAACCCCTGCTAGCCACCTGTCATGCCCCAAAACTTAGTGACTGCATGATGAGCCCCCACCGCCCTAACTTCCATACAGTGAACCAAGTGAACATTTCATACCCATTCATAGACTGTGTGCACCATTAAATTAAGCATTCACGGTCTTTAAAGGTTAACATATGGCTCATTCTTGTTATTTATCCTTTCTATATCTTCTAAATTATACCATGCATACATTATCATGTCCCAAAAACTTCACCACCTTCATGTGGGTCCATACACACCTCAGGACTACCTGAATCATGCAATTAGGATTGTAACTTGCCCAAATAATTTTTTAGATGTTTCGGGGCTTTATGCCACCTAGTACTGAATGAGTCTCAACCTAAACATACCCAGTCCTCTACTTGATGTCAGCCAGTTTTGATCCTCTTCAGAACCACGAGAGAAGTTGGATTTTTGACTACCAGCTTGATTCTTCACTACCCTTGGTAGAATCTACCTATGTCTCAATGACAACAAGTCTACCTATAAGGCCTTTCCTGTTCCACTGTTATGGTAAACTTTTAAATAGATGAATTGGAATGGAGTTTTGAATAGCTTTTGTTGCGGGTTAAGGAAATGGAGATTTTACAAAAAAAAAAAAAAGTAGGGTGGGAGCAGCAATAGGGACTAAACCAGGATGAATAGATGAAGAAGAGGTGGACAGAGAAAGGAAGCGATTAAATATGTGTACATGTTGCATAAATTTAATAAATATGCACAAGCTTGTCTTGGATATCTAGAGAATCAAGTTACAGTCTTGCATATGTGACCCGTCTTAAAGCATTCATATGTCATATTGCACTCTCTCTATAATGTAGTTAATCAAATGATAGATTATTGACACGTAACTTATATTAAGTATATAGAAGCTTATGCATCTATAAAGTAATTCTCAGCCATACCTAAAAAAAGATTAGTTGGTTTGTATCATCAAGACTGTCACCAGTCTCTTCTTTTTGAGATATGACCAAAAGTAACCAAATCATGTCTCTAGTTTCTGCATACAACTTACTCCTGATTTGTGCTTTGTATCTTCCCTTTCCCGTGATAATGTAATTGTGCTTGAATATGCTTTGCTACTGATGAAAGCATTTCTTTGTTTCAGAACTTTGTTGGCCTATCTGTATCTGATGGTTACATAGCAACTGGCTCAGAGACAAATGAGGTATCATTTATTACCGCAAAGTTGAATCTGTACTTGTGTACTTGAGTGCATTTTAAATGAGTTATGAGCAATAATTCCACCGAAAATGTTTGTTTACATCATATTAAAGGGAATAGTTGACTAGAACTGGTTCCTTGAGCATCAAGATACATGCGGCTGCAATTTTTGTTTAAAGTTCCAGATAGCTGTTTACAATAAAGGTACAGAAAGCAAGTATTTTATGCTAAAAATACAAAATGACTTATCATGAAATGATTTTTTTTACCAGAAGGCATACAATATGACCAGTCATGCTGAAATACAAGTATTTTATGCTAAAAATACAAAATGACTTATCATGAAATGATTTTTTTTACCAGAAGGCATACAATATGACCAGTCATGCTGAAATACAATATGAAAAAAGTACAAACTGGTCAAAACTCACTTACATGAAATGGAATTTGGCACCCTCAACACTAGGTGTAATCTGAATGTTCTAGACAACACGTTGGGTTTTGAGCATGTGTTCACCTTGTGCCAATTGCCACTTGTGCAATATGTTACCCGTCTTTATTTAGACATTTATAGATCTGTCTTTAGATTATACTGTGCATGTACGGCATTGAGACGTGCACATGAATGACATCACTAATTACATCCTTACATGTGTCCTTGTGATGGCTATCATTTATTTGCCTCAGACTGTCAGTTGGTACCTTATGTTTATAATTTGCACAAGTAGGTTCCTAGACAGTCTGCAAAAGATGTTTTCCTTGGCTTCAGGAGGAAACCAAAGGATTTCAGTTTCTTTTTATGGCTCTAAGTTCACATAAATATTACAACCACACAAATATCTAAGGATTGTTTAGATCACAAGTTTCAAAAGTCTTCCTTTTTTCTTAAATTTCAAGTGGTTTCACACTCCCTTGGCAATTCAAAGAACTGTTAAAGATTTGATGTTCAGTTGGAAGAGCAGGAGAAGGAGAAGAAGACGAAGGGTTTGGAATGTGGTTCCACTTGCATTAATGTGGGTAGGTTGGAGAGAGTAATAGGAGAGCTTTTGAAGGAGTAGAATCGAGTCTCCCTCAGTTGGGGAGTAGTCTCCGCTCCCTTATTTTCTTTTGGTGTAAATAGAAAGTTCTTTGTTGTATAGATGGTTGGGTGGAGTTTGTAGAGAATCATATTTTGTAGAATCTTCACCTTTTAATTTGGTATATATACCCCATGTATACGGCCAGTTTGGCCATGTTTATGAATGAAAATACCTTTACTTGATCAAAAAAAATATTTATGATCTGATTCATGTATTGTTGAGCCTTCTGTTGATCCTTTGAAGAATGAAGCGCTCATTCTTCTTTGAAGTATATAAAACTATAAAAGGAGATGAAGTAATTGACTGGTACATCCCATAGCAGAATATCTAGTACTTAGATAATGCTCTAGACACCTAATGTGCGAAAAGCTTCAGTCCATATTATCGAGCCTCCAACTCCAAACCTTAACAATTTAACAGTCTGCCAACAGGAAGAAACTACTTTTTTATCCTGTATCTTGAGTAGTTCTGTTTGATCTGGTTCTCTCCTCACATAATGTACACACAGAGAAGGGAAATTTGGTTCGAAAAGTTTGTGATTCTTCTGTAATCATTCCCCTCCCACATTTCCCACCGCAAAAGAAATAAATAAGTATGTGTAGTTCATCTTTGAATTGAGGCAGGTTTCTTTTGGAGTCCCCATCTTATAAGCATTTGAACATTATGCGTATGTTGCTCGGAATCTCCAAAAATGTTTCCGCACCCATATCTGATCCTCCAATAATACTCTACTTTTGGAGGATCCTACACGCACCGTAATATTTTCGAAGAGTCCGAACAATATATTCCATCATCTAATGCCATTTCTGGTGATTATTAGTGCTGACTGCTGCTGACTTTTCCATTATTAATGTGTAATTGTTACATCCGTCATGCTGCAGGTTGTCATCTACCACAAAGCTTTTCCCATGCCAGCATTGTCATTTAAATTTAACTGCACAGATCCGCTTTCTGGTGATGAAGTGGACGACAGTGCACAGTTCATCTCATCTGTGTGTTGGCGTGGTCAGTCCCCTTCTTTAGTTGCCGCAAATTCTATGGGAAATATCAAGCTCTTGGAGATGGTATAATGTGGTTTAATTCCATGAAGGTTGACTAGTTACTTCAAGATGAGGAAAGGTGTGAAGGAGAAGAGTTCGGTAAATGTCAATGAGGGAGTTACAT</genome_strand>
        <mrna_strand>GGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAG.............................................................................GGGTGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAAAAAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAG................................................................................................................................GGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCAACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGTTGGCCTATCTGTATCTGATGGTTACATAGCAACTGGCTCAGAGACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCATCTACCACAAAGCTTTTCCCATGCCAGCATTGTCATTTAAATTTAACTGCACAGATCCGCTTTCTGGTGATGAAGTGGACGACAGTGCACAGTTCATCTCATCTGTGTGTTGGCGTGGTCAGTCCCCTTCTTTAGTTGCCGCAAATTCTATGGGAAATATCAACCTCTTGGAGATGGTATAATGTGGTTTAATTCCATGAAGGTTGACTAGTTACTTCAAGATGAGGAAAGGTGTGAAGGAGAAGAGTTCGGTAAATGTCAATGAGGGAGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228701" ref_strand="+" ref_description="SGN-E228701 [cLEL-29-L12](-)">
      <seq>gatacgatgccatggtaacaaggaagttgccatcaagaaacaaatatttttgtagttagttcatagcggaagcaactcgatggaagcatgagatttttctcatcgtggaatgtgctgtaaatagatattggttagggggtgtgggaaggaagcgatgcaagtgttattctctttgtatattctgtaattttgaggtctaacggagatttcatgaatgttatatctttgcctgatgacagtgagtagaagaatacaagcagcgtcttagaatccatgctgtatctcatttagttcacactgatctgatcagctgctaaacacgcgagtacaaggaagcagaggtaacatttcagattattcactttcgagtacattctgtctaagatatgtatgctgttcataaccagccaacttgtttgacagaaaaaacatacaaaatcatgaatacaaagtttccatcattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="65297" stop="66361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65597" g_stop="66061" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="481"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E228701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65597" e_stop="66061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACGATGCCATGGTAACAAGGAAGTTGCCATCAAGAAACAAATATTTTTGTAGTTAGTTCATAGCGGAAGCAACTCGATGGAAGCATGAGATTTTTCTCATCGTGGAATGTGCTGTAAATAGATATTGGTTAGGGGGTGTGGGAAGGAAGCGATGCAAGTGTTATTCTCTTTGTATATTCTGTAATTTTGAGGTCTAACGGAGATTTCATGAATGTTATATCTTTGCCTGATGACAGTGAGTAGAAGAATACAAGCAGCGTCTTAGAATCCATGCTGTATCTCATTTAGTTCACACTGATCTGATCAGCTGCTAAACACGCGAGTACAAGGAAGCAGAGGTAACATTTCAGATTATTCACTTTCGAGTACATTCTGTCTAAGATATGTATGCTGTTCATAACCAGCCAACTTGTTTGACAGAAAAAACATACAAAATCATGAATACAAAGTTTCCATCATTCA</genome_strand>
        <mrna_strand>GATACGATGCCATGGTAACAAGGAAGTTGCCATCAAGAAACAAATATTTTTGTAGTTAGTTCATAGCGGAAGCAACTCGATGGAAGCATGAGATTTTTCTCATCGTGGAATGTGCTGTAAATAGATATTGGTTAGGGGGTGTGGGAAGGAAGCGATGCAAGTGTTATTCTCTTTGTATATTCTGTAATTTTGAGGTCTAACGGAGATTTCATGAATGTTATATCTTTGCCTGATGACAGTGAGTAGAAGAATACAAGCAGCGTCTTAGAATCCATGCTGTATCTCATTTAGTTCACACTGATCTGATCAGCTGCTAAACACGCGAGTACAAGGAAGCAGAGGTAACATTTCAGATTATTCACTTTCGAGTACATTCTGTCTAAGATATGTATGCTGTTCATAACCAGCCAACTTGTTTGACAGAAAAAACATACAAAATCATGAATACAAAGTTTCCATCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229181" ref_strand="+" ref_description="SGN-E229181 [cLEL-29-L12](-)">
      <seq>agttagttcatagcggaagcaactcgatgcaagcatgaggtttttctcatcgtggaatgtgctgtaaatagatattggttagggggtgtgggaaggaagcgatgcaagtgttattctctttgtatattctgtaattttgaggtctaacggagatttcatgaatgttatatctttgcctgatgacagtgagtagaagaatacaagcagcgtcttagaatccatgctgtatctcatttagttcacactgatctgatcagctgctaaacacgcgagtacaaggaagcagaggttgcttttcagattattcactttcgagtacattctgtctaagatatgtatgctgttcataaccagccaacttgtttgacagaaaaaacatacaaaatcatgaatacaaagtttccatcattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="65350" stop="66361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65650" g_stop="66061" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="428"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E229181" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65650" e_stop="66061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGTTCATAGCGGAAGCAACTCGATGGAAGCATGAGATTTTTCTCATCGTGGAATGTGCTGTAAATAGATATTGGTTAGGGGGTGTGGGAAGGAAGCGATGCAAGTGTTATTCTCTTTGTATATTCTGTAATTTTGAGGTCTAACGGAGATTTCATGAATGTTATATCTTTGCCTGATGACAGTGAGTAGAAGAATACAAGCAGCGTCTTAGAATCCATGCTGTATCTCATTTAGTTCACACTGATCTGATCAGCTGCTAAACACGCGAGTACAAGGAAGCAGAGGTAACATTTCAGATTATTCACTTTCGAGTACATTCTGTCTAAGATATGTATGCTGTTCATAACCAGCCAACTTGTTTGACAGAAAAAACATACAAAATCATGAATACAAAGTTTCCATCATTCA</genome_strand>
        <mrna_strand>AGTTAGTTCATAGCGGAAGCAACTCGATGCAAGCATGAGGTTTTTCTCATCGTGGAATGTGCTGTAAATAGATATTGGTTAGGGGGTGTGGGAAGGAAGCGATGCAAGTGTTATTCTCTTTGTATATTCTGTAATTTTGAGGTCTAACGGAGATTTCATGAATGTTATATCTTTGCCTGATGACAGTGAGTAGAAGAATACAAGCAGCGTCTTAGAATCCATGCTGTATCTCATTTAGTTCACACTGATCTGATCAGCTGCTAAACACGCGAGTACAAGGAAGCAGAGGTTGCTTTTCAGATTATTCACTTTCGAGTACATTCTGTCTAAGATATGTATGCTGTTCATAACCAGCCAACTTGTTTGACAGAAAAAACATACAAAATCATGAATACAAAGTTTCCATCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305859" ref_strand="+" ref_description="SGN-E305859 [cLEX-14-L16]">
      <seq>atgcaccagaattcacttcaactgttatcaaccatgacatgcactatatttcttgggatgttcctccaagacagcatccacatacacttaccctcaatgacactgcaaatatgatagcaagtggagcagcgtttgcgcgcaagttcaagcaagatgatcctgttttagacaagattgatatggaattactaaataggagtaatggtagcttcacacctggtggttggtgtgctggaaatcctccttgttctaaagttggaaatccaacaaaacttaggccaggtccagggggtcaaagacttcgacgtcttattgatgaactagtattttcagctaaatatggtcagaaccagtgtagttagatctttgttgtatttgcatccttgcttgctaatccacaaaagcaggggggacaaaaatgtatcattaaaagagccagacaaatatatcgacaatgaactcagccatttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="67069" stop="65997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66769" g_stop="66297" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E305859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66769" e_stop="66297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACCAGAATTCACTTCAACTGTTATCAACCATGACATGCACTATATTTCTTGGGATGTTCCTCCAAGACAGCATCCACATACACTTACCCTCAATGACACTGCAAATATGATAGCAAGTGGAGCAGCGTTTGCGCGCAAGTTCAAGCAAGATGATCCTGTTTTAGACAAGATTGATATGGAATTACTAAATAGGAGTAATGGTAGCTTCACACCTGGTGGTTGGTGTGCTGGAAATCCTCCTTGTTCTAAAGTTGGAAATCCAACAAAACTTAGGCCAGGTCCAGGGGGTCAAAGACTTCGACGTCTTATTGATGAACTAGTATTTTCAGCTAAATATGGTCAGAACCAGTGTAGTTAGATCTTTGTTGTATTTGCATCCTTGCTTGCTAATCCACAAAAGCAGGGGGGACAAAAATGTATCATTAAAAGAGCCAGACAAATATATCGACAATGAACTCAGCCATTTGTC</genome_strand>
        <mrna_strand>ATGCACCAGAATTCACTTCAACTGTTATCAACCATGACATGCACTATATTTCTTGGGATGTTCCTCCAAGACAGCATCCACATACACTTACCCTCAATGACACTGCAAATATGATAGCAAGTGGAGCAGCGTTTGCGCGCAAGTTCAAGCAAGATGATCCTGTTTTAGACAAGATTGATATGGAATTACTAAATAGGAGTAATGGTAGCTTCACACCTGGTGGTTGGTGTGCTGGAAATCCTCCTTGTTCTAAAGTTGGAAATCCAACAAAACTTAGGCCAGGTCCAGGGGGTCAAAGACTTCGACGTCTTATTGATGAACTAGTATTTTCAGCTAAATATGGTCAGAACCAGTGTAGTTAGATCTTTGTTGTATTTGCATCCTTGCTTGCTAATCCACAAAAGCAGGGGGGACAAAAATGTATCATTAAAAGAGCCAGACAAATATATCGACAATGAACTCAGCCATTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="70963" stop="69984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70663" g_stop="70283" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70663" e_stop="70283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGTGTGGATTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTTTAGCTCAATTGAAAGAAGGATACATCAAATGAGACCGGACAAAGCATATTTCACCAAAGTTCTTTTTCACGCATGTTCTTCAACAATATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGGATGCACCGTCTCCGAGATATCAAGTAAAATTTTCATCAGGGGGAGCGCATTATGCGTTGTACTCTTTTTCTTAACTATGGTTTTGTCCCAAGTTGGATTTTCCTGGTAAGGTTTTTAAC</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71480" stop="70117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71180" g_stop="70417" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71180" e_stop="70417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGACAATATCTTGGTGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATTATGCAGAAATAGTAGTCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAAGGTGTGGATTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTTTAGCTCAATTGAAAGAAGGATACATCAAATGAGACCGGACAAAGCATATTTCACCAAAGTTCTTTTTCACGCATGTTCTTCAACAATAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71149" stop="70151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70849" g_stop="70451" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70849" e_stop="70451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGACAATATCTTGGTGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATTATGCAGAAATAGTAGTCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAAGGTGTGGATTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTTTAGCTCAATTGAAAGAAGGATACATCAAATGAGACCGGACAAAGCATATTTCACCAAAGTTCTTTTTCACGCATGTTCTTCAACAATATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71453" stop="70283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71153" g_stop="70583" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71153" e_stop="70583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGACAATATCTTGGTGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATTATGCAGAAATAGTAGTCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAAGGTGTGGATTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTTTAGCTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71692" stop="70468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71392" g_stop="70768" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71392" e_stop="70768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAATATCTCGGCAAGACAAAATTTTATCTTGGCCTACAAATTGAGAATTTATCAAATGGAATACTTGTTCATCAATCAACGTA-A-A-AAAAAATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGACAATATCTTGGTGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71634" stop="70493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71342" g_stop="70793" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71342" e_stop="70793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAATATCTCGGCAAGACAAAATTTTATCTTGGCCTACAAATTGAGAATTTATCAAATGGAATACTTGTTCATCAATCAACGTA-A-A-AAAAAATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAAT-CCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71732" stop="70498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71432" g_stop="70798" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71432" e_stop="70798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTTCCTGCATTTTCATTAAATGGTCGAGGTCTGAATTTGTTATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAATATCTCGGCAAGACAAAATTTTATCTTGGCCTACAAATTGAGAATTTATCAAATGGAATACTTGTTCATCAATCAACGTA-A-A-AAAAAATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="71692" stop="70520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71392" g_stop="70820" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71392" e_stop="70820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAATATCTCGGCAAGACAAAATTTTATCTTGGCCTACAAATTGAGAATTTATCAAATGGAATACTTGTTCATCAATCAACGTA-A-A-AAAAAATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACAC-AATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATC-TTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="72297" stop="70998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71997" g_stop="71298" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71997" e_stop="71298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAATGCAAAAAGATAAAGATTTTGAGCCAAAATCTATTCACGAATGTAGACAAAGAAATGATTGGCCAAAATGAAAGGATGCAATTCAAGCTGAATTGACTTCACTAGAAAAACGTGAAGTTTTTAGATCAATAATCCGAACACCTAAAGGTATTAAGCCAGTGGGATACAAATGGTTTTTTGTACGTAAATGAAATGAGAAAGGTGAAGTCGTGAGATATAAGGCCTGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCC--------A-G--ATCACCTTCAGATATCTCATAAATCTGACAGTTCATGAAAAACTTGAAATGCGTCTAATGGACATTGTCACAACCTATCTACATGACTAATTGTACTACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGAATTGAAACAATCAGGAAGAATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTTCCTGCATTTTCATTAAATGGTCGAGGTCTGAATTTGTTATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="74060" stop="73079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73747" g_stop="73379" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73747" e_stop="73379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAACTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAACATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGACTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTACACTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACTAAAGGTTTACTAATTTTAATGATTTTATCATTTGACATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="75473" stop="74095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75151" g_stop="74395" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75151" e_stop="74395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGTTATCAGTACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTCTCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTCGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGG-A-T-G-T--TGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGATAATTTGACAGTAAAAGATTCACTTGAATTGTGGACTGATTTAAAGGGGA-ATATGACCACCTAAAGGCAACAATGTTGCCAAGAACTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGTTGTATTAAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGATGAGGACATGTTGAAAAAGACACTTACTTCTTTCCATGCTTCAAATGTGATATTGCAGCAACAATATCGTGAAAAGGG-TTTCAGAAATATTCAGAACTAATTTCATGTCTTTT-GTGGCTGAGCAACATAATGATCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCTATTACTGGAGGCAAATGTGATGGGAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGAATGTGACAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTAT-AAA-A-GATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329963" ref_strand="+" ref_description="SGN-E329963 [cTOD-5-B15]">
      <seq>aaaaaaaaaacaaaataataataataaaaaaaaatcatattttcttttggtgtttgattatttcctttttttaactttcaatctgtgttgatcttgatcttataaggattttagagttgaaagctgagttttgtttgtttctcagtgaattgtggttagagatatggcgtctcagtcagctcgtgttccagctgaaactgtaagcgaaaagaaaaaccttccgaaggaaaataagaaaatgaataatggtgcgaaggttaatgagcctattaaatttggctctcatggtactaaagaaccaattaaggaggaagggaaaaaagttcctgttaccgccctccgaaaggatgcagttgaggactggcctgaacctaagcagatccattctttctacattgtaagatatcgaagatttgaagaccaaaacctgaagcccaaatttgatcaggcagaaaaagagctacagaaaatgaacaaaacaagatttcagcttattgaaaaattgcgagccaggaaggctgaacgatcagagttgtttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="76392" stop="79036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76692" g_stop="76797" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76798" i_stop="77899" i_length="1102">
            <donor d_prob="0.119" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77900" g_stop="78310" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="517" r_length="411" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78311" i_stop="78711" i_length="401">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78712" g_stop="78736" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="542" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E329963" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76692" e_stop="76797"/>
          <exon e_start="77900" e_stop="78310"/>
          <exon e_start="78712" e_stop="78736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACAAAATAATAATAATAAAAAAAAATCATATTTTCTTTTGGTGTTTGATTATTTCCTTTTTTTAACTTTCAATCTGTGTTGATCTTGATCTTATAAGGTAATTGCCTATTTTTGACAATTGAATTTTATTTGGAAATTGAAATGTAACATTATTGAATTACAACAATATTATCAATCTTTTTTTTAGTATTGCATTAAAGCATGTATATAATCTTTATTGTTATTTACGATGTGATTCGTTAATACATTATGGTTGTGTTAAGTTTTTGACAAATATTACATATGAAGTTTAGTGTGAATATCTAGTCGGTCAAGACCTTGCACGTCTAGAAGATGAAAGTAGGGGGAAAAAAAGGGATGTTAAGATTGATGAATAGGCATACCAGGAGAGATAGGATTAGGAAGGAAGATATTTGAAAAAAAAGCGGGAGTGACATCTGTGGTGGATAAGATGAGGGAGGTTAGGTTAAGATAGTTCGAGCTTGTGAATAGGAGATACACATATGCCCTTAGTGAGGAGGCGTGAGAGGTTGGCTATGGTGGGGTACGACGAGAGGTAGAGGTAGGTTGAAGAAGTATTGAGGGGAGAGGATATTAGTCAAGACATAACTTATCTGCAACTTACCAAAGTCATGACCCTATACAGAGGCAGAACCAATATTTTTAATAAGGGGGTTTAATATTTGTAGAAGTAGACACATGAAGTAGTCGAAGGGGGTTCGACATCTACTATACATACATATAAAATTATTTTAACCATGTATAAATACTATAATTTTCCCCGCCCTTTGTACAAGGTAGCTCCGCCGCGGACCCTAGATAGGAAGATATGAAGGTCGGGGATTAGGGTAGAAGGTTAGTATAGTTTGCGAGCATTTTCTAGTTTCCCTTGTTTGTATTGTTATTATGACTCTGCTGCATTGTTATTCTTCAATTTTTATTAGTACTGTATTTCCTTCCGTACTTGATTTTGATATGCTTTACTTGAGTCGGGAACCTCTCTACCTTCACAAGGTATGTGTAAGGCTGCGTACCCTTAAACTACACTTGTGGGATTACACGGTTGTTGTGAATAGGTTCTGTTACTTAGAAACTTTTGTTTACTTTCTCCGTTTGGTGTTCTGTGTCCCCGGGGCACAGTTTTATCATCCAATGAGTTAGTAACTAAGGCTAATATGTTCTGTTTTCGCTTGATTCAGGATTTTAGAGTTGAAGGCTGAGTTTTGTTTGTTTCTCAGTGAATTGTGGTTAGAGATATGGCGTCTCAGTCAGCTCGTGTTCCAGCTGAAACTGTAAGCGAAAAGAAAAACCTTCCGAAGGAAAATAAGAAAATGAATAATGGTGCGAAGGTTAATGAGCCTATTAAATTTGGCTCTCATGGTACTAAAGAACCAATTAAGGAGGAAGGGAAAAAAGTTCCTGTTACCGCCCTCCGAAAGGATGCAGTTGAGGACTGGCCTGAACCTAAGCAGATCCATTCTTTCTACATTGTAAGATATCGAAGATTTGAAGACCAAAACCTGAAGCCCAAATTTGATCAGGCAGAAAAAGAGCTACAGAAAATGAACAAAACAAGATTTCAGCTTATTGAAAAATTGCGAGCCAGGAGGGTAAGTTTTGTCCATAAGTCTTCTTTCAGCTGAACGTTGACATCGTTCGTTGTTCTGTTTAATGTGTTCAGAAGAAATTTAAAACGAGAAATGAAGTCAAAATGGTTGAGTTTTCGAATCATAATCATCCTTTTTCTTCTCCTCTCTTGCTCATTAGGCATACAAGCATTCCAGATATACTATTTTCCTTTAGTATGGTTGATTGCATTGCATAGAACGCTTGCACATTTCCTGCAAGTATCATTTATTTACTTTATCCGTGTGAACCATTGATTTGACATAAAAAATCGATTACGCTAATGATCATGAGACCTTTCATAACTATGTGGTAGTTTGATGGTATCTGTTTACCAAGACTTTGAAAGATTACTCTGGATGAGTCCAAACTTGTGTTTTTGCAGGCTGAACGATCAGAGTTGTTTGGTC</genome_strand>
        <mrna_strand>AAAAAAAAAACAAAATAATAATAATAAAAAAAAATCATATTTTCTTTTGGTGTTTGATTATTTCCTTTTTTTAACTTTCAATCTGTGTTGATCTTGATCTTATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTAGAGTTGAAAGCTGAGTTTTGTTTGTTTCTCAGTGAATTGTGGTTAGAGATATGGCGTCTCAGTCAGCTCGTGTTCCAGCTGAAACTGTAAGCGAAAAGAAAAACCTTCCGAAGGAAAATAAGAAAATGAATAATGGTGCGAAGGTTAATGAGCCTATTAAATTTGGCTCTCATGGTACTAAAGAACCAATTAAGGAGGAAGGGAAAAAAGTTCCTGTTACCGCCCTCCGAAAGGATGCAGTTGAGGACTGGCCTGAACCTAAGCAGATCCATTCTTTCTACATTGTAAGATATCGAAGATTTGAAGACCAAAACCTGAAGCCCAAATTTGATCAGGCAGAAAAAGAGCTACAGAAAATGAACAAAACAAGATTTCAGCTTATTGAAAAATTGCGAGCCAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACGATCAGAGTTGTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219410" ref_strand="+" ref_description="SGN-E219410 [cLEL-11-L21](-)">
      <seq>gcctaaaggtaaagctgtcaagcatcgagcagcacgagcaaaaaacacagaaattcctaaaactatacttaaacgcaaaaaggcgattaactattggctattggctgctcctgctgcgcttgtagttccgctacttcttctagcattctcacatcttctctaggataatatgaaagacaagaagtagagggggggaaacttggtattgcttagagtgttgcaatatcaaggtctattttttgtaatttcaaatcatgcctatcttttttcagtcataatgttgctggtagataaggcattcaagagtaactaagcttgtttgatgttggttggtatagtagtttccagttttgacatttgcttaaagatttttatctttggcattaattgtaaacatctaagttctttatgatccgccgacattctgtttcattggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="80614" stop="81655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80914" g_stop="81355" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="454"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E219410" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80914" e_stop="81355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAAGGTAAAGCTGTCAAGCATCGAGCAGCACGAGCAAAAAACACAGAAATTCCTAAAACTATACTTAAACGCAAAAAGGCGATTAACTATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAACAAA</genome_strand>
        <mrna_strand>GCCTAAAGGTAAAGCTGTCAAGCATCGAGCAGCACGAGCAAAAAACACAGAAATTCCTAAAACTATACTTAAACGCAAAAAGGCGATTAACTATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCCAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCCGCCGACATTCTGTTTCATTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223843" ref_strand="+" ref_description="SGN-E223843 [cLEL-19-O14](-)">
      <seq>gcaaaaaacccagaaattcctaaaactatacttaaacgcaaaaaggcgattaactaattggctattggctgctcctgctgcgcttgtagttccgctacttcttctagcattctcacatcttctctaggataatatgaaagacaagaagtagagggggggaaacttggtattgcttagagtgttgcaatatcaaggtcaattttttgtaatttcaaatcatgcctatcttttttcagtcataatgttgctggtagataaggcattcaagagtaactaagcttgtttgatgttggttggtatagtagtttcaagttttaacatttgcttaaagatttttatctttggcattaattgtaaacatctaagttctttatgatctgcctacattctgtttcattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="80651" stop="81655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80951" g_stop="81355" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="418"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E223843" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80951" e_stop="81355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAAACACAGAAATTCCTAAAACTATACTTAAACGCAAAAAGGCGATTAACT-ATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAACAAA</genome_strand>
        <mrna_strand>GCAAAAAACCCAGAAATTCCTAAAACTATACTTAAACGCAAAAAGGCGATTAACTAATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCAATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTAACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219155" ref_strand="+" ref_description="SGN-E219155 [cLEL-11-L22](-)">
      <seq>aaaaaggcgattaactattggctattggctgctcctgctgcgcttgtagttccgctacttcttctagcattctcacatcttctctaggataatatgaaagacaagaagtagagggggggaaacttggtattgcttagagtgttgcaatatcaaggtctattttttgtaatttcaaatcatgcctatcttttttcagtcataatgttgctggtagataaggcattcaagagtaactaagcttgtttgatgttggttggtatagtagtttcaagttttgacatttgcttaaagatttttatctttggcattaattgtaaacatctaagttctttatgatctgcctacattctgtttcattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="80690" stop="81655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80990" g_stop="81355" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="378"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E219155" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80990" e_stop="81355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCGATTAACTATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAACAAA</genome_strand>
        <mrna_strand>AAAAAGGCGATTAACTATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358811" ref_strand="+" ref_description="SGN-E358811 [cLHT-24-J17]">
      <seq>accaatgtgcgcactacgtgtaccggccatggctgccgccggctttgccgcacaatcgattctcagaagagtagttccctcatttctatctactcgtcccaccactcatgtcggcggagacttcttttccggtacaaacctcatcctccgaacacctctacacccctcagcttttggaatatgcagcctaccacaggctattaagggtgatgctgatattttactgaaaggagtgggagacaagaacaccatcgaagatgtgaaacgtattgttgaactggcaaaacgggcatcattaagacgagaagttttacatactgattttctgactccacctgtattaaaagagtcaatgctcatcttagaaaggttagctgatatcagaatagttgcacaaggaggatacccagaggctgaacgatgccgactctcagttggacacgtggaggcattaacaagtgatccagataatgttgcagccttgagtatttcagggaacttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="82130" stop="85935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82430" g_stop="82599" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82600" i_stop="84972" i_length="2373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84973" g_stop="85082" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="280" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85083" i_stop="85236" i_length="154">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85237" g_stop="85368" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="412" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85369" i_stop="85446" i_length="78">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85447" g_stop="85520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="486" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85521" i_stop="85615" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85616" g_stop="85635" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="506" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E358811" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82430" e_stop="82599"/>
          <exon e_start="84973" e_stop="85082"/>
          <exon e_start="85237" e_stop="85368"/>
          <exon e_start="85447" e_stop="85520"/>
          <exon e_start="85616" e_stop="85635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAGGTATGGAAATTTCTTCATTTCTAGCGTGTCTACTTTTTGATGATTTTGTGTCAATTTGTATGGTAATTTAGCTGAAATAGTTGAGTGCAATGCTACTTACTTGTTAAATGGTGTATCTACTATGGACAGAGGTGGAACCGGAATTTTGCAGCTTCGATTTTAGCCTTTTTGAAGTTATTGAGTTCTAAATTAATAAAGACTATGTATTAAATGAATTTCTTAAGACAAACATAGAGTTTGGGTCAAGGTTACTGTGTTCGGACTTTGAACAAAATGGTATCTAGCTCACTATGGACTAAGTGAAATCAATGACCCAAGTAGTCTTTATAAATATTTCGTTTACTTTCATTTGATTCAAATTGTTAACAAGTTACCCATATGGTTCTTATTATAAGCTTGTGAAGGAACTGGCTAAACTAGCCTATACCAGCCCCGTCATAAGTTAACGGCATGTTGTTAACGCGTTGGAAATAGAAACTGAAAACTCTTATCCTATTTAGGTTATGTTGCTCGTACTCTCCGAAAATGTTGTTGAATCTATAGTAGATCCTCCAAAAATGTACAAGGATACCAATGATTATTGGACTATGCCAGTACACACTTCTGACCTCGTTAGTTGCTGGATCAAAAGGGACGCAGCAAAAGTCAGAAAAGATGGTGGAGAACAGTTCGAACGTGTATCTGGTGGATTATATGGAAAAAATGGAATCAGAGGATTTTTTGAAGGAAAGGAGTGTACAATACAGAAGGTCAAATGGAAAGTAATTACTTCTCTAGGTTTTTGGTGTAAAGAACAGGATATAGAAGAGGAGTTCCATTTAGTGGACTTCGTAGGTTCTCTGTATCTCCTTTTAGTTTTTTCCGTTCTTGTAATAGTTTCTTGGAGGTGGCCAGCATAGCCCTTAATGCTGAGCAATACAAAAAGTTACCAGTTTTTTTAAAAAAATGTACTCTGTTTGGAGAATCTGCCACGAACCTGGAAAATTTTTTGAACCAAAACAACATAATACATAGATACAGTGTATACACCTGCATGTTCCCTAATTCTTTATTAAACTAATTACTTTTACATCTCCATGTTCCTAATTCGTTGTTATGCAAGAAGAACATTAGTGGGCTTGTTGAATATCACAAATCTCACAATTGAAATTACATACAAGAACAACAATGCTTCAATACAGACTAGCTAGGGGTTTATATAATCTTTTTTATAGCAGTGATGGTTTAATCAGCGACACACACCTCGACTTTTCCTTCGGACACCTGTTAGATATTGAGTAAGTTGCTCACTAAGACTTAGGCAAATGAAAGAAATCACTTAGTGTTGGGATTCAAACATTGATCTCCAAGGTATGTAAGACAGGTCTATGTGAAATCCTAATAATCATCTCACTCTATTTGGATCCTTTTATCATTATACTCAATAATTTATCTTTTAGGACAAACTACAAGTTCTCAAAAATTAACAATTCCTTAAGTTCACACTCATACTATCAATACACCTTCAAACTGCTTTGTTATGCGCTACTTGAGCTGAAACAGTCTCTCTACCTCAATAAGGTAGGGGTAAGGTCTGCTTTGTCCAATCTAGTATTGTTGTACATTCATATTAACATTTTTACATTCCTATGACACATCGTATAGATATGTTTGGCCATACATGCCAACACTCACTCACGGGCAACATTGTTAGTCTTTACAATCATAGAATTTTTCCTTTTTTTTTAGCCGTTCATGTGCACTTCACAAGATCAATAGGCTGAAAGCTTTTTGCGCGTATTACCGGCTGGGCCAATTCGGTCACTTGCAGACTAGTATAAGGAAAATATGAGTCTCTTTGAAATTATAGTGACCAAATAAAACCAAGGTGGAAACTTCAAAGTACTATTTTGGTCAACTTTTCTTTTAGCATATATATATATTTTTTTATGACAAGGGAAACCCGCAGCCACTACCCTTTGGGTGCGCACAAGGTAAACCCCACCCCCCTCTTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGACGAGCTCGACCTAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGGCCACCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTCTTTTAGCATATATTTGTCTGTCTCAACTTCCTCATAAAGATCACATGAAACAATGTGTAATAATTTGAGGGCTATTTGGATAAATTTGTTGTTTCTTACATCAGCATAAATTGTTTAGGATTGTAAGATTCCTTGGGAATATCTATTGACCTAAACATTCTACTTTTAGTTTCAAACTTTGATAGCTGATGACCCACATGTTATTGGCCTCTTTCAAAACAGCTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTGGTACATATACATCTACCTGACCAATCACTCCTCTCAATTAACAGTTGAGAAGTCTTGTCTAGTTTTTCAACTCTTTGGTCCTTGTTGTAGAAAAAGCACCAAAACATTGTCCTAAGTCTTAATCTAAACTGATTATCACTTGCGTACTTCTCAGGCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGTTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAGGTTGGACACAGTTTGTTTTACAAAACTAGTTTGAGCAATAAAGCTGCTTGAATTTATATTTACTGTCTCCTTAAACAGGCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGATCCAGATAATGTTGCAGCCTTGAGGTATGTCCTCCTGTAATTGTTCAGTTATGCCTGCTGTTTAATTCGACCAATCAAAAAATCCTCTTTATTATTGTGAAAAATGGTCCTCTGTCCAGTATTTCAGGGAACTTTTCAT</genome_strand>
        <mrna_strand>ACCAATGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGGCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGGGAGACAAGAACACCATCGAAGATGTGAAACGTATTGTTGAACTG..........................................................................................................................................................GCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGATTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTCATCTTAGAAAGGTTAGCTGATATCAGAATAGTTGCACAAGGAGGATACCCAGAG..............................................................................GCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGATCCAGATAATGTTGCAGCCTTGAG...............................................................................................TATTTCAGGGAACTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205012" ref_strand="+" ref_description="SGN-E205012 [cLEC-16-F5]">
      <seq>caatgcgcgcactacgtgtaccggccatggctgccgccggctgggccgcacaatcgattctcagaagagtagttccctcatttctatctactcgtcccaccactcatgtcgtcggagacttcttttccggtacaaacctcatcctccgaacacctctacacccctcagcttttggaatatgcagcctaccacaggctattaagggtgatgctgatattttactgaaaggagtgagagacaagaacaccattgaagatgtgaaacgtattgttgaactggcaaaacgggcatcattaagacgagaagttttacatactgagtttctgactccacctgtattaaaagagtcaatgctagtcttagaaaggttagctgatctcagaatagttgcacaaggaggatacccagaggctgaacgatgccgactctcagttggacacgtggaggcattaacaagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="82132" stop="85797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82432" g_stop="82599" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82600" i_stop="84972" i_length="2373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84973" g_stop="85082" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="278" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85083" i_stop="85236" i_length="154">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85237" g_stop="85368" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="410" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85369" i_stop="85446" i_length="78">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85447" g_stop="85497" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="461" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E205012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82432" e_stop="82599"/>
          <exon e_start="84973" e_stop="85082"/>
          <exon e_start="85237" e_stop="85368"/>
          <exon e_start="85447" e_stop="85497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAGGTATGGAAATTTCTTCATTTCTAGCGTGTCTACTTTTTGATGATTTTGTGTCAATTTGTATGGTAATTTAGCTGAAATAGTTGAGTGCAATGCTACTTACTTGTTAAATGGTGTATCTACTATGGACAGAGGTGGAACCGGAATTTTGCAGCTTCGATTTTAGCCTTTTTGAAGTTATTGAGTTCTAAATTAATAAAGACTATGTATTAAATGAATTTCTTAAGACAAACATAGAGTTTGGGTCAAGGTTACTGTGTTCGGACTTTGAACAAAATGGTATCTAGCTCACTATGGACTAAGTGAAATCAATGACCCAAGTAGTCTTTATAAATATTTCGTTTACTTTCATTTGATTCAAATTGTTAACAAGTTACCCATATGGTTCTTATTATAAGCTTGTGAAGGAACTGGCTAAACTAGCCTATACCAGCCCCGTCATAAGTTAACGGCATGTTGTTAACGCGTTGGAAATAGAAACTGAAAACTCTTATCCTATTTAGGTTATGTTGCTCGTACTCTCCGAAAATGTTGTTGAATCTATAGTAGATCCTCCAAAAATGTACAAGGATACCAATGATTATTGGACTATGCCAGTACACACTTCTGACCTCGTTAGTTGCTGGATCAAAAGGGACGCAGCAAAAGTCAGAAAAGATGGTGGAGAACAGTTCGAACGTGTATCTGGTGGATTATATGGAAAAAATGGAATCAGAGGATTTTTTGAAGGAAAGGAGTGTACAATACAGAAGGTCAAATGGAAAGTAATTACTTCTCTAGGTTTTTGGTGTAAAGAACAGGATATAGAAGAGGAGTTCCATTTAGTGGACTTCGTAGGTTCTCTGTATCTCCTTTTAGTTTTTTCCGTTCTTGTAATAGTTTCTTGGAGGTGGCCAGCATAGCCCTTAATGCTGAGCAATACAAAAAGTTACCAGTTTTTTTAAAAAAATGTACTCTGTTTGGAGAATCTGCCACGAACCTGGAAAATTTTTTGAACCAAAACAACATAATACATAGATACAGTGTATACACCTGCATGTTCCCTAATTCTTTATTAAACTAATTACTTTTACATCTCCATGTTCCTAATTCGTTGTTATGCAAGAAGAACATTAGTGGGCTTGTTGAATATCACAAATCTCACAATTGAAATTACATACAAGAACAACAATGCTTCAATACAGACTAGCTAGGGGTTTATATAATCTTTTTTATAGCAGTGATGGTTTAATCAGCGACACACACCTCGACTTTTCCTTCGGACACCTGTTAGATATTGAGTAAGTTGCTCACTAAGACTTAGGCAAATGAAAGAAATCACTTAGTGTTGGGATTCAAACATTGATCTCCAAGGTATGTAAGACAGGTCTATGTGAAATCCTAATAATCATCTCACTCTATTTGGATCCTTTTATCATTATACTCAATAATTTATCTTTTAGGACAAACTACAAGTTCTCAAAAATTAACAATTCCTTAAGTTCACACTCATACTATCAATACACCTTCAAACTGCTTTGTTATGCGCTACTTGAGCTGAAACAGTCTCTCTACCTCAATAAGGTAGGGGTAAGGTCTGCTTTGTCCAATCTAGTATTGTTGTACATTCATATTAACATTTTTACATTCCTATGACACATCGTATAGATATGTTTGGCCATACATGCCAACACTCACTCACGGGCAACATTGTTAGTCTTTACAATCATAGAATTTTTCCTTTTTTTTTAGCCGTTCATGTGCACTTCACAAGATCAATAGGCTGAAAGCTTTTTGCGCGTATTACCGGCTGGGCCAATTCGGTCACTTGCAGACTAGTATAAGGAAAATATGAGTCTCTTTGAAATTATAGTGACCAAATAAAACCAAGGTGGAAACTTCAAAGTACTATTTTGGTCAACTTTTCTTTTAGCATATATATATATTTTTTTATGACAAGGGAAACCCGCAGCCACTACCCTTTGGGTGCGCACAAGGTAAACCCCACCCCCCTCTTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGACGAGCTCGACCTAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGGCCACCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTCTTTTAGCATATATTTGTCTGTCTCAACTTCCTCATAAAGATCACATGAAACAATGTGTAATAATTTGAGGGCTATTTGGATAAATTTGTTGTTTCTTACATCAGCATAAATTGTTTAGGATTGTAAGATTCCTTGGGAATATCTATTGACCTAAACATTCTACTTTTAGTTTCAAACTTTGATAGCTGATGACCCACATGTTATTGGCCTCTTTCAAAACAGCTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTGGTACATATACATCTACCTGACCAATCACTCCTCTCAATTAACAGTTGAGAAGTCTTGTCTAGTTTTTCAACTCTTTGGTCCTTGTTGTAGAAAAAGCACCAAAACATTGTCCTAAGTCTTAATCTAAACTGATTATCACTTGCGTACTTCTCAGGCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGTTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAGGTTGGACACAGTTTGTTTTACAAAACTAGTTTGAGCAATAAAGCTGCTTGAATTTATATTTACTGTCTCCTTAAACAGGCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGAT</genome_strand>
        <mrna_strand>CAATGCGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTGGGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTG..........................................................................................................................................................GCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGTTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAG..............................................................................GCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746425" ref_strand="+" ref_description="SGN-E746425 [GI|47105537]">
      <seq>ggtgcgcactacgtgtaccggccatggctgccgccggctttgccgcacaatcgattctcagaagagtagttccctcatttctatctactcgtcccaccactcatgtcgtcggagacttcttttccggtacaaacctcatcctccgaacacctctacacccctcagcttttggaatatgcagcctaccacaggctattaagggtgatgctgatattttactgaaaggagtgagagacaagaacaccattgaagatgtgaaacgtattgttgaactggcaaaacgggcatcattaagacgagaagttttacatactgagtttctgactccacctgtattaaaagagtcaatgctagtcttagaaaggctagctgatctcagaatagttgcacaaggaggatacccagaggctgaacgatgccgactctcagttggacacgtggaggcattaacaagtgatccagataatgttgcagccttgagtatttcagggaacttttcatttcaaccttgttctcatggtgatttccttggtgcaatccttggtacagggattgcaaggaataagctgggagatatactcttgcagggtgaaaagggagctcatgttcttgttgttccagaactttctgacttccttatatcagcattggacaaggttggaaatgtttctgtctcttgcaagaagattccattgcttgcccttgaatatgaaccaccaaggtcgaaagtgttacacttatagttcctttgatttcttcccttcatacacaacacatttttatctaggatatttccacttttattttactttttccaggacaaagtcctcaaaatccattgaggcatcattgagacttgatgctgtagctagtgcaggattcaaagtttctcgaactaaaatggccagtttgattagtaatggagatgttcgtgtcaattggagcaccgtgacaaaaagcaatactatcattaagactggagacatgatatcagttagcggagaaggaagacttaaaattggggaaataagctcaacaaggaagggaaagttctctgttgagctcattcggtatttgtaaagcatgaagttatttggcgatattgattccaacaacttaaaggctgctatagatacttatcaagccctcatttgccattccaccgcgctccctaatcaaaggcaacttcataccccagggatattcgaacccaagatctttgattaaagatgaaaaactacttaccattccaccacaactcctggtactcgtttgttaccttaaggtgtaaataattcaagcctagacatctgatatttcaaaaatatatgagtgtaaggagtagagctattaacacaggctggcttggattgagcgggctaaagatttgaacagcctagccaacccaactattcatttgaaagggcctccaaaatactagctcaattgagccctaagcggccgagctagcactaaattgttatttttttcagaaaaatgtatgagttatttttttaggaggaaatcttttaaatgtaattgtgtattattattgttgttttaattgttaaagattaaagaataaaatgtataaaaacctatatccttatttgttaatcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="82136" stop="91427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82435" g_stop="82599" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82600" i_stop="84972" i_length="2373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84973" g_stop="85082" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="275" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85083" i_stop="85236" i_length="154">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85237" g_stop="85368" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="407" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85369" i_stop="85446" i_length="78">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85447" g_stop="85520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="481" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85521" i_stop="85615" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85616" g_stop="85721" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="587" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85722" i_stop="87001" i_length="1280">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87002" g_stop="87070" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="656" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87071" i_stop="87355" i_length="285">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87356" g_stop="87616" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="917" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87617" i_stop="88906" i_length="1290">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88907" g_stop="89006" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1017" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89007" i_stop="90514" i_length="1508">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90515" g_stop="91118" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1621" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1622" polyA_stop="1644"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E746425" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82435" e_stop="82599"/>
          <exon e_start="84973" e_stop="85082"/>
          <exon e_start="85237" e_stop="85368"/>
          <exon e_start="85447" e_stop="85520"/>
          <exon e_start="85616" e_stop="85721"/>
          <exon e_start="87002" e_stop="87070"/>
          <exon e_start="87356" e_stop="87616"/>
          <exon e_start="88907" e_stop="89006"/>
          <exon e_start="90515" e_stop="91118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAGGTATGGAAATTTCTTCATTTCTAGCGTGTCTACTTTTTGATGATTTTGTGTCAATTTGTATGGTAATTTAGCTGAAATAGTTGAGTGCAATGCTACTTACTTGTTAAATGGTGTATCTACTATGGACAGAGGTGGAACCGGAATTTTGCAGCTTCGATTTTAGCCTTTTTGAAGTTATTGAGTTCTAAATTAATAAAGACTATGTATTAAATGAATTTCTTAAGACAAACATAGAGTTTGGGTCAAGGTTACTGTGTTCGGACTTTGAACAAAATGGTATCTAGCTCACTATGGACTAAGTGAAATCAATGACCCAAGTAGTCTTTATAAATATTTCGTTTACTTTCATTTGATTCAAATTGTTAACAAGTTACCCATATGGTTCTTATTATAAGCTTGTGAAGGAACTGGCTAAACTAGCCTATACCAGCCCCGTCATAAGTTAACGGCATGTTGTTAACGCGTTGGAAATAGAAACTGAAAACTCTTATCCTATTTAGGTTATGTTGCTCGTACTCTCCGAAAATGTTGTTGAATCTATAGTAGATCCTCCAAAAATGTACAAGGATACCAATGATTATTGGACTATGCCAGTACACACTTCTGACCTCGTTAGTTGCTGGATCAAAAGGGACGCAGCAAAAGTCAGAAAAGATGGTGGAGAACAGTTCGAACGTGTATCTGGTGGATTATATGGAAAAAATGGAATCAGAGGATTTTTTGAAGGAAAGGAGTGTACAATACAGAAGGTCAAATGGAAAGTAATTACTTCTCTAGGTTTTTGGTGTAAAGAACAGGATATAGAAGAGGAGTTCCATTTAGTGGACTTCGTAGGTTCTCTGTATCTCCTTTTAGTTTTTTCCGTTCTTGTAATAGTTTCTTGGAGGTGGCCAGCATAGCCCTTAATGCTGAGCAATACAAAAAGTTACCAGTTTTTTTAAAAAAATGTACTCTGTTTGGAGAATCTGCCACGAACCTGGAAAATTTTTTGAACCAAAACAACATAATACATAGATACAGTGTATACACCTGCATGTTCCCTAATTCTTTATTAAACTAATTACTTTTACATCTCCATGTTCCTAATTCGTTGTTATGCAAGAAGAACATTAGTGGGCTTGTTGAATATCACAAATCTCACAATTGAAATTACATACAAGAACAACAATGCTTCAATACAGACTAGCTAGGGGTTTATATAATCTTTTTTATAGCAGTGATGGTTTAATCAGCGACACACACCTCGACTTTTCCTTCGGACACCTGTTAGATATTGAGTAAGTTGCTCACTAAGACTTAGGCAAATGAAAGAAATCACTTAGTGTTGGGATTCAAACATTGATCTCCAAGGTATGTAAGACAGGTCTATGTGAAATCCTAATAATCATCTCACTCTATTTGGATCCTTTTATCATTATACTCAATAATTTATCTTTTAGGACAAACTACAAGTTCTCAAAAATTAACAATTCCTTAAGTTCACACTCATACTATCAATACACCTTCAAACTGCTTTGTTATGCGCTACTTGAGCTGAAACAGTCTCTCTACCTCAATAAGGTAGGGGTAAGGTCTGCTTTGTCCAATCTAGTATTGTTGTACATTCATATTAACATTTTTACATTCCTATGACACATCGTATAGATATGTTTGGCCATACATGCCAACACTCACTCACGGGCAACATTGTTAGTCTTTACAATCATAGAATTTTTCCTTTTTTTTTAGCCGTTCATGTGCACTTCACAAGATCAATAGGCTGAAAGCTTTTTGCGCGTATTACCGGCTGGGCCAATTCGGTCACTTGCAGACTAGTATAAGGAAAATATGAGTCTCTTTGAAATTATAGTGACCAAATAAAACCAAGGTGGAAACTTCAAAGTACTATTTTGGTCAACTTTTCTTTTAGCATATATATATATTTTTTTATGACAAGGGAAACCCGCAGCCACTACCCTTTGGGTGCGCACAAGGTAAACCCCACCCCCCTCTTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGACGAGCTCGACCTAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGGCCACCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTCTTTTAGCATATATTTGTCTGTCTCAACTTCCTCATAAAGATCACATGAAACAATGTGTAATAATTTGAGGGCTATTTGGATAAATTTGTTGTTTCTTACATCAGCATAAATTGTTTAGGATTGTAAGATTCCTTGGGAATATCTATTGACCTAAACATTCTACTTTTAGTTTCAAACTTTGATAGCTGATGACCCACATGTTATTGGCCTCTTTCAAAACAGCTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTGGTACATATACATCTACCTGACCAATCACTCCTCTCAATTAACAGTTGAGAAGTCTTGTCTAGTTTTTCAACTCTTTGGTCCTTGTTGTAGAAAAAGCACCAAAACATTGTCCTAAGTCTTAATCTAAACTGATTATCACTTGCGTACTTCTCAGGCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGTTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAGGTTGGACACAGTTTGTTTTACAAAACTAGTTTGAGCAATAAAGCTGCTTGAATTTATATTTACTGTCTCCTTAAACAGGCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGATCCAGATAATGTTGCAGCCTTGAGGTATGTCCTCCTGTAATTGTTCAGTTATGCCTGCTGTTTAATTCGACCAATCAAAAAATCCTCTTTATTATTGTGAAAAATGGTCCTCTGTCCAGTATTTCAGGGAACTTTTCATTTCAACCTTGTTCTCATGGTGATTTCCTTGGTGCAATCCTTGGTACAGGGATTGCAAGGAATAAGCTGGGAGATATACTCTTGCAGGTATTTTGTTTATTTATTTTTTGGAGGTTTTCTATCTCTCTTACAAGTTTTGGCAACACCTAGTTGATTTCATCATTTGTTCGCTTAAAAAAAATATATGTAAAAGAAAGATAGAAGTGACAGAGGGTGATCAATTGTTGATCAAATAGAGGGCTCTTGGGCAGAGAGTTGCGGTCATTACACCTAAGAGAGGATCCACCTCTTTGTAGCTGAGTTATTATGTACTCCCTCTGTTCCATTTTAGTTGGCCCTTATACTAAAAATAGATTTTCTTGTTTACTTGTCAATTTCAGCAAATCAAGAGAGATTATTATTTTCTTCTCATATTAACCTTATCATGGGTAAGTATATGAAGTAATAGTTGTCAAACCTAGATTTTCAAAGGACAATTATAAGGATAATTTAGTAAACAAACTCCTAATAAATAGTTTCTCAAGAGAAATGTCAAATCAACAAGGGCCAAGTAAAATGGAACATAAAAGATGAGTCAGAACTAATATGTGGAGGTAGTGTATGCTTAAGAAGTAAACTTGTTGATCAATACTTTGATATCTAATGACTACTTTGTTTTAGTGTGGAAGTGGTGATTCAAACACCCTCAACGAAATGTAGAAGTAGCACAAAGCTTGTTGAATGAAGCAACATCCAAGATAGATTATTGAAATGTCCCTTCAACACCGAGAACATACTACTAAATTAGCTTAGGCACATAAAAAACTAGAGTATGACAATGCATGTAATTGTGTAAGTCTAGTATAAAATAAAGTGGGAGGAAAACCATGAGGTCTAAGGTTCAAATTCCAGCAGAAGCAAAATACACTAGGTGATCTCTTCCATCTACCTAAACCTTGGGGGTTAGAGTTAGCCGATACTTGTGTTGGTGGAAGTAACTGGTATCTGATGGAATAGTCAAGGTGCCCACAAGTTAGCCTGAATGCTGCCGTCGTAAAAAAATACAAAGAACCAGAGCACAACAAAGAATCCTTGCTTAGCTACTATATAAAAGCAAACTGCCTCCTAAAACAGAAAAATGGTTGAGCTTCTTTGGAGATTGTTAAATGGCTGTTTTAAACTAACATCAAAGTTACGCTTCAGATATTTAAATGTTTCTGAATTTCTGTTCTTTTGAAACTATATTAAATTCTTACTTTCTTTCACACGCTCCGACTAATTTCATGGTGTTGGTCTTGTGTGCGTATTTGTGCAACTGTTGTAACGTATTCCACTTCCCATTTCTTCTACGTGTTGGATTATCCTGAACATCGCTTTCTGATGTTTAGGGTGAAAAGGGAGCTCATGTTCTTGTTGTTCCAGAACTTTCTGACTTCCTTATATCAGCATTGGACAAGGTAACGGTACTTTGCAGATTACTTCCTCTTACAGTATCTTACCAATTCGCCACTAGCTTCTACTAGCCAATTAGAGTGAAATTCTAAGTAATTGTGAATATCAAGGAATACTGTGCTCACTGCCATCATCCACTTTATCACATGATATTACATTGAATTGGAGAATGACTGAGCATGAATTTTCTTCATAAAAAATAGTTGACAGAAATCCCAAAGGAGCGAACAGTCGTAATTTTTTTAAAAAAAATTGGAATAATAAGGCTTCCACTTAATATTTTCTTGTAGGTTGGAAATGTTTCTGTCTCTTGCAAGAAGATTCCATTGCTTGCCCTTGAATATGAACCACCAAGGTCGAAAGTGTTACACTTATAGTTCCTTTGATTTCTTCCCTTCATACACAACACATTTTTATCTAGGATATTTCCACTTTTATTTTACTTTTTCCAGGACAAAGTCCTCAAAATCCATTGAGGCATCATTGAGACTTGATGCTGTAGCTAGTGCAGGATTCAAAGTTTCTCGAACTAAAATGGCCAGTTTGATTAGGTAATCCCCCTCTGTATATTTTTTCTCTGTCCAAAATATTTTGCTTGATGTGTGCTTGGCGTGGTGAATGACTACATAATGATCCTTACATTAGTTATTCGTATATAGATAAATAAAAATGGTTCTTGCCTCAATTTATGAACCACATGCTATCCGTAATCATTGTCATAGATTGGTTAAGCTATCCTTCCCAAAAACAAAGGATCCGCACATAAGCTGTCCTTCCAGTACAGTATGACCTAGAAATTATATATATGGTATTCAAATGGGTCCCTTCTATGAAATTTCTTCAACTTCTCATTGATTCTCACATTGTTTAGGTCTTTTCTATACCCTGTAGGCTTTAAATTTGGGTTCATTTTGATTGTCACCTGCAAAAGAGCGAGGTAATTGAAAAGATCCACAACCTATAATCTTTACTAGGTTCAACATCTGTAACATTGCCATAAACGGAATCTCACTGCATTGCTGTGCATTCTCCCTTATCTCATAAAGGCAAAACTAATTTCTTGAAGGGACTGAAAAGTCTCTTGCTATGGTTTACTGCTTGAGTTGGATGTTTGGAAGGATTTATTTTTCCTTGAAATGGATGCTTGCTCCAAGGCAATCATAAATGGACGATGCCTCTAGGAGAAGCTTTCTGTGTGAGGAAAGGATGCACAAGCATAGACATAGATTAGTTCATGCATTATACTGGTAGAAGATCAGGTGAATAATTAACAACTTGAAGGAAGTTGTTATTTGTTAATCACTTCCTAAAGAAGAAATCAAAAAGAAAAGAAGATCCAGTAATTTATCCAAAAACATATATTATCCACTCTTCGGTGAATGTCAGATCCTCCAAAAATAGTTTATTTTTGAAGAATCCGAGACGGGTGCGGCAACATTTTTGGAGAGTCCGAGCAACTTAGGTTTGCTGTTATAGTCTCAAAAATTGAATGAATCACTAACAATGTGGATAATATGTTTGTTTGTACCCAAGAGTGTGGTCTAATGGTCAATGAAGTTGGAGGAGAACGATGAGGTCTATGGTTTAAATCTTAGCGGAAGCAAAAAATACTAGGTGCTTTTCTTCCACCTGCAAGTCTTTACCAGTAGCTGTGCTAATGGGAGGTAGCAGGTAATCGGTGGAACAGTTGAGCTGCGCTCAAGCTGGCACACATATTACCATCATAGAAAGTGTTAATTTCGTTACAGTTCTATATGTTTTTACTGCTTTGATATTACAGATGTATTTGGCCGAATACATTGTTGCCTAAGTTGATACTGTCTCACTCTATATTGTTTTAGTAATGGAGATGTTCGTGTCAATTGGAGCACCGTGACAAAAAGCAATACTATCATTAAGACTGGAGACATGATATCAGTTAGCGGAGAAGGAAGACTTAAAGTAAGTTACTTCTAATAAAATTCTTCCGTAGTTGGTAAAGTGAATGAATCAGAATGAATTACCCTCCCTTATCGCGTGCCCACGCACACAACAAATAACCTAAGGATAGAAGTAGTCTTTGCTTTAAATTTTATAATGCTTTTTCAGTATTGAGTTAAATATTCTCTTCTCATTGGCTCGTTGGTTGCAGAGGCGGATTTGAAGCTTATGGGTTCCTACAATCAAATATGTATAGATATTTAGAATATTTCAACATACATATACAAGATTTAGGTGAAAGCTACTGGGTTTCCGTGAACCCATAGATACAGGGCTAGATCCACATCTGGTTGGCCGACCAAAAGGACATACTTATCTCTTCCTATAAGTTCTGACGTTGAAATTCCATTTTTTCAGGAGTTCACTTAAAATGTGAACTCCCATTTCCTTAACTACTGGAGTATCCTTTTCCAATATCACTCAACTTAAGTTCATCCAAAAACATTGTTTCAAATTTCAAAGTTCTCTTTAACCTATAAAACAAGGCTAACCAAAAAAAAAGTGACTAGAGAAAAAAGCAAATAGTAAAGCTTTGGTTTAAGTTTTTTGATGCCTTGCTATAATGCCAACTTGTTGACAATTGTTTTTAGATTAATTAGGTGATTGTAATTTAGAGAATTTCTGCAGGATATTCATAGGATAAGTGTTGCAGAAATATGTCTGTTAAGATGGATGGGTGGTGGTACAAGATCAGGAATTATCACATTTGGCTGAAGGTGCAGTAGCACACATGGAGGGATAAAATGAAAAAAAGTCTCGAGATTAGTCATCTCTTAAAATATCAACTTGTAGGTGTGAAACCATGGTAATATAAAGTGTTAAAAGGGACGAGGTAGACATAAAATTAGATGGAACGAATTATCCCAAAGACCTACATCTTCTTGGAATCCATGTAGACTTAGCACAACATATAGAAAAATAGAAGAAAAAACTCTATACATGTGATCTAACTAGTTGTCATTAGTTTGCAAGGAGCCTTTATCTTGTTAGAGATTTGTATGCCAATAGAAAATATAGAGAACTTTTAGTGCCCGAGTACCTTAATCCTCAAACTTTTAGTGCCCGAGTAAAATATCATACAGCGGACACCGCTACTAGTTTGGGATTGAACTTCTTGTTAGAGAATTTTACTTGGGGCAATAGTTAGGTTTGGTTGCAGAATTCTCATTTTTTATGGAGTCTCTCTATCAAGACTTCCTTCAGATAAATGCTTAGTTTGTTTGATGACATGACTTACTTTTCCTGCTTAGTGATTTAATGAAAATGCATACTGCGGATAGTGTGATCAGTGATTTTGGAGGTTTGGTTGTTTATGTTGTGAGAATTACTTGTTGCGAAAACTAGTATATGCAACCAACCAATGCTTAGCTCATTTTGGGGCTTTGAATGATCCGTGTTATATCCTATAGAGAATTGTTAATATGAAATGAGATTGCTGTTTCTGCTGCTAATGGATCTCTTATTCACAGATTGGGGAAATAAGCTCAACAAGGAAGGGAAAGTTCTCTGTTGAGCTCATTCGGTATTTGTAAAGCATGAAGTTATTTGGCGATATTGATTCCAACAACTTAAAGGCTGCTATAGATACTTATCAAGCCCTCATTTGCCATTCCACCGCGCTCCCTAATCAAAGGCAACTTCATACCCCAGGGATATTCGAACCCAAGATCTTTGATTAAAGATGAAAAACTACTTACCATTCCACCACAACTCCTGGTACTCGTTTGTTACCTTAAGGTGTAAATAATTCAAGCCTAGACATCTGATATTTCAAAAATATATGAGTGTAAGGAGTAGAGCTATTAACACAGGCTGGCTTGGATTGAGCGGGCTAAAGATTTGAACAGCCTAGCCAACCCAACTATTCATTTGAAAGGGCCTCCAAAATACTAGCTCAATTGAGCCCTAAGCGGCCGAGCTAGCACTAAATTGTTATTTTTTTCAGAAAAATGTATGAGTTATTTTTTTAGGAGGAAATCTTTTAAATGTAATTGTGTATTATTATTGTTGTTTTAATTGTTAAAGATTAAAGAATAAAATGTATAAAAACCTATATCCTTATTTGTTAATCTT</genome_strand>
        <mrna_strand>GGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTG..........................................................................................................................................................GCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGCTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAG..............................................................................GCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGATCCAGATAATGTTGCAGCCTTGAG...............................................................................................TATTTCAGGGAACTTTTCATTTCAACCTTGTTCTCATGGTGATTTCCTTGGTGCAATCCTTGGTACAGGGATTGCAAGGAATAAGCTGGGAGATATACTCTTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAAGGGAGCTCATGTTCTTGTTGTTCCAGAACTTTCTGACTTCCTTATATCAGCATTGGACAAG.............................................................................................................................................................................................................................................................................................GTTGGAAATGTTTCTGTCTCTTGCAAGAAGATTCCATTGCTTGCCCTTGAATATGAACCACCAAGGTCGAAAGTGTTACACTTATAGTTCCTTTGATTTCTTCCCTTCATACACAACACATTTTTATCTAGGATATTTCCACTTTTATTTTACTTTTTCCAGGACAAAGTCCTCAAAATCCATTGAGGCATCATTGAGACTTGATGCTGTAGCTAGTGCAGGATTCAAAGTTTCTCGAACTAAAATGGCCAGTTTGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGATGTTCGTGTCAATTGGAGCACCGTGACAAAAAGCAATACTATCATTAAGACTGGAGACATGATATCAGTTAGCGGAGAAGGAAGACTTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGAAATAAGCTCAACAAGGAAGGGAAAGTTCTCTGTTGAGCTCATTCGGTATTTGTAAAGCATGAAGTTATTTGGCGATATTGATTCCAACAACTTAAAGGCTGCTATAGATACTTATCAAGCCCTCATTTGCCATTCCACCGCGCTCCCTAATCAAAGGCAACTTCATACCCCAGGGATATTCGAACCCAAGATCTTTGATTAAAGATGAAAAACTACTTACCATTCCACCACAACTCCTGGTACTCGTTTGTTACCTTAAGGTGTAAATAATTCAAGCCTAGACATCTGATATTTCAAAAATATATGAGTGTAAGGAGTAGAGCTATTAACACAGGCTGGCTTGGATTGAGCGGGCTAAAGATTTGAACAGCCTAGCCAACCCAACTATTCATTTGAAAGGGCCTCCAAAATACTAGCTCAATTGAGCCCTAAGCGGCCGAGCTAGCACTAAATTGTTATTTTTTTCAGAAAAATGTATGAGTTATTTTTTTAGGAGGAAATCTTTTAAATGTAATTGTGTATTATTATTGTTGTTTTAATTGTTAAAGATTAAAGAATAAAATGTATAAAAACCTATATCCTTATTTGTTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395451" ref_strand="+" ref_description="SGN-E395451 [TUS-16-B15](-)">
      <seq>atgatttcagttagcggagaaggaagacttaaaattggggaaataagctcaacaaggaagggaaagttctctgttgagctcattcggtatttgtaaagcatgaagttatttggcgatattgattccaacaacttaaaggctgctatagatacttatcaagccctcatttgccattccaccgcgctccctaatcaaaggcaacttcataccccagggatattcgaacccaagatctttgattaaagatgaaaaactacttaccattccaccacaactcctggtactcgtttgttaccttaaggtgtaaataattcaagcctagacatctgatatttcaaaaatatatgagtgtaaggagtagagctattaacacaggctggcttggattgagcgggctaaagatttgaacagcctagccaacccaactattcatttgaaagggcctccaaaatactagctcaattgagccctaagcggccgagctagcactaaattgttatttttttcagaaaaatgtatgagttatttttttaggaggaaatcttttaaatgtaattgtgtattattattgttgttttaattgttaaagattaaagaataaaatgtataaaaacctatatccttatttgttaatcttatatgaagagctaaagccgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="88674" stop="91442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88974" g_stop="89006" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89007" i_stop="90514" i_length="1508">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90515" g_stop="91141" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="660" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E395451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88974" e_stop="89006"/>
          <exon e_start="90515" e_stop="91141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATCAGTTAGCGGAGAAGGAAGACTTAAAGTAAGTTACTTCTAATAAAATTCTTCCGTAGTTGGTAAAGTGAATGAATCAGAATGAATTACCCTCCCTTATCGCGTGCCCACGCACACAACAAATAACCTAAGGATAGAAGTAGTCTTTGCTTTAAATTTTATAATGCTTTTTCAGTATTGAGTTAAATATTCTCTTCTCATTGGCTCGTTGGTTGCAGAGGCGGATTTGAAGCTTATGGGTTCCTACAATCAAATATGTATAGATATTTAGAATATTTCAACATACATATACAAGATTTAGGTGAAAGCTACTGGGTTTCCGTGAACCCATAGATACAGGGCTAGATCCACATCTGGTTGGCCGACCAAAAGGACATACTTATCTCTTCCTATAAGTTCTGACGTTGAAATTCCATTTTTTCAGGAGTTCACTTAAAATGTGAACTCCCATTTCCTTAACTACTGGAGTATCCTTTTCCAATATCACTCAACTTAAGTTCATCCAAAAACATTGTTTCAAATTTCAAAGTTCTCTTTAACCTATAAAACAAGGCTAACCAAAAAAAAAGTGACTAGAGAAAAAAGCAAATAGTAAAGCTTTGGTTTAAGTTTTTTGATGCCTTGCTATAATGCCAACTTGTTGACAATTGTTTTTAGATTAATTAGGTGATTGTAATTTAGAGAATTTCTGCAGGATATTCATAGGATAAGTGTTGCAGAAATATGTCTGTTAAGATGGATGGGTGGTGGTACAAGATCAGGAATTATCACATTTGGCTGAAGGTGCAGTAGCACACATGGAGGGATAAAATGAAAAAAAGTCTCGAGATTAGTCATCTCTTAAAATATCAACTTGTAGGTGTGAAACCATGGTAATATAAAGTGTTAAAAGGGACGAGGTAGACATAAAATTAGATGGAACGAATTATCCCAAAGACCTACATCTTCTTGGAATCCATGTAGACTTAGCACAACATATAGAAAAATAGAAGAAAAAACTCTATACATGTGATCTAACTAGTTGTCATTAGTTTGCAAGGAGCCTTTATCTTGTTAGAGATTTGTATGCCAATAGAAAATATAGAGAACTTTTAGTGCCCGAGTACCTTAATCCTCAAACTTTTAGTGCCCGAGTAAAATATCATACAGCGGACACCGCTACTAGTTTGGGATTGAACTTCTTGTTAGAGAATTTTACTTGGGGCAATAGTTAGGTTTGGTTGCAGAATTCTCATTTTTTATGGAGTCTCTCTATCAAGACTTCCTTCAGATAAATGCTTAGTTTGTTTGATGACATGACTTACTTTTCCTGCTTAGTGATTTAATGAAAATGCATACTGCGGATAGTGTGATCAGTGATTTTGGAGGTTTGGTTGTTTATGTTGTGAGAATTACTTGTTGCGAAAACTAGTATATGCAACCAACCAATGCTTAGCTCATTTTGGGGCTTTGAATGATCCGTGTTATATCCTATAGAGAATTGTTAATATGAAATGAGATTGCTGTTTCTGCTGCTAATGGATCTCTTATTCACAGATTGGGGAAATAAGCTCAACAAGGAAGGGAAAGTTCTCTGTTGAGCTCATTCGGTATTTGTAAAGCATGAAGTTATTTGGCGATATTGATTCCAACAACTTAAAGGCTGCTATAGATACTTATCAAGCCCTCATTTGCCATTCCACCGCGCTCCCTAATCAAAGGCAACTTCATACCCCAGGGATATTCGAACCCAAGATCTTTGATTAAAGATGAAAAACTACTTACCATTCCACCACAACTCCTGGTACTCGTTTGTTACCTTAAGGTGTAAATAATTCAAGCCTAGACATCTGATATTTCAAAAATATATGAGTGTAAGGAGTAGAGCTATTAACACAGGCTGGCTTGGATTGAGCGGGCTAAAGATTTGAACAGCCTAGCCAACCCAACTATTCATTTGAAAGGGCCTCCAAAATACTAGCTCAATTGAGCCCTAAGCGGCCGAGCTAGCACTAAATTGTTATTTTTTTCAGAAAAATGTATGAGTTATTTTTTTAGGAGGAAATCTTTTAAATGTAATTGTGTATTATTATTGTTGTTTTAATTGTTAAAGATTAAAGAATAAAATGTATAAAAACCTATATCCTTATTTGTTAATCTTATATGAAGAGCTAAAGCCGTCAA</genome_strand>
        <mrna_strand>ATGATTTCAGTTAGCGGAGAAGGAAGACTTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGAAATAAGCTCAACAAGGAAGGGAAAGTTCTCTGTTGAGCTCATTCGGTATTTGTAAAGCATGAAGTTATTTGGCGATATTGATTCCAACAACTTAAAGGCTGCTATAGATACTTATCAAGCCCTCATTTGCCATTCCACCGCGCTCCCTAATCAAAGGCAACTTCATACCCCAGGGATATTCGAACCCAAGATCTTTGATTAAAGATGAAAAACTACTTACCATTCCACCACAACTCCTGGTACTCGTTTGTTACCTTAAGGTGTAAATAATTCAAGCCTAGACATCTGATATTTCAAAAATATATGAGTGTAAGGAGTAGAGCTATTAACACAGGCTGGCTTGGATTGAGCGGGCTAAAGATTTGAACAGCCTAGCCAACCCAACTATTCATTTGAAAGGGCCTCCAAAATACTAGCTCAATTGAGCCCTAAGCGGCCGAGCTAGCACTAAATTGTTATTTTTTTCAGAAAAATGTATGAGTTATTTTTTTAGGAGGAAATCTTTTAAATGTAATTGTGTATTATTATTGTTGTTTTAATTGTTAAAGATTAAAGAATAAAATGTATAAAAACCTATATCCTTATTTGTTAATCTTATATGAAGAGCTAAAGCCGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244144" ref_strand="+" ref_description="SGN-E244144 [cLEE-1-E18]">
      <seq>tcaccgaaggatcaatggaggttcatgaaaagattatggagctacagtctcaaatggtatcagaggatgtcaaaggtcacaaagcagaattaactgatatatcaaagaggcatatcagtcgacgcggtttaaatgtggagaaagatgcatgcacatcaaatgacaaagctgcgactttagcaggtcaaatgataagggacagtatgcagcccattgagtgtataccatttcatgaacttatttgcttcaaggatgttgacaatctccaatcagctttggctggtgatccaagaagaagaattcaaattgatctcttgaatatctacaaaattcttaagtgtggatgttgcagcaatagtggtggtacactatcaccatctatgcatgagacatcaataatgtatgcactggctcaagagcatggtgatctcattaatcttcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="99992" stop="93887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99692" g_stop="99673" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99672" i_stop="99041" i_length="632">
            <donor d_prob="0.786" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99040" g_stop="98955" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="106" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98954" i_stop="98351" i_length="604">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98350" g_stop="98261" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="196" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98260" i_stop="96255" i_length="2006">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96254" g_stop="96179" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="272" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96178" i_stop="95411" i_length="768">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95410" g_stop="95283" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="400" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95282" i_stop="94233" i_length="1050">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94232" g_stop="94187" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="446" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E244144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99692" e_stop="99673"/>
          <exon e_start="99040" e_stop="98955"/>
          <exon e_start="98350" e_stop="98261"/>
          <exon e_start="96254" e_stop="96179"/>
          <exon e_start="95410" e_stop="95283"/>
          <exon e_start="94232" e_stop="94187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGAAGGATCAATGGAGGTATAATCACTGCCAGTTCATTTTAAGCAGAAAACCCCTTAATAGTAGTTATAGGAAACAGTGCAAGTATATATGGATTTTATGTTTATAGGAATAAATATGGGAAATTGTAATTGGTCAATGGGACATGTTAATACTTAAGAAAAGGAAAACTAAATACCTGCACACTAAGGGAAAAAAGTTGGAAAGTAGAAGCAGCTAACGAAATGTACTCTCAGTCAGAAAGCATATGAAGAAGCAAACATATTTTATTTTGGAGTTGAAGGAACTGTTTTCATGGTTAGTGAACGTCTTAAAAAGTTTTCCCAGGCATGCAAGCCTTAATGATCTTTTCTTTCTATCCCATCTTTTCTCTTTGGTGATTGAATAAGGTTAAAATGATAAGTAGGTTATTAAATTGACCCTGGGTGAAAAGGCTACTGAGAAATCTCATCTTACAGCAGAAATCAGATACTTTGATTAACTTATCTGTTTGATTTTCCATGTTTATCTTGTAGTGAATGGCCTAAATTTTCTGATACATCTGCAGCAGTTTCATCTTACCATTTTACTTGATGCTACAGCTTAGATCGAGTGAATTCTGATATACTGCTGGGCTCAGTCATTTTATAACTCTCTAGTCATTGCTTCAGGTTCATGAAAAGATTATGGAGCTACAGTCTCAAATGGTATCAGAGGATGTCAAAGGTCACAAAGCAGAATTAACTGATATATCAAAGTATGTGGTGAATACGTAACTGTATGCATTCTATCCTTGCAGCATTGTAAGGATAACTTGACACAATTTGTTGAGTTGTAAGATTTTGTTTCCGCTTTCGGCATGTCATTTGTCCTTGGGCTAGATTTAATATATAGGAGTACCACTTATTGCAAGATAATTGTATTAAGGTTGTTATAGCCATTGGGTTAGGATCTTTTGTAATTTCATGACTGCTTGTTGAAATGCCATTCTCCTGCCAAAAAGAAGTTTGCACTGTGAAGTCTAGATGGTCAATTTATCCATTAATCTGCTCTATAGATTTTGGAACCTTGTGGTTGGTGACTTGGGGTGAAGGTTGCGAGGAAAGTTATGTGTTGAAGCAAGTCAAAGAGGAGGAAAAGAAAAAGTGGAGGGGTTAGTACCCTCCATGTCAGTGTTTGCAGTCATTGGATGTATATGACTTATACTCCACCTAGGGAAGTAAATGCATTAATTTTCTTCTTTACCCTTCCACATAATGGAACCAAACAAGTAGAGATACTTTGGTACAAGTTGTTGTGGTTCTTCTGAATATATCTTAAATCTTTTTCTTCAATTTACTATGTTATGACTTGTGTAACAGGAGGCATATCAGTCGACGCGGTTTAAATGTGGAGAAAGATGCATGCACATCAAATGACAAAGCTGCGACTTTAGCAGGTCAAATGATAAGGTAGGGAGGGGCACATAACCTGTATTCTTCTACCTTTCTATCATTGCTGTGCTTGATAATGGGAATGGCGGGGATTCCTGCTTATCTTGCTTTCCTTTCTGTCCTTTGGAAGAATAAGTCCTTTGTCTAACTACATCATGGTCCCTTTCTATAAGCAGAATATGTTATTTAGCCAGCAGAAGATCATGAATTTGTATAAATTTACCACACGTCTGCTTTAAGATAATGTGTCGGCTACAATGCAGGTTTTGTAAAGAAGCATTAAAAATTAAAAATTAAACATAGACATAGTGATACTGTAAGATGGAACTTTTGGGGCATGACCAAAGGAAAATTAAAAATTCTATTTCTATGTTTTATCTGATTTATGAAAAAACATTTGAACCATTTACACGAGCTTCCTCACTTCGATAGGTTCTAAAATAGCTCTAAGTGTGACAAAGAACGTGAATACATGTGAAAATCTACATATAGAATTATCCTCCTCTGCTCTCTTTTTTTTTTTTTAAAATTGGTAAATTGTATTCATCCAGCATAAGGCTATGCTGGCCACCTCCAAAAAGTTCACAAAAAAAAAGAAAAGAGAGACACTTACAAAGAGCCTAAAAATCTACTAATTGGATTTCCTCTTCTATACTTTGTTCTTTACACCAAAAACCTAGTGAAGTAATAACTTTCCACTTAATCTTCAAAATAGAGGATTCTTTTCCTTCAAATATCCTCTTCTGCCCTCTTATATAGGACTTGTTAGAATGGTAAATAAAAGATGGGGAACTTTGTGTTTCATGAATGTTGTGTACTATTGTTAGAACATTGCCAGAATTATTTGTAAATGTAGGTTGGAATTTGTTAGGTTGTGGAGCCTGATTAATATTCGATGTACTGTCATATATTAATATTCATGCGGTTTAACCTCCGCGGTGAGGTTGCCAGGGGGTTATGGGGGACTCCCGCCCCCCATCCGAAGGAGGGGTTCGGGGGCTTCGCCCCGGCCCAAATTTTAGGCTGCAATATTTATTCTCCATTTATTCTTGGTAACCTAAAATACTCTGAATTATTAATATATATATACCCACCGCCGTGGAAGTTTACTCACGGGGTGTTACCACGAAATATTGGTTTCTCTCTTTCTCTCTCTAGATCTCTCATCTCTTTCTCTTGAAAGTTCTTGTGTTCTTAATTCATCAAGTGTGTGTGTGTGGATTCGATCCTAACAGAATTGTCTTGTTTCATTGTTATCAAAATAGAGGAACATGTTAGGATAATTCATATGATATCATAGAATACTCTTTGCTTGATTGTTCAGAAATATTACTTTGTAGATTTAAGACTCCAATATAAAGAGCGTTCCTTTTACAAGAAAAACTCCTACACAGAGAATCCTTCTTGAAATAACTGGACCTGCTTTTTACAATAAAGATATATAAAGAATCCTTTAGTGTCAACAACTAAGTCAATAGGGGTCCATCAAAAACTACATCTCTACCCTCACAAGGTAGGGGTAAGGCTAGTACACCAACCTCCCACTACTTCTTGTACAGTTTATATACCGGAGGTTTTCGTTAAAAATAAAATTACATTCCTTATCAAGAAAAAAACTTTTGTCGACAGTAACTTAATCCCTAATGACTTCTGTGATGTCCTTCACCACTGTTAATTGTTAGAGCTGTTTAGCATCATTTGCAAAAAATGAGCAAGTTTCATGCCACAATGGTGCTTCTTAATCTAAGTCTCAAAGTTTTAAATTTATTTCGAGTCTGAAAGTCCTGCAAAATTATCTTTTGAAGTCTTACCAAGATATTGTACTTAAGCATTAGAATCTGGAAAAGAAGAACCCAAGAAGTAATGTTATCATGTGCCTTCATGTTCCAGACCATGCGTGATAGTCCTTTGCCTGTATCTATGAAGGTTTATGACTCAATTTTTGGGATGATGATTCCTTTTCAAGAGATAAATTTAAGTTTCTTCACCACTACTTAACTGTTCTTGAATTGGTTACGAAACAGGGACAGTATGCAGCCCATTGAGTGTATACCATTTCATGAACTTATTTGCTTCAAGGATGTTGACAATCTCCAATCAGTTAAGTTCCTGATATTCATTCAAGACATGACCGATCACAGTAGTATGCTGCTATATTTGTCATCTAGACTTCAATCTAAAGACATGTGTGCTTACTTAAGGGTACCTGGTAATTAAAATTTCCTTTGTGCTTCATCTACCTCAATCTTTTTCTCCAGCAAGCACATACTTACCTGGTAGTGTAATTACTATTACTATTTTAAGTGAGAGTTCTTGTAACCTGGTAAACATTGATGCTAATTGCATTATACTATGTTTAATAGATATCTTAACTGTAGCTATCAACTTTGTCATTAGTCAGACCAAGTTTCAGGAATACCTTAATATAGGTTAGATAGTTCAACTTATGGTACTATCAGTAATTCTAAAATAATATGTTTATTACTCGCTTTTGCATTTTCCATAGTTTTCTTTTCTTTTTCTTATTTTACTTGATGATGGTGAGCCAGAAATCAAGGTTATTAAGATAGCATAAGTATAATGTTTTTGTGAATTATAAGTCTAGATCAATTTTTTTTGGCCGTAATTCTTTGATAACAAGGGATAGCGTAGTGGAAATGAACCTTTACATCCAATCATAATGTTGGGTTTGAGTCACCAAGAGAGCAAAATGGGAAAGAACCAGTATTTGGATCCTGCCTTGGGGGGTATGGCTTTGCCATGTCACCTATGTATGTGATTCTTTCAGTTGTATTTAACATCAAAAGTACCATTGTGAAATTACAAGTTGATTCACGGGCTTACAATTGTTTTTATGCTTCTATGTAGGCTTTGGCTGGTGATCCAAGAAGAAGAATTCAAATTGATCTCTTGAATTTCTACAAAATTCTTAAGTGTGGATGTTGCAGCAATAGTGGTGGTACACTATCACCATCTATGCATGAGACATCAATAATGTAAGACTGCTCTGAGCACCTCTACTCATTGTTTACAATGCTTCCCCATTAGAGCTTTTACATGCCAGGTGGCATGTTGCTTAAGTTTGGTCACATGATCATAAACCAAATACAATGCAGACTTGTTTATACTTTCTTCCCTTAATTGATGTGCTATCATTCTAATATTATACTCATCCTGATTAACTAGGCTATTTAGATGGACAATTCACGTCTCCTTTCCAATAGTTTTCTATGCTTTCCTGCCAATGAAAGAAGTGCTGTGAGTATTCTGGGTCTGTAGTCTCATGCAGGGGAAAACATTACCTGTTCTGTTCTTTTCTTCTGCTTGCATCATATTGACTTTGTGTCTGAATATGCATAAATGACTTCAGTTAGGAAAATTTCTCACCGCTGTGAGGTTACATGACTTCTATTTTGGTGTGCGCCATTTGGGATTCAAGTCCAACTGAGCGCACCCGCTCCTGTTATTTTTACATAAATAAAAAGGTTTTACATAAATATTGTTTTTTGGTGATAGATGATGCTTTTGGACTTTCTGCTTTCTATTAAGTATTTCATCCATTTCATTTTGTGTCTTGGTTTGGTATGCATGAAGTTTATGAATGTAAAGAACACTTTTGAATCTTATGGTCTTAAAATAAAGGTGTCTAACCAAAAATGCACCTTGAATATGTGGTTTCAACATGCCATGTCGTTTGGTTAAATTGGAATGAAAAAAAAAACTACTAAATATAGAAGGCGGGTGTCTTTTTTGGGACAAACTTAAAAATAAAGTGAGACAAATTGAAACGGAGGGAGTAGTATTTTCTTAGGGAGAGTCAAGTTCATATAAGGGTAAGTACTCTGAAGGCTGAAGTCAACTTGATATTAATATATTATATATTGGCAACTATTTGTAACTTTAGATTGCATATTTTCTCAAGTGATGAAGCTGATATGCTATATTTTTCTCATTAGAATTATTTTTATATTCAAAATGTTTTTTTTTTTTTTGCATTCACGTGGATTAACAGGAGAGCTGAAGTTGTTTTGAATCCTCTCACACAGGTATACACTGGCTCAAGAGCATGGTGATCTCATTAATCTTCATGAC</genome_strand>
        <mrna_strand>TCACCGAAGGATCAATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGAAAAGATTATGGAGCTACAGTCTCAAATGGTATCAGAGGATGTCAAAGGTCACAAAGCAGAATTAACTGATATATCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATATCAGTCGACGCGGTTTAAATGTGGAGAAAGATGCATGCACATCAAATGACAAAGCTGCGACTTTAGCAGGTCAAATGATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGTATGCAGCCCATTGAGTGTATACCATTTCATGAACTTATTTGCTTCAAGGATGTTGACAATCTCCAATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGCTGGTGATCCAAGAAGAAGAATTCAAATTGATCTCTTGAATATCTACAAAATTCTTAAGTGTGGATGTTGCAGCAATAGTGGTGGTACACTATCACCATCTATGCATGAGACATCAATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACTGGCTCAAGAGCATGGTGATCTCATTAATCTTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273628" ref_strand="+" ref_description="SGN-E273628 [cLEN-6-M23]">
      <seq>ggaattgattaagcattcttttgagcttccgtcttacaagaaatattcagtaaatcggaataatcatgtagaactaaatgctacgagtctaggccatggactatcagaaatgcagaggttgcaggaactatggagatcttgccttatgtgtttatatgaagctggaaggtaccataaagttgcattgctggacttgtatttggaggcattagatcctgagttatacaactccaggttatctaatcatggctgtgatagtgcaaaagataggagcttgttgtcaaataatgataaacttttcaagctacaaaaggctgaggttaccaatcaagtcatccgcaaaatgagggatctaccagctgcgaagctatcccagttgcttaagagttgggagaggttcaccgaaggatcaatggaggttcatgaaaagattatggagctacagtctcaaatggtatcagaggatgtcaaaggtcacaaagcagaattaactgatatatcaaagaggcatatcagtcgacgcggtttaaatgtggagaaagatgcatgcacatcaaatgacaaagctgcgactttagcaagtcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="101563" stop="97965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101263" g_stop="101207" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101206" i_stop="101117" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101116" g_stop="101026" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="148" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101025" i_stop="100251" i_length="775">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100250" g_stop="100051" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="348" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100050" i_stop="99743" i_length="308">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99742" g_stop="99673" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="418" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99672" i_stop="99041" i_length="632">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99040" g_stop="98955" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="504" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98954" i_stop="98351" i_length="604">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98350" g_stop="98265" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="590" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E273628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101263" e_stop="101207"/>
          <exon e_start="101116" e_stop="101026"/>
          <exon e_start="100250" e_stop="100051"/>
          <exon e_start="99742" e_stop="99673"/>
          <exon e_start="99040" e_stop="98955"/>
          <exon e_start="98350" e_stop="98265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGATTAAGCATTCTTTTGAGCTTCCGTCTTACAAGAAATATTCAGTAAATCGGTTTGTAACATAATATGCCCCTTTTTAATGATTAAAAGTGAACATATTAGAGGAGAATGTCTCTAAATAGCCCATGAATCATCTTACCAGGAATAATCATGTAGAACTAAATGCTACGAGTCTAGGCCATGGACTATCAGAAATGCAGAGGTTGCAGGAACTATGGAGATCTTGCCTTATGGTAAGGTTTTATTATTCATTGGGCCTTTACGATTAACATAATTCGTGCTGGTTCCTAATTCAGGCGATGACAAGATTTGGAAAATTATTCCACAACTTTTCAGTGCTCCATGTCTTTTTGTAGGTTACTGTTTTGGTATACTTATTGTATACGGCCGACTTTGGCCTTGTGACTAATGAAATTGTTGCCCATGTTAAAATTTCTCAACAACTTAAAGTTGGAATGACTGCGTCATTTTTAATCAACAAATGTAGCTAAATATATCTGGAAGTAGAAACTGCTTAATTCCTTTGCAACTCTCAGTATCATCATTGAAGTGCTCTAAAAAGTTATGATGTTATCCCGCAGTTGCCCGCTGAACATGTTATCTAATACTGCAGTTATGTAATTGAAACCCCATTCTATATGGTATTAGTTAGTTATTGGTTGAGTTTCAAATAAATGGCTACATCTTTTTTGGATCTTCTTTAATTTTCTCTAGATTCTACTGTTTGGTGTTGACAACCAGAAGAAAGATCAAAGTTTTCTCTTTCATTATTTCTTCCTTCAAGACTTGCCACCCCCTCAATATATGCTATTTCTTCTTCCATTTTTTCTTCTAGATTGTTGGAGTCTCTTACAAATTTTGATCTGACAGCTAATTTCTAATGAATCTCTTTGTTTTTCTACAATTGTTTCTATTTTCTGCCTGAATATTATGGACGTTGAATGAAAAAGCTTGTTATTTGTGCAATATGGGGAAGATTTCTATTTCATGACTAAAATATTGTTTTAGTGTTTATATGAAGCTGGAAGGTACCATAAAGTTGCATTGCTGGACTTGTATTTGGAGGCATTAGATCCTGAGTTATACAACTCCAGGTTATCTAATCATGGCTGTGATAGTGCAAAAGATAGGAGCTTGTTGTCAAATAATGATAAACTTTTCAAGCTACAAAAGGCTGAGGTTACCAATCAAGTCATCCGCAAAATGAGGTAGTTGCAGGTCTTACCCTTATTTCTACACTCAGCATTAACTTGTTCTGTACTTCACCTGGAAAGTAAACTAAGAAATTCCATGCGATTGGAATTTTATTTTAGTACTTCTCTATTCTTTATGGTTGTAAGGAGACAACTACTTCATCCATAGTTAGGTTCTTTAGCAAAAATGGTGTTTGCAGAAAAACTGAAAAGGATTCAGATGATTCCTTGTGTTAATAGTTCCTGTATCTTTTGTCTTATTCCTCCAACCCTTCTCCCCCAACCAAATGTTGCGCATGATGTTTGAGTTTTTGATGAACCAGGGATCTACCAGCTGCGAAGCTATCCCAGTTGCTTAAGAGTTGGGAGAGGTTCACCGAAGGATCAATGGAGGTATAATCACTGCCAGTTCATTTTAAGCAGAAAACCCCTTAATAGTAGTTATAGGAAACAGTGCAAGTATATATGGATTTTATGTTTATAGGAATAAATATGGGAAATTGTAATTGGTCAATGGGACATGTTAATACTTAAGAAAAGGAAAACTAAATACCTGCACACTAAGGGAAAAAAGTTGGAAAGTAGAAGCAGCTAACGAAATGTACTCTCAGTCAGAAAGCATATGAAGAAGCAAACATATTTTATTTTGGAGTTGAAGGAACTGTTTTCATGGTTAGTGAACGTCTTAAAAAGTTTTCCCAGGCATGCAAGCCTTAATGATCTTTTCTTTCTATCCCATCTTTTCTCTTTGGTGATTGAATAAGGTTAAAATGATAAGTAGGTTATTAAATTGACCCTGGGTGAAAAGGCTACTGAGAAATCTCATCTTACAGCAGAAATCAGATACTTTGATTAACTTATCTGTTTGATTTTCCATGTTTATCTTGTAGTGAATGGCCTAAATTTTCTGATACATCTGCAGCAGTTTCATCTTACCATTTTACTTGATGCTACAGCTTAGATCGAGTGAATTCTGATATACTGCTGGGCTCAGTCATTTTATAACTCTCTAGTCATTGCTTCAGGTTCATGAAAAGATTATGGAGCTACAGTCTCAAATGGTATCAGAGGATGTCAAAGGTCACAAAGCAGAATTAACTGATATATCAAAGTATGTGGTGAATACGTAACTGTATGCATTCTATCCTTGCAGCATTGTAAGGATAACTTGACACAATTTGTTGAGTTGTAAGATTTTGTTTCCGCTTTCGGCATGTCATTTGTCCTTGGGCTAGATTTAATATATAGGAGTACCACTTATTGCAAGATAATTGTATTAAGGTTGTTATAGCCATTGGGTTAGGATCTTTTGTAATTTCATGACTGCTTGTTGAAATGCCATTCTCCTGCCAAAAAGAAGTTTGCACTGTGAAGTCTAGATGGTCAATTTATCCATTAATCTGCTCTATAGATTTTGGAACCTTGTGGTTGGTGACTTGGGGTGAAGGTTGCGAGGAAAGTTATGTGTTGAAGCAAGTCAAAGAGGAGGAAAAGAAAAAGTGGAGGGGTTAGTACCCTCCATGTCAGTGTTTGCAGTCATTGGATGTATATGACTTATACTCCACCTAGGGAAGTAAATGCATTAATTTTCTTCTTTACCCTTCCACATAATGGAACCAAACAAGTAGAGATACTTTGGTACAAGTTGTTGTGGTTCTTCTGAATATATCTTAAATCTTTTTCTTCAATTTACTATGTTATGACTTGTGTAACAGGAGGCATATCAGTCGACGCGGTTTAAATGTGGAGAAAGATGCATGCACATCAAATGACAAAGCTGCGACTTTAGCAGGTCAAATGA</genome_strand>
        <mrna_strand>GGAATTGATTAAGCATTCTTTTGAGCTTCCGTCTTACAAGAAATATTCAGTAAATCG..........................................................................................GAATAATCATGTAGAACTAAATGCTACGAGTCTAGGCCATGGACTATCAGAAATGCAGAGGTTGCAGGAACTATGGAGATCTTGCCTTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATATGAAGCTGGAAGGTACCATAAAGTTGCATTGCTGGACTTGTATTTGGAGGCATTAGATCCTGAGTTATACAACTCCAGGTTATCTAATCATGGCTGTGATAGTGCAAAAGATAGGAGCTTGTTGTCAAATAATGATAAACTTTTCAAGCTACAAAAGGCTGAGGTTACCAATCAAGTCATCCGCAAAATGAG....................................................................................................................................................................................................................................................................................................................GGATCTACCAGCTGCGAAGCTATCCCAGTTGCTTAAGAGTTGGGAGAGGTTCACCGAAGGATCAATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGAAAAGATTATGGAGCTACAGTCTCAAATGGTATCAGAGGATGTCAAAGGTCACAAAGCAGAATTAACTGATATATCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATATCAGTCGACGCGGTTTAAATGTGGAGAAAGATGCATGCACATCAAATGACAAAGCTGCGACTTTAGCAAGTCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318907" ref_strand="+" ref_description="SGN-E318907 [cTOB-11-J11]">
      <seq>ttcttttcgcgcgctcatcagcagccaataagccaacagttgcctctgaccggagcagcaatactcaccggagaagagatcgccggcgaccagcaagcagtgtgtaatatcacaactatcttctgacagcagagagaaagaactgagtgactggcttgctgggtgaagtgcattcaccaaatgaacatgcttttacaaacccgcttgcagaaaacaatcttcagccattcttcgtgctgcacaaggcatcaaagtcttcagagtctactgcagtaactcctggaagatccactaaaagaagacttgactcttcatcaaaagtatgattaagcgatgagaacttgaaaatggaagctttccgatgtgtatggtcaaaaatcgaatccaagattaaggatgtcttgaggagtataaatgccggcgtgtttgatgagataggacaatgggttcgtgaatcttttaatgaaatttgttcgtgcagagggcctgttgatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="106768" stop="104817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106468" g_stop="106305" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106304" i_stop="105663" i_length="642">
            <donor d_prob="0.000" d_score="0.76"/>
            <acceptor a_prob="0.897" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105662" g_stop="105604" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="224" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105603" i_stop="105508" i_length="96">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105507" g_stop="105337" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="395" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105336" i_stop="105221" i_length="116">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105220" g_stop="105117" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="499" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E318907" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106468" e_stop="106305"/>
          <exon e_start="105662" e_stop="105604"/>
          <exon e_start="105507" e_stop="105337"/>
          <exon e_start="105220" e_stop="105117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCGCGCGCTCAGCAGCAGCCAATAAGCCAACAATTGCCTCTCACCGGAGCAGCAATACTCACCGGAGAAGAGATCGCCGGCGACCAGCAAGCAGTGTAT-CTATCA-GTCTATCTTCTCAGCACCAGTAGGAAAAAACTGTGTTTCTGGCTTGCTGTCTGGTAGTGTTCTTTTTTTTTGGATTGTGTTGTTGAGTGATGCTACTACTGCTAGAAATGATTGATTTTTGACTCTATTGAATGTATTAGCTTCATGTTAAGTTAAATGTTATGATAATTTTGTTCTCATTTTATTTCTCACTTGCACCGAAAAAAAGTTTGAACTTTTACATTACCAAACTGAAGAACTGAATACCCATCACTAGCAGAAACCAGAAATTGCCACATTTGATTATTTTGCGTGCTGTTAGTTTCTGACTTCTCGCTCGGTTTGATTGTTTGAATGCTCATTATTGTTTTGTTTGTGCATGTTGTAATTTCAGAAAGCAAAAAACCGAATAAGAAATTGTGATTCAGTTCAGTTTCGGTTAACATTTTCACCAATCGAAAACTGAGAAACCAAACTGAACTGACTGAATGCCAGTCCTAGTTGTCACCCTTCTTTCAAGAAAAAAATGTTACTTGATAGCTCTTTCCTTCATTTAATATTGTACTGAAATCAATACTTGTTATTGATTTAGTGTGGTGGTTGTTGTCTAACTTGTTACTTAATTCATTTGTTGTAGCCTTGAGGTCACTGTTAACTATAGTAGACTTTTAGCTAGCTTACTCTAATCCTGAATACTGATGTCTACTCTCTTTTAGAAATGTATTCACCAAATGAACATCCTCTTACAGACCCGCTTGCAGAAAACAATCTTCAGGTTCATAGCAATACTACTTTATCCATTTTTTTTTGTAAATATTTTGTTTAGAGAATGTAACTGCTTTTGGATGTTTGCTCCTGTGGAAATTCATAGCCATTCTTCGTGCTGCACAAGGCATCAAAGTCTTCAGAGTCTACTGCAGTAACTCCTGGAAGATCCACTAAAAGAAGACTTGACTCTTCATCAAAAGTATCATTAAGCAATGAGAACTTGAAAATGGAAGCTTTCCGATGTGTATGGTCAAAAATCGAATCCAAGATTAAGGTTCTTCTTTCCCGATTTTGTTCCTGAAATGTTATAGATATTTTCGTTGATCCAATTCAGTGTAAATTAAGTGATGCTAAATTGCTTATTTCTTGATGTTTGAGAATTGAATTTAGGATGTCTTGAGGAGTATAAATGCCGGCGTGTTTGATGAGATAGGACAATGGGTTCGTGAATCTTTTAATGAAATTTGTTCGTGCAGAGGGCCTGTTGATCCATC</genome_strand>
        <mrna_strand>TTCTTTTCGCGCGCTCATCAGCAGCCAATAAGCCAACAGTTGCCTCTGACCGGAGCAGCAATACTCACCGGAGAAGAGATCGCCGGCGACCAGCAAGCAGTGTGTAATATCACAACTATCTTCTGA-CAGCAGAGAGAAAGAACTGAGTGACTGGCTTGCTGGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCATTCACCAAATGAACATGCTTTTACAAACCCGCTTGCAGAAAACAATCTTCAG................................................................................................CCATTCTTCGTGCTGCACAAGGCATCAAAGTCTTCAGAGTCTACTGCAGTAACTCCTGGAAGATCCACTAAAAGAAGACTTGACTCTTCATCAAAAGTATGATTAAGCGATGAGAACTTGAAAATGGAAGCTTTCCGATGTGTATGGTCAAAAATCGAATCCAAGATTAAG....................................................................................................................GATGTCTTGAGGAGTATAAATGCCGGCGTGTTTGATGAGATAGGACAATGGGTTCGTGAATCTTTTAATGAAATTTGTTCGTGCAGAGGGCCTGTTGATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365474" ref_strand="+" ref_description="SGN-E365474 [cLPT-2-H3]">
      <seq>tgaatcacttctctgttctcacttcttttcgcgcgctcagcagcagccaataagccaacaattgcctctcaccggagcagcaattctcaccggagaagaaatcgccggcgaccagcaagcagtgtatctatcagtctatcttctctgcacaagtaggaaaaagctgtgtttctggcttgctgtctgaaatgtattcaccaaatgaacatcctcccacagacccgcttgcagaaaacaatcttcagccattcttcgtgctgcacaaggcatcaaagtcttcagagtctactgcagtaactcctggaagagccactaaaagaagacttgactcatcatcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="106790" stop="105112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106490" g_stop="106305" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106304" i_stop="105663" i_length="642">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105662" g_stop="105604" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105603" i_stop="105508" i_length="96">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105507" g_stop="105412" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="341" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E365474" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106490" e_stop="106305"/>
          <exon e_start="105662" e_stop="105604"/>
          <exon e_start="105507" e_stop="105412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCACTTTTCTGTTCTCACTTCTTTTCGCGCGCTCAGCAGCAGCCAATAAGCCAACAATTGCCTCTCACCGGAGCAGCAATACTCACCGGAGAAGAGATCGCCGGCGACCAGCAAGCAGTGTATCTATCAGTCTATCTTCTCAGCACCAGTAGGAAAAAACTGTGTTTCTGGCTTGCTGTCTGGTAGTGTTCTTTTTTTTTGGATTGTGTTGTTGAGTGATGCTACTACTGCTAGAAATGATTGATTTTTGACTCTATTGAATGTATTAGCTTCATGTTAAGTTAAATGTTATGATAATTTTGTTCTCATTTTATTTCTCACTTGCACCGAAAAAAAGTTTGAACTTTTACATTACCAAACTGAAGAACTGAATACCCATCACTAGCAGAAACCAGAAATTGCCACATTTGATTATTTTGCGTGCTGTTAGTTTCTGACTTCTCGCTCGGTTTGATTGTTTGAATGCTCATTATTGTTTTGTTTGTGCATGTTGTAATTTCAGAAAGCAAAAAACCGAATAAGAAATTGTGATTCAGTTCAGTTTCGGTTAACATTTTCACCAATCGAAAACTGAGAAACCAAACTGAACTGACTGAATGCCAGTCCTAGTTGTCACCCTTCTTTCAAGAAAAAAATGTTACTTGATAGCTCTTTCCTTCATTTAATATTGTACTGAAATCAATACTTGTTATTGATTTAGTGTGGTGGTTGTTGTCTAACTTGTTACTTAATTCATTTGTTGTAGCCTTGAGGTCACTGTTAACTATAGTAGACTTTTAGCTAGCTTACTCTAATCCTGAATACTGATGTCTACTCTCTTTTAGAAATGTATTCACCAAATGAACATCCTCTTACAGACCCGCTTGCAGAAAACAATCTTCAGGTTCATAGCAATACTACTTTATCCATTTTTTTTTGTAAATATTTTGTTTAGAGAATGTAACTGCTTTTGGATGTTTGCTCCTGTGGAAATTCATAGCCATTCTTCGTGCTGCACAAGGCATCAAAGTCTTCAGAGTCTACTGCAGTAACTCCTGGAAGATCCACTAAAAGAAGACTTGACTCTTCATCAAAA</genome_strand>
        <mrna_strand>TGAATCACTTCTCTGTTCTCACTTCTTTTCGCGCGCTCAGCAGCAGCCAATAAGCCAACAATTGCCTCTCACCGGAGCAGCAATTCTCACCGGAGAAGAAATCGCCGGCGACCAGCAAGCAGTGTATCTATCAGTCTATCTTCTCTGCACAAGTAGGAAAAAGCTGTGTTTCTGGCTTGCTGTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTATTCACCAAATGAACATCCTCCCACAGACCCGCTTGCAGAAAACAATCTTCAG................................................................................................CCATTCTTCGTGCTGCACAAGGCATCAAAGTCTTCAGAGTCTACTGCAGTAACTCCTGGAAGAGCCACTAAAAGAAGACTTGACTCATCATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702799" ref_strand="+" ref_description="SGN-E702799 [FA19CH10]">
      <seq>aatacgcctatctccctctttatccttttttccatcttcttcttcttcttcaactagttgaatgtttgagcaatgtctcgaggcactgatcgcttactgaagaatttgaagcaattcactgaccttcaatacaagtacttcagtagccgctatggacagcaactcattgacattttcgaatttccaataaagcttgttctttcacctattacacttgcatatgacattgccggctctgctccgagaggtttcggtgtacctgaattcatctctaagctctcttattcgaccatctttgtggtagctactctgggtacttatgacattgcaatggagctcggaaagaaggtgatcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatagctgataacagagctgagttggtgcatcttccttccacagtggaccttcacttgccactgccatctaaagaatgtcccagttgtgatggatcgggtgtgatgaaatgcccggaatgcaaagacaaactgcagataaagatatctgcagatgatattatggagcctccttggaaagcttataatatcatgaggaagatggattatccttacgagcatattgttgatagtatgaaggaccccagcatgctgcattttggttgcttaccttgcctcagattgtgggtggatttgaatatgatgatgatgtcaagaagaagatttggtggcaatataaggaatctatgcgatatgatcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="107697" stop="116056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107997" g_stop="108293" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109299" g_stop="109363" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="362" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="461" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110408" g_stop="110540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="594" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111704" g_stop="111763" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="654" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112846" g_stop="112905" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="714" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112906" i_stop="113374" i_length="469">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113375" g_stop="113497" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="836" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113498" i_stop="115732" i_length="2235">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115733" g_stop="115756" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="860" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E702799" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107997" e_stop="108293"/>
          <exon e_start="109299" e_stop="109363"/>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110540"/>
          <exon e_start="111704" e_stop="111763"/>
          <exon e_start="112846" e_stop="112905"/>
          <exon e_start="113375" e_stop="113497"/>
          <exon e_start="115733" e_stop="115756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGCCTATCTCCCTCTTTATCCTTTTTTCCATCTTCTTCTTCTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTTGTAAGTTCACCGCACTTTCTTGTATGTAATTGGGGAAGTGTTACTTTCTGTTTTTTTTTTTTTTTACTTAATGGTCGTTAAGTGTTTGTTTATATGTCACTGAGAGGATGTGAATGGGATAGTATGTTTGATAGAATTTCTGAACTGGGTGTTTAAATTTATGTTTGTGTTTCACTGAAAAGGCCTTGAACGGGGAAGGTAGTTTTCAGTGTTTTATGAACTGGATTCGTTAAGTGTTTGTTTATATGTTACTGAGAGACCAGGAATGTGACAGTCTATTTGTTAGTATTTTTGAATTGGGTCTTCAAATGTATGTTCACGTGTCACTGAAAAGGCTTCGAATGGGGGATCGGTTTGCCGGTGTTTTATGAATATGAGTGTAAATGTCACTGTAAGCTCACCGGACTTTATTGTCCATTGCTGGAGAAGCATAATTGTCTGCATCTCTTCCTGGATTTGGTCTTTGTTCATATGTCACTAAGAGACCATGAATGGGACAGTCTAGTTGTTAAATTTCTGAATTGGGTCTTCCAATATATGTTCATGTTTCACTGAAAGGCCTTGAATGGGGGAACCAATGGTCAGTGTCTTATGAACTGGGCTTTAATTTAGTTGTTCATAAATCACTGGAAGCTCACCACACTTTCTCGTCCATAACTTGAGAAGCATTGTTGTCTGCATTTCTTCCTGATTTGGGTCTTTATATGTTTGTTCATAGGTCACTGAGAGACCATGAATGGAACAGTCTAGTTGTTAGAATTTCTGAACTGGGTATTCAATATATGTTCATGTTTCACTGGAATGCCTCGACTGTGTCTTTGAATGTTTGTTCATATATCACTAGGATCCCATGAATAGGAAGTTTTTTTCAGCATTCCCTGGATTGAGTCTTCAAGTAATATGTAAGAGAGGTGATGACCGGAGATTAATACAACGACTTTTAGGCTGAAAGTATTTGTTCAGTGAAGGTTTCTCCTAACAGAGATATTTGGTGTTTTACTGCAGGTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAGGTGCCCTTATAGTCTTAGCTCATGTTTACTTTTGTTAGAATTTATATTCCTGAAGTTGAAGTGTCTTATATTAGAAATAATGAAATTGATAAATGGTCCATGTCAAAAGTTTTGTTTTTTTGCTGATATGCACATCGTGTGTAAAAGGGCATCGAAGATTAAAGGTATCAGGCAACTCCATCCATTACCTTAAGGAATAGGTTTGAATGCTCACATTCTTTCATAGGTTTGGTTTTTCAATCCATATTTTACTTTAAATGGACTATGAGCTCGATAGATATCAGATATTTGTCTTATAGATATCAGATATTTGTCTTCTGTGCTCATTGGTGGTCTCGATGTCCTTATGCACAAGCTGATGTGGTAATCACAAATTGAAGTTAAAGTGAGAGAGCATCTTATTTGTGCTTACTGAAGGGAAGCTGAAATGCTTGTCAAATTTATAGTCAACTGGCATGTCTTGATATGTAAGGTGATGACATGTGTAATTGAAAGAAGATGCTTGGTTCATTGACTGCAGGGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCGGTGAGAACTGTTTTGGCAATTTTTTCAAATTTCATAATATAGCTTCTTAAGGGCTGAAAATAAACTGAGTGAGTCATGCCAGTAGTTCTTTTGGCTTGAGAAACCATCCAAAATGCCAAGGTAAAGATATAGAGTTTCATTTGTTATGGAAAGCCAAGTTGAGAATAGGGCTTATTGAATAAGTAAAGCCAAGCCTAACCAGAAATCAACTTGGCTCATGTTATTTATGTGGCATGTATCTGTAGTTTCATTCAGTGTTGTCAAAGGCTCGCCTGAAGCATGTTAAGACCTGAAGCGACGCACAAAACATGCTGAGCACTTTGCCTCGCTTAGTGGGCGCTTCAGTGTAGTGATTGAGGCTTCAAGGCATACTTGATACTTCTCCCTATCAATGAGTGTTATCCTGAAGAGGCAACATTACACAATTATTATTTACTTTATCTTAATTTCTTTTTCCATTGATTTGTTATTCATGCTTTAGAATTATTAGTCTTTGACTGCACATATATTATTGTATTTTTTTTCTTTATTCTTAAATGTCTGACTGACCTTAAAGCTTTTTGTGCTTTTCGCCTTTGACAACACTGCCTTCATTTGATTTTAACTGTATCTTCCCATGCTTCTACTAGTTAATAGGTAATATTTGTTAGTTGATATGACTTTGAAGACGACTTAGAAGCACGTAAGTTCAATCACTTAGGTAATTAGGTTGAATCCTGCACAAGAACCCATAGCCCTAGCTCATGAAGATAGTTTTCCGATAATCTAGAACCAGACCTTTATGTGTAACCTGATTTGAGCTTTGATATCACCTCGATATGCATGATGGAACCTGAGTGGTTTTGGAGCTCATCCTATTATTCAGTAATCTTGTTAAATAGAGGCTGTTTTGATACTATATCAATGAATTTGGATTATGCATGATGCTTCCTTTTAGTCTAGTATGTTATGAGTTAAGAACTGTATTATTTTCTTGCACACACAAGCTTCATTATTTCCTTTAGTTGGATTTGTGTCAATTGTGTTAAATCTGGATGCAGTCATTATGCTTCACATGATCTTTGATATCCACCTATGCCTAGTCTTAACTCTTAAGTAAGAACTGTTCAAACTTTTTGGAACTTAAGCAATGGCTGTTGCTAATGATACCACTTATTCTGCAGGGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGATGTGAGTTCTATCCAGTCTTTCCTGTTCTTTGTTCCATTTTCTTTTTCTACTTTTTAAAAACCATTGAGATTTTCTTTTACATTATGCTAATATATTTACCATCGAGAGTTATTTCTAACATCATGCAATATATTGGGTACTATATTAGAATCATAACGGCACTGACTTAGTGGTCAATGAAGTGAGTGCAAACTGCAAACCTTAGAGACCATAGTTCAAAGCCCCGTAGAGGCAGAAAACACTACATGCTCTTTTCCCTCTTCCCAAGCCTTGACAGGCAGAGTTACCTAATACATGTTCTTGTGAGAAAAATCCATCGGAATAGTTGAGGTGCACAAGCTGGCCCGGACGCCACCATTATAAACAAAAACAAAAAAGGAAGAAGAATTCTAGTGGCAGTGGATTTTGCTTCTCAATTTTTTTTAAATGCACCTTCCTGATCTTTCATTTTCTAGTCATTTCATAGAAACAGTGTGTGATATTTTGATTATATTTTTGACACACTTAGAATTCTAGTCATAACCCTTTCCTACTCATGCTAAAACTTAGAGACTGTGAAAACCTGCAGCCTGTCACGAGGTCTGCTTCCATTAGTGAAGAGTTTTATCTTGGGAAACTATTTCATTTGTTTCGCTCATCCATTTCATATGCCTCTAGATAAAGTAAAAGTGTATGAACAAGAATTGGTATCTATGCTAAATTTCGTCACAGTTGATAGATGTTCATGTAAAAGGTTTCTATGTGCATAAATCTGTTCCACTATATTGATTAATGCCGTTAAAATGGAGTATGGAAAAATATTGGTATCTGCAAACAAGAGGAGGTAATCAGAAATGAGTCATAAAAACACATCCATGGGGAAAACCTAGAAATCTAGTGAACCAGGAATAGTTTTCTACACTCTTGAGTATGGTAAAGAGGAATGGCAAATAAAATGAACACTAAATAATGTCCTTTTTTCCCATTTGTATTCTTGATGTCGTGAATTTTCATTCTAGGAAGAATTTTTTTTCCTCCTTTTCTTTCGGTTTTGATTTACCTTTTAGTCATTCTCATGTCTGTGTAATCTTTCAATGCTACAGATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTCTATTCATTGCCTACTCCCCAGTAGATATTTGTGATCATCCTATTCACCAGATTGTCTTGCTTATAAGTGTGTGAGTTCTCAAATATTTTCTATAGAAAAGTCAAGTATAAGAAGCCCCTTACAACTTTGCACTTTATCATTTTCCTCTTCTTTACTGTTACAGCATATTGTTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGGTTGCTTACCTTGCCTCAGATTGTGGGTGGATTTGAATATGATGATGATGTCAAGAAGAAGATTTGGTGGCAATATAAGGTTTACTTTTATCTTATGGTTGTCAAAGACTGCTTTTTTCCCCTTGCTATTCATAATTGCTCAGTTATTTTGTGAATGTTGAGCATTTTACAGAGCCCATAACACATGCTTTAGTATCTGTAAATTTTGAACTCTATTATTGCACACATTGAAACAGGAAATAAAAAGAAGAGGCGAACTCTATATTAATCAGATAAATATGCTCACCCTATTTCAAGTGCACCAGAAACAAACTTGAACTGATTAGCAACCTATTTAACTTTGATTAATATGGAAGTTACTCACATCAGCAAAGGATGAGATGCTAAAAAAAAAGGAAGAAACTTACAATCGAATTCAACTTCCTAATGCCGCTCCTCCAGGTAGTGCATTAGAGAACTTCTAAGTAACCAATGCTATCCTGTCAAAATCCAAAGTATACCTTTTTTATTTTTGTCTTCTGGCTTCTTTTATCCCTAAAGCTGAAAAAGAGTTTGCAAGATTGAAGGGGATGACACCGAACTCATGTAACTCAATTTATACCAATTACTAATGAAAATTTTCAACACGCTTTATTGGTAGAATGAGGTTTTTGCACAAGTATACACAGGAAATTTCTGAACTTGCAATAAGATTGAAAGCTAAGTTGCGCGGACTCTTCACTTTCGATGTCGCACCCGTGTCAGATTCTCCAAAAATATGCTACTTTTGGAGAATCTCATACACACCCGTTGACATTTTTGAAGGGTTCGAGCAAACATAGATTGAAAGTAATCTATGGAATCTTCTCAAAATATCCAAGTTCAAGTCACATGATTTGTTAAGGTTTCCTTTTTTAATGCTCAAAAGAAAATTTTGGAATCAGCTTAACATCAAGAGAGTTCATCATCTAGTTGATTGTGAATCTAGGACTTGTACATAGAGCTACATACCAATGCCCTGTGGTCAATGTATTCACTTCCTTGTAGTTTCTTTGGCAACCTTTCCCTTTTAGTTTGTTCCTTTAAGAATGACAACTTTCTAAATTAGGAAATGATTGAAGAAGTACTTCCAATGTACCTTTAATGAGAAGATTTTATAGCCACACATGTTATGGAATTTTTAAAACCACAGGCTTCTAAAGCCTTAAAGCCACACAAATCTTAAATTTTGAGACATGGTTATGATCATCAGTCTCAAAAATCTTCCTTTCTTAAAGTCCATTCCTATTCAAATTGCCACAAAAATTGGAATGGCGGGAGTTCAATTTTGTGCTGTTTGATTTCAAAATGCTTCATATTCTTTTTCTTTCTGTGTAAACATGCTTCATCTAAGTTCACTCTGGTAAAAATTGAACAATGATATATTGGCAAGGAACAGCGGCTGAGCCACGTGTAAAGAAGGGAATTCAATTGAATCCCCTTCATCCAAAAATTAATCTTTGCAATAGGATAAAAGCAATTTTCTGTATGCATATAACTTTTTGAATCCCTGTGAAAGAAAAAGAGCTTCCAGTGTAATGGAAAATGTAGATAAAAAATTATTTTTACATTTTTGACTCTTTGTTATAGTTCATGGCCCTGTCAATGGTAAAAGAAGTTCATGCTTCATAATCATATATGTTCTATTCAGATGATTATTTTATCTCGAAATTCTTATGCAAAGATTAACTGTGGTAGAGTTTCAACCTAAGTCCCAGTAAGCCTTATCCTATTGCTGGGTTCGGATACAGGAAGTCAGGAACCCATTTGCTTTATTCAGCTTTATCTACAAACATCCGCCACTCGATGTCAAGTAACAGGTCTTTTATTGATGTCTCTGTTGTTTTTCTCATCCTCTTCCCTCCTTTTAAGGATTTATGTACCACAATTCCCTTCAATCTGCATAATCAAAGTTCTTTTAGCTATTGCGGAATCTCACAATACAAGCCTTGTACAATTGGCTGTGACGTTCAGAGAAAAGCCATTTCGACTGTTAAACTCATTGAAGAGATGACTTTTGAGTTTTCATCTATGATTATAATGAAGTTCTGAAGTTGTCTTCTTGTTGCAAAATTAACATTTTCACACGTAAAATATATTGATAAAAGACAACATATAGATCCAATAGATTCAAACTAAATTCATCGGCATCTGCTTTTATGAAAAATGACAGATGAAATTGATTGCCTTATTTTATTTCATCTTTTACCTATTTGAGGGTTTCATAGTCTGGAAGTCTAGAACACTTGGAAGCCAGATTTTGCTGACAGCTTATGTAGTCGTGTTTGCATTCCAGGAATCTATGCGATATGATCAACTT</genome_strand>
        <mrna_strand>AATACGCCTATCTCCCTCTTTATCCTTTTTTCCATCTTCTTCTTCTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGTTGATAGTATGAAGGACCCCAGCA-TGCTGCATTTTGGTTGCTTACCTTGCCTCAGATTGTGGGTGGATTTGAATATGATGATGATGTCAAGAAGAAGATTTGGTGGCAATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTATGCGATATGATCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329865" ref_strand="+" ref_description="SGN-E329865 [cTOD-3-D14]">
      <seq>gcctatctttctctttatccttttttccatctgcttcttgttcttcaactagttgaatgtttgagcaatgtctcgaggcactgatcgcttactgaagaatttgaagcaattcactgaccttcaatacaagtacttcagtagccgctatggacagcaactcattgacattttcgaatttccaataaagcttgttctttcacctattacacttgcatatgacattgccggctctgctccgagaggtttcggtgtacctgaattcatctctaagctctcttattcgaccatctttgtggtagctactctgggtacttatgacattgcaatggagctcggaaagaaagtgatcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="107702" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108002" g_stop="108293" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109299" g_stop="109363" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="357" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="456" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110408" g_stop="110448" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="497" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E329865" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108002" e_stop="108293"/>
          <exon e_start="109299" e_stop="109363"/>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTCCCTCTTTATCCTTTTTTCCATCTTCTTCTTCTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTTGTAAGTTCACCGCACTTTCTTGTATGTAATTGGGGAAGTGTTACTTTCTGTTTTTTTTTTTTTTTACTTAATGGTCGTTAAGTGTTTGTTTATATGTCACTGAGAGGATGTGAATGGGATAGTATGTTTGATAGAATTTCTGAACTGGGTGTTTAAATTTATGTTTGTGTTTCACTGAAAAGGCCTTGAACGGGGAAGGTAGTTTTCAGTGTTTTATGAACTGGATTCGTTAAGTGTTTGTTTATATGTTACTGAGAGACCAGGAATGTGACAGTCTATTTGTTAGTATTTTTGAATTGGGTCTTCAAATGTATGTTCACGTGTCACTGAAAAGGCTTCGAATGGGGGATCGGTTTGCCGGTGTTTTATGAATATGAGTGTAAATGTCACTGTAAGCTCACCGGACTTTATTGTCCATTGCTGGAGAAGCATAATTGTCTGCATCTCTTCCTGGATTTGGTCTTTGTTCATATGTCACTAAGAGACCATGAATGGGACAGTCTAGTTGTTAAATTTCTGAATTGGGTCTTCCAATATATGTTCATGTTTCACTGAAAGGCCTTGAATGGGGGAACCAATGGTCAGTGTCTTATGAACTGGGCTTTAATTTAGTTGTTCATAAATCACTGGAAGCTCACCACACTTTCTCGTCCATAACTTGAGAAGCATTGTTGTCTGCATTTCTTCCTGATTTGGGTCTTTATATGTTTGTTCATAGGTCACTGAGAGACCATGAATGGAACAGTCTAGTTGTTAGAATTTCTGAACTGGGTATTCAATATATGTTCATGTTTCACTGGAATGCCTCGACTGTGTCTTTGAATGTTTGTTCATATATCACTAGGATCCCATGAATAGGAAGTTTTTTTCAGCATTCCCTGGATTGAGTCTTCAAGTAATATGTAAGAGAGGTGATGACCGGAGATTAATACAACGACTTTTAGGCTGAAAGTATTTGTTCAGTGAAGGTTTCTCCTAACAGAGATATTTGGTGTTTTACTGCAGGTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAGGTGCCCTTATAGTCTTAGCTCATGTTTACTTTTGTTAGAATTTATATTCCTGAAGTTGAAGTGTCTTATATTAGAAATAATGAAATTGATAAATGGTCCATGTCAAAAGTTTTGTTTTTTTGCTGATATGCACATCGTGTGTAAAAGGGCATCGAAGATTAAAGGTATCAGGCAACTCCATCCATTACCTTAAGGAATAGGTTTGAATGCTCACATTCTTTCATAGGTTTGGTTTTTCAATCCATATTTTACTTTAAATGGACTATGAGCTCGATAGATATCAGATATTTGTCTTATAGATATCAGATATTTGTCTTCTGTGCTCATTGGTGGTCTCGATGTCCTTATGCACAAGCTGATGTGGTAATCACAAATTGAAGTTAAAGTGAGAGAGCATCTTATTTGTGCTTACTGAAGGGAAGCTGAAATGCTTGTCAAATTTATAGTCAACTGGCATGTCTTGATATGTAAGGTGATGACATGTGTAATTGAAAGAAGATGCTTGGTTCATTGACTGCAGGGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAG</genome_strand>
        <mrna_strand>GCCTATCTTTCTCTTTATCCTTTTTTCCATCTGCTTCTTGTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAAGTGATCAGCCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707190" ref_strand="+" ref_description="SGN-E707190 [FA32BC03]">
      <seq>acgtttgagcaatgtctcgaggcactgatcgcttactgaagaatttgaagcaattcactgaccttcaatacaagtacttcagtagccgctatggacagcaactcattgacattttcgaatttccaataaagcttgttctttcacctattacacttgcatatgacattgccggctctgctccgagaggtttcggtgtacctgaattcatctctaagctctcttattcgaccatctttgtggtagctactctgggtacttatgacattgcaatggagctcggaaagaaggtgatcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatagctgataacagagctgagttggtgcatcttccttccacagtggaccttcacttgccactgccatctaaagaatgtcccagttgtgatggatcgggtgtgatgaaatgcccggaatgcaaagacaaactgcagataaagatatctgcagatgatattatggagcctccttggaaagcttataatatcatgaggaagatggattatccttacgagcatattgttgatagtatgaaggaccccagcattgctgcattttggttgcttaccttgcctcagattgtgggtggatttgaatatgatgatgatgtcaagaagaagatttggtggcaatataaggaatctatgcgatatgatcaacttcgagatgtggtggccaagagaaaacctggatgggagtatttgcaagaagccttggtctctattgatcctgcccgagcaagagaagatcctattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="107758" stop="116227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108058" g_stop="108293" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109299" g_stop="109363" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="301" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="400" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110408" g_stop="110540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="533" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111704" g_stop="111763" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="593" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112846" g_stop="112905" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="653" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112906" i_stop="113374" i_length="469">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113375" g_stop="113497" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="776" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113498" i_stop="115732" i_length="2235">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115733" g_stop="115804" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="848" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="115805" i_stop="115880" i_length="76">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="115881" g_stop="115927" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="895" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E707190" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108058" e_stop="108293"/>
          <exon e_start="109299" e_stop="109363"/>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110540"/>
          <exon e_start="111704" e_stop="111763"/>
          <exon e_start="112846" e_stop="112905"/>
          <exon e_start="113375" e_stop="113497"/>
          <exon e_start="115733" e_stop="115804"/>
          <exon e_start="115881" e_stop="115927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTTGTAAGTTCACCGCACTTTCTTGTATGTAATTGGGGAAGTGTTACTTTCTGTTTTTTTTTTTTTTTACTTAATGGTCGTTAAGTGTTTGTTTATATGTCACTGAGAGGATGTGAATGGGATAGTATGTTTGATAGAATTTCTGAACTGGGTGTTTAAATTTATGTTTGTGTTTCACTGAAAAGGCCTTGAACGGGGAAGGTAGTTTTCAGTGTTTTATGAACTGGATTCGTTAAGTGTTTGTTTATATGTTACTGAGAGACCAGGAATGTGACAGTCTATTTGTTAGTATTTTTGAATTGGGTCTTCAAATGTATGTTCACGTGTCACTGAAAAGGCTTCGAATGGGGGATCGGTTTGCCGGTGTTTTATGAATATGAGTGTAAATGTCACTGTAAGCTCACCGGACTTTATTGTCCATTGCTGGAGAAGCATAATTGTCTGCATCTCTTCCTGGATTTGGTCTTTGTTCATATGTCACTAAGAGACCATGAATGGGACAGTCTAGTTGTTAAATTTCTGAATTGGGTCTTCCAATATATGTTCATGTTTCACTGAAAGGCCTTGAATGGGGGAACCAATGGTCAGTGTCTTATGAACTGGGCTTTAATTTAGTTGTTCATAAATCACTGGAAGCTCACCACACTTTCTCGTCCATAACTTGAGAAGCATTGTTGTCTGCATTTCTTCCTGATTTGGGTCTTTATATGTTTGTTCATAGGTCACTGAGAGACCATGAATGGAACAGTCTAGTTGTTAGAATTTCTGAACTGGGTATTCAATATATGTTCATGTTTCACTGGAATGCCTCGACTGTGTCTTTGAATGTTTGTTCATATATCACTAGGATCCCATGAATAGGAAGTTTTTTTCAGCATTCCCTGGATTGAGTCTTCAAGTAATATGTAAGAGAGGTGATGACCGGAGATTAATACAACGACTTTTAGGCTGAAAGTATTTGTTCAGTGAAGGTTTCTCCTAACAGAGATATTTGGTGTTTTACTGCAGGTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAGGTGCCCTTATAGTCTTAGCTCATGTTTACTTTTGTTAGAATTTATATTCCTGAAGTTGAAGTGTCTTATATTAGAAATAATGAAATTGATAAATGGTCCATGTCAAAAGTTTTGTTTTTTTGCTGATATGCACATCGTGTGTAAAAGGGCATCGAAGATTAAAGGTATCAGGCAACTCCATCCATTACCTTAAGGAATAGGTTTGAATGCTCACATTCTTTCATAGGTTTGGTTTTTCAATCCATATTTTACTTTAAATGGACTATGAGCTCGATAGATATCAGATATTTGTCTTATAGATATCAGATATTTGTCTTCTGTGCTCATTGGTGGTCTCGATGTCCTTATGCACAAGCTGATGTGGTAATCACAAATTGAAGTTAAAGTGAGAGAGCATCTTATTTGTGCTTACTGAAGGGAAGCTGAAATGCTTGTCAAATTTATAGTCAACTGGCATGTCTTGATATGTAAGGTGATGACATGTGTAATTGAAAGAAGATGCTTGGTTCATTGACTGCAGGGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCGGTGAGAACTGTTTTGGCAATTTTTTCAAATTTCATAATATAGCTTCTTAAGGGCTGAAAATAAACTGAGTGAGTCATGCCAGTAGTTCTTTTGGCTTGAGAAACCATCCAAAATGCCAAGGTAAAGATATAGAGTTTCATTTGTTATGGAAAGCCAAGTTGAGAATAGGGCTTATTGAATAAGTAAAGCCAAGCCTAACCAGAAATCAACTTGGCTCATGTTATTTATGTGGCATGTATCTGTAGTTTCATTCAGTGTTGTCAAAGGCTCGCCTGAAGCATGTTAAGACCTGAAGCGACGCACAAAACATGCTGAGCACTTTGCCTCGCTTAGTGGGCGCTTCAGTGTAGTGATTGAGGCTTCAAGGCATACTTGATACTTCTCCCTATCAATGAGTGTTATCCTGAAGAGGCAACATTACACAATTATTATTTACTTTATCTTAATTTCTTTTTCCATTGATTTGTTATTCATGCTTTAGAATTATTAGTCTTTGACTGCACATATATTATTGTATTTTTTTTCTTTATTCTTAAATGTCTGACTGACCTTAAAGCTTTTTGTGCTTTTCGCCTTTGACAACACTGCCTTCATTTGATTTTAACTGTATCTTCCCATGCTTCTACTAGTTAATAGGTAATATTTGTTAGTTGATATGACTTTGAAGACGACTTAGAAGCACGTAAGTTCAATCACTTAGGTAATTAGGTTGAATCCTGCACAAGAACCCATAGCCCTAGCTCATGAAGATAGTTTTCCGATAATCTAGAACCAGACCTTTATGTGTAACCTGATTTGAGCTTTGATATCACCTCGATATGCATGATGGAACCTGAGTGGTTTTGGAGCTCATCCTATTATTCAGTAATCTTGTTAAATAGAGGCTGTTTTGATACTATATCAATGAATTTGGATTATGCATGATGCTTCCTTTTAGTCTAGTATGTTATGAGTTAAGAACTGTATTATTTTCTTGCACACACAAGCTTCATTATTTCCTTTAGTTGGATTTGTGTCAATTGTGTTAAATCTGGATGCAGTCATTATGCTTCACATGATCTTTGATATCCACCTATGCCTAGTCTTAACTCTTAAGTAAGAACTGTTCAAACTTTTTGGAACTTAAGCAATGGCTGTTGCTAATGATACCACTTATTCTGCAGGGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGATGTGAGTTCTATCCAGTCTTTCCTGTTCTTTGTTCCATTTTCTTTTTCTACTTTTTAAAAACCATTGAGATTTTCTTTTACATTATGCTAATATATTTACCATCGAGAGTTATTTCTAACATCATGCAATATATTGGGTACTATATTAGAATCATAACGGCACTGACTTAGTGGTCAATGAAGTGAGTGCAAACTGCAAACCTTAGAGACCATAGTTCAAAGCCCCGTAGAGGCAGAAAACACTACATGCTCTTTTCCCTCTTCCCAAGCCTTGACAGGCAGAGTTACCTAATACATGTTCTTGTGAGAAAAATCCATCGGAATAGTTGAGGTGCACAAGCTGGCCCGGACGCCACCATTATAAACAAAAACAAAAAAGGAAGAAGAATTCTAGTGGCAGTGGATTTTGCTTCTCAATTTTTTTTAAATGCACCTTCCTGATCTTTCATTTTCTAGTCATTTCATAGAAACAGTGTGTGATATTTTGATTATATTTTTGACACACTTAGAATTCTAGTCATAACCCTTTCCTACTCATGCTAAAACTTAGAGACTGTGAAAACCTGCAGCCTGTCACGAGGTCTGCTTCCATTAGTGAAGAGTTTTATCTTGGGAAACTATTTCATTTGTTTCGCTCATCCATTTCATATGCCTCTAGATAAAGTAAAAGTGTATGAACAAGAATTGGTATCTATGCTAAATTTCGTCACAGTTGATAGATGTTCATGTAAAAGGTTTCTATGTGCATAAATCTGTTCCACTATATTGATTAATGCCGTTAAAATGGAGTATGGAAAAATATTGGTATCTGCAAACAAGAGGAGGTAATCAGAAATGAGTCATAAAAACACATCCATGGGGAAAACCTAGAAATCTAGTGAACCAGGAATAGTTTTCTACACTCTTGAGTATGGTAAAGAGGAATGGCAAATAAAATGAACACTAAATAATGTCCTTTTTTCCCATTTGTATTCTTGATGTCGTGAATTTTCATTCTAGGAAGAATTTTTTTTCCTCCTTTTCTTTCGGTTTTGATTTACCTTTTAGTCATTCTCATGTCTGTGTAATCTTTCAATGCTACAGATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTCTATTCATTGCCTACTCCCCAGTAGATATTTGTGATCATCCTATTCACCAGATTGTCTTGCTTATAAGTGTGTGAGTTCTCAAATATTTTCTATAGAAAAGTCAAGTATAAGAAGCCCCTTACAACTTTGCACTTTATCATTTTCCTCTTCTTTACTGTTACAGCATATTGTTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGGTTGCTTACCTTGCCTCAGATTGTGGGTGGATTTGAATATGATGATGATGTCAAGAAGAAGATTTGGTGGCAATATAAGGTTTACTTTTATCTTATGGTTGTCAAAGACTGCTTTTTTCCCCTTGCTATTCATAATTGCTCAGTTATTTTGTGAATGTTGAGCATTTTACAGAGCCCATAACACATGCTTTAGTATCTGTAAATTTTGAACTCTATTATTGCACACATTGAAACAGGAAATAAAAAGAAGAGGCGAACTCTATATTAATCAGATAAATATGCTCACCCTATTTCAAGTGCACCAGAAACAAACTTGAACTGATTAGCAACCTATTTAACTTTGATTAATATGGAAGTTACTCACATCAGCAAAGGATGAGATGCTAAAAAAAAAGGAAGAAACTTACAATCGAATTCAACTTCCTAATGCCGCTCCTCCAGGTAGTGCATTAGAGAACTTCTAAGTAACCAATGCTATCCTGTCAAAATCCAAAGTATACCTTTTTTATTTTTGTCTTCTGGCTTCTTTTATCCCTAAAGCTGAAAAAGAGTTTGCAAGATTGAAGGGGATGACACCGAACTCATGTAACTCAATTTATACCAATTACTAATGAAAATTTTCAACACGCTTTATTGGTAGAATGAGGTTTTTGCACAAGTATACACAGGAAATTTCTGAACTTGCAATAAGATTGAAAGCTAAGTTGCGCGGACTCTTCACTTTCGATGTCGCACCCGTGTCAGATTCTCCAAAAATATGCTACTTTTGGAGAATCTCATACACACCCGTTGACATTTTTGAAGGGTTCGAGCAAACATAGATTGAAAGTAATCTATGGAATCTTCTCAAAATATCCAAGTTCAAGTCACATGATTTGTTAAGGTTTCCTTTTTTAATGCTCAAAAGAAAATTTTGGAATCAGCTTAACATCAAGAGAGTTCATCATCTAGTTGATTGTGAATCTAGGACTTGTACATAGAGCTACATACCAATGCCCTGTGGTCAATGTATTCACTTCCTTGTAGTTTCTTTGGCAACCTTTCCCTTTTAGTTTGTTCCTTTAAGAATGACAACTTTCTAAATTAGGAAATGATTGAAGAAGTACTTCCAATGTACCTTTAATGAGAAGATTTTATAGCCACACATGTTATGGAATTTTTAAAACCACAGGCTTCTAAAGCCTTAAAGCCACACAAATCTTAAATTTTGAGACATGGTTATGATCATCAGTCTCAAAAATCTTCCTTTCTTAAAGTCCATTCCTATTCAAATTGCCACAAAAATTGGAATGGCGGGAGTTCAATTTTGTGCTGTTTGATTTCAAAATGCTTCATATTCTTTTTCTTTCTGTGTAAACATGCTTCATCTAAGTTCACTCTGGTAAAAATTGAACAATGATATATTGGCAAGGAACAGCGGCTGAGCCACGTGTAAAGAAGGGAATTCAATTGAATCCCCTTCATCCAAAAATTAATCTTTGCAATAGGATAAAAGCAATTTTCTGTATGCATATAACTTTTTGAATCCCTGTGAAAGAAAAAGAGCTTCCAGTGTAATGGAAAATGTAGATAAAAAATTATTTTTACATTTTTGACTCTTTGTTATAGTTCATGGCCCTGTCAATGGTAAAAGAAGTTCATGCTTCATAATCATATATGTTCTATTCAGATGATTATTTTATCTCGAAATTCTTATGCAAAGATTAACTGTGGTAGAGTTTCAACCTAAGTCCCAGTAAGCCTTATCCTATTGCTGGGTTCGGATACAGGAAGTCAGGAACCCATTTGCTTTATTCAGCTTTATCTACAAACATCCGCCACTCGATGTCAAGTAACAGGTCTTTTATTGATGTCTCTGTTGTTTTTCTCATCCTCTTCCCTCCTTTTAAGGATTTATGTACCACAATTCCCTTCAATCTGCATAATCAAAGTTCTTTTAGCTATTGCGGAATCTCACAATACAAGCCTTGTACAATTGGCTGTGACGTTCAGAGAAAAGCCATTTCGACTGTTAAACTCATTGAAGAGATGACTTTTGAGTTTTCATCTATGATTATAATGAAGTTCTGAAGTTGTCTTCTTGTTGCAAAATTAACATTTTCACACGTAAAATATATTGATAAAAGACAACATATAGATCCAATAGATTCAAACTAAATTCATCGGCATCTGCTTTTATGAAAAATGACAGATGAAATTGATTGCCTTATTTTATTTCATCTTTTACCTATTTGAGGGTTTCATAGTCTGGAAGTCTAGAACACTTGGAAGCCAGATTTTGCTGACAGCTTATGTAGTCGTGTTTGCATTCCAGGAATCTATGCGATATGATCAACTTCGAGATGTGGTGGCCAAGAGAAAACCTGGATGGGAGTATTTGCAAGAAGTATGACATTTTTTTTTTGTGGTAAATATGTCTGAGTAATATCCCGATCAACTTTCTTGACTAAATTATCTTACAGGCCTTGGTCTCTATTGATCCTGCCCGAGCAAGAGAAGATCCTATTAT</genome_strand>
        <mrna_strand>ACGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGTTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGGTTGCTTACCTTGCCTCAGATTGTGGGTGGATTTGAATATGATGATGATGTCAAGAAGAAGATTTGGTGGCAATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTATGCGATATGATCAACTTCGAGATGTGGTGGCCAAGAGAAAACCTGGATGGGAGTATTTGCAAGAA............................................................................GCCTTGGTCTCTATTGATCCTGCCCGAGCAAGAGAAGATCCTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320315" ref_strand="+" ref_description="SGN-E320315 [cTOB-21-L14]">
      <seq>ttgagcaatgtctcgaggcactgatcgcttactgaagaatttgaagcaattcactgaccttcaatacaagtacttcagtagccgctatggacagcaactcattgacattttcgaatttccaataaagcttgttctttcacctattacacttgcatatgacattgccggctctgctccgagaggtttcggtgtacctgaattcatctctaagctctcttattcgaccatctttgtggtagctactctgggtacttatgacattgcaatggagctcggaaagaaggtgatcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatagctgataacagagctgagttggtgcatcttccttccacagtggaccttcacttgccactgccatctaaagaatgtcccagttgtgatggatcgggtgtgatgaaatgcccggaatgcaaagacaaactgcagataaagatatctgcagatgatattatggagcctccttggaaagcttataatatcatgaggaagatggattatcttacgagcatattggtgatagtatgaaggaccccagcattgctgcattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="107762" stop="113719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108062" g_stop="108293" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109299" g_stop="109363" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="297" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="396" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110408" g_stop="110540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="529" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111704" g_stop="111763" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="589" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112846" g_stop="112905" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="648" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112906" i_stop="113374" i_length="469">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113375" g_stop="113419" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="693" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E320315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108062" e_stop="108293"/>
          <exon e_start="109299" e_stop="109363"/>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110540"/>
          <exon e_start="111704" e_stop="111763"/>
          <exon e_start="112846" e_stop="112905"/>
          <exon e_start="113375" e_stop="113419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTTGTAAGTTCACCGCACTTTCTTGTATGTAATTGGGGAAGTGTTACTTTCTGTTTTTTTTTTTTTTTACTTAATGGTCGTTAAGTGTTTGTTTATATGTCACTGAGAGGATGTGAATGGGATAGTATGTTTGATAGAATTTCTGAACTGGGTGTTTAAATTTATGTTTGTGTTTCACTGAAAAGGCCTTGAACGGGGAAGGTAGTTTTCAGTGTTTTATGAACTGGATTCGTTAAGTGTTTGTTTATATGTTACTGAGAGACCAGGAATGTGACAGTCTATTTGTTAGTATTTTTGAATTGGGTCTTCAAATGTATGTTCACGTGTCACTGAAAAGGCTTCGAATGGGGGATCGGTTTGCCGGTGTTTTATGAATATGAGTGTAAATGTCACTGTAAGCTCACCGGACTTTATTGTCCATTGCTGGAGAAGCATAATTGTCTGCATCTCTTCCTGGATTTGGTCTTTGTTCATATGTCACTAAGAGACCATGAATGGGACAGTCTAGTTGTTAAATTTCTGAATTGGGTCTTCCAATATATGTTCATGTTTCACTGAAAGGCCTTGAATGGGGGAACCAATGGTCAGTGTCTTATGAACTGGGCTTTAATTTAGTTGTTCATAAATCACTGGAAGCTCACCACACTTTCTCGTCCATAACTTGAGAAGCATTGTTGTCTGCATTTCTTCCTGATTTGGGTCTTTATATGTTTGTTCATAGGTCACTGAGAGACCATGAATGGAACAGTCTAGTTGTTAGAATTTCTGAACTGGGTATTCAATATATGTTCATGTTTCACTGGAATGCCTCGACTGTGTCTTTGAATGTTTGTTCATATATCACTAGGATCCCATGAATAGGAAGTTTTTTTCAGCATTCCCTGGATTGAGTCTTCAAGTAATATGTAAGAGAGGTGATGACCGGAGATTAATACAACGACTTTTAGGCTGAAAGTATTTGTTCAGTGAAGGTTTCTCCTAACAGAGATATTTGGTGTTTTACTGCAGGTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAGGTGCCCTTATAGTCTTAGCTCATGTTTACTTTTGTTAGAATTTATATTCCTGAAGTTGAAGTGTCTTATATTAGAAATAATGAAATTGATAAATGGTCCATGTCAAAAGTTTTGTTTTTTTGCTGATATGCACATCGTGTGTAAAAGGGCATCGAAGATTAAAGGTATCAGGCAACTCCATCCATTACCTTAAGGAATAGGTTTGAATGCTCACATTCTTTCATAGGTTTGGTTTTTCAATCCATATTTTACTTTAAATGGACTATGAGCTCGATAGATATCAGATATTTGTCTTATAGATATCAGATATTTGTCTTCTGTGCTCATTGGTGGTCTCGATGTCCTTATGCACAAGCTGATGTGGTAATCACAAATTGAAGTTAAAGTGAGAGAGCATCTTATTTGTGCTTACTGAAGGGAAGCTGAAATGCTTGTCAAATTTATAGTCAACTGGCATGTCTTGATATGTAAGGTGATGACATGTGTAATTGAAAGAAGATGCTTGGTTCATTGACTGCAGGGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCGGTGAGAACTGTTTTGGCAATTTTTTCAAATTTCATAATATAGCTTCTTAAGGGCTGAAAATAAACTGAGTGAGTCATGCCAGTAGTTCTTTTGGCTTGAGAAACCATCCAAAATGCCAAGGTAAAGATATAGAGTTTCATTTGTTATGGAAAGCCAAGTTGAGAATAGGGCTTATTGAATAAGTAAAGCCAAGCCTAACCAGAAATCAACTTGGCTCATGTTATTTATGTGGCATGTATCTGTAGTTTCATTCAGTGTTGTCAAAGGCTCGCCTGAAGCATGTTAAGACCTGAAGCGACGCACAAAACATGCTGAGCACTTTGCCTCGCTTAGTGGGCGCTTCAGTGTAGTGATTGAGGCTTCAAGGCATACTTGATACTTCTCCCTATCAATGAGTGTTATCCTGAAGAGGCAACATTACACAATTATTATTTACTTTATCTTAATTTCTTTTTCCATTGATTTGTTATTCATGCTTTAGAATTATTAGTCTTTGACTGCACATATATTATTGTATTTTTTTTCTTTATTCTTAAATGTCTGACTGACCTTAAAGCTTTTTGTGCTTTTCGCCTTTGACAACACTGCCTTCATTTGATTTTAACTGTATCTTCCCATGCTTCTACTAGTTAATAGGTAATATTTGTTAGTTGATATGACTTTGAAGACGACTTAGAAGCACGTAAGTTCAATCACTTAGGTAATTAGGTTGAATCCTGCACAAGAACCCATAGCCCTAGCTCATGAAGATAGTTTTCCGATAATCTAGAACCAGACCTTTATGTGTAACCTGATTTGAGCTTTGATATCACCTCGATATGCATGATGGAACCTGAGTGGTTTTGGAGCTCATCCTATTATTCAGTAATCTTGTTAAATAGAGGCTGTTTTGATACTATATCAATGAATTTGGATTATGCATGATGCTTCCTTTTAGTCTAGTATGTTATGAGTTAAGAACTGTATTATTTTCTTGCACACACAAGCTTCATTATTTCCTTTAGTTGGATTTGTGTCAATTGTGTTAAATCTGGATGCAGTCATTATGCTTCACATGATCTTTGATATCCACCTATGCCTAGTCTTAACTCTTAAGTAAGAACTGTTCAAACTTTTTGGAACTTAAGCAATGGCTGTTGCTAATGATACCACTTATTCTGCAGGGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGATGTGAGTTCTATCCAGTCTTTCCTGTTCTTTGTTCCATTTTCTTTTTCTACTTTTTAAAAACCATTGAGATTTTCTTTTACATTATGCTAATATATTTACCATCGAGAGTTATTTCTAACATCATGCAATATATTGGGTACTATATTAGAATCATAACGGCACTGACTTAGTGGTCAATGAAGTGAGTGCAAACTGCAAACCTTAGAGACCATAGTTCAAAGCCCCGTAGAGGCAGAAAACACTACATGCTCTTTTCCCTCTTCCCAAGCCTTGACAGGCAGAGTTACCTAATACATGTTCTTGTGAGAAAAATCCATCGGAATAGTTGAGGTGCACAAGCTGGCCCGGACGCCACCATTATAAACAAAAACAAAAAAGGAAGAAGAATTCTAGTGGCAGTGGATTTTGCTTCTCAATTTTTTTTAAATGCACCTTCCTGATCTTTCATTTTCTAGTCATTTCATAGAAACAGTGTGTGATATTTTGATTATATTTTTGACACACTTAGAATTCTAGTCATAACCCTTTCCTACTCATGCTAAAACTTAGAGACTGTGAAAACCTGCAGCCTGTCACGAGGTCTGCTTCCATTAGTGAAGAGTTTTATCTTGGGAAACTATTTCATTTGTTTCGCTCATCCATTTCATATGCCTCTAGATAAAGTAAAAGTGTATGAACAAGAATTGGTATCTATGCTAAATTTCGTCACAGTTGATAGATGTTCATGTAAAAGGTTTCTATGTGCATAAATCTGTTCCACTATATTGATTAATGCCGTTAAAATGGAGTATGGAAAAATATTGGTATCTGCAAACAAGAGGAGGTAATCAGAAATGAGTCATAAAAACACATCCATGGGGAAAACCTAGAAATCTAGTGAACCAGGAATAGTTTTCTACACTCTTGAGTATGGTAAAGAGGAATGGCAAATAAAATGAACACTAAATAATGTCCTTTTTTCCCATTTGTATTCTTGATGTCGTGAATTTTCATTCTAGGAAGAATTTTTTTTCCTCCTTTTCTTTCGGTTTTGATTTACCTTTTAGTCATTCTCATGTCTGTGTAATCTTTCAATGCTACAGATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTCTATTCATTGCCTACTCCCCAGTAGATATTTGTGATCATCCTATTCACCAGATTGTCTTGCTTATAAGTGTGTGAGTTCTCAAATATTTTCTATAGAAAAGTCAAGTATAAGAAGCCCCTTACAACTTTGCACTTTATCATTTTCCTCTTCTTTACTGTTACAGCATATTGTTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGG</genome_strand>
        <mrna_strand>TTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTAT-CTTACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278137" ref_strand="+" ref_description="SGN-E278137 [cLER-4-P11]">
      <seq>cgaggcactgatcgcttactgaagaatttgaagcaattcactgaccttcaatacaagtacttcagtagccgctatggacagcaactcattgacattttcgaatttccaataaagcttgttctttcacctattacacttgcatatgacattgccggctctgctccgagaggtttcggtgtacctgaattcatctctaagctctcttattcgaccatctttgtggtagctactctgggtacttatgacattgcaatggagctcggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="107775" stop="109647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108075" g_stop="108293" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109299" g_stop="109347" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="268" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E278137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108075" e_stop="108293"/>
          <exon e_start="109299" e_stop="109347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTTGTAAGTTCACCGCACTTTCTTGTATGTAATTGGGGAAGTGTTACTTTCTGTTTTTTTTTTTTTTTACTTAATGGTCGTTAAGTGTTTGTTTATATGTCACTGAGAGGATGTGAATGGGATAGTATGTTTGATAGAATTTCTGAACTGGGTGTTTAAATTTATGTTTGTGTTTCACTGAAAAGGCCTTGAACGGGGAAGGTAGTTTTCAGTGTTTTATGAACTGGATTCGTTAAGTGTTTGTTTATATGTTACTGAGAGACCAGGAATGTGACAGTCTATTTGTTAGTATTTTTGAATTGGGTCTTCAAATGTATGTTCACGTGTCACTGAAAAGGCTTCGAATGGGGGATCGGTTTGCCGGTGTTTTATGAATATGAGTGTAAATGTCACTGTAAGCTCACCGGACTTTATTGTCCATTGCTGGAGAAGCATAATTGTCTGCATCTCTTCCTGGATTTGGTCTTTGTTCATATGTCACTAAGAGACCATGAATGGGACAGTCTAGTTGTTAAATTTCTGAATTGGGTCTTCCAATATATGTTCATGTTTCACTGAAAGGCCTTGAATGGGGGAACCAATGGTCAGTGTCTTATGAACTGGGCTTTAATTTAGTTGTTCATAAATCACTGGAAGCTCACCACACTTTCTCGTCCATAACTTGAGAAGCATTGTTGTCTGCATTTCTTCCTGATTTGGGTCTTTATATGTTTGTTCATAGGTCACTGAGAGACCATGAATGGAACAGTCTAGTTGTTAGAATTTCTGAACTGGGTATTCAATATATGTTCATGTTTCACTGGAATGCCTCGACTGTGTCTTTGAATGTTTGTTCATATATCACTAGGATCCCATGAATAGGAAGTTTTTTTCAGCATTCCCTGGATTGAGTCTTCAAGTAATATGTAAGAGAGGTGATGACCGGAGATTAATACAACGACTTTTAGGCTGAAAGTATTTGTTCAGTGAAGGTTTCTCCTAACAGAGATATTTGGTGTTTTACTGCAGGTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGA</genome_strand>
        <mrna_strand>CGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371369" ref_strand="+" ref_description="SGN-E371369 [TUS-27-I21]">
      <seq>atcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatagctgataacagagctgagttggtgcatcttccttccacagtggaccttcacttgccactgccatctaaagaatgtcccagttgtgatggatcgggtgtgatgaaatgcccggaatgcaaagacaaactgcagataaagatatctgcagatgatattatggagcctccttggaaagcttataatatcatgaggaagatggattatccttacgaggctagtgctttgtcatccctgtttctgttttgtaacaattaatactgcttactgtaaatgttctttttttcgctgcatctcatccatcattgcttgatttacattttttttgttcaatatctcaaaggatgagaagaaagattctcatgctgttgggaagtgggaaaggattttcaaatgaagaagaattgatttccttcctattttttatggagaaaaagggttcaaaggaaatatgtttcttctttctggttacttttccttttatatgacaagctaaagttgggagagaaaattctcatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="109576" stop="113511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110408" g_stop="110540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="243" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111704" g_stop="111763" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="303" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112846" g_stop="113211" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="669" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E371369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110540"/>
          <exon e_start="111704" e_stop="111763"/>
          <exon e_start="112846" e_stop="113211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCGGTGAGAACTGTTTTGGCAATTTTTTCAAATTTCATAATATAGCTTCTTAAGGGCTGAAAATAAACTGAGTGAGTCATGCCAGTAGTTCTTTTGGCTTGAGAAACCATCCAAAATGCCAAGGTAAAGATATAGAGTTTCATTTGTTATGGAAAGCCAAGTTGAGAATAGGGCTTATTGAATAAGTAAAGCCAAGCCTAACCAGAAATCAACTTGGCTCATGTTATTTATGTGGCATGTATCTGTAGTTTCATTCAGTGTTGTCAAAGGCTCGCCTGAAGCATGTTAAGACCTGAAGCGACGCACAAAACATGCTGAGCACTTTGCCTCGCTTAGTGGGCGCTTCAGTGTAGTGATTGAGGCTTCAAGGCATACTTGATACTTCTCCCTATCAATGAGTGTTATCCTGAAGAGGCAACATTACACAATTATTATTTACTTTATCTTAATTTCTTTTTCCATTGATTTGTTATTCATGCTTTAGAATTATTAGTCTTTGACTGCACATATATTATTGTATTTTTTTTCTTTATTCTTAAATGTCTGACTGACCTTAAAGCTTTTTGTGCTTTTCGCCTTTGACAACACTGCCTTCATTTGATTTTAACTGTATCTTCCCATGCTTCTACTAGTTAATAGGTAATATTTGTTAGTTGATATGACTTTGAAGACGACTTAGAAGCACGTAAGTTCAATCACTTAGGTAATTAGGTTGAATCCTGCACAAGAACCCATAGCCCTAGCTCATGAAGATAGTTTTCCGATAATCTAGAACCAGACCTTTATGTGTAACCTGATTTGAGCTTTGATATCACCTCGATATGCATGATGGAACCTGAGTGGTTTTGGAGCTCATCCTATTATTCAGTAATCTTGTTAAATAGAGGCTGTTTTGATACTATATCAATGAATTTGGATTATGCATGATGCTTCCTTTTAGTCTAGTATGTTATGAGTTAAGAACTGTATTATTTTCTTGCACACACAAGCTTCATTATTTCCTTTAGTTGGATTTGTGTCAATTGTGTTAAATCTGGATGCAGTCATTATGCTTCACATGATCTTTGATATCCACCTATGCCTAGTCTTAACTCTTAAGTAAGAACTGTTCAAACTTTTTGGAACTTAAGCAATGGCTGTTGCTAATGATACCACTTATTCTGCAGGGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGATGTGAGTTCTATCCAGTCTTTCCTGTTCTTTGTTCCATTTTCTTTTTCTACTTTTTAAAAACCATTGAGATTTTCTTTTACATTATGCTAATATATTTACCATCGAGAGTTATTTCTAACATCATGCAATATATTGGGTACTATATTAGAATCATAACGGCACTGACTTAGTGGTCAATGAAGTGAGTGCAAACTGCAAACCTTAGAGACCATAGTTCAAAGCCCCGTAGAGGCAGAAAACACTACATGCTCTTTTCCCTCTTCCCAAGCCTTGACAGGCAGAGTTACCTAATACATGTTCTTGTGAGAAAAATCCATCGGAATAGTTGAGGTGCACAAGCTGGCCCGGACGCCACCATTATAAACAAAAACAAAAAAGGAAGAAGAATTCTAGTGGCAGTGGATTTTGCTTCTCAATTTTTTTTAAATGCACCTTCCTGATCTTTCATTTTCTAGTCATTTCATAGAAACAGTGTGTGATATTTTGATTATATTTTTGACACACTTAGAATTCTAGTCATAACCCTTTCCTACTCATGCTAAAACTTAGAGACTGTGAAAACCTGCAGCCTGTCACGAGGTCTGCTTCCATTAGTGAAGAGTTTTATCTTGGGAAACTATTTCATTTGTTTCGCTCATCCATTTCATATGCCTCTAGATAAAGTAAAAGTGTATGAACAAGAATTGGTATCTATGCTAAATTTCGTCACAGTTGATAGATGTTCATGTAAAAGGTTTCTATGTGCATAAATCTGTTCCACTATATTGATTAATGCCGTTAAAATGGAGTATGGAAAAATATTGGTATCTGCAAACAAGAGGAGGTAATCAGAAATGAGTCATAAAAACACATCCATGGGGAAAACCTAGAAATCTAGTGAACCAGGAATAGTTTTCTACACTCTTGAGTATGGTAAAGAGGAATGGCAAATAAAATGAACACTAAATAATGTCCTTTTTTCCCATTTGTATTCTTGATGTCGTGAATTTTCATTCTAGGAAGAATTTTTTTTCCTCCTTTTCTTTCGGTTTTGATTTACCTTTTAGTCATTCTCATGTCTGTGTAATCTTTCAATGCTACAGATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTC</genome_strand>
        <mrna_strand>GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271209" ref_strand="+" ref_description="SGN-E271209 [cLEM-5-A24]">
      <seq>atcagccagagggactgccggacatgctgtgggtggcaggcgttgcagtgcacaatgtgcaaaggatcaggcaaagtgcattaccaagtgaagaactacacattgaaaaggggagaaaaagccacagctgaatccattgctgatgcgatagctgataacagagctgagttggtgcatcttccttccacagtggaccttcacttgccactgccatctaaagaatgtcccacttgtgatggatcgggtgtgatgaaatgcccggaatgcaaagacaaactgcagataaagatatctgcagatgatattatggagcctccttggaaagcttataatatcatgaggaagatggattatccttacgaggctagtgctttgtcatccctgtttctgttttgtaacaattaatactgcttactgtaaatgttctttttttcgctgcatctcatccatcattgcttgatgtacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="109576" stop="113312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109982" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110408" g_stop="110540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="243" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111704" g_stop="111763" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="303" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112846" g_stop="113012" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="470" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E271209" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109982"/>
          <exon e_start="110408" e_stop="110540"/>
          <exon e_start="111704" e_stop="111763"/>
          <exon e_start="112846" e_stop="113012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAGGTAGGTAATCATTGATAAACTTGTACTCTTGCTGTTAAAATGAACATCCTGTTCACATTTTATGTATTAATCCAATTTCTAGAACAACATTATGGTTTTTGTCATATTCTGAACTGCATACTCTTAAAAGATATACTGAAGTGCTTTCACCTTCTTCTTCTCCCACGTCCCATGTGACTGTTAAAACACATTCTAGTCTTCAGGTTTCTTAATTCAGATTCGGCAATCAAAGTGGCTCGTGTAATTGCTGTTGGTAGCTCAAAACATCACCATCATCATGTTGGTGTACTGAGCCACCTTCTTCTTGTTTTATGTTATTAATCATCATAGTTCTGAAAAATCATAAATTATTCTAGGGACATGAAGATAATGTCAAACACACTGAATATTTATGTCTATTTAAAGCTTCCAAATTACTGATACAGGGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCGGTGAGAACTGTTTTGGCAATTTTTTCAAATTTCATAATATAGCTTCTTAAGGGCTGAAAATAAACTGAGTGAGTCATGCCAGTAGTTCTTTTGGCTTGAGAAACCATCCAAAATGCCAAGGTAAAGATATAGAGTTTCATTTGTTATGGAAAGCCAAGTTGAGAATAGGGCTTATTGAATAAGTAAAGCCAAGCCTAACCAGAAATCAACTTGGCTCATGTTATTTATGTGGCATGTATCTGTAGTTTCATTCAGTGTTGTCAAAGGCTCGCCTGAAGCATGTTAAGACCTGAAGCGACGCACAAAACATGCTGAGCACTTTGCCTCGCTTAGTGGGCGCTTCAGTGTAGTGATTGAGGCTTCAAGGCATACTTGATACTTCTCCCTATCAATGAGTGTTATCCTGAAGAGGCAACATTACACAATTATTATTTACTTTATCTTAATTTCTTTTTCCATTGATTTGTTATTCATGCTTTAGAATTATTAGTCTTTGACTGCACATATATTATTGTATTTTTTTTCTTTATTCTTAAATGTCTGACTGACCTTAAAGCTTTTTGTGCTTTTCGCCTTTGACAACACTGCCTTCATTTGATTTTAACTGTATCTTCCCATGCTTCTACTAGTTAATAGGTAATATTTGTTAGTTGATATGACTTTGAAGACGACTTAGAAGCACGTAAGTTCAATCACTTAGGTAATTAGGTTGAATCCTGCACAAGAACCCATAGCCCTAGCTCATGAAGATAGTTTTCCGATAATCTAGAACCAGACCTTTATGTGTAACCTGATTTGAGCTTTGATATCACCTCGATATGCATGATGGAACCTGAGTGGTTTTGGAGCTCATCCTATTATTCAGTAATCTTGTTAAATAGAGGCTGTTTTGATACTATATCAATGAATTTGGATTATGCATGATGCTTCCTTTTAGTCTAGTATGTTATGAGTTAAGAACTGTATTATTTTCTTGCACACACAAGCTTCATTATTTCCTTTAGTTGGATTTGTGTCAATTGTGTTAAATCTGGATGCAGTCATTATGCTTCACATGATCTTTGATATCCACCTATGCCTAGTCTTAACTCTTAAGTAAGAACTGTTCAAACTTTTTGGAACTTAAGCAATGGCTGTTGCTAATGATACCACTTATTCTGCAGGGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGATGTGAGTTCTATCCAGTCTTTCCTGTTCTTTGTTCCATTTTCTTTTTCTACTTTTTAAAAACCATTGAGATTTTCTTTTACATTATGCTAATATATTTACCATCGAGAGTTATTTCTAACATCATGCAATATATTGGGTACTATATTAGAATCATAACGGCACTGACTTAGTGGTCAATGAAGTGAGTGCAAACTGCAAACCTTAGAGACCATAGTTCAAAGCCCCGTAGAGGCAGAAAACACTACATGCTCTTTTCCCTCTTCCCAAGCCTTGACAGGCAGAGTTACCTAATACATGTTCTTGTGAGAAAAATCCATCGGAATAGTTGAGGTGCACAAGCTGGCCCGGACGCCACCATTATAAACAAAAACAAAAAAGGAAGAAGAATTCTAGTGGCAGTGGATTTTGCTTCTCAATTTTTTTTAAATGCACCTTCCTGATCTTTCATTTTCTAGTCATTTCATAGAAACAGTGTGTGATATTTTGATTATATTTTTGACACACTTAGAATTCTAGTCATAACCCTTTCCTACTCATGCTAAAACTTAGAGACTGTGAAAACCTGCAGCCTGTCACGAGGTCTGCTTCCATTAGTGAAGAGTTTTATCTTGGGAAACTATTTCATTTGTTTCGCTCATCCATTTCATATGCCTCTAGATAAAGTAAAAGTGTATGAACAAGAATTGGTATCTATGCTAAATTTCGTCACAGTTGATAGATGTTCATGTAAAAGGTTTCTATGTGCATAAATCTGTTCCACTATATTGATTAATGCCGTTAAAATGGAGTATGGAAAAATATTGGTATCTGCAAACAAGAGGAGGTAATCAGAAATGAGTCATAAAAACACATCCATGGGGAAAACCTAGAAATCTAGTGAACCAGGAATAGTTTTCTACACTCTTGAGTATGGTAAAGAGGAATGGCAAATAAAATGAACACTAAATAATGTCCTTTTTTCCCATTTGTATTCTTGATGTCGTGAATTTTCATTCTAGGAAGAATTTTTTTTCCTCCTTTTCTTTCGGTTTTGATTTACCTTTTAGTCATTCTCATGTCTGTGTAATCTTTCAATGCTACAGATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTT</genome_strand>
        <mrna_strand>GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCACTTGTGATGGATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATGTACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250737" ref_strand="+" ref_description="SGN-E250737 [cLEG-7-D19]">
      <seq>aaacgttctttacttcaaggccaagaaaactctggaggcagaagtcatgaggggtgaccttccgccgcgtcctcaaaattaaggggagttgaaccttccattaaacgcatcttcttggagtgaaaaggacctcaaagacccaaaaaagctctatgagatgacagttcttcttaatgcacagagagaaatttctgaaaagatgctggatgcccagtgggaagcgaaatggagagaagaaaagcttaacaaaatgttggaggagaaagtacgaccatacattcagaatatcgacaatactgtactttctcaacctattgttatggagtcagaaaggaatcacgatcaaaagagaaagcatggacgaaggagatggtggttattttgattgtatttgcttagccagttcaattgctactagactcatgagaaatctaatgcttatagctacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="115634" stop="119882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115934" g_stop="116018" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116019" i_stop="116362" i_length="344">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116363" g_stop="116518" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="241" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116519" i_stop="117971" i_length="1453">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117972" g_stop="118079" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="349" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118080" i_stop="119476" i_length="1397">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119477" g_stop="119582" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="455" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E250737" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115934" e_stop="116018"/>
          <exon e_start="116363" e_stop="116518"/>
          <exon e_start="117972" e_stop="118079"/>
          <exon e_start="119477" e_stop="119582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTTCCTTACTTCAAGGCCAAGAAAACTCTGGAGGCAGAAGTCATGAAGCTTGACCCTCCGCCGCGTCCTCAAAATTGGGGGGTATGTTTTATCTTTACTAGAATTTCTTACTATTTCTAGTTACATTCTTGTTTAAATGCCCGCTATTTTCTGTATGGTTTATCTTGGAGTTATTGTGAATAACCATTGTACATTAGATAACTTGTTTTTCCGACAAAGTCCCCTTAGAAAAGCTAAAAAAGACGGGAAAGTTCTGCTTCTATCGGCTGTCTTAAGTGTGTATTAAAATTTCCTCCGCATCTTAAGTTCAAGTGATTAATTTGGAAGGTCAGCATGCTGTTGATTTGTCAGGAAGTTCTCTCTTGCTCTTCTATTGTTATTGTTATTTTCCTTATATTCATACGGGGTAATACAACCATTTGCAGGAGTTGAACCTTCCATTAAACGCATCTTCTTGGAGTGAAAAGGACCTCAAAGACCCAAAAAAGCTCTATGAGATGACAGTTCTTCTTAATGCACAGAGAGAAATTTCTGAAAAGATGCTGGATGCCCAGTGGGAAGCGAAATGGAGAGAAGAAAAGGTTGGTCTATCAGAGATTTCTTTTCCTGAAATGTCAGTAGAGAGTATTGAGAATTTCTAACCAACCCCAACTTGTTTAAGACTAAGGCTTAGTTGCTGTTTGTCTAGATACGAAGAGGGAAAAAAATGTCGTATGGGTTTCTGATTATTTTTTAACCCTGTTCATCTGGACAAATTTGACCTTTTCCCTTAAACATGGACACTTTAGTTTCCCTCATGATTTTACTGATTAAACTGCTAGGATAGAATTTGATGTTCTTGTTCAATCACAGAAGCGCGAAAAAAACAACAACAAACAAATTAGATGTATGGCTCCAGTTTCATAATAATAATTCAAAGATCCATAAATGTATGCCGCTTCTGAATTTCTTTTACCCTCTCTCTGTTTTGGTATTTTGCTTGCTTTGTAAAGTATTACATAGTGACTTCACTGAAGTACAATTTTTCTTTCTTGTGCCTGCTAGTTTGTGCTTTCAAGTTTGAACTGGTTAAGAATTTTCCTGATAATCAATACTCCTATTTTCTTTGCCTCAGATTGAATGACTTTATCTCCAGGAATGTAATATTTCTCCTATTCAATTTGTTTCTTGCTGAATGTAGAGAAGAAGTCTCTTAGTAGCTTACTCTTCTAAAAAAGTATTCAAAAGTTTAAAGTGTGTGGCAAAGTCCAATACAACTTGTAGCGCGAAGTATTATGAAGTGGCACCTTAACTAAATGATATTCAAGCAAAAGTCTTGACTATCTCCTTCAAATTTATTACCTGTAATATGTACATTCTTGAACTTCGTGAAAATGATTTTAAGCGTGTTCTAGACATGAGTCTTCAAGAGGTGCATTGATAATGCTTAGTAATGTTTGCATTAATTATACATAGATTTCTTATGCTTTATTTGCTTTGGTGTATTAAAAATAGCATGCATTGCATAAAAATATTTACTGACTAAAGAAACCCTTCACAATTATGTTCAAAAAGATGTAAAAAAGATTTTCAGGGGCAATAAGTCTTTAACTATGCTAATGCATGCATTAAAACCCCTTGCATTACTAATATCTAGAAATCCATGGTATTAGTAATACACATCTTAATGTACAATAGAGTGTACATTAGTTATACATAGCATGAAAAAATATACCAAACAAGATATTACTAATACACAGAGTTAATACATACATTACTTTTGCTAATACATTCTACCAAACAACCCCTTAAAGTTCTATCTCTGGAATGCAGATGACTGACAATACTGTATGTGTGGTACGGGTACCTTCTCTGGCATCTGAAACATGTATCTTGATTCATATTTTTTGTGTGTAGCTGGTGTCTACAATTTGATTGAACTAACAATTATCTCATATTTTCCCGATATCTTTTTGTCGGACAAATAAACATCTATATTACTGATATTAGTTGCTGATATGTTCTCTTCTCTGTTATTTTTTGTTCATATCTCAGCTTAACAAAATGTTGGAGGAGAAGGTACGACCATACATTCAGAATATCGACAATACTGTACTTCCTCAACCTATTGTTATGGAGTCAGAAAGGAATCAGGATCAAAAGGTACTTCTGCCTCTTTGACAAAATACTTTTTTTTTTGAATCCTAAGTGCTGAAAAACCATATTGACAAGAGTGAGATTAGATACAGAGTATGCCAAAAATTAATCAAACCTTAATGGTGTCTAGCACATCTAGGATTGATTTTGTATCCCCAGAGTACAATTTAGTACACCAAAAGCAAAATAATATAATACAATTTTGCTTAATCTTTTGTACTGAATTGCACCTCTCCTCAAAACATCTAGCATTCTTTCTTTCCAAATTGTCCACCATATACATGAAGGGATGATTTTCCATCTCTCCGATACCTGCTCCAGCTCCAGCTTCCTCCCAGCCAAAAGAGTGTCAGTAATCTTGCTTGGCATTGCCCATGCTATGCCCCTACAATTGATGAAAATCTTCCATAGCTGATCTGTGATACTACATTGTAGGAACAAGTGATTTATTGTCTCAGCTTCATTTTCACATAAGAAAAATCTTGAGCATAGTAATATCGTCCTCTTAATCAAAAACTCATGATTTAGGACAGCTTCTTTAGCTAGAACCAAGTAAATCATAAAACATGCAAACTTTTATGGAATCTCGGTCTTCTTCCAAGGCCAAAAAAATTCATTGGTTCTATTTGATTCAACAACTTACACCCTGAGCTGACTTTATAAAGTCCTTTAGGGTGTCCATTCCAGCACAAACAATCTACACCTTCTTGCGCCCCTTGAAAGCTCTCTATTTATTTGAATAGTTCAACCACTCTTGGGATCTCCCCATCATTCATCCCTCTTCTGAATCTCATATCCATCCTTGTTGAGTCCACATCTCAGCTACTGTTGTGTTGATCTTGGGCAAGGTCAAAAAGATTTGGGAACAATTCTTGCAATGACCTTGTCTCTATCCATTTATCTTTCCAGAACTTGGTCCTAACTCCATTGTGCACTCTGATCATTAAGTATTTTTCAAGATAAGCTCACAAGGCTCTCGTGGATCTCCACAAATTGACCTCATATGGACTGGTGACCTCCTTGGGTACCCAACAATCTTCTTCCCCGTACTTCCTTTTTATGACACTACTCCATAGGGTCTGAGGCTCTTGTGCATATCTCCATAGCCATTTCATCTTCAGGGCTCTGCACTGGTGTTATAGATTCGTGATGCCAACCCCACCAGCGAAACCTATTGCCAGTGAGAGCAAGATGTTTGCCTTCTCGGTATAGCTCATTGCACTGGGCTTGCCTAGAGCAAGTTACCTCTCCTGTATGATTTGTGAGTTATTGCATATGAGGGGTTTTTTCCTCTGTATGAACCCAAATTAATTGTGCACTTCACTTGTAGCCTTTTGTTTCAAGCCCCATTATCCGTTTCCGAAAGCAGTCACTTAAAGAATATGTATTAACTTTATGTGCAGAGAAAGCATGGACGAAGGAGATGGTGGTTATTTTGATTGTATTTGCTTAGCCAGTACAATTGCTACTAGACTCATGAGAAATCTAATGCTTATAGCTACTTTTTTT</genome_strand>
        <mrna_strand>AAACGTTCTTTACTTCAAGGCCAAGAAAACTCTGGAGGCAGAAGTCATGAGGGGTGACCTTCCGCCGCGTCCTCAAAATTAAGGG........................................................................................................................................................................................................................................................................................................................................................GAGTTGAACCTTCCATTAAACGCATCTTCTTGGAGTGAAAAGGACCTCAAAGACCCAAAAAAGCTCTATGAGATGACAGTTCTTCTTAATGCACAGAGAGAAATTTCTGAAAAGATGCTGGATGCCCAGTGGGAAGCGAAATGGAGAGAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAACAAAATGTTGGAGGAGAAAGTACGACCATACATTCAGAATATCGACAATACTGTACTTTCTCAACCTATTGTTATGGAGTCAGAAAGGAATCACGATCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCATGGACGAAGGAGATGGTGGTTATTTTGATTGTATTTGCTTAGCCAGTTCAATTGCTACTAGACTCATGAGAAATCTAATGCTTATAGCTACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547439" ref_strand="+" ref_description="SGN-E547439 [TUS-71-F4](-)">
      <seq>caacattggacatgttggagacatgttgtttgaggatgaagagatgatgatgccatccgaatcagcccgtagaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatatatttttgttttaactaaattcgtagagaatgatatattaagaagattaccaacaaaggaaataaattaactttttataagtttttttatttccctttctgttgtttaaactatactgtataccatcattgaatatgatttttgtaatttaagtatatggtgaaataaattacagattgtcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121321" stop="120166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121021" g_stop="120466" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="564"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E547439" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121021" e_stop="120466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAAT-AATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</genome_strand>
        <mrna_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTAACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAAC-A-AAGGAAATAAATTAACTTTTTATAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATCATTGAATATGATTTTTGT-AATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547440" ref_strand="+" ref_description="SGN-E547440 [TUS-71-F4]">
      <seq>caacattggacatgttggagacatgttgtttgaggatgaagagatgatgatgccatccgaatcagcccgtagaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatatatttttgttttaactaaattcgtagagaatgatatattaagaagattaccaacaaaggaaataaattaactttttataagtttttttatttccctttctgttgtttaaactatactgtataccatcattgaatatgatttttgtaatttaagtatatggtgaaataaattacagattgtcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121321" stop="120166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121021" g_stop="120466" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="564"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E547440" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121021" e_stop="120466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAAT-AATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</genome_strand>
        <mrna_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTAACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAAC-A-AAGGAAATAAATTAACTTTTTATAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATCATTGAATATGATTTTTGT-AATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549529" ref_strand="+" ref_description="SGN-E549529 [TUS-71-E4]">
      <seq>caacattggacatgttggagacatgttgtttgaggatgaagagatgatgatgccatccgaatcagcccgtagaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatatatttttgttttaactaaattcgtagagaatgatatattaagaagattaccaacaaaggaaataaattaactttttataagtttttttatttccctttctgttgtttaaactatactgtataccatcattgaatatgatttttgtaatttaagtatatggtgaaataaattacagattgtcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121321" stop="120166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121021" g_stop="120466" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="564"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E549529" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121021" e_stop="120466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAAT-AATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</genome_strand>
        <mrna_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTAACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAAC-A-AAGGAAATAAATTAACTTTTTATAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATCATTGAATATGATTTTTGT-AATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547398" ref_strand="+" ref_description="SGN-E547398 [TUS-71-E4](-)">
      <seq>caacattggacatgttggagacatgttgtttgaggatgaagagatgatgatgccatccgaatcagcccgtagaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatatatttttgttttaactaaattcgtagagaatgatatattaagaagattaccaacaaaggaaataaattaactttttataagtttttttatttccctttctgttgtttaaactatactgtataccatcattgaatatgatttttgtaatttaagtatatggtgaaataaattacagattgtcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121321" stop="120167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121021" g_stop="120470" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="563"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E547398" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121021" e_stop="120470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAAT-AATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATTGTC</genome_strand>
        <mrna_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTAACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAAC-A-AAGGAAATAAATTAACTTTTTATAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATCATTGAATATGATTTTTGT-AATTTAAGTATATGGTGAAATAAATTACAGATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222907" ref_strand="+" ref_description="SGN-E222907 [cLEL-38-M6](-)">
      <seq>atgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtgcacgcccaaatagttgaaattaattaacgtataaaatgcatgtatggaatattaatattaatatttcatgcatgcatgcgttaacgctaaaaatatatttagaaatacatgagttggtaacttcttttttttgataaactactatatatatttttgtttttactaaattcgtagagaatgatatattaagaagattaccaacaacaaggaaataattaactttttacaagtttttttatttccctttctgttgtttaaactatactgtataccattattgaatatgatttttgtaaatttaagtatatggtgaaataaattncagattgtaaatgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121162" stop="120167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120862" g_stop="120473" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="414"/>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E222907" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120862" e_stop="120473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAATAATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATT</genome_strand>
        <mrna_strand>ATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGCACGCCCAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAATAATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTNCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362359" ref_strand="+" ref_description="SGN-E362359 [cLPP-10-B13]">
      <seq>tgtaatttatttcaccatggggttaaattacaaaaatcatattcaatgatggtatacagtatagtttaaacaacagaaagggaaataaaaaaacttataaaaagttaatttatttcctttgttggtaatcttcttaatatatcattctctacgaatttagttaaaacaaaaatatatatagtagtttatcaaaaaaaagaagttaccaattcatgtttttctaaatatatttttatcgttaacgcatgcatgcatggaatattaatattaatattcgatgcatgcatttatacgttaattaattttaactatttgtgcgtccacaaccagtaattctttgacaaccacgtctataaggattaatttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="120199" stop="121149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120477" g_stop="120849" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E362359" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120477" e_stop="120849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTTATTTCACCATATACTTAAATTTACAAAAATCATATTCAATAATGGTATACAGTATAGTTTAAACAACAGAAAGGGAAATAAAAAAACTTGTAAAAAGTTAA-TTATTTCCTTGTTGTTGGTAATCTTCTTAATATATCATTCTCTACGAATTTAGTAAAAACAAAAATATATATAGTAGTTTATCAAAAAAAAGAAGTTACCAACTCATGTATTTCTAAATATATTTTTAGCGTTAACGCATGCATGCATGAAATATTAATATTAATATTCCATACATGCATTTTATACGTTAATTAATTTCAACTATTTGTGCGTCCACAACCAGTAATTCTTTGACAACCACGTCTATAAGGATTAATTTTTGA</genome_strand>
        <mrna_strand>TGTAATTTATTTCACCATGGGGTTAAA-TTACAAAAATCATATTCAATGATGGTATACAGTATAGTTTAAACAACAGAAAGGGAAATAAAAAAACTTATAAAAAGTTAATTTATTTCC-T-TTGTTGGTAATCTTCTTAATATATCATTCTCTACGAATTTAGTTAAAACAAAAATATATATAGTAGTTTATCAAAAAAAAGAAGTTACCAATTCATGTTTTTCTAAATATATTTTTATCGTTAACGCATGCATGCATGGAATATTAATATTAATATTCGATGCATGCA-TTTATACGTTAATTAATTTTAACTATTTGTGCGTCCACAACCAGTAATTCTTTGACAACCACGTCTATAAGGATTAATTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361622" ref_strand="+" ref_description="SGN-E361622 [cLPP-12-G19]">
      <seq>aacattggacatgttggagacatgttgtttgaggatgaagagatgatgatgccatccgaatcagcccgtagaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatatatttttggtttaactaaattcgtagagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121320" stop="120320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121020" g_stop="120620" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E361622" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121020" e_stop="120620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGA</genome_strand>
        <mrna_strand>AACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGGTTTAACTAAATTCGTAGAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364044" ref_strand="+" ref_description="SGN-E364044 [cLPP-16-L23]">
      <seq>caacattggacatgttggagacatgtggtttgaggatgaagagatgatgattccatccgaatcagcccggaaaacactcgatgagcgcgatcacatcggttatagagcgttgagggcaaataatattccatgcgatcaacgcggtgcgtcttattatcaatgtaatcgtatgtcaaaaattaatccttatagacgtggttgtcaaagaattactggttgtggacgcacaaatagttaaaattaattaacgtataaatgcatgcatcgaatattaatattaatattccatgcatgcatgcgttaacgataaaaatatatttagaaaaacatgaattggtaacttcttttttttgataaactactatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="121321" stop="120351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121021" g_stop="120651" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E364044" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121021" e_stop="120651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATA</genome_strand>
        <mrna_strand>CAACATTGGACATGTTGGAGACATGTGGTTTGAGGATGAAGAGATGATGATTCCATCCGAATCAGCCCGGAAAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCAAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATCAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTAAAATTAATTAACGTAT-AAATGCATGCATCGAATATTAATATTAATATTCCATGCATGCATGCGTTAACGATAAAAATATATTTAGAAAAACATGAATTGGTAACTTCTTTTTTTTGATAAACTACTATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365770" ref_strand="-" ref_description="SGN-E365770 [cLPT-8-N24]">
      <seq>tccggcggacatcaattcgccagctggcgcaccagagaacccctattcgtttgcagtgaaggcctttactccatcagttgcacttgtgtcagccgtttcactcgttttaactgtgactttagcagaatttattactttaccttagggtaaaattattagatattatatttaatttgtgtttttttctttttttttctttttttttggttactgtattttgtttttaatttcttgaataattcggagatcattggcgtgtttttagaaaaaaaaaaaaaaaaaactcaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131618" stop="108039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131318" g_stop="131111" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131110" i_stop="123573" i_length="7538">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.730" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123572" g_stop="123490" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="291" r_length="82" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E365770" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365770" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131318" e_stop="131111"/>
          <exon e_start="123572" e_stop="123490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTG-TTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTTGTTTCGTTAGAGAACATTTATAGTGAATTTTTAAATCATGCACAAATATAACTTATCATCCTTCTTATATAAAAAAATAATTTTATTTAAGTTTTTAGCGATCAATTTACGAAGGTATTAAGTGTTTCCTCCTTCAAAAATTAAATTGTCTACCAACAATCCAAATGTTCGAAAGTAAGACTTTTTCCTTCGTTTTTATTGTCTAAATCAAAATCTCTATATACATTGTTATAATCTTTCAGAATTATCTTTCGTTTAAAAAAAATTTTAAAAAAATGATTTTGAAAACAAAACAAAAAAATATAAAATTATCTACATCTTAAAAAAAATAAAAAAAATGATAGACTATTTGACAAATACGTAAAAATATCGCTCAAATATAACTGTTTCCCGGTGGAAGTTATAGAAATTCTTATAAAGTCAAAGTCATGCAATACGTTCCAAATATAAATTTATTAACGTACCGATGTGAAGTCGTCTCTTTTCTTCGTTTACTCATTATGTGCGTAAACTTTGGTGTAATAATAATAACAAGATGACTTGAATTGAAGTGGTTTTTTCCATTTATCTTAAAATAAATATCATCTTAATAAAAATAATAGAGGGAGTATTAATTTTTGTTGACTAGCCTTCCAAAAATTAATGTGATTTATTACTGATATAAATAGTCCAACTACAAAAAAGGGTGCAGTATGAAACTGCTCCATCTGTCACAACGTTTTGAAATTTAATTGTTTTCGAAAAAATTAAAGTGAACATTGTGATTTTGAAAGGTATTATTTTTTTTGTTTTTATTTATATATCGTATCGTTTTTAATAAAAATATAATTGATATTATTTCTTCCCGACTTCATATAAAGGATCCGTTTAGTCGTAGATTTTTCAAATAATATTTGGGGAAGAATTTGGTAAATAATATTTGTCTATATAATTTGTCATTATTTGGCAAACATTTTTGGCAAATATCTCAAATTTCCAAATACTAATTTTATTTTATTTTTTGTATTTGGGTCAAATCTCATTATTTGGAATCTTTTGAAAATTAAAATTTTACCCCAAACTTTTATCTTTTACAAAAACACCCTCTATAGTAGTTTTTGTTGTATTACATAATCTTTTTACGTGAACACCAAAATAGTGATGAAATATTTAGAGAATATTAAATAATGATATGATTGCTGATGAAAATGATGAAAAATTAACTCAAGGTAATAAAATCATGTGCTTCATCTACTTCACCATGTATGGAATGATACTTGTTGCACTCGCTCCAAATTACCACATTACTCTAGTGTGATGAAAACTATTTGTTATTGTTGTAACGAACATCCAATTGACTTGTAATACAAACTTATAGTTAGTTTTAATAGTTTTTAAAACTTATGAGTATAAATCATATTTTTATAAAAAGATGAAATATATTTCCCAAATCCTATGGCCAAACACATGGTGAAATTTCACCCAAATTTTCACTCAAATAATATTTGCTAAGAATATTTGAAAATTCATGGTCAAACGCTAGCAAAGTTTCTTTTTATAAATAGCTGAATTACAATATTTGTCATTTTATAAAATTTATATATAAATTATCATATTTTATCTATTATACCCATGATAGTATAGTTAATTAATCTTGTCATTTATTAATAAAATTGATTTAAGAAAACATTAAATAAGAATAGATTATATCATTTCTGTATGCAAATACAAAATAAAAAGATGACATATAAAATGAAACAAATAAAAAATATATATACTCCATATAAATTATTATCTCGAGAGTTATTAGATTTGAAAATATATAATCACTTTATCATTTTAATTAATCAAGTAGTATACTTTTAGTTCATATTACTTGTTCGTTACTTGTTTAGTTTTAAAATTTTAAAAAAAAATATTTATTTTTTATTTTTTAATTTTACTCTTATTACTCTATTAATTATAATTGTTTATTAAAGTATTAATTTATTACATTTAAATAGTGATGTGATAAATTGTCTAATTGATCCTCGTGTCAAAATAAATTGGAAGGGGGATAAACTTTTCCTCCATGCCACTTGTTGGTTGGTAAGTAGTTACATTAATTAGCCTATACATTGATTTTTCATAAATTATTTATCTGATGTCCTGATATTTATATTGTAATTTGATTATTTTGAATACGTGCCATATTGTGCTTTATTCGGAGGAAGCGCTCTCTAAAAAAATTCATACGTATAAAATCTTTAATTAAGAGAGAATCGATTTTATAATTCACTACACCATATCGTTTAGTGATACAATTTTTGCATTCACTTCTCTACTTATCCTATCTTACTATTGTATGAATTGATGTATTTTGTTATAATTTCCATTTAAACATAAGAAAGTACATTTTAAACAAATCGATAAGTAATGTGGGTTATAGACTAGGTTGATATGGAGTGGCGGATTCAAAAATTTAATTAAGAGAGCTAGAAAAGGAATTTGGACTTAGAGATTTTCAGAAAATTTTACTGAAATTTCTGACGAATGAAACAGTCTTTGTATAAAATTTTAAAAAATACTTTATATATACAATATAATTTCTGCATCTAGATAACTTTTTTTTAATAAGAATATATGCTACTTGCTTATAATGGAATTTAATATTCCTACTTATGTGGTGGAACTTGAATTTTAACTATATATTAATATGAAATTATCTTTAAAAGAATTATCAAATCTATGAAACTTGACAATTCAAGGAGAATCCAATTCTCTGCAGCATAAAAAGGTATTACAAAGCATTTATAAATGAAAAAAGAATTTTTGTTAATTAAAAGTAGGAAGTAAAAAAAATATATTTTAAAAAAAAGTTTAAGTAAAAGTCTAAAACATTTATTTTACTTTAGCAGGGAACATAAGTAAAAGTAGAAAAGCACTAAAGAAATGCCCTTTTTTTTCTGTATTATTAATTGTCTCAAATGAAAGTGGGTGCCAATAAGATCATTTAAATATAAACCCACACATAACACCCTTTACACTAAAATTGGATTTCAAAGGGTATTTATTTGGGTTGTCTATGTATTTGAATTTAAAATTTATCGATTTGATTTATCAGTTATTAATTTGTAGATATATCAAACTGTTACTATAATCATTAAGATATCGTCTCATTAGTTATTGATTTGTCGCTATTGATCGTTATCAATTTGACTATTAAGATTTGACAATAATTTTTTTTTTGAAAATCACTTAGAATAAGGTGACAAATTAAAATAAATATGTACACATGAGATGACAAATCGCATTTTGCTCAAAAGCAAATATTGTCACATAATAAAATAACCGAGAGCTTGAGACAGTAAATAATAAAAGTATGAAACTAAAATCTAAGTCGAGGACTTTATATACCAAATGGTATAAATCTATTTTTTTTAAAATTTACTATCCGATTATCGGTACTTAACATATTAAGAATAAACTGCAAATCGTTAAAAACTGATAATTCGATAATCATAAAAAATCGAAACCATTACTAAAACTGCTAATCCAATAACCATTACCGACAAATCAATAAAAAAAAATTTAGTTTAGGTTATCAATTTTGGTTTGATTTTAAACAACCCTAATATATATACTTACTCTGGAGGAGGAAAATATTGTAAGTATTTTTTTAGAGTCATTTGATAGTTGATTAGAGTTATGCATTTATTAATAATGCAGGATTTAATTATAAGTGAATGATCTATATATTATTTTATGCAGATATTAGCTATGCAAAAATTAATTATTTATGTATTGGTTATTCCATCTTTTATTCGACATAAAATTATTACATAGTTTCCTCCATGAATTATAAGTTATGAAGATTTCTAAATTATTATTCGAACGTCGTATTATTTTATACATAAATAATTTATTTCCTATCTATTTACCAAATATTATTAATATTAATATTTTCAAATAAAATCATTTTTATTTTATTTTCATGACCAAACATCCTCTAATAAACATTTTGAGTACTAACATCAACTTTACAAGTGGACAAATATAAACAAAAATAACTAAATCTCGAAATAAATTTTATGATAAATCTATTTCATATTTCGTTAAAATAAAATTACTTAATAACTTATTTTGAAGTTAGTTATATCAAGATTGTAGTATTATTTTTTACTTTATATTAACAATGATTGAGTAATTAATTTTTAAATAATTCAACGTAAAATAACTTATTTTCGATGAAATGAGTGTGTGCGTATAAATGGGGCGTTTCGATTTGCCGACTTGTCATATATGATACCCTTTGACGTGTATCTTTCTATTTCAAATGTCATGCACTATTCATTCATCCATAACACAAAAAAACAACAATGAGATGCATCAATCAACAAGAGGTCCCTATATGAAAGGGAGAATGCTTGTATATATGTAAATTAAATGACAAAAATGGTAGATTATTTTTGAGGCATGTTGTGAGTAAGTTTCTTAATTATGCGTTTGATAAAAAATAAAAAAAAATAGGTGAAAATAAGTGTTTAGAGATGGAGACAGAGTCAGGATTTGAAGATTCTAGATCTTTTAAGATAATAATCTCTAAAATAATAAATTAATTATGAAATGAATTTTTTAAGACATGTTTAAACTAAGGAATTGGGCGATTTTCTCAGTTTTTTGTTCAGTGAAATTTTTACGATATTTTTTATAGGGAGTTAGGAGAGCAGTACATACAATCTCTCTATTTTTTTTTAAATAGATTTTTTGACATTTAAGGGGTCAATTTACTGCAAATAGGTGATTTTCTAAGTTTTTTCGTGTGTTGGTCCTTGAATATTGTGGTGATATGATCTCCACATGAATTTTTTGCAAAACCTTTATGATATGTTCTCAACGGAGGTGATGGAGTGGTACGTAAGTCTCACCATTTTTCATATTTCATTTTGGGCATTTGAGGACTAATTTACAGGATTTAATTAAATGATTTTCTCAGGTTTTATGTGTGTTATTTATGAATATTTTTGTTATATGACTTTCAAATTATTTATTTGAAAAATCTATATAGAACCTTCCGTAAAGAGTTTGGGAGCAGTACGTACAATTTCATCATTTTTAGAGTTACTTTTGACACTTTAGGGCTAATTTACAGGAATTAGAGTTTCTCAATTTTTGGTTTGTGGTAACTCATGAATATTCTTAATGATATGGTTTTGGATGATTTCTTTGTGAAACCTTTATGGAAGCCTTTCAAGGGAGTTGGAGGAGCATTATGTATAGTCCCATCATTTTAAAGACATTTTTTTGCGTGTAGGGGTCAACTTTGAGAAATTATGCGATTTTCTTGATTTTTTTTGTGTGTATTAGCCCATGGATGTTGACGTCTTCTAGCGCTCAGAATTAGGCTTTTTTCTAAAAAACTTTATGAGAACCTCCATAATGAGTTGGGAAACGTTGAGTATAGTCTATAATTTTTAAGACATATTTTTTCATTTAAGGGCCAACTTTGAGGAATTATGTGATTTCTTTGATTTTCGTGTGTATTAATCCATAAGTATTTCTCCCTAATCCATTACAGAGTGTTGCGTGTGTAAGACCACACGTACTTCTGCCCTAACTCATTATGGAGGGTGTCGTAAATTATTTTCAAATAAATCACTCGAAAACCTTTTCACCAAATTATTTATGAGCAATATACATGAAAAACTAAAGAAAATCGCTTAATTCCTAATAAATGACTCCTAAATATCCAAAATGGCGTGAATCATGGTGAGGTCATACATATTGCTCCTCCAACTTATTAGGTGTGTCTTTGTGAATTACCTCCGAACATTAACATGTGTTAAAAAAATCAAAAGCACCTAAAAATAAATTATCTAGACATCCTCAAAATATGTCGGAAAATCATAGAAGAAAACAAATTTACTAGAACTAGAATGCTGATGTGATATTGTACAAATTAATAATGAACATTATTGTTTACTAATAAACTCAATAAGTAATACTTCCTCCGTTTAAAAAAGAATGATCTCTTTTTCTTTTTAATCTGTTTAAAAAAGAATGACCTCTTTAAGGTCACAACATCAAAGGACAATTTTGTACATATGACATAACTTTAATTTAGGACCACAAGATTCAAAAGTCTTATTTATTCTCTTAAACTCCGTATCAAATTAAACCTAGTCATTCTTTGAGAAACGGATGAAATAGTTATTTGCAAAAGCCATCATAATAGTTGAAGATGAAAAGCTTTCGTAAAGAAAAAGAACATAAAACCCACCAAATAATATATTGCAATATATGAGACTGTGATATTCTTAATTAGAGGTCTTAGATTTGAGATTGAAGTATGAAAAAACTTCTAATATGAAATACTTTCATACAAAATAAGGCCCTATATATTATAAATTCGAATTAATCAAATTCCAATACAGATTGAGAAGCAAAAAATAGCATATGAAACTAATTCATTTTCTCAAATATGTGGCATTGGTTAGTTCACAAGAAAAAAATATCCCAAACCTTTAAAGTAGAACTTTCCACCCACAAGCCTCAGCCACACAACAGTGTAGTTACGTGACCACACGGTTTTTCTTTTCCTTATCCATCTCTGTTTTGTAGTGTCAACGCAGATTACGTAAATTCAGTAGAATTTAATATTTTTTGGATCGATTCATATATTTGAATTGAATTAAACGAACTAAACAAGATATTTTGATCAACTTACACTTGGATAAATTGAACGAGTTATAATTTCATGTCTAATTTTGTCGACTATGCTCAAATGTCTTTACGTGCCTACTAAATTTAAGTTCAACGTGTATATGCATTAAATTTGGAAGTAGGGACGATAGAAAATGTTGACTGCTGACTAATTGTTTCACATCGACAATTGACAACTTGGCCAAATTTAAAAGTTCTTGTTGTCGGCAAATTAAATAATTGTGTAATGTATGTGTTATTATAAAAATAAAATTTATTATTTTTATTTGATCTTTAACAATAATGATATATATTTGGGTTCTTGAGATTGAAAAGATATTAATTTGTAGGGTTTAATTTCATTCTCAACTCAAATAGTTTGAAATGTGATAAAAGATCACAATATCCATGTAAAAATATAATTGAAAAACTATATGAATTGGACAAAACCCAATACATTAGGGGTGATTGAAACCATAATCCAAAATAATTACATGAATGTCATGACGGTTGTACTATTCGCTGAACCACTGTTGATATCATCGGATTACATATATATTTTGATGATATCTATATGATGATATTTGTAATTATGATAGTATTAAGTAGTAATTGAGCAGTTTTATACTGAAAAGTTTCATCTTCCTCCTCGATGTCATCAAAATATATTAAGGAGTAATTGAATAGTGTTTTCACTTAAACGTTTCATCTCTTTCTTTGATAACATCAGAGTGTGTGTGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TCCGGCGGACATCAATTCGCCAGCTGGCGCACCAGAGAACCCCTATTCGTTTGCAGTGAAGGCCTTTACTCCATCAGTTGCACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTAGCAGAATTTATTACTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTTCTTTTTTTTTCTTTTTTTTTGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTAT-TTTGTTTTTAATTTCTTGAATAATTCGGAGATCATTGGCGTGTTTTTAGAAAAAAAAAAAAAAAAAACTCAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287851" ref_strand="-" ref_description="SGN-E287851 [cLES-19-G11]">
      <seq>agtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttcttttttttttactgtattttgtttttaatttcttgaataattcggagattattggcgtgtttttagatatacaatagatgtatttaatttttatttttttgcttttaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131720" stop="13556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131420" g_stop="131028" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131027" i_stop="130642" i_length="386">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130641" g_stop="130622" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="414" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E287851" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287851" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131420" e_stop="131028"/>
          <exon e_start="130641" e_stop="130622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTC-TTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTTGTTTCGTTAGAGAACATTTATAGTGAATTTTTAAATCATGCACAAATATAACTTATCATCCTTCTTATATAAAAAAATAATTTTATTTAAGTTTTTAGCGATCAATTTACGAAGGTATTAAGTGTTTCCTCCTTCAAAAATTAAATTGTCTACCAACAATCCAAATGTTCGAAAGTAAGACTTTTTCCTTCGTTTTTATTGTCTAAATCAAAATCTCTATATACATTGTTATAATCTTTCAGAATTATCTTTCGTTTAAAAAAAATTTTAAAAAAATGATTTTGAAAACAAAACAAAAAAATATAAAATTATCTACATCTTAAAAAAAATAAAAAAAATGA</genome_strand>
        <mrna_strand>AGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTA..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539157" ref_strand="-" ref_description="SGN-E539157 [TUS-58-M10](-)">
      <seq>tttttttttttttttttttttatctccgaattattcaagaaattaaaaacaaaatacagtaaaaaaaaaagaaaaaacacaaattaaatataatatctaataattttaccctaaggtaaaataataaattctgccaaagtcacagttaaaacgagtgaaacggctgacacaagtacaactgatggagtaaatgccttcactgcaaatgaatttgggttttctggtgcgccagctggcgtattgatgtccgccggagtattgctgccgccgggacctaaagcactacttcccggtgctccctccgatggtccgcctgccaatggtcctcctgccgatggtcccggtgacatacttactgttggtccgtctgccgccggtgcaatagcgcttccagatggtccgcctgccgacggtgcaataccgcttcctgacgatggtccgcctgctacaggtgaagaagaacctggtgtactagttgacggtccatttgctaccggagacattgccggagttacggtcgcaggagatggtggagatgcggttgaaccggaaggtgtaggtgatgagggttggtgatttacctgaacaaacagataaactatatgattcaatttacgttcaatacgttaaaaatcgaacgaaattaaacgttgaatccatcaaatcgaaattctacatttacctgcaggagtagataccggtgccccattaggtgacgatgcacccggtttagatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="108038" stop="132102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130655" g_stop="130673" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130674" i_stop="131083" i_length="410">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131084" g_stop="131802" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="740" r_length="721" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E539157" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539157" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130655" e_stop="130673"/>
          <exon e_start="131084" e_stop="131802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATTTTTTTGTTTTGTTTTCAAAATCATTTTTTTAAAATTTTTTTTAAACGAAAGATAATTCTGAAAGATTATAACAATGTATATAGAGATTTTGATTTAGACAATAAAAACGAAGGAAAAAGTCTTACTTTCGAACATTTGGATTGTTGGTAGACAATTTAATTTTTGAAGGAGGAAACACTTAATACCTTCGTAAATTGATCGCTAAAAACTTAAATAAAATTATTTTTTTATATAAGAAGGATGATAAGTTATATTTGTGCATGATTTAAAAATTCACTATAAATGTTCTCTAACGAAACAAAAACAAAAACCAGAATTAAACTGGTATACATAAATTCAAATTTTAAGTCTCACCCACAAAAATTAAAAGCAAAAAAATAAAAATTAAATACATCTATTGTATATCTAAAAACACGCCAATAATCTCCGAATTATTCAAGAAATTAAAAACAAAATACAGT-AAAAAAAAAGAAAAAACACAAATTAAATATAATATCTAATAATTTTACCCTAAGGTAAAATAATAAATTCTGCCAAAGTCACAGTTAAAACGAGTGAAACGGCTGACACAAGTACAACTGATGGAGTAAATGCCTTCACTGCAAATGAATTTGGGTTTTCTGGTGCGCCAGCTGGCGTATTGATGTCCGCCGGAGTATTGCTGCCGCCGGGACCTAAAGCACTACTTCCCGGTGCTCCCTCCGATGGTCCGCCTGCCAATGGTCCTCCTGCCGATGGTCCCGGTGACATACTTACTGTTGGTCCGTCTGCCGCCGGTGCAATAGCGCTTCCAGATGGTCCGCCTGCCGACGGTGCAATACCGCTTCCTGACGATGGTCCGCCTGCTACAGGTGAAGAAGAACCTGGTGTACTAGTTGACGGTCCATTTGCTACCGGAGACATTGCCGGAGTTACGGTCGCAGGAGATGGTGGAGATGCGGTTGAACCGGAAGGTGTAGGTGATGA-GGTTGGTGATTTACCTGAACAAACAGATAAACTATATGATTCAATTTACGTTCAATACGTTAAAAATCGAACGAAATTAAACGTTGAATCCATCAAATCGAAATTCTACATTTACCTGCAGGAGTAGATACCGGTGCCCCATTAGGTGACGATGCACCCGGTTTAGATGATCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTCCGAATTATTCAAGAAATTAAAAACAAAATACAGTAAAAAAAAAAGAAAAAACACAAATTAAATATAATATCTAATAATTTTACCCTAAGGTAAAATAATAAATTCTGCCAAAGTCACAGTTAAAACGAGTGAAACGGCTGACACAAGTACAACTGATGGAGTAAATGCCTTCACTGCAAATGAATTTGGGTTTTCTGGTGCGCCAGCTGGCGTATTGATGTCCGCCGGAGTATTGCTGCCGCCGGGACCTAAAGCACTACTTCCCGGTGCTCCCTCCGATGGTCCGCCTGCCAATGGTCCTCCTGCCGATGGTCCCGGTGACATACTTACTGTTGGTCCGTCTGCCGCCGGTGCAATAGCGCTTCCAGATGGTCCGCCTGCCGACGGTGCAATACCGCTTCCTGACGATGGTCCGCCTGCTACAGGTGAAGAAGAACCTGGTGTACTAGTTGACGGTCCATTTGCTACCGGAGACATTGCCGGAGTTACGGTCGCAGGAGATGGTGGAGATGCGGTTGAACCGGAAGGTGTAGGTGATGAGGGTTGGTGATTTACCTGAACAAACAGATAAACTATATGATTCAATTTACGTTCAATACGTTAAAAATCGAACGAAATTAAACGTTGAATCCATCAAATCGAAATTCTACATTTACCTGCAGGAGTAGATACCGGTGCCCCATTAGGTGACGATGCACCCGGTTTAGATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713107" ref_strand="+" ref_description="SGN-E713107 [FB06DA02]">
      <seq>gtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttctttttttttactgtattttgtttttaatttcttgaataattcggagattattggcgtgtttttagatatacaatagatgtatttaatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131864" stop="13564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131564" g_stop="131043" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131042" i_stop="130674" i_length="369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130673" g_stop="130663" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="533" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E713107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131564" e_stop="131043"/>
          <exon e_start="130673" e_stop="130663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTTGTTTCGTTAGAGAACATTTATAGTGAATTTTTAAATCATGCACAAATATAACTTATCATCCTTCTTATATAAAAAAATAATTTTATTTAAGTTTTTAGCGATCAATTTACGAAGGTATTAAGTGTTTCCTCCTTCAAAAATTAAATTGTCTACCAACAATCCAAATGTTCGAAAGTAAGACTTTTTCCTTCGTTTTTATTGTCTAAATCAAAATCTCTATATACATTGTTATAATCTTTCAGAATTATCTTTCGTTTAAAAAAAATTTTAAAAAAATGATTTTGAAAACAAAACAAAAAA</genome_strand>
        <mrna_strand>GTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTT.................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733759" ref_strand="+" ref_description="SGN-E733759 [LB10DE02]">
      <seq>cggttccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttctttttttttactgtattttgtttttaatttcttgaataattcggagattattggcgtgtttttagatatacaatagatgtatttaatttttattttttttgcttttaatttttgtgggtgagacttaaaatttgaatttatgtataccagtttaattctggtttttgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132158" stop="130664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131858" g_stop="131745" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="130963" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="796" r_length="682" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E733759" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131858" e_stop="131745"/>
          <exon e_start="131643" e_stop="130963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTA-TTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTT</genome_strand>
        <mrna_strand>CGGTTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689444" ref_strand="+" ref_description="SGN-E689444 [t3_tus_84_N01]">
      <seq>cattgttgctccacctactccttctggaggctcaactccggctgctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttcttttttttttactgtattttgtttttaatttcttgaataattcggagataattgacgtgtttttagatatacaataaatgtatttaatttttatttttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132319" stop="130731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132023" g_stop="131995" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="158" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131031" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="772" r_length="614" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E689444" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132023" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTC-TTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTT</genome_strand>
        <mrna_strand>CATTGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCTGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATAATTGACGTGTTTTTAGATATACAATAAATGTATTTAATTTTTATTTTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343105" ref_strand="+" ref_description="SGN-E343105 [cTOF-11-P2]">
      <seq>ttcttcttcacctggtagcaggcggacactcgtcatgaagcggtattgcaccgtcggcaggcggaccattctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggacccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttcttttttttttactgtattttgtttttaatttcttgaataattcggagattattggcgtgtttttagatataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131825" stop="130757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131525" g_stop="131052" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E343105" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131525" e_stop="131052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACCT-GTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCA-TCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGA-CCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTT-TTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTAT</genome_strand>
        <mrna_strand>TTCTTCTTCACCTGGTAGCAGGCGGACACTCGTCATGAAGCGGTATTGCACCGTCGGCAGGCGGACCATTCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277416" ref_strand="+" ref_description="SGN-E277416 [cLER-3-D23]">
      <seq>caacagtaagtatgtcaccgggaccatctgcaggaggaccattggcaggcggaccatcggagggagcaccggaaagtacagctttaagtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgatttttcttttttctttactgtattttgtttttaatttcttgaataatacagagattattggcgtgatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131724" stop="130770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131424" g_stop="131070" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E277416" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131424" e_stop="131070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTT-TTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTA</genome_strand>
        <mrna_strand>CAACAGTAAGTATGTCACCGGGACCATCTGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGAAAGTACAGCTTTAAGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGATTTTTCTTTTTTCTTTACTGTATTTTGTTTTTAATTTCTTGAATAATACAGAGATTATTGGCGTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333761" ref_strand="+" ref_description="SGN-E333761 [cTOD-22-B17]">
      <seq>ttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttcttttttttttactggattttgtttttaatttcttgaataattcggagattattggcgtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132318" stop="130771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132018" g_stop="131995" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="153" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131071" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="727" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E333761" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132018" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTC-TTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTT</genome_strand>
        <mrna_strand>TTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTTACTGGATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280663" ref_strand="+" ref_description="SGN-E280663 [cLEL-6-C13](-)">
      <seq>agtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattgtgagatattatatttaatttgtccccctcttttttttttactgtatttatataaataatttcttgaataattcctcgtgccgaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131650" stop="130813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131350" g_stop="131092" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E280663" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131350" e_stop="131092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTT-TGTTTTTAATTTCTTGAATAATTC</genome_strand>
        <mrna_strand>AGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTGTGAGATATTATATTTAATTTGTCCCCCTCTTTTTTTTTTACTGTATTTATATAAATAATTTCTTGAATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359002" ref_strand="+" ref_description="SGN-E359002 [cLHT-24-P16]">
      <seq>gggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctactccttccggttcaaccgcatctccaccatctcctgcgaccgtagttccggcaatgtctccggtagcaaatggaccgtcatctagtactccaggttcttcttcacctttagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcagacggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatatcaccgggaccatcggcaggaggaccattggcaggcggaccatcggcgggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacattaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattttagatattatatttaatttgtgttttgctctttttttttctttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132088" stop="130837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131788" g_stop="131745" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131111" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="576" r_length="532" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E359002" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131788" e_stop="131745"/>
          <exon e_start="131643" e_stop="131111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTT</genome_strand>
        <mrna_strand>GGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACTCCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAGTTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCATCTAGTACTCCAGGTTCTTCTTCACCTTTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGACGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATATCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGCGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATTAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATT-TTAGATATTATATTTAATTTGTGTTTTGCTCTTTTTTTTTCTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390308" ref_strand="+" ref_description="SGN-E390308 [TUS-17-E1](-)">
      <seq>atcaaggtaacccaccacaaactccggcaccggcagttgctccacatactctttctggaggctcaatcccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacgtaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttgttcttcacctgtagcaggcggaccattgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaatttgtgttttttctttttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132354" stop="28830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132054" g_stop="131995" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="189" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131115" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="718" r_length="529" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E390308" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132054" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTT</genome_strand>
        <mrna_strand>ATCAAGGTAACCCACCACAAACTCCGGCACCGGCAGTTGCTCCACATACTCTTTCTGGAG.........................................................................................................................GCTCAATCCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACGTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTGTTCTTCACCTGTAGCAGGCGGACCATTGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294616" ref_strand="+" ref_description="SGN-E294616 [cLET-22-A16]">
      <seq>tcacctaatggggcaccggtatctactcctgcaagtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaagcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttacgtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaacgcatttactccatcagttgtacttgtgtcagccgcttcactcgttttaactgtgactttggcagaatttattattttaccttacggtaaaattattagatattatatttaatttgcgttttttctttttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132078" stop="130825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131778" g_stop="131745" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131123" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="555" r_length="521" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E294616" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131778" e_stop="131745"/>
          <exon e_start="131643" e_stop="131123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTAC</genome_strand>
        <mrna_strand>TCACCTAATGGGGCACCGGTATCTACTCCTGCAA.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAAGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTACGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAACGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGCTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTACGGTAAAATTATTAGATATTATATTTAATTTGCGTTTTTTCTTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295028" ref_strand="+" ref_description="SGN-E295028 [cLET-40-E17]">
      <seq>gtcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaagtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttaaggtaaaattattagatattatatttaatttgtgttttttctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132081" stop="130825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131782" g_stop="131745" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131124" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="558" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E295028" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131782" e_stop="131745"/>
          <exon e_start="131643" e_stop="131124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTA</genome_strand>
        <mrna_strand>GTCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAAGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAAGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344264" ref_strand="+" ref_description="SGN-E344264 [cTOF-16-I1]">
      <seq>tcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcnagaattattattttaccttanggtaaaattattagatattatatttaatttgtgttttttcttttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132081" stop="130824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131781" g_stop="131745" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131124" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="557" r_length="520" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E344264" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131781" e_stop="131745"/>
          <exon e_start="131643" e_stop="131124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTA</genome_strand>
        <mrna_strand>TCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCNAGAATTATTATTTTACCTTANGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297916" ref_strand="+" ref_description="SGN-E297916 [cLET-38-M20]">
      <seq>tcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggtaaaattattagatattatatttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132078" stop="130846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131778" g_stop="131745" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131146" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="532" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E297916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131778" e_stop="131745"/>
          <exon e_start="131643" e_stop="131146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAAT</genome_strand>
        <mrna_strand>TCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286306" ref_strand="+" ref_description="SGN-E286306 [cLES-11-P20]">
      <seq>caacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatcggagggagcaccgggaagtagtgctttaggtcccggcggcagcaatactccggcggacatcaatacgccagctggcgcaccagaaaacccaaattcatttgcagtgaaggcatttactccatcagttgtacttgtgtcagccgtttcactcgttttaactgtgactttggcagaatttattattttaccttagggggtaaatattagatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="131934" stop="130872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131634" g_stop="131153" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E286306" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131634" e_stop="131153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTAT</genome_strand>
        <mrna_strand>CAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGGGTAAATATTAGATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299296" ref_strand="+" ref_description="SGN-E299296 [cLET-43-L17]">
      <seq>tacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatcttcaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtccgcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccgggaccatcggcaggaggaccattggcaggcggaccatccgagggagcacctggaagtagtgctttaagtcccagcggcagcaatactccggcggacatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132136" stop="131002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131836" g_stop="131745" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131643" g_stop="131302" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="434" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E299296" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131836" e_stop="131745"/>
          <exon e_start="131643" e_stop="131302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATA</genome_strand>
        <mrna_strand>TACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTTCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCCGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCCGAGGGAGCACCTGGAAGTAGTGCTTTAAGTCCCAGCGGCAGCAATACTCCGGCGGACATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295521" ref_strand="+" ref_description="SGN-E295521 [cLET-23-B23]">
      <seq>gaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132492" stop="131105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132192" g_stop="131995" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="327" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131405" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="566" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E295521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132192" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCG</genome_strand>
        <mrna_strand>GAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730698" ref_strand="+" ref_description="SGN-E730698 [LA24DF08]">
      <seq>gaaaatattgcccctgtctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcccctaatggggcaccggtatctactcccaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcactgtctccggtagcacatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgccggcaggcggaccatctggaagcgctattgcaccggcggcagacggaccaacagtaagtatgtcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132869" stop="131106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132570" g_stop="132389" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="452" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="579" r_length="127" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131643" g_stop="131406" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="817" r_length="238" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E730698" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132570" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACC</genome_strand>
        <mrna_strand>GAAAATATTGCCCCTGTCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCCCCTAATGGGGCACCGGTATCTACTCC--CAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCACTGTCTCCGGTAGCACATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGCCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200490" ref_strand="+" ref_description="SGN-E200490 [cLEB-8-H14]">
      <seq>gcacgagttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcaccgtcggcaggcggaccatctggaagcgctattgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132454" stop="131139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132162" g_stop="131995" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="296" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131439" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="501" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E200490" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132162" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACC</genome_strand>
        <mrna_strand>GCACGA-GTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339111" ref_strand="+" ref_description="SGN-E339111 [cTOF-6-C16]">
      <seq>tcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcangcggaccatcgtcagaaagcggtattgcaccgtcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132852" stop="131169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132552" g_stop="132389" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="434" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="563" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131643" g_stop="131469" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="738" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E339111" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132552" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGC</genome_strand>
        <mrna_strand>TCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCANGCGGACCATCGTCAGAAAGCGGTATTGCACCGTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295426" ref_strand="+" ref_description="SGN-E295426 [cLET-23-B24]">
      <seq>gaaatccaattaagaaaatgtaggatggaaactcgattttcacgttggatgggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagcaggcggaccatcgtcaggaagcggtattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132492" stop="131176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132192" g_stop="131995" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="327" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131476" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="495" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E295426" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132192" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCAC</genome_strand>
        <mrna_strand>GAAATCCAATTAAGAAAATGTAGGATGGAAACTCGATTTTCACGTTGGATGGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200525" ref_strand="+" ref_description="SGN-E200525 [cLEB-8-H15]">
      <seq>gcacgagttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcaggtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtctccggtagcaaatggaccgtcaactagtacaccaggttcttcttcacctgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132454" stop="131208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132162" g_stop="131995" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="296" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131643" g_stop="131508" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="432" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E200525" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132162" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGC</genome_strand>
        <mrna_strand>GCACGA-GTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347384" ref_strand="+" ref_description="SGN-E347384 [cTOF-33-L10]">
      <seq>agagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctactcctgcangtaaatcaccaacctcatcacctacaccttccggttcaaccgcatctccaccatctcctgcgaccgtaactccggcaatgtcttcggtagcaaatggaccgtcaactagtacaccaggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132877" stop="131223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132577" g_stop="132389" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="459" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="588" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131643" g_stop="131523" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="709" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E347384" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132577" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTC</genome_strand>
        <mrna_strand>AGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAN.....................................................................................................GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTTCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340311" ref_strand="+" ref_description="SGN-E340311 [cTOF-2-A12]">
      <seq>aagaactattttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacctaatggggcaccggtatctacntctgcaggtaaatcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132982" stop="131439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132682" g_stop="132389" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="564" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="693" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131643" g_stop="131632" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="705" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E340311" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132682" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131745"/>
          <exon e_start="131643" e_stop="131632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAGGTAAATGTAGAATTTCGATTTGATGGATTCAACGTTTAATTTCGTTCGATTTTTAACGTATTGAACGTAAATTGAATCATATAGTTTATCTGTTTGTTCAGGTAAATCACCAA</genome_strand>
        <mrna_strand>AAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACNTCTGCAG.....................................................................................................GTAAATCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285112" ref_strand="+" ref_description="SGN-E285112 [cLER-20-G19]">
      <seq>tctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctccggcgggatcatctaaaccgggtgcatcgtcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132963" stop="131473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132663" g_stop="132389" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="545" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131773" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="646" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E285112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132663" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCT</genome_strand>
        <mrna_strand>TCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333430" ref_strand="+" ref_description="SGN-E333430 [cTOD-20-N10]">
      <seq>ttttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggctcaactccggcagctgctccgtctaaaggatcgggtacaccgtcggcaccttcagctaacgctcccggcgggatcatctaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132974" stop="131489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132674" g_stop="132389" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="556" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131789" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="642" r_length="86" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E333430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132674" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCT-CCGGCGGGATCATCTAAACC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCCGGCGGGATCATCTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333819" ref_strand="+" ref_description="SGN-E333819 [cTOD-22-L2]">
      <seq>tttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctangaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggcnntcactcggcagctgctccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132973" stop="131694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132673" g_stop="132389" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="131995" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="555" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131873" g_stop="131850" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="579" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E333819" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132673" e_stop="132389"/>
          <exon e_start="132264" e_stop="131995"/>
          <exon e_start="131873" e_stop="131850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGCTCAACTCCGGCAGCTGCTCCGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTANGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG.........................................................................................................................GCNNTCACTCGGCAGCTGCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539160" ref_strand="+" ref_description="SGN-E539160 [TUS-58-M10]">
      <seq>tttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttcgtaagtcttaacatgtctctctttatttattattgcttgaagagttcgaacaatataattggtaaacgagttttttctatatgttgatactttttttttgtgtgtgtatgtgcgctttttttagtgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcagttgctccacctactccttctggaggtacgcggaatcaggatttttattttattccccgttgacatttgcttatgtggtttgcgagttattgtatctgaaggtaaaaattacatgattcgattgagaacttacgtgattaatgcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132969" stop="131572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132669" g_stop="131872" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E539160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132669" e_stop="131872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGC</genome_strand>
        <mrna_strand>TTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289659" ref_strand="+" ref_description="SGN-E289659 [cLET-4-F18]">
      <seq>tttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132935" stop="131719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132635" g_stop="132389" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132019" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="493" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E289659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132635" e_stop="132389"/>
          <exon e_start="132264" e_stop="132019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAG</genome_strand>
        <mrna_strand>TTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365507" ref_strand="+" ref_description="SGN-E365507 [cLPT-2-N10]">
      <seq>gaagaactaatttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgtttacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctattgattacaacacttggtctcaacatatgagatttataatcaacgactctgttctgtttaagtataagcaaggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccgggagttgctccacctagtaatggatcaactacaccaccatctactccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132980" stop="131705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132683" g_stop="132389" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132023" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="533" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E365507" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132683" e_stop="132389"/>
          <exon e_start="132264" e_stop="132023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCG</genome_strand>
        <mrna_strand>GAAGAACTA-AT-TTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTC--ATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTTACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTATTGATTACAACACTTGGTCTCAACATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAAGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363852" ref_strand="+" ref_description="SGN-E363852 [cLPT-10-B12]">
      <seq>ttctatttctcgtgacttttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgtttacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctattgattacaacacttggtctcaacatatgagatttataatcaacgactctgttctgtttaagtataagcaaggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccggcaccgggagttgctccacctagtaatggatcaactacaccaccatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132964" stop="131705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132664" g_stop="132389" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132023" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="516" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E363852" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132664" e_stop="132389"/>
          <exon e_start="132264" e_stop="132023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCG</genome_strand>
        <mrna_strand>TTCTATTTCTCGTGACTTTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCA--TTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTTACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTATTGATTACAACACTTGGTCTCAACATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAAGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292566" ref_strand="+" ref_description="SGN-E292566 [cLET-16-K20]">
      <seq>tttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaattgttgtgatttctgctaggaatcaaggtaaaccaccacaaactccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132971" stop="131729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132671" g_stop="132389" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132029" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="519" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E292566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132671" e_stop="132389"/>
          <exon e_start="132264" e_stop="132029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCG</genome_strand>
        <mrna_strand>TTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326940" ref_strand="+" ref_description="SGN-E326940 [cTOC-18-N5]">
      <seq>agacttctcgtgaagaactattttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataactgtgataaaggccaaaagttgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132994" stop="131775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132694" g_stop="132389" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132075" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="496" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E326940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132694" e_stop="132389"/>
          <exon e_start="132264" e_stop="132075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAAT</genome_strand>
        <mrna_strand>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324060" ref_strand="+" ref_description="SGN-E324060 [cTOC-3-O3]">
      <seq>agaactattttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttctgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttactttatcagtgggaacaaagataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132981" stop="131800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132681" g_stop="132389" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132100" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="458" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E324060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132681" e_stop="132389"/>
          <exon e_start="132264" e_stop="132100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACT</genome_strand>
        <mrna_strand>AGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334452" ref_strand="+" ref_description="SGN-E334452 [cTOD-23-M5]">
      <seq>ttttaacctttctattgtttctttctagacttctcgtgaagaactattttttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttcgtaagtcttaacatgtctctctttatttattattgcttgaagagttcgaacaatataattggtaaacgagttttttctatatgttgatactttttttttgtgtgtgtatgtgcgctttttttagtgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggnctggtcctttttactttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="133020" stop="131819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132720" g_stop="132119" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E334452" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132720" e_stop="132119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACCTTTCTATTGTTTCTTTCTAGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATC</genome_strand>
        <mrna_strand>TTTTAACCTTTCTATTGTTTCTTTCTAGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGNCTGGTCCTTTTTACTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367786" ref_strand="+" ref_description="SGN-E367786 [cLPT-14-B4]">
      <seq>gaagaactaatttttttttctatttctcgcgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgtttacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctattgattacaacacttggtctcaacatatgagatttataatcaacgactctgttctgtttaagtataagcaaggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttctacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132980" stop="131821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132683" g_stop="132389" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132121" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="435" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E367786" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132683" e_stop="132389"/>
          <exon e_start="132264" e_stop="132121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTA</genome_strand>
        <mrna_strand>GAAGAACTA-AT-TTTTTTTTCTATTTCTCGCGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTC--ATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTTACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTATTGATTACAACACTTGGTCTCAACATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAAGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTCTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366505" ref_strand="+" ref_description="SGN-E366505 [cLPT-13-B22]">
      <seq>tttttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgtttacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctattgattacaacacttggtctcaacatatgagatttataatcaacgactctgttctgtttaagtataagcaaggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatcggtctggtcctttttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132971" stop="131822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132671" g_stop="132389" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132264" g_stop="132122" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="424" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E366505" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132671" e_stop="132389"/>
          <exon e_start="132264" e_stop="132122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTT</genome_strand>
        <mrna_strand>TTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTC--ATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTTACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTATTGATTACAACACTTGGTCTCAACATATGAGATTTATAATCAACGACTCTGTTC............................................................................................................................TGTTTAAGTATAAGCAAGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279966" ref_strand="+" ref_description="SGN-E279966 [cLER-8-N15]">
      <seq>ttttttctatttctcgtgactcttttttagtgttttactttttatcaccacacaaaaagagtcatattgaactcaaattttgaaacaacaaagagaagaaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacgactctgttcgtaagtcttaacatgtctctctttatttattattgcttgaagagttcgaacaatataattggtaaacgagttttttctatatgttgatactttttttttgtgtgtgtatgtgcgctttttttagtgtttaagtataagcagggagcagattctgtgttggaggtgagtaaggatgattatgataagtgcaatactggaaatccaattaagaaaatggaggatggaaactcgattttcacgttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132968" stop="131842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132668" g_stop="132142" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E279966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132668" e_stop="132142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATC</genome_strand>
        <mrna_strand>TTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293832" ref_strand="+" ref_description="SGN-E293832 [cLET-37-A16]">
      <seq>aaaaatattgcccatggctcagcaaatacatgttgtagttttattcatgttggcttgtttgttcacaacttcatattcttatcaatttactgttggtggtaaagatggttgggtccttaacccttctgttgattacaacacttggtctcagcatatgagatttataatcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="-" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="132870" stop="132098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132570" g_stop="132398" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="-" ref_id="SGN-E293832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132570" e_stop="132398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACG</genome_strand>
        <mrna_strand>AAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688858" ref_strand="+" ref_description="SGN-E688858 [t3_tus_55_B16]">
      <seq>tctttatataataccaattacttaaacttaattgttctaattttattactgcatttcattgtaaagctaataatccactatttggatcttctcctgttatcaatgtatgtattttatttttaaaattataaggatttggtcctaatgatactaaatactgaaattctgatggcttcaaaacatagatcagcagccttcatggtaagaaatcataatgaaatagttagaggaaaaacatttatatctgaccatctattatcatatatggtaattaatgtctttgttcctaaattttttctagttaatcctttaattcctattactattaatcctaaatgcattaaattttttctaacatattttatttcttttacagattcttcatttatgaggggtaaagatacagagttttttcctaataccgataattgttcctctctataatgtctatataattgagattttgaatttgtattatataaaacttttggatttaataaatttaattgattctgttggaaaatttgtatatctttatctgtatctataatttcgtctaattgttgactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="144678" stop="145851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144978" g_stop="145551" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E688858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144978" e_stop="145551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTTCGTCTAATTGTTGACTATTTT</genome_strand>
        <mrna_strand>TCTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTTCGTCTAATTGTTGACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551070" ref_strand="+" ref_description="SGN-E551070 [TUS-55-B16]">
      <seq>tctttatataataccaattacttaaacttaattgttctaattttattactgcatttcattgtaaagctaataatccactatttggatcttctcctgttatcaatgtatgtattttatttttaaaattataaggatttggtcctaatgatactaaatactgaaattctgatggcttcaaaacatagatcagcagccttcatggtaagaaatcataatgaaatagttagaggaaaaacatttatatctgaccatctattatcatatatggtaattaatgtctttgttcctaaattttttctagttaatcctttaattcctattactattaatcctaaatgcattaaattttttctaacatattttatttcttttacagattcttcatttatgaggggtaaagatacagagttttttcctaataccgataattgttcctctctataatgtctatataattgagattttgaatttgtattatataaaacttttggatttaataaatttaattgattctgttggaaaatttgtatatctttatctgtatctataatttcgtctaattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="144678" stop="145844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144978" g_stop="145544" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E551070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144978" e_stop="145544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTTCGTCTAATTGTTGA</genome_strand>
        <mrna_strand>TCTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTTCGTCTAATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260038" ref_strand="+" ref_description="SGN-E260038 [cLEG-52-E4]">
      <seq>ctttatataataccaattacttaaacttaattgttctaattttattactgcatttcattgtaaagctaataatccactatttggatcttctcctgttatcaatgtatgtattttatttttaaaattataaggatttggtcctaatgatactaaatactgaaattctgatggcttcaaaacatagatcagcagccttcatggtaagaaatcataatgaaatagttagaggaaaaacatttatatctgaccatctattatcatatatggtaattaatgtctttgttcctaaattttttctagttaatcctttaattcctattactattaatcctaaatgcattaaattttttctaacatattttatttcttttacagattcttcatttatgaggggtaaagatacagagttttttcctaataccgataattgttcctctctataatgtctatataattgagattttgaatttgtattatataaaacttttggatttaataaatttaattgattctgttggaaaatttgtatatctttatctgtatctataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029N13-izmAP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0029N13.1" temp_strand="+" temp_description="C12HBa0029N13.1  AC235809.2 htgs_phase:1 submitted_to_sgn_as:gi|239735641|gb|AC235809.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29N13, WORKING DRAFT SEQUENCE, 9 unordered pieces">
        <position start="144679" stop="145830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144979" g_stop="145530" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029N13.1" gen_strand="+" ref_id="SGN-E260038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144979" e_stop="145530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTT</genome_strand>
        <mrna_strand>CTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>140</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2655" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2655" e_stop="2160"/>
            <exon e_start="1496" e_stop="1492"/>
            <exon e_start="764" e_stop="567"/>
            <exon e_start="485" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.600"/>
          <exon-intron don_prob="0.972" acc_prob="0.935" e_score="0.995"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2655" e_stop="2160" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="2159" i_stop="1497" i_length="663"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="1496" e_stop="1492" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1491" i_stop="765" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="764" e_stop="567" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.935">
            <gDNA_intron_boundary i_start="566" i_stop="486" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="485" e_stop="1" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2655" stop="2160"/>
              <exon start="1496" stop="1492"/>
              <exon start="764" stop="567"/>
              <exon start="485" stop="267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2653" stop="2160"/>
              <exon start="1496" stop="1492"/>
              <exon start="764" stop="567"/>
              <exon start="485" stop="329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2637" stop="2160"/>
              <exon start="1496" stop="1492"/>
              <exon start="764" stop="567"/>
              <exon start="485" stop="294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="433" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG : GGCCT : GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG : GGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTTCTTGTTGAAGCTT</gDNA_template>
            <first_frame> R  K  R  R  G  R  N  P  S  P  L  S  K  P  P  P  S  S  P  L  S  I  S  S  S  L  F  L  P  N  P  S  S  S  P  S  F  P  S  A  P  L  T  L  S  L  P  L  S  R  F  S  P  F  L  F  L  S  S  L  L  S  P  P  F  S  L  F  P  A  K  Q  R  Q  Q  P  S  S  S  *  D  S  L  Q  Q  Q  L  Q  Q  P  A  S  Q  A  A  P  P  S  P  S  S  P  A  K  Q  R  Q  Q  P  A  K  A  P  A  E  A  A  T  T  N  D  G  N  S  S  A  T  T  R  I  L  I  R  *  R  H  H  Q  R  Q  Q  L  Q  E  A  S  T  T  D  D  I  N  S  D  L  V  R  E  N  I  Q  I  C  P  K   : G  P  :  G  W  V  Q  E  M  A  S  F  V  K  S  L  D  N  K  L  E  V  E  I  E  G  F  Y  G  D  S  I  P  E  R  K  S  V  N  P  G  Y  Q  V  R  T  N  F  F  S  N  Q  L  I  N  E  I  D  F  C  Y  N  P  F  I  H  *  P  M  :  G  I  *  T  K  *  *  S  T  I  G  V  D  G  E  V  D  N  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  *  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  L  K  K  *  A  L  H  D  T  R  A  N  *  S  L  L  F  N  Q  V  G  *  S  C  *  V  *  L  V  R  N  L  L  G  S  *  L  V  K  Q  Y  M  Y  C  I  K  L  Q  Y  N  V  F  S  L  Y  S  S  F  L  Q  N  K  L  L  L  S  F  P  S  C  *  S   </first_frame>
            <second_frame>  E  R  E  E  G  E  T  L  P  P  S  P  S  R  L  L  L  L  P  S  P  S  P  L  L  S  S  S  Q  T  L  P  P  L  P  L  F  R  Q  P  L  S  P  F  P  S  L  F  P  V  S  P  P  S  S  S  S  P  L  F  Y  L  L  H  S  L  F  F  R  Q  S  S  D  N  N  P  A  A  A  E  T  A  Y  N  N  S  S  N  S  R  R  A  K  Q  R  R  P  L  P  L  L  R  Q  S  S  D  S  N  R  Q  K  L  R  L  K  Q  Q  Q  Q  T  T  E  I  A  A  P  P  L  A  Y  L  S  G  E  D  T  I  S  V  S  S  S  R  R  R  A  P  Q  M  I  S  T  P  T  L  L  E  K  T  F  R  S  V  Q  K  :  G  L :   V  G  F  K  K  W  R  V  L  *  S  H  *  I  T  N  W  K  L  K  L  K  D  F  M  V  I  Q  F  L  K  G  N  Q  *  I  L  V  I  K  F  E  Q  I  S  L  V  T  S  L  S  M  K  L  I  F  A  T  I  R  S  Y  I  D  Q  W :   V  S  E  Q  S  D  E  A  Q  L  V  W  M  E  K  W  I  T  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  *  R  N  R  H  Y  M  T  Q  G  Q  I  S  H  Y  C  L  I  K  L  V  K  V  V  K  C  S  *  L  E  I  C  *  E  V  S  *  *  N  S  I  C  T  A  S  S  Y  N  T  M  Y  S  V  C  I  L  L  F  Y  K  I  N  F  F  S  L  F  L  L  V  E  A  </second_frame>
            <third_frame>   K  E  K  R  E  K  P  F  P  P  L  Q  A  A  S  F  F  S  P  L  H  L  L  F  S  L  P  P  K  P  F  L  L  S  L  F  S  V  S  P  S  H  P  F  P  P  S  F  P  F  L  P  L  P  L  P  L  L  S  S  I  S  S  I  L  S  F  S  G  K  A  A  T  T  T  Q  Q  Q  L  R  Q  P  T  T  T  A  P  T  A  G  E  P  S  S  A  A  L  S  L  F  S  G  K  A  A  T  A  T  G  K  S  S  G  *  S  S  N  N  K  R  R  K  *  Q  R  H  H  S  H  T  Y  P  V  K  T  P  S  A  S  A  A  P  G  G  E  H  H  R  *  Y  Q  L  R  P  C  *  R  K  H  S  D  L  S  K  R :   A   : W  L  G  S  R  N  G  E  F  C  E  V  I  R  *  Q  I  G  S  *  N  *  R  I  L  W  *  F  N  S  *  K  E  I  S  E  S  W  L  S  S  S  N  K  F  L  *  *  P  A  Y  Q  *  N  *  F  L  L  Q  S  V  H  T  L  T  N   : G  Y  L  N  K  V  M  K  H  N  W  C  G  W  R  S  G  *  Q  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  I  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  E  E  I  G  I  T  *  H  K  G  K  L  V  I  T  V  *  S  S  W  L  K  L  L  S  V  V  S  *  K  F  V  R  K  L  V  S  K  T  V  Y  V  L  H  Q  V  T  I  Q  C  I  Q  F  V  F  F  F  F  T  K  *  T  S  S  L  F  S  F  L  L  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2654" stop="2160"/>
                    <exon start="1496" stop="1492"/>
                    <exon start="764" stop="734"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREEGETLPPSPSRLLLLPSPSPLLSSSQTLPPLPLFRQPLSPFPSLFPVSPPSSSSPLFYLLHSLFFRQSSDNNPAAAETAYNNSSNSRRAKQRRPLPLLRQSSDSNRQKLRLKQQQQTTEIAAPPLAYLSGEDTISVSSSRRRAPQMISTPTLLEKTFRSVQKGLVGFKKWRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="658" stop="567"/>
                    <exon start="485" stop="215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIKFEQISLVTSLSMKLIFATIRSYIDQWVSEQSDEAQLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11806" PGL_stop="10135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11806" e_stop="11482"/>
            <exon e_start="11388" e_stop="11194"/>
            <exon e_start="11118" e_stop="10996"/>
            <exon e_start="10921" e_stop="10719"/>
            <exon e_start="10637" e_stop="10135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.684" acc_prob="0.960" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="0.959"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.956"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11806" e_stop="11482" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11481" i_stop="11389" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="11388" e_stop="11194" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.684" acc_prob="0.960">
            <gDNA_intron_boundary i_start="11193" i_stop="11119" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="11118" e_stop="10996" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10995" i_stop="10922" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="10921" e_stop="10719" e_length="203"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10718" i_stop="10638" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10637" e_stop="10135" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11806" stop="11482"/>
              <exon start="11388" stop="11194"/>
              <exon start="11118" stop="10996"/>
              <exon start="10921" stop="10840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11805" stop="11482"/>
              <exon start="11388" stop="11212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11802" stop="11482"/>
              <exon start="11388" stop="11194"/>
              <exon start="11118" stop="10996"/>
              <exon start="10921" stop="10719"/>
              <exon start="10637" stop="10283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11801" stop="11482"/>
              <exon start="11388" stop="11196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11800" stop="11482"/>
              <exon start="11388" stop="11311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11799" stop="11482"/>
              <exon start="11388" stop="11194"/>
              <exon start="11118" stop="11025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11779" stop="11482"/>
              <exon start="11388" stop="11194"/>
              <exon start="11118" stop="10996"/>
              <exon start="10921" stop="10719"/>
              <exon start="10637" stop="10630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11778" stop="11482"/>
              <exon start="11388" stop="11208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="11482"/>
              <exon start="11388" stop="11194"/>
              <exon start="11118" stop="10996"/>
              <exon start="10921" stop="10895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11336" stop="11194"/>
              <exon start="11118" stop="10996"/>
              <exon start="10921" stop="10724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11040" stop="10996"/>
              <exon start="10921" stop="10719"/>
              <exon start="10637" stop="10338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10877" stop="10719"/>
              <exon start="10637" stop="10430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10783" stop="10719"/>
              <exon start="10637" stop="10135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266711" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATGTCTTATACACATAGAAGAAGTTGTATTTCTGGGCTCTTTCTCTTGTTGTTAGCTCTTTCTTGTGAAGCGAATTCGGGGTTTATAGGAGTTAAAGATTCTCATTTTGAACTCAATGGATCTCCTTTTCTATTCAATGGTTTCAACTCATATTGGTTGATGCATGTTGCTGCTGACCCTGCTGAAAGGTACAAAGTCACTGAGGTTCTTAAAGATGCTTCTACCGCTGGTCTTTCTGTTTGTCGTACTTGGGCTTTTAGTGATGGAGGTGATAGAGCATTACAAATATCACCTGGTGTTTATGATGAACGTGTTTTTCAG : GGTTTGGATTTTGTGATCGCGGAAGCTAAGAAATATGGTGTTCGTTTAATATTGAGCTTTGTAAATCAATGGAATGATTTTGGAGGAAAAGCTGAATATGTGTGGTGGGCGCGAAATGCAGGAGTTCAGATTAGTAATGACGATGAATTCTATACTCATCCTATACTCAAAAAATACTTGAAGAATCACATTGAG : AAAGTTGTTACAAGGTTGAATAGTATCACTAAAGTTGCTTACAAAGACGATGCAACAATTATGGCATGGGAACTCATGAATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT : GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAACACTTGTTGGAAGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAATTAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG : GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</gDNA_template>
            <first_frame> Q  N  V  L  Y  T  *  K  K  L  Y  F  W  A  L  S  L  V  V  S  S  F  L  *  S  E  F  G  V  Y  R  S  *  R  F  S  F  *  T  Q  W  I  S  F  S  I  Q  W  F  Q  L  I  L  V  D  A  C  C  C  *  P  C  *  K  V  Q  S  H  *  G  S  *  R  C  F  Y  R  W  S  F  C  L  S  Y  L  G  F  *  *  W  R  *  *  S  I  T  N  I  T  W  C  L  *  *  T  C  F  S   : G  F  G  F  C  D  R  G  S  *  E  I  W  C  S  F  N  I  E  L  C  K  S  M  E  *  F  W  R  K  S  *  I  C  V  V  G  A  K  C  R  S  S  D  *  *  *  R  *  I  L  Y  S  S  Y  T  Q  K  I  L  E  E  S  H  *   : E  S  C  Y  K  V  E  *  Y  H  *  S  C  L  Q  R  R  C  N  N  Y  G  M  G  T  H  E  *  A  S  R  S  S  *  L  F  R  K  N  C  *   : W  L  G  S  R  N  G  E  F  C  E  V  I  R  *  Q  T  L  V  G  S  W  N  G  G  I  L  W  *  F  N  S  *  K  E  I  S  *  S  W  L  S  S  W  N  R  F  H  *  *  P  S  Y  Q  *  N  *  F  C  Y  N  P  C  I  H  *  S  M  :  V  I  W  T  K  *  *  S  T  I  G  V  D  G  K  V  D  K  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  Q  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  F  Y  C  F  G  T  K  S  F  N  Y  T  N  Y  L  K  P  S  S  Y  H  D  C  F  G  S  F  S  Q  S  *  V  K  T  S  *  *  S  I  Y  N  L  S  F  L  V  L  L  I  *  D  D  I  T  K  H  V  Q  V  D  *  T  Q  E  C  N  *  I  N  C  F  S  K  K  E  S  Y  V   </first_frame>
            <second_frame>  K  M  S  Y  T  H  R  R  S  C  I  S  G  L  F  L  L  L  L  A  L  S  C  E  A  N  S  G  F  I  G  V  K  D  S  H  F  E  L  N  G  S  P  F  L  F  N  G  F  N  S  Y  W  L  M  H  V  A  A  D  P  A  E  R  Y  K  V  T  E  V  L  K  D  A  S  T  A  G  L  S  V  C  R  T  W  A  F  S  D  G  G  D  R  A  L  Q  I  S  P  G  V  Y  D  E  R  V  F  Q  :  G  L  D  F  V  I  A  E  A  K  K  Y  G  V  R  L  I  L  S  F  V  N  Q  W  N  D  F  G  G  K  A  E  Y  V  W  W  A  R  N  A  G  V  Q  I  S  N  D  D  E  F  Y  T  H  P  I  L  K  K  Y  L  K  N  H  I  E  :  K  V  V  T  R  L  N  S  I  T  K  V  A  Y  K  D  D  A  T  I  M  A  W  E  L  M  N  E  P  R  D  Q  A  D  Y  S  G  K  T  V  N  :  G  W  V  Q  E  M  A  S  F  V  K  S  L  D  N  K  H  L  L  E  V  G  M  E  G  F  Y  G  D  S  I  P  E  R  K  L  V  N  P  G  Y  Q  V  G  T  D  F  I  S  N  H  L  I  N  E  I  D  F  A  T  I  H  A  Y  T  D  Q  W :   L  S  G  Q  S  D  E  A  Q  L  A  W  M  E  K  W  I  R  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  S  I  V  L  G  L  N  P  S  T  T  Q  I  I  S  N  Q  A  H  I  M  T  A  L  A  H  S  L  N  H  E  *  R  H  H  N  N  Q  F  I  I  Y  H  F  *  Y  Y  *  F  E  M  I  L  P  N  M  F  K  L  I  K  H  K  N  V  I  E  *  I  V  L  V  K  R  K  V  M  L  </second_frame>
            <third_frame>   K  C  L  I  H  I  E  E  V  V  F  L  G  S  F  S  C  C  *  L  F  L  V  K  R  I  R  G  L  *  E  L  K  I  L  I  L  N  S  M  D  L  L  F  Y  S  M  V  S  T  H  I  G  *  C  M  L  L  L  T  L  L  K  G  T  K  S  L  R  F  L  K  M  L  L  P  L  V  F  L  F  V  V  L  G  L  L  V  M  E  V  I  E  H  Y  K  Y  H  L  V  F  M  M  N  V  F  F  R :   V  W  I  L  *  S  R  K  L  R  N  M  V  F  V  *  Y  *  A  L  *  I  N  G  M  I  L  E  E  K  L  N  M  C  G  G  R  E  M  Q  E  F  R  L  V  M  T  M  N  S  I  L  I  L  Y  S  K  N  T  *  R  I  T  L  R :   K  L  L  Q  G  *  I  V  S  L  K  L  L  T  K  T  M  Q  Q  L  W  H  G  N  S  *  M  S  L  A  I  K  L  T  I  Q  E  K  L  L  M :   V  G  F  K  K  W  R  V  L  *  S  H  *  I  T  N  T  C  W  K  L  E  W  R  D  F  M  V  I  Q  F  L  K  G  N  *  L  I  L  V  I  K  L  E  Q  I  S  L  V  T  I  L  S  M  K  L  I  L  L  Q  S  M  H  T  L  I  N   : G  Y  L  D  K  V  M  K  H  N  W  R  G  W  K  S  G  *  E  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  T  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  L  L  F  W  D  *  I  L  Q  L  H  K  L  S  Q  T  K  L  I  S  *  L  L  W  L  I  L  S  I  M  S  E  D  I  I  I  I  N  L  *  S  I  I  F  S  I  I  N  L  R  *  Y  Y  Q  T  C  S  S  *  L  N  T  R  M  *  L  N  K  L  F  *  *  K  G  K  L  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11805" stop="11482"/>
                    <exon start="11388" stop="11194"/>
                    <exon start="11118" stop="10996"/>
                    <exon start="10921" stop="10719"/>
                    <exon start="10637" stop="10274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSYTHRRSCISGLFLLLLALSCEANSGFIGVKDSHFELNGSPFLFNGFNSYWLMHVAADPAERYKVTEVLKDASTAGLSVCRTWAFSDGGDRALQISPGVYDERVFQGLDFVIAEAKKYGVRLILSFVNQWNDFGGKAEYVWWARNAGVQISNDDEFYTHPILKKYLKNHIEKVVTRLNSITKVAYKDDATIMAWELMNEPRDQADYSGKTVNGWVQEMASFVKSLDNKHLLEVGMEGFYGDSIPERKLVNPGYQVGTDFISNHLINEIDFATIHAYTDQWLSGQSDEAQLAWMEKWIRSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQAHIMTALAHSLNHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20042" PGL_stop="16562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20032" e_stop="19704"/>
            <exon e_start="19635" e_stop="19536"/>
            <exon e_start="18585" e_stop="18540"/>
            <exon e_start="18293" e_stop="18244"/>
            <exon e_start="18122" e_stop="18081"/>
            <exon e_start="17843" e_stop="17730"/>
            <exon e_start="17155" e_stop="17077"/>
            <exon e_start="16976" e_stop="16905"/>
            <exon e_start="16830" e_stop="16562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20032" e_stop="19704" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19703" i_stop="19636" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19635" e_stop="19536" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19535" i_stop="18586" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18585" e_stop="18540" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18539" i_stop="18294" i_length="246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18293" e_stop="18244" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18243" i_stop="18123" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18122" e_stop="18081" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18080" i_stop="17844" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17843" e_stop="17730" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17729" i_stop="17156" i_length="574"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17155" e_stop="17077" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17076" i_stop="16977" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16976" e_stop="16905" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16904" i_stop="16831" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16830" e_stop="16562" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20032" stop="19704"/>
              <exon start="19635" stop="19536"/>
              <exon start="18585" stop="18540"/>
              <exon start="18293" stop="18244"/>
              <exon start="18122" stop="18081"/>
              <exon start="17843" stop="17746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20031" stop="19704"/>
              <exon start="19635" stop="19536"/>
              <exon start="18585" stop="18540"/>
              <exon start="18293" stop="18244"/>
              <exon start="18122" stop="18081"/>
              <exon start="17843" stop="17815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18270" stop="18244"/>
              <exon start="18122" stop="18081"/>
              <exon start="17843" stop="17730"/>
              <exon start="17155" stop="17077"/>
              <exon start="16976" stop="16905"/>
              <exon start="16830" stop="16562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG : AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG : GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG : GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA : ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA : ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG : GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG : GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG : GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</gDNA_template>
            <first_frame> E  R  V  K  A  S  E  D  E  N  G  A  T  P  S  K  R  Q  H  K  S  K  S  K  R  E  D  E  S  E  S  E  P  E  R  E  V  R  K  H  R  R  K  R  S  R  S  S  R  R  R  S  R  D  D  Y  D  D  S  D  S  S  S  S  G  E  D  S  Y  S  D  S  E  D  S  Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R :   E  E  R  E  E  E  E  K  E  R  E  G  E  N  W  C  C  Y  K  L  L  G  K  I  W  N  H  Q  G  N  *  Y  V  :  E  Q  T  A  R  V  Y  R  M  V  G  R  N  K  E   : G  E  S  G  K  P  A  K  L  G  R  E  A  I  V  Q  A  :  I  H  G  G  S  *  H  C  N  L  P  F  *  K  :  I  L  *  P  *  R  L  L  Q  T  *  N  G  K  G  K  *  K  R  C  Q  E  G  R  G  R  *  T  Y  C  L  R  *  *  R  T  A  Q  :  A  R  T  D  A  R  A  *  E  A  Q  A  R  T  G  G  N  I  E  A  R  D  A  E  W  N   : G  A  S  N  E  R  T  S  S  I  K  R  R  D  G  L  S  I  Q  A  W  *  L  *   : G  C  S  C  Y  S  K  T  F  G  P  *  S  P  Y  V  D  E  V  L  Q  N  F  G  L  R  Y  N  G  L  H  *  T  T  C  F  S  F  S  V  S  F  S  L  S  K  Y  A  C  R  F  I  C  K  S  K  L  I  T  R  Y  H  *  A  R  *  V  E  I  *  F  M  Y  C  C  V  I  S  F  A  L  P  S  F  Y  S  L  R  S  P </first_frame>
            <second_frame>  S  E  *  K  L  Q  K  T  K  M  E  R  L  H  R  S  G  N  T  N  Q  N  P  K  E  K  M  N  L  N  P  N  R  N  E  K  *  E  N  T  A  E  R  E  V  E  V  L  E  E  D  R  G  M  I  M  T  I  R  I  L  H  H  L  E  K  I  R  I  R  T  L  K  T  R  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R   : E  K  K  E  R  K  K  K  K  K  E  K  G  K  T  G  A  V  T  N  S  W  G  K  Y  G  I  I  K  E  T  D  M  W :   N  K  R  P  E  F  T  A  W  L  A  E  I  K  K  :  V  N  L  E  S  L  P  N  W  E  E  K  Q  L  F  K  Q :   F  M  E  D  H  N  T  A  T  F  P  S  K  K :   Y  Y  N  L  D  A  Y  Y  R  R  K  M  E  K  E  S  R  R  G  V  K  K  V  V  D  D  E  R  T  V  F  D  D  E  E  Q  R  R :   Q  E  L  M  R  E  R  E  K  H  K  Q  E  Q  V  E  T  L  K  R  E  M  Q  S  G  M  :  A  Q  A  M  K  E  Q  A  Q  L  R  E  E  M  A  Y  Q  Y  K  L  G  N  F  E  :  A  A  A  A  I  Q  R  R  L  D  P  D  L  P  M  *  T  R  F  C  K  I  L  V  Y  A  T  T  D  Y  I  R  L  H  V  L  V  F  L  S  P  F  R  *  V  N  M  L  A  D  S  S  A  S  L  S  L  L  L  D  I  T  R  L  D  E  L  K  S  S  S  C  I  V  V  *  Y  H  L  H  S  H  L  F  I  L  F  D  L   </second_frame>
            <third_frame>   A  S  K  S  F  R  R  R  K  W  S  D  S  I  E  A  A  T  Q  I  K  I  Q  K  R  R  *  I  *  I  R  T  G  T  R  S  E  K  T  P  Q  K  E  K  S  K  F  *  K  K  I  A  G  *  L  *  R  F  G  F  F  I  I  W  R  R  F  V  F  G  L  *  R  L  V  F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  :  R  R  K  R  G  R  R  K  R  K  R  R  G  K  L  V  L  L  Q  T  L  G  E  N  M  E  S  S  R  K  L  I  C   : G  T  N  G  Q  S  L  P  H  G  W  Q  K  *  R  R :   *  I  W  K  A  C  Q  I  G  K  R  S  N  C  S  S   : N  S  W  R  I  I  T  L  Q  P  S  L  L  K   : N  I  I  T  L  T  P  I  T  D  V  K  W  K  R  K  V  E  E  V  S  R  R  S  W  T  M  N  V  L  S  S  M  M  K  N  S  A   : G  K  N  *  C  E  S  V  R  S  T  S  K  N  R  W  K  H  *  S  A  R  C  R  V  E  W :   R  K  Q  *  K  N  K  L  N  *  E  K  R  W  L  I  N  T  S  L  V  T  L  R :   L  Q  L  L  F  K  D  V  W  T  L  I  S  L  C  R  R  G  S  A  K  F  W  S  T  L  Q  R  I  T  L  D  Y  M  F  *  F  F  C  L  L  F  V  E  *  I  C  L  Q  I  H  L  Q  V  *  A  Y  Y  *  I  S  L  G  *  M  S  *  N  L  V  H  V  L  L  C  N  I  I  C  T  P  I  F  L  F  S  S  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19920" stop="19704"/>
                    <exon start="19635" stop="19536"/>
                    <exon start="18585" stop="18540"/>
                    <exon start="18293" stop="18244"/>
                    <exon start="18122" stop="18081"/>
                    <exon start="17843" stop="17730"/>
                    <exon start="17155" stop="17077"/>
                    <exon start="16976" stop="16905"/>
                    <exon start="16830" stop="16783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTAEREVEVLEEDRGMIMTIRILHHLEKIRIRTLKTRIRIQSRVVVRSIRIRKRRGGVERGEIGREERKRREKKERKKKKKEKGKTGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLPNWEEKQLFKQFMEDHNTATFPSKKYYNLDAYYRRKMEKESRRGVKKVVDDERTVFDDEEQRRQELMREREKHKQEQVETLKREMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20042" e_stop="19696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="20042" e_stop="19696" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20042" stop="19696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20034" stop="19697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGA</gDNA_template>
            <first_frame> N  G  E  R  A  S  K  S  F  R  R  R  K  W  S  D  S  I  E  A  A  T  Q  I  K  I  Q  K  R  R  *  I  *  I  R  T  G  T  R  S  E  K  T  P  Q  K  E  K  S  K  F  *  K  K  I  A  G  *  L  *  R  F  G  F  F  I  I  W  R  R  F  V  F  G  L  *  R  L  V  F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  R  E   </first_frame>
            <second_frame>  M  A  K  E  R  V  K  A  S  E  D  E  N  G  A  T  P  S  K  R  Q  H  K  S  K  S  K  R  E  D  E  S  E  S  E  P  E  R  E  V  R  K  H  R  R  K  R  S  R  S  S  R  R  R  S  R  D  D  Y  D  D  S  D  S  S  S  S  G  E  D  S  Y  S  D  S  E  D  S  Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R  E  K  </second_frame>
            <third_frame>   W  R  K  S  E  *  K  L  Q  K  T  K  M  E  R  L  H  R  S  G  N  T  N  Q  N  P  K  E  K  M  N  L  N  P  N  R  N  E  K  *  E  N  T  A  E  R  E  V  E  V  L  E  E  D  R  G  M  I  M  T  I  R  I  L  H  H  L  E  K  I  R  I  R  T  L  K  T  R  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R  E  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20041" stop="19697"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAKERVKASEDENGATPSKRQHKSKSKREDESESEPEREVRKHRRKRSRSSRRRSRDDYDDSDSSSSGEDSYSDSEDSYSDSESGSSSEYSDSEEERRRRKRRDRKRREEKEREK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22691" PGL_stop="22060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22691" e_stop="22060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="22691" e_stop="22060" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22691" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCATCATTAGAGTCTGAACCCAAGAAGGATCAGGCAGATGTAGACATACCTCATAGGCCTCGAGCTATTAGGACGATGACACCGCATAATTCAGACTCTCCAATCTCTCGCTTACATCAGAGACTTCGTCAAACTTCTGTCTACCCTCCACGACCCTCCACATTTCAACATCACCGGCAATATCTCCCCCAAGCCTTTGGTAACTACGCAGCTTTGGCTCCATCTAGCTTTGGGAGCACAGCAATGACCAGTTTGTTCAGCCCAGTGGTTGGTGTGTTTGGAGAACTGTTTTCTTCAAGACTGTTTGGAATCGCTTATCCTCATCCTAGATCTTATCTCATCCGAGGACGCAGTGGTCTTAGAATGAGAAGGGAAGAAATGCAGATGGACAAATTTCTCAACAGATTGTTCATCTTTCTTTTCTGCTGCTCTATCTTGTGCCTACTCCTGTTTTGAGGTTCATATAATGTTTATCTTCATCATATATTTGTATAAATATGTGGTTGTGCTTACAACAATCAGGTAATAGTTCATAGTAGACAAATATAGACTAGTAAGAGATTTAGTAGAAATATAGCTTTATACACCATGCTAATGTTGCTTCATTTCCTTATCCTTGTGCCTCTTTT</gDNA_template>
            <first_frame> I  S  S  L  E  S  E  P  K  K  D  Q  A  D  V  D  I  P  H  R  P  R  A  I  R  T  M  T  P  H  N  S  D  S  P  I  S  R  L  H  Q  R  L  R  Q  T  S  V  Y  P  P  R  P  S  T  F  Q  H  H  R  Q  Y  L  P  Q  A  F  G  N  Y  A  A  L  A  P  S  S  F  G  S  T  A  M  T  S  L  F  S  P  V  V  G  V  F  G  E  L  F  S  S  R  L  F  G  I  A  Y  P  H  P  R  S  Y  L  I  R  G  R  S  G  L  R  M  R  R  E  E  M  Q  M  D  K  F  L  N  R  L  F  I  F  L  F  C  C  S  I  L  C  L  L  L  F  *  G  S  Y  N  V  Y  L  H  H  I  F  V  *  I  C  G  C  A  Y  N  N  Q  V  I  V  H  S  R  Q  I  *  T  S  K  R  F  S  R  N  I  A  L  Y  T  M  L  M  L  L  H  F  L  I  L  V  P  L   </first_frame>
            <second_frame>  Y  H  H  *  S  L  N  P  R  R  I  R  Q  M  *  T  Y  L  I  G  L  E  L  L  G  R  *  H  R  I  I  Q  T  L  Q  S  L  A  Y  I  R  D  F  V  K  L  L  S  T  L  H  D  P  P  H  F  N  I  T  G  N  I  S  P  K  P  L  V  T  T  Q  L  W  L  H  L  A  L  G  A  Q  Q  *  P  V  C  S  A  Q  W  L  V  C  L  E  N  C  F  L  Q  D  C  L  E  S  L  I  L  I  L  D  L  I  S  S  E  D  A  V  V  L  E  *  E  G  K  K  C  R  W  T  N  F  S  T  D  C  S  S  F  F  S  A  A  L  S  C  A  Y  S  C  F  E  V  H  I  M  F  I  F  I  I  Y  L  Y  K  Y  V  V  V  L  T  T  I  R  *  *  F  I  V  D  K  Y  R  L  V  R  D  L  V  E  I  *  L  Y  T  P  C  *  C  C  F  I  S  L  S  L  C  L  F  </second_frame>
            <third_frame>   I  I  I  R  V  *  T  Q  E  G  S  G  R  C  R  H  T  S  *  A  S  S  Y  *  D  D  D  T  A  *  F  R  L  S  N  L  S  L  T  S  E  T  S  S  N  F  C  L  P  S  T  T  L  H  I  S  T  S  P  A  I  S  P  P  S  L  W  *  L  R  S  F  G  S  I  *  L  W  E  H  S  N  D  Q  F  V  Q  P  S  G  W  C  V  W  R  T  V  F  F  K  T  V  W  N  R  L  S  S  S  *  I  L  S  H  P  R  T  Q  W  S  *  N  E  K  G  R  N  A  D  G  Q  I  S  Q  Q  I  V  H  L  S  F  L  L  L  Y  L  V  P  T  P  V  L  R  F  I  *  C  L  S  S  S  Y  I  C  I  N  M  W  L  C  L  Q  Q  S  G  N  S  S  *  *  T  N  I  D  *  *  E  I  *  *  K  Y  S  F  I  H  H  A  N  V  A  S  F  P  Y  P  C  A  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22691" stop="22233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSLESEPKKDQADVDIPHRPRAIRTMTPHNSDSPISRLHQRLRQTSVYPPRPSTFQHHRQYLPQAFGNYAALAPSSFGSTAMTSLFSPVVGVFGELFSSRLFGIAYPHPRSYLIRGRSGLRMRREEMQMDKFLNRLFIFLFCCSILCLLLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23540" PGL_stop="22809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23540" e_stop="22809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23540" e_stop="22809" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23540" stop="22809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23540" stop="23115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</gDNA_template>
            <first_frame> W  K  K  M  I  W  R  I  *  L  G  I  H  V  N  Y  F  I  Q  T  S  S  P  N  P  W  I  L  M  D  V  *  V  F  *  P  N  *  *  S  R  F  I  Y  S  I  L  E  S  N  H  K  L  F  L  F  F  I  T  *  T  T  I  F  F  Q  Q  M  V  S  R  *  A  R  L  K  L  V  K  *  N  F  V  G  H  C  F  S  A  *  L  K  R  C  L  N  *  H  D  F  V  S  N  P  Y  *  L  L  S  Y  S  H  S  H  L  I  L  K  Q  K  E  G  E  N  N  E  P  L  F  *  L  I  R  E  D  Q  T  N  Y  H  S  S  K  V  C  *  S  H  L  C  I  S  R  S  L  L  A  H  T  H  M  F  D  F  Y  S  A  F  C  D  C  E  V  R  D  Y  L  *  I  S  S  L  I  D  F  M  T  I  T  R  V  G  S  D  E  D  I  S  V  D  K  K  N  S  V  P  F  P  T  S  A  S  D  N  E  S  S  C  F  D  C  N  I  C  L  D  S  A  H  D  P  V  V  T  L  C  G  H  L  Y  C  W  P  C </first_frame>
            <second_frame>  G  K  K  *  Y  G  E  Y  D  W  E  Y  M  S  I  I  L  Y  K  Q  V  L  Q  I  H  G  S  *  W  M  F  E  C  F  N  P  I  N  N  P  G  L  Y  I  Q  F  W  K  A  I  I  N  Y  F  S  F  S  *  L  E  L  L  Y  F  F  N  K  W  F  R  D  R  P  D  S  S  *  *  N  E  T  L  *  G  I  V  L  V  L  D  *  R  G  V  *  I  D  M  I  L  Y  P  I  H  T  N  C  F  H  T  L  T  P  I  *  F  L  N  R  K  K  E  K  T  M  S  R  F  S  D  *  S  A  K  T  K  L  I  I  T  H  Q  K  F  V  S  P  I  C  A  F  H  V  V  C  L  L  I  H  I  C  L  I  S  I  V  H  F  V  I  V  R  S  V  I  I  C  E  F  H  L  *  *  I  S  *  L  S  P  A  L  G  L  M  K  I  F  P  L  I  R  K  T  Q  F  H  F  Q  H  Q  P  L  I  M  N  L  P  V  L  I  A  T  F  A  L  T  Q  H  M  I  L  *  S  P  S  A  V  T  S  T  A  G  L   </second_frame>
            <third_frame>   E  K  N  D  M  E  N  M  T  G  N  T  C  Q  L  F  Y  T  N  K  F  S  K  S  M  D  P  N  G  C  L  S  V  L  T  Q  L  I  I  Q  V  Y  I  F  N  F  G  K  Q  S  *  I  I  S  L  F  H  N  L  N  Y  Y  I  F  S  T  N  G  F  E  I  G  Q  T  Q  A  S  K  M  K  L  C  R  A  L  F  *  C  L  I  K  E  V  F  K  L  T  *  F  C  I  Q  S  I  L  I  A  F  I  L  S  L  P  F  D  S  *  T  E  R  R  R  K  Q  *  A  A  F  L  I  N  P  R  R  P  N  *  L  S  L  I  K  S  L  L  V  P  F  V  H  F  T  *  F  A  C  S  Y  T  Y  V  *  F  L  *  C  I  L  *  L  *  G  P  *  L  F  V  N  F  I  F  N  R  F  H  D  Y  H  P  R  W  V  *  *  R  Y  F  R  *  *  E  K  L  S  S  I  S  N  I  S  L  *  *  *  I  F  L  F  *  L  Q  H  L  P  *  L  S  T  *  S  C  S  H  P  L  R  S  P  L  L  L  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23006" stop="22809"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSLIDFMTITRVGSDEDISVDKKNSVPFPTSASDNESSCFDCNICLDSAHDPVVTLCGHLYCWPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28329" PGL_stop="25847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28329" e_stop="28048"/>
            <exon e_start="26361" e_stop="25847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28329" e_stop="28048" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="28047" i_stop="26362" i_length="1686"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="26361" e_stop="25847" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28329" stop="28048"/>
              <exon start="26361" stop="25924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28312" stop="28048"/>
              <exon start="26361" stop="26337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28311" stop="28048"/>
              <exon start="26361" stop="26082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28311" stop="28048"/>
              <exon start="26361" stop="26224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28307" stop="28048"/>
              <exon start="26361" stop="25925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28307" stop="28048"/>
              <exon start="26361" stop="25946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28295" stop="28048"/>
              <exon start="26361" stop="25918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28294" stop="28048"/>
              <exon start="26361" stop="25917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28281" stop="28048"/>
              <exon start="26361" stop="26329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28263" stop="28048"/>
              <exon start="26361" stop="26082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28217" stop="28048"/>
              <exon start="26361" stop="26329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28214" stop="28048"/>
              <exon start="26361" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28205" stop="28048"/>
              <exon start="26361" stop="26024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28181" stop="28048"/>
              <exon start="26361" stop="25923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26328" stop="25847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26310" stop="25954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26286" stop="25868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCAAAAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG : TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCATTTCACCAT</gDNA_template>
            <first_frame> L  S  K  K  P  N  Q  I  L  L  S  H  T  N  L  S  T  L  L  W  L  V  C  W  K  L  S  Q  F  L  G  P  P  P  P  L  L  R  R  R  C  L  L  F  P  V  A  G  L  L  L  N  S  L  Y  S  M  V  L  R  S  S  R  L  V  H  Q  Y  P  L  A  H  L  Q  N  L  F  P  V  E  E  E  E  S  S  V  R  L  R  I  L  L  F  *  :  C  L  V  L  M  I  N  H  G  R  L  L  *  S  G  L  S  Y  L  F  W  L  N  F  G  L  H  G  V  V  H  A  E  *  F  T  R  L  L  M  N  Y  H  R  N  L  L  T  S  L  N  S  S  R  *  T  R  M  K  V  L  A  S  R  P  D  M  G  F  E  V  S  Q  P  S  *  F  S  R  M  E  R  R  K  I  Q  S  L  V  Q  S  L  K  Q  R  *  Q  P  A  *  K  N  S  C  K  M  V  H  M  *  S  S  F  I  F  P  F  F  C  L  L  H  C  K  N  Y  N  L  I  N  L  R  F  V  C  I  V  V  L  Y  A  M  F  L  L  C  H  Y  V  C  F  N  V  S  E  V  Q  I  S  L  V  K  L  S  L  Y  W  L  H  F  T   </first_frame>
            <second_frame>  S  Q  K  S  P  I  K  F  Y  S  A  T  Q  I  Y  Q  P  C  Y  G  W  F  A  G  N  Y  R  S  S  S  G  R  R  R  R  C  F  A  V  V  V  S  C  F  R  S  P  V  F  C  *  I  L  S  I  Q  W  S  *  D  P  V  D  S  F  I  S  I  L  *  L  I  Y  K  I  C  S  Q  *  R  R  K  N  R  L  *  G  S  G  Y  C  C  S  S :   A  W  C  *  *  S  I  M  G  D  S  C  N  R  V  *  V  T  C  S  G  *  I  L  G  S  M  V  W  S  M  Q  N  D  S  P  G  Y  *  *  T  I  T  G  I  C  *  Q  V  *  I  L  Q  G  E  H  G  *  K  S  W  H  R  D  Q  I  W  D  S  K  Y  P  N  R  H  D  F  Q  G  W  R  E  E  R  Y  S  H  W  C  S  P  *  N  N  V  D  S  L  H  R  K  I  L  V  K  W  Y  I  C  R  A  L  L  Y  F  P  S  F  A  F  C  T  A  R  T  I  T  *  *  I  *  D  S  S  V  *  L  C  Y  M  L  C  F  F  F  V  I  M  F  A  S  M  F  L  K  F  K  F  H  W  *  N  C  L  Y  I  G  F  I  S  P  </second_frame>
            <third_frame>   L  K  K  A  Q  S  N  S  T  Q  P  H  K  F  I  N  P  A  M  A  G  L  L  E  T  I  A  V  P  R  A  A  A  A  A  A  S  P  S  L  S  P  V  S  G  R  R  S  S  V  K  F  S  L  F  N  G  L  K  I  Q  S  T  R  S  S  V  S  F  S  S  F  T  K  S  V  P  S  R  G  G  R  I  V  C  E  A  Q  D  T  A  V  L   : V  P  G  V  N  D  Q  S  W  E  T  L  V  I  G  S  K  L  P  V  L  V  E  F  W  A  P  W  C  G  P  C  R  M  I  H  P  V  I  D  E  L  S  Q  E  F  A  D  K  F  K  F  F  K  V  N  T  D  E  S  P  G  I  A  T  R  Y  G  I  R  S  I  P  T  V  M  I  F  K  D  G  E  K  K  D  T  V  I  G  A  V  P  K  T  T  L  T  A  C  I  E  K  F  L  *  N  G  T  Y  V  E  L  F  Y  I  S  L  L  L  P  F  A  L  Q  E  L  *  L  D  K  S  E  I  R  L  Y  S  C  V  I  C  Y  V  S  S  L  S  L  C  L  L  Q  C  F  *  S  S  N  F  T  G  K  I  V  S  I  L  A  S  F  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28327" stop="28048"/>
                    <exon start="26361" stop="26048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKAQSNSTQPHKFINPAMAGLLETIAVPRAAAAAASPSLSPVSGRRSSVKFSLFNGLKIQSTRSSVSFSSFTKSVPSRGGRIVCEAQDTAVLVPGVNDQSWETLVIGSKLPVLVEFWAPWCGPCRMIHPVIDELSQEFADKFKFFKVNTDESPGIATRYGIRSIPTVMIFKDGEKKDTVIGAVPKTTLTACIEKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32609" PGL_stop="31713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32609" e_stop="32444"/>
            <exon e_start="32076" e_stop="31713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32609" e_stop="32444" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.979">
            <gDNA_intron_boundary i_start="32443" i_stop="32077" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32076" e_stop="31713" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32609" stop="32444"/>
              <exon start="32076" stop="31713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG : CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</gDNA_template>
            <first_frame> F  H  T  R  A  N  I  E  R  *  A  L  F  Q  *  A  W  I  C  Q  D  E  W  L  S  L  R  G  T  K  L  T  A  L  *  R  E  H  L  H  F  *  S  Q  D  N  G  L  L  Y  E  A  T  T  T   : A  L  *  G  F  C  H  R  A  L  L  S  K  L  S  R  Y  S  C  G  M  *  S  I  Y  G  R  C  S  C  G  *  P  C  Q  R  V  C  S  R  R  W  W  Q  G  W  *  Q  R  W  F  S  E  F  Q  G  H  V  G  G  I  H  R  G  T  C  R  G  V  Q  K  D  W  L  R  G  L  *  *  V  S  S  L  G  R  K  S  V  N  Q  S  N  S  S  *  D  R  L  I  E  T  A  D  H  M  *  I  S  V  L  L  Y  T  *  C  *  Q  T  S  F  Q   </first_frame>
            <second_frame>  S  I  Q  G  L  I  L  N  A  K  P  Y  F  N  E  P  G  Y  A  R  M  N  G  S  A  S  G  E  R  N  S  L  R  Y  N  E  N  T  C  I  F  N  L  K  T  M  V  Y  C  M  R  R  P  P  Q  :  H  F  E  D  F  V  I  G  H  Y  F  Q  S  C  Q  D  I  L  V  A  C  K  A  Y  M  E  G  A  R  V  G  S  L  V  R  G  C  V  L  G  D  G  G  K  G  G  D  K  G  G  S  R  S  F  K  A  M  L  A  G  F  I  G  V  L  V  E  A  F  K  K  I  G  C  E  D  C  D  K  F  L  P  L  A  E  K  A  S  T  R  A  T  P  V  K  I  D  *  *  R  L  L  T  I  C  R  F  Q  Y  C  Y  T  P  N  V  D  K  L  V  F  R  </second_frame>
            <third_frame>   P  Y  K  G  *  Y  *  T  L  S  P  I  S  M  S  L  D  M  P  G  *  M  A  Q  P  Q  G  N  E  T  H  C  A  I  T  R  T  L  A  F  L  I  S  R  Q  W  S  I  V  *  G  D  H  H  S :   T  L  R  I  L  S  *  G  I  T  F  K  A  V  K  I  F  L  W  H  V  K  H  I  W  K  V  L  V  W  V  A  L  S  E  G  V  F  S  A  M  V  A  R  V  V  T  K  V  V  L  G  V  S  R  P  C  W  R  D  S  S  G  Y  L  *  R  R  S  K  R  L  V  A  R  I  V  I  S  F  F  P  W  Q  K  K  R  Q  P  E  Q  L  Q  L  R  *  T  D  R  D  C  *  P  Y  V  D  F  S  T  V  I  H  L  M  L  T  N  *  F  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32608" stop="32444"/>
                    <exon start="32076" stop="31783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIQGLILNAKPYFNEPGYARMNGSASGERNSLRYNENTCIFNLKTMVYCMRRPPQHFEDFVIGHYFQSCQDILVACKAYMEGARVGSLVRGCVLGDGGKGGDKGGSRSFKAMLAGFIGVLVEAFKKIGCEDCDKFLPLAEKASTRATPVKID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="33744" PGL_stop="32956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33744" e_stop="33389"/>
            <exon e_start="33309" e_stop="33246"/>
            <exon e_start="33039" e_stop="32956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33744" e_stop="33389" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33388" i_stop="33310" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33309" e_stop="33246" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33245" i_stop="33040" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33039" e_stop="32956" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33744" stop="33389"/>
              <exon start="33309" stop="33246"/>
              <exon start="33039" stop="32956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG : GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG : ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</gDNA_template>
            <first_frame> Q  G  L  C  L  Q  Q  V  I  *  S  L  F  H  *  N  R  F  I  Q  G  I  L  S  H  Q  I  L  *  T  I  F  F  Q  N  C  F  L  R  G  L  F  L  H  Q  V  L  C  T  I  S  I  R  K  W  I  M  N  S  G  L  M  V  R  I  T  V  Q  V  Y  H  S  N  A  N  Q  L  L  V  R  N  N  M  E  I  *  V  K  A  *  R  I  S  V  F  S  R  N  L  I  L  F  K  I  I  Q  A  I  T  F  L  D  L  H  L  M  T  T  W :   P  L  R  V  V  P  R  G  Y  W  R  S  G  R  Y  W  R  K  I  Y  L  :  I  P  Y  L  S  E  C  M  K  Q  G  W  I  C  *  E  Q  *  L  L  E  L  M  E  L  L  T  M </first_frame>
            <second_frame>  R  V  Y  A  C  N  R  *  Y  D  L  S  S  T  R  T  G  S  S  R  V  Y  Y  P  T  R  Y  Y  E  L  F  S  S  R  T  A  F  Y  G  A  C  S  C  T  R  C  Y  A  L  F  P  S  G  N  G  S  *  T  L  D  S  W  S  A  *  Q  C  K  S  I  T  P  M  R  I  S  S  *  *  G  T  T  W  K  F  R  *  K  P  E  E  F  P  S  F  Q  E  I  *  Y  C  S  R  S  F  R  P  L  L  F  W  T  C  I  S  *  Q  P   : G  L  *  E  L  C  Q  E  D  T  G  G  V  E  D  T  G  E  R  F  T  * :   Y  H  I  C  P  S  V  *  N  K  D  G  S  V  E  S  S  D  Y  W  S  *  W  N  S  L  P   </second_frame>
            <third_frame>   G  F  M  L  A  T  G  D  M  I  S  L  P  L  E  Q  V  H  P  G  Y  I  I  P  P  D  T  M  N  Y  F  L  P  E  L  L  S  T  G  P  V  L  A  P  G  A  M  H  Y  F  H  Q  E  M  D  H  E  L  W  T  H  G  P  H  N  S  A  S  L  S  L  Q  C  E  S  A  P  S  K  E  Q  H  G  N  L  G  E  S  L  K  N  F  R  L  F  K  K  F  D  T  V  Q  D  H  S  G  H  Y  F  S  G  L  A  S  H  D  N  L  :  A  S  K  S  C  A  K  R  I  L  E  E  W  K  I  L  E  K  D  L  P   : D  T  I  F  V  R  V  Y  E  T  R  M  D  L  L  R  A  V  I  I  G  A  D  G  T  P  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33742" stop="33389"/>
                    <exon start="33309" stop="33246"/>
                    <exon start="33039" stop="32957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFMLATGDMISLPLEQVHPGYIIPPDTMNYFLPELLSTGPVLAPGAMHYFHQEMDHELWTHGPHNSASLSLQCESAPSKEQHGNLGESLKNFRLFKKFDTVQDHSGHYFSGLASHDNLASKSCAKRILEEWKILEKDLPDTIFVRVYETRMDLLRAVIIGADGTPYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="43995" PGL_stop="43569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43995" e_stop="43569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="43995" e_stop="43569" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43995" stop="43672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43995" stop="43689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43995" stop="43843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43994" stop="43569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGACACGTCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  V  D  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  K  Y  I  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  H  N  L  Y  T  Y  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  T  R  L  T  N  F  S  *  R  L  L  W  S  T  I  K  S  N  P  S  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  N  I  F  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  I  I  Y  T  L  M  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  H  V  *  Q  T  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  Y  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  *  F  I  H  L  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  D  T  S  D  K  L  *  L  T  F  A  M  E  H  N  *  I  K  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43806" stop="43606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRKYIFCMCIYNFLSLYTKQKHNLYTYVYKAREASENGEWRARFLGETRLTNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48968" PGL_stop="50287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48968" e_stop="49079"/>
            <exon e_start="49736" e_stop="50287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48968" e_stop="49079" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49080" i_stop="49735" i_length="656"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="49736" e_stop="50287" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48968" stop="49079"/>
              <exon start="49736" stop="50287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGCTCTCCTACATAACCAAAAACTCTATTTCATCCCCCTTCACTTCAATCTCCTAAAAAATGTCGGACAAGCGTGGTAGTTACAATTATGCTGACATTAACAAATGTGT : GAAGAAGGAAAACCAATATGATATGGCCTTCATCGACAAGAGGTAATTTGGCGATTTTTAGTAATATTTTATGTATCTTTTTAAAAAAATACTTGCGAATTAACACCCAAAATATTAATTGATTTTTGATACTCGTATTTCAATCATGCAAAATAGTATTTTTTTTTTCATTAAAATTTTCCACTAGAAAAAATAGTTATATGAGAATATTTTTCATCGTCTGCTTTCCTAAAAATCTCGAAAATGAATGAAAAAAATCATATCTTATAGAATAATTGTTCATTCATTCTTGGTGAAAAAAACTTTATGCCTAGTAGATTAAAACAAAGGCAGAGCAAAATAGATTACTAATTCCCATTAAAAATTTTGGTGCATGTGTTGTCTTTTTGTCTTTCTTGCTATAATTAGAGTCGTCAATATGGGTTAGGTCTGTTGGATCGGTCTGACCTAATTCTGTATTGCATAGGGCTGAGCTACGATTTTTGGAACCCATTTTAGAAAAGAATTTTTTAGTTCGTCCTGAATAAACCTGCTGATTTGGGAGCTTGAGAA</gDNA_template>
            <first_frame> T  C  S  P  T  *  P  K  T  L  F  H  P  P  S  L  Q  S  P  K  K  C  R  T  S  V  V  V  T  I  M  L  T  L  T  N  V   : *  R  R  K  T  N  M  I  W  P  S  S  T  R  G  N  L  A  I  F  S  N  I  L  C  I  F  L  K  K  Y  L  R  I  N  T  Q  N  I  N  *  F  L  I  L  V  F  Q  S  C  K  I  V  F  F  F  S  L  K  F  S  T  R  K  N  S  Y  M  R  I  F  F  I  V  C  F  P  K  N  L  E  N  E  *  K  K  S  Y  L  I  E  *  L  F  I  H  S  W  *  K  K  L  Y  A  *  *  I  K  T  K  A  E  Q  N  R  L  L  I  P  I  K  N  F  G  A  C  V  V  F  L  S  F  L  L  *  L  E  S  S  I  W  V  R  S  V  G  S  V  *  P  N  S  V  L  H  R  A  E  L  R  F  L  E  P  I  L  E  K  N  F  L  V  R  P  E  *  T  C  *  F  G  S  L  R  </first_frame>
            <second_frame>  L  A  L  L  H  N  Q  K  L  Y  F  I  P  L  H  F  N  L  L  K  N  V  G  Q  A  W  *  L  Q  L  C  *  H  *  Q  M  C  :  E  E  G  K  P  I  *  Y  G  L  H  R  Q  E  V  I  W  R  F  L  V  I  F  Y  V  S  F  *  K  N  T  C  E  L  T  P  K  I  L  I  D  F  *  Y  S  Y  F  N  H  A  K  *  Y  F  F  F  H  *  N  F  P  L  E  K  I  V  I  *  E  Y  F  S  S  S  A  F  L  K  I  S  K  M  N  E  K  N  H  I  L  *  N  N  C  S  F  I  L  G  E  K  N  F  M  P  S  R  L  K  Q  R  Q  S  K  I  D  Y  *  F  P  L  K  I  L  V  H  V  L  S  F  C  L  S  C  Y  N  *  S  R  Q  Y  G  L  G  L  L  D  R  S  D  L  I  L  Y  C  I  G  L  S  Y  D  F  W  N  P  F  *  K  R  I  F  *  F  V  L  N  K  P  A  D  L  G  A  *  E </second_frame>
            <third_frame>   L  L  S  Y  I  T  K  N  S  I  S  S  P  F  T  S  I  S  *  K  M  S  D  K  R  G  S  Y  N  Y  A  D  I  N  K  C  V :   K  K  E  N  Q  Y  D  M  A  F  I  D  K  R  *  F  G  D  F  *  *  Y  F  M  Y  L  F  K  K  I  L  A  N  *  H  P  K  Y  *  L  I  F  D  T  R  I  S  I  M  Q  N  S  I  F  F  F  I  K  I  F  H  *  K  K  *  L  Y  E  N  I  F  H  R  L  L  S  *  K  S  R  K  *  M  K  K  I  I  S  Y  R  I  I  V  H  S  F  L  V  K  K  T  L  C  L  V  D  *  N  K  G  R  A  K  *  I  T  N  S  H  *  K  F  W  C  M  C  C  L  F  V  F  L  A  I  I  R  V  V  N  M  G  *  V  C  W  I  G  L  T  *  F  C  I  A  *  G  *  A  T  I  F  G  T  H  F  R  K  E  F  F  S  S  S  *  I  N  L  L  I  W  E  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0029N13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="58510" PGL_stop="60194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58510" e_stop="58987"/>
            <exon e_start="59100" e_stop="59257"/>
            <exon e_start="60015" e_stop="60194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.940" e_score="0.987"/>
          <exon-intron don_prob="0.928" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="58510" e_stop="58987" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.940">
            <gDNA_intron_boundary i_start="58988" i_stop="59099" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59100" e_stop="59257" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.889">
            <gDNA_intron_boundary i_start="59258" i_stop="60014" i_length="757"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="60015" e_stop="60194" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58510" stop="58987"/>
              <exon start="59100" stop="59257"/>
              <exon start="60015" stop="60194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAGAAAGAACTGTTGATTCACTTGAATGTATGCATATATTTACTCAGATTGTAGAGATTGTAAAACTCGCACATACTCAAGGGATAGCTGTGCATAATGTGCGCCCATCATGTTTTGTTATGTCTTCATTTAACCGTGTTGCGTTTATTGAATCTGCTTCCTGCTCTGATTCGGGATCGGATTCATGTGAAGATGAACCAAACAGTTCATCTTCACCTTTGCAACTTGAGATGATTCCTGGGAAGGACTCTGCTATAGCATCTGAAAGCAGTTGCTTGCAGTCAAGTTCAGGTCATATGGTGCAGACTTTGGAAGCTAATAAGAATAGACAAGAGGAAGATAACAACAAGCATAATTTTCCAATGAAACAGATATTGCACTTGGAAACTAATTGGTATACTAGTCCAGAAGAGGTTAATGATGCTCCAGGCACTTGTGCTTCAGACATTTATCGACTCGGAGTGCTTCTCTTTGAG : CTATACTGCACCTTCAACTCATCAGATGAGAAAATTGCAAATATGTCATGTCTAAGACATCGTGTCCTACCCCCACAGTTGTTGTTGAAATGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACACCCGGACCCAAGTAGTCGGCCAAAAGTGGG : TGAGTTGCTAGAAAGTGAGTTCCTTAAAACTCCAAGGCATGACTTGGAAGAACGTGAAGCAGCGATAGAGCTTAGAGAAAAAATAGATGAGCAGGAATTATTACTGGAGTTCCTTTTACTAATCCAACAGAAAAAGCAGGAGGCTGTGGAAAATTTGCACGAAATTGTGTCTTTTTTGTC</gDNA_template>
            <first_frame> S  R  K  N  C  *  F  T  *  M  Y  A  Y  I  Y  S  D  C  R  D  C  K  T  R  T  Y  S  R  D  S  C  A  *  C  A  P  I  M  F  C  Y  V  F  I  *  P  C  C  V  Y  *  I  C  F  L  L  *  F  G  I  G  F  M  *  R  *  T  K  Q  F  I  F  T  F  A  T  *  D  D  S  W  E  G  L  C  Y  S  I  *  K  Q  L  L  A  V  K  F  R  S  Y  G  A  D  F  G  S  *  *  E  *  T  R  G  R  *  Q  Q  A  *  F  S  N  E  T  D  I  A  L  G  N  *  L  V  Y  *  S  R  R  G  *  *  C  S  R  H  L  C  F  R  H  L  S  T  R  S  A  S  L  *   : A  I  L  H  L  Q  L  I  R  *  E  N  C  K  Y  V  M  S  K  T  S  C  P  T  P  T  V  V  V  E  M  A  *  G  S  F  I  L  L  M  V  T  T  P  G  P  K  *  S  A  K  S  G  :  *  V  A  R  K  *  V  P  *  N  S  K  A  *  L  G  R  T  *  S  S  D  R  A  *  R  K  N  R  *  A  G  I  I  T  G  V  P  F  T  N  P  T  E  K  A  G  G  C  G  K  F  A  R  N  C  V  F  F  V </first_frame>
            <second_frame>  P  E  R  T  V  D  S  L  E  C  M  H  I  F  T  Q  I  V  E  I  V  K  L  A  H  T  Q  G  I  A  V  H  N  V  R  P  S  C  F  V  M  S  S  F  N  R  V  A  F  I  E  S  A  S  C  S  D  S  G  S  D  S  C  E  D  E  P  N  S  S  S  S  P  L  Q  L  E  M  I  P  G  K  D  S  A  I  A  S  E  S  S  C  L  Q  S  S  S  G  H  M  V  Q  T  L  E  A  N  K  N  R  Q  E  E  D  N  N  K  H  N  F  P  M  K  Q  I  L  H  L  E  T  N  W  Y  T  S  P  E  E  V  N  D  A  P  G  T  C  A  S  D  I  Y  R  L  G  V  L  L  F  E  :  L  Y  C  T  F  N  S  S  D  E  K  I  A  N  M  S  C  L  R  H  R  V  L  P  P  Q  L  L  L  K  W  P  K  E  A  S  F  C  L  W  L  L  H  P  D  P  S  S  R  P  K  V  G :   E  L  L  E  S  E  F  L  K  T  P  R  H  D  L  E  E  R  E  A  A  I  E  L  R  E  K  I  D  E  Q  E  L  L  L  E  F  L  L  L  I  Q  Q  K  K  Q  E  A  V  E  N  L  H  E  I  V  S  F  L   </second_frame>
            <third_frame>   Q  K  E  L  L  I  H  L  N  V  C  I  Y  L  L  R  L  *  R  L  *  N  S  H  I  L  K  G  *  L  C  I  M  C  A  H  H  V  L  L  C  L  H  L  T  V  L  R  L  L  N  L  L  P  A  L  I  R  D  R  I  H  V  K  M  N  Q  T  V  H  L  H  L  C  N  L  R  *  F  L  G  R  T  L  L  *  H  L  K  A  V  A  C  S  Q  V  Q  V  I  W  C  R  L  W  K  L  I  R  I  D  K  R  K  I  T  T  S  I  I  F  Q  *  N  R  Y  C  T  W  K  L  I  G  I  L  V  Q  K  R  L  M  M  L  Q  A  L  V  L  Q  T  F  I  D  S  E  C  F  S  L  S :   Y  T  A  P  S  T  H  Q  M  R  K  L  Q  I  C  H  V  *  D  I  V  S  Y  P  H  S  C  C  *  N  G  L  R  K  L  H  F  A  Y  G  Y  Y  T  R  T  Q  V  V  G  Q  K  W   : V  S  C  *  K  V  S  S  L  K  L  Q  G  M  T  W  K  N  V  K  Q  R  *  S  L  E  K  K  *  M  S  R  N  Y  Y  W  S  S  F  Y  *  S  N  R  K  S  R  R  L  W  K  I  C  T  K  L  C  L  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58511" stop="58987"/>
                    <exon start="59100" stop="59257"/>
                    <exon start="60015" stop="60192"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PERTVDSLECMHIFTQIVEIVKLAHTQGIAVHNVRPSCFVMSSFNRVAFIESASCSDSGSDSCEDEPNSSSSPLQLEMIPGKDSAIASESSCLQSSSGHMVQTLEANKNRQEEDNNKHNFPMKQILHLETNWYTSPEEVNDAPGTCASDIYRLGVLLFELYCTFNSSDEKIANMSCLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPKVGELLESEFLKTPRHDLEEREAAIELREKIDEQELLLEFLLLIQQKKQEAVENLHEIVSFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="60443" PGL_stop="66061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60443" e_stop="61005"/>
            <exon e_start="61083" e_stop="61229"/>
            <exon e_start="61358" e_stop="61669"/>
            <exon e_start="63269" e_stop="63328"/>
            <exon e_start="65285" e_stop="66061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60443" e_stop="61005" e_length="563"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.909">
            <gDNA_intron_boundary i_start="61006" i_stop="61082" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61083" e_stop="61229" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61230" i_stop="61357" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61358" e_stop="61669" e_length="312"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="61670" i_stop="63268" i_length="1599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63269" e_stop="63328" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="63329" i_stop="65284" i_length="1956"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65285" e_stop="66061" e_length="777"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60443" stop="61005"/>
              <exon start="61083" stop="61137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60736" stop="61005"/>
              <exon start="61083" stop="61229"/>
              <exon start="61358" stop="61669"/>
              <exon start="63269" stop="63284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60955" stop="61005"/>
              <exon start="61083" stop="61229"/>
              <exon start="61358" stop="61669"/>
              <exon start="63269" stop="63328"/>
              <exon start="65285" stop="65648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60955" stop="61005"/>
              <exon start="61083" stop="61229"/>
              <exon start="61358" stop="61669"/>
              <exon start="63269" stop="63328"/>
              <exon start="65285" stop="65567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65597" stop="66061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65650" stop="66061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGCATATTGAAAATAAAAGCAGCATTTCGGCAAAAAGTTCTCGGTTGATGAAAAACTTCAGAAAATTGGAGGCAGCTTATTTCATGACGAGACGCAGGGTTATTAAAAGGGACAAATCTATGAGTAGAAACTGTCAAACAAGTCCGGAATGTAAAAGTTCCGCTACAGCTACTGAAAGGAGTTCTCTGAGTAATTTGTCATCAAAGGGAGGGTGCAATGGTGATAGACAGAGGGGATGGATCAATTCATACTTGGAGGGCCTATGCAAGTACTTCTCTTTTAGCAAGTTAGAAGTGAAGGCAGATTTAAAGCAAGGGGATCTTCTAAACCCTTCCAATCTCGTATGTTCTCTCAGCTTTGATCGTGATGGTGAATTTTTTGCAACTGCTGGTGTAAATAAGAAGATCAAAGTTTTTGAATATAACTCAATTCTAAATGCGGATCGTGACATACACTATCCAGTCGTTGAAATGGCTAATAGATCAAAGTTGAGCAGTATATGTTGGAACGGCTATATCAAAAGCCAGCTTGCCTCAAGTAACTTTGAAGGTGTGGTGCAG : GTATGGGATGTCACAAGAAGTCAGCTTTTCATGGAGATGAGAGAGCATGAGAAACGTGTCTGGTCTGTTGATTTTTCTTTAGCAGATCCAACCATGTTGGCAAGTGGGAGCGATGATGGTTCTGTGAAGCTTTGGAATATCAATCAG : GGAGTCAGTGTTGGAACGATAAAAACAAAAGCCAATGTCTGCTGTGTTCAGTTCCCTGTTGATTCAGGTCGGGCCCTTGCTTTTGGTTCAGCAGATCATAAGATATATTACTATGACCTACGAAACTCGAAGTTGCCTCTATGCACATTAATTGGGCACAACAAGACAGTGAGCTATGTCAAGTTCATAGATTCAACAACTCTTGTGTCTGCATCTACGGACAATACAATAAAGCTGTGGGATCTGTCAACATGCACATCTCGTATTCTTGATTCTCCTCTTCAGTCATTTACTGGACATATGAATGTAAAG : AACTTTGTTGGCCTATCTGTATCTGATGGTTACATAGCAACTGGCTCAGAGACAAATGAG : GTTGTCATCTACCACAAAGCTTTTCCCATGCCAGCATTGTCATTTAAATTTAACTGCACAGATCCGCTTTCTGGTGATGAAGTGGACGACAGTGCACAGTTCATCTCATCTGTGTGTTGGCGTGGTCAGTCCCCTTCTTTAGTTGCCGCAAATTCTATGGGAAATATCAAGCTCTTGGAGATGGTATAATGTGGTTTAATTCCATGAAGGTTGACTAGTTACTTCAAGATGAGGAAAGGTGTGAAGGAGAAGAGTTCGGTAAATGTCAATGAGGGAGTTACATCAAGATATTGTTGTAGAAGAGATAAACTCGATACGATGCCATGGTAACAAGGAAGTTGCCATCAAGAAACAAATATTTTTGTAGTTAGTTCATAGCGGAAGCAACTCGATGGAAGCATGAGATTTTTCTCATCGTGGAATGTGCTGTAAATAGATATTGGTTAGGGGGTGTGGGAAGGAAGCGATGCAAGTGTTATTCTCTTTGTATATTCTGTAATTTTGAGGTCTAACGGAGATTTCATGAATGTTATATCTTTGCCTGATGACAGTGAGTAGAAGAATACAAGCAGCGTCTTAGAATCCATGCTGTATCTCATTTAGTTCACACTGATCTGATCAGCTGCTAAACACGCGAGTACAAGGAAGCAGAGGTAACATTTCAGATTATTCACTTTCGAGTACATTCTGTCTAAGATATGTATGCTGTTCATAACCAGCCAACTTGTTTGACAGAAAAAACATACAAAATCATGAATACAAAGTTTCCATCATTCA</gDNA_template>
            <first_frame> K  G  I  L  K  I  K  A  A  F  R  Q  K  V  L  G  *  *  K  T  S  E  N  W  R  Q  L  I  S  *  R  D  A  G  L  L  K  G  T  N  L  *  V  E  T  V  K  Q  V  R  N  V  K  V  P  L  Q  L  L  K  G  V  L  *  V  I  C  H  Q  R  E  G  A  M  V  I  D  R  G  D  G  S  I  H  T  W  R  A  Y  A  S  T  S  L  L  A  S  *  K  *  R  Q  I  *  S  K  G  I  F  *  T  L  P  I  S  Y  V  L  S  A  L  I  V  M  V  N  F  L  Q  L  L  V  *  I  R  R  S  K  F  L  N  I  T  Q  F  *  M  R  I  V  T  Y  T  I  Q  S  L  K  W  L  I  D  Q  S  *  A  V  Y  V  G  T  A  I  S  K  A  S  L  P  Q  V  T  L  K  V  W  C  R :   Y  G  M  S  Q  E  V  S  F  S  W  R  *  E  S  M  R  N  V  S  G  L  L  I  F  L  *  Q  I  Q  P  C  W  Q  V  G  A  M  M  V  L  *  S  F  G  I  S  I  R :   E  S  V  L  E  R  *  K  Q  K  P  M  S  A  V  F  S  S  L  L  I  Q  V  G  P  L  L  L  V  Q  Q  I  I  R  Y  I  T  M  T  Y  E  T  R  S  C  L  Y  A  H  *  L  G  T  T  R  Q  *  A  M  S  S  S  *  I  Q  Q  L  L  C  L  H  L  R  T  I  Q  *  S  C  G  I  C  Q  H  A  H  L  V  F  L  I  L  L  F  S  H  L  L  D  I  *  M  *  R :   T  L  L  A  Y  L  Y  L  M  V  T  *  Q  L  A  Q  R  Q  M  R :   L  S  S  T  T  K  L  F  P  C  Q  H  C  H  L  N  L  T  A  Q  I  R  F  L  V  M  K  W  T  T  V  H  S  S  S  H  L  C  V  G  V  V  S  P  L  L  *  L  P  Q  I  L  W  E  I  S  S  S  W  R  W  Y  N  V  V  *  F  H  E  G  *  L  V  T  S  R  *  G  K  V  *  R  R  R  V  R  *  M  S  M  R  E  L  H  Q  D  I  V  V  E  E  I  N  S  I  R  C  H  G  N  K  E  V  A  I  K  K  Q  I  F  L  *  L  V  H  S  G  S  N  S  M  E  A  *  D  F  S  H  R  G  M  C  C  K  *  I  L  V  R  G  C  G  K  E  A  M  Q  V  L  F  S  L  Y  I  L  *  F  *  G  L  T  E  I  S  *  M  L  Y  L  C  L  M  T  V  S  R  R  I  Q  A  A  S  *  N  P  C  C  I  S  F  S  S  H  *  S  D  Q  L  L  N  T  R  V  Q  G  S  R  G  N  I  S  D  Y  S  L  S  S  T  F  C  L  R  Y  V  C  C  S  *  P  A  N  L  F  D  R  K  N  I  Q  N  H  E  Y  K  V  S  I  I   </first_frame>
            <second_frame>  K  A  Y  *  K  *  K  Q  H  F  G  K  K  F  S  V  D  E  K  L  Q  K  I  G  G  S  L  F  H  D  E  T  Q  G  Y  *  K  G  Q  I  Y  E  *  K  L  S  N  K  S  G  M  *  K  F  R  Y  S  Y  *  K  E  F  S  E  *  F  V  I  K  G  R  V  Q  W  *  *  T  E  G  M  D  Q  F  I  L  G  G  P  M  Q  V  L  L  F  *  Q  V  R  S  E  G  R  F  K  A  R  G  S  S  K  P  F  Q  S  R  M  F  S  Q  L  *  S  *  W  *  I  F  C  N  C  W  C  K  *  E  D  Q  S  F  *  I  *  L  N  S  K  C  G  S  *  H  T  L  S  S  R  *  N  G  *  *  I  K  V  E  Q  Y  M  L  E  R  L  Y  Q  K  P  A  C  L  K  *  L  *  R  C  G  A   : G  M  G  C  H  K  K  S  A  F  H  G  D  E  R  A  *  E  T  C  L  V  C  *  F  F  F  S  R  S  N  H  V  G  K  W  E  R  *  W  F  C  E  A  L  E  Y  Q  S   : G  S  Q  C  W  N  D  K  N  K  S  Q  C  L  L  C  S  V  P  C  *  F  R  S  G  P  C  F  W  F  S  R  S  *  D  I  L  L  *  P  T  K  L  E  V  A  S  M  H  I  N  W  A  Q  Q  D  S  E  L  C  Q  V  H  R  F  N  N  S  C  V  C  I  Y  G  Q  Y  N  K  A  V  G  S  V  N  M  H  I  S  Y  S  *  F  S  S  S  V  I  Y  W  T  Y  E  C  K   : E  L  C  W  P  I  C  I  *  W  L  H  S  N  W  L  R  D  K  *   : G  C  H  L  P  Q  S  F  S  H  A  S  I  V  I  *  I  *  L  H  R  S  A  F  W  *  *  S  G  R  Q  C  T  V  H  L  I  C  V  L  A  W  S  V  P  F  F  S  C  R  K  F  Y  G  K  Y  Q  A  L  G  D  G  I  M  W  F  N  S  M  K  V  D  *  L  L  Q  D  E  E  R  C  E  G  E  E  F  G  K  C  Q  *  G  S  Y  I  K  I  L  L  *  K  R  *  T  R  Y  D  A  M  V  T  R  K  L  P  S  R  N  K  Y  F  C  S  *  F  I  A  E  A  T  R  W  K  H  E  I  F  L  I  V  E  C  A  V  N  R  Y  W  L  G  G  V  G  R  K  R  C  K  C  Y  S  L  C  I  F  C  N  F  E  V  *  R  R  F  H  E  C  Y  I  F  A  *  *  Q  *  V  E  E  Y  K  Q  R  L  R  I  H  A  V  S  H  L  V  H  T  D  L  I  S  C  *  T  R  E  Y  K  E  A  E  V  T  F  Q  I  I  H  F  R  V  H  S  V  *  D  M  Y  A  V  H  N  Q  P  T  C  L  T  E  K  T  Y  K  I  M  N  T  K  F  P  S  F  </second_frame>
            <third_frame>   R  H  I  E  N  K  S  S  I  S  A  K  S  S  R  L  M  K  N  F  R  K  L  E  A  A  Y  F  M  T  R  R  R  V  I  K  R  D  K  S  M  S  R  N  C  Q  T  S  P  E  C  K  S  S  A  T  A  T  E  R  S  S  L  S  N  L  S  S  K  G  G  C  N  G  D  R  Q  R  G  W  I  N  S  Y  L  E  G  L  C  K  Y  F  S  F  S  K  L  E  V  K  A  D  L  K  Q  G  D  L  L  N  P  S  N  L  V  C  S  L  S  F  D  R  D  G  E  F  F  A  T  A  G  V  N  K  K  I  K  V  F  E  Y  N  S  I  L  N  A  D  R  D  I  H  Y  P  V  V  E  M  A  N  R  S  K  L  S  S  I  C  W  N  G  Y  I  K  S  Q  L  A  S  S  N  F  E  G  V  V  Q  :  V  W  D  V  T  R  S  Q  L  F  M  E  M  R  E  H  E  K  R  V  W  S  V  D  F  S  L  A  D  P  T  M  L  A  S  G  S  D  D  G  S  V  K  L  W  N  I  N  Q  :  G  V  S  V  G  T  I  K  T  K  A  N  V  C  C  V  Q  F  P  V  D  S  G  R  A  L  A  F  G  S  A  D  H  K  I  Y  Y  Y  D  L  R  N  S  K  L  P  L  C  T  L  I  G  H  N  K  T  V  S  Y  V  K  F  I  D  S  T  T  L  V  S  A  S  T  D  N  T  I  K  L  W  D  L  S  T  C  T  S  R  I  L  D  S  P  L  Q  S  F  T  G  H  M  N  V  K  :  N  F  V  G  L  S  V  S  D  G  Y  I  A  T  G  S  E  T  N  E  :  V  V  I  Y  H  K  A  F  P  M  P  A  L  S  F  K  F  N  C  T  D  P  L  S  G  D  E  V  D  D  S  A  Q  F  I  S  S  V  C  W  R  G  Q  S  P  S  L  V  A  A  N  S  M  G  N  I  K  L  L  E  M  V  *  C  G  L  I  P  *  R  L  T  S  Y  F  K  M  R  K  G  V  K  E  K  S  S  V  N  V  N  E  G  V  T  S  R  Y  C  C  R  R  D  K  L  D  T  M  P  W  *  Q  G  S  C  H  Q  E  T  N  I  F  V  V  S  S  *  R  K  Q  L  D  G  S  M  R  F  F  S  S  W  N  V  L  *  I  D  I  G  *  G  V  W  E  G  S  D  A  S  V  I  L  F  V  Y  S  V  I  L  R  S  N  G  D  F  M  N  V  I  S  L  P  D  D  S  E  *  K  N  T  S  S  V  L  E  S  M  L  Y  L  I  *  F  T  L  I  *  S  A  A  K  H  A  S  T  R  K  Q  R  *  H  F  R  L  F  T  F  E  Y  I  L  S  K  I  C  M  L  F  I  T  S  Q  L  V  *  Q  K  K  H  T  K  S  *  I  Q  S  F  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60445" stop="61005"/>
                    <exon start="61083" stop="61229"/>
                    <exon start="61358" stop="61669"/>
                    <exon start="63269" stop="63328"/>
                    <exon start="65285" stop="65473"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHIENKSSISAKSSRLMKNFRKLEAAYFMTRRRVIKRDKSMSRNCQTSPECKSSATATERSSLSNLSSKGGCNGDRQRGWINSYLEGLCKYFSFSKLEVKADLKQGDLLNPSNLVCSLSFDRDGEFFATAGVNKKIKVFEYNSILNADRDIHYPVVEMANRSKLSSICWNGYIKSQLASSNFEGVVQVWDVTRSQLFMEMREHEKRVWSVDFSLADPTMLASGSDDGSVKLWNINQGVSVGTIKTKANVCCVQFPVDSGRALAFGSADHKIYYYDLRNSKLPLCTLIGHNKTVSYVKFIDSTTLVSASTDNTIKLWDLSTCTSRILDSPLQSFTGHMNVKNFVGLSVSDGYIATGSETNEVVIYHKAFPMPALSFKFNCTDPLSGDEVDDSAQFISSVCWRGQSPSLVAANSMGNIKLLEMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="66769" PGL_stop="66297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66769" e_stop="66297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66769" e_stop="66297" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66769" stop="66297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCACCAGAATTCACTTCAACTGTTATCAACCATGACATGCACTATATTTCTTGGGATGTTCCTCCAAGACAGCATCCACATACACTTACCCTCAATGACACTGCAAATATGATAGCAAGTGGAGCAGCGTTTGCGCGCAAGTTCAAGCAAGATGATCCTGTTTTAGACAAGATTGATATGGAATTACTAAATAGGAGTAATGGTAGCTTCACACCTGGTGGTTGGTGTGCTGGAAATCCTCCTTGTTCTAAAGTTGGAAATCCAACAAAACTTAGGCCAGGTCCAGGGGGTCAAAGACTTCGACGTCTTATTGATGAACTAGTATTTTCAGCTAAATATGGTCAGAACCAGTGTAGTTAGATCTTTGTTGTATTTGCATCCTTGCTTGCTAATCCACAAAAGCAGGGGGGACAAAAATGTATCATTAAAAGAGCCAGACAAATATATCGACAATGAACTCAGCCATTTGTC</gDNA_template>
            <first_frame> M  H  Q  N  S  L  Q  L  L  S  T  M  T  C  T  I  F  L  G  M  F  L  Q  D  S  I  H  I  H  L  P  S  M  T  L  Q  I  *  *  Q  V  E  Q  R  L  R  A  S  S  S  K  M  I  L  F  *  T  R  L  I  W  N  Y  *  I  G  V  M  V  A  S  H  L  V  V  G  V  L  E  I  L  L  V  L  K  L  E  I  Q  Q  N  L  G  Q  V  Q  G  V  K  D  F  D  V  L  L  M  N  *  Y  F  Q  L  N  M  V  R  T  S  V  V  R  S  L  L  Y  L  H  P  C  L  L  I  H  K  S  R  G  D  K  N  V  S  L  K  E  P  D  K  Y  I  D  N  E  L  S  H  L   </first_frame>
            <second_frame>  C  T  R  I  H  F  N  C  Y  Q  P  *  H  A  L  Y  F  L  G  C  S  S  K  T  A  S  T  Y  T  Y  P  Q  *  H  C  K  Y  D  S  K  W  S  S  V  C  A  Q  V  Q  A  R  *  S  C  F  R  Q  D  *  Y  G  I  T  K  *  E  *  W  *  L  H  T  W  W  L  V  C  W  K  S  S  L  F  *  S  W  K  S  N  K  T  *  A  R  S  R  G  S  K  T  S  T  S  Y  *  *  T  S  I  F  S  *  I  W  S  E  P  V  *  L  D  L  C  C  I  C  I  L  A  C  *  S  T  K  A  G  G  T  K  M  Y  H  *  K  S  Q  T  N  I  S  T  M  N  S  A  I  C  </second_frame>
            <third_frame>   A  P  E  F  T  S  T  V  I  N  H  D  M  H  Y  I  S  W  D  V  P  P  R  Q  H  P  H  T  L  T  L  N  D  T  A  N  M  I  A  S  G  A  A  F  A  R  K  F  K  Q  D  D  P  V  L  D  K  I  D  M  E  L  L  N  R  S  N  G  S  F  T  P  G  G  W  C  A  G  N  P  P  C  S  K  V  G  N  P  T  K  L  R  P  G  P  G  G  Q  R  L  R  R  L  I  D  E  L  V  F  S  A  K  Y  G  Q  N  Q  C  S  *  I  F  V  V  F  A  S  L  L  A  N  P  Q  K  Q  G  G  Q  K  C  I  I  K  R  A  R  Q  I  Y  R  Q  *  T  Q  P  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66767" stop="66408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APEFTSTVINHDMHYISWDVPPRQHPHTLTLNDTANMIASGAAFARKFKQDDPVLDKIDMELLNRSNGSFTPGGWCAGNPPCSKVGNPTKLRPGPGGQRLRRLIDELVFSAKYGQNQCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="71997" PGL_stop="70283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71997" e_stop="70283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="71997" e_stop="70283" e_length="1715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71997" stop="71298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71432" stop="70798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71392" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71392" stop="70820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71342" stop="70793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71180" stop="70417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="70583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70849" stop="70451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70663" stop="70283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATAATGCAAAAAGATAAAGATTTTGAGCCAAAATCTATTCACGAATGTAGACAAAGAAATGATTGGCCAAAATGAAAGGATGCAATTCAAGCTGAATTGACTTCACTAGAAAAACGTGAAGTTTTTAGATCAATAATCCGAACACCTAAAGGTATTAAGCCAGTGGGATACAAATGGTTTTTTGTACGTAAATGAAATGAGAAAGGTGAAGTCGTGAGATATAAGGCCTGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGATCACCTTCAGATATCTCATAAATCTGACAGTTCATGAAAAACTTGAAATGCGTCTAATGGACATTGTCACAACCTATCTACATGACTAATTGTACTACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGAATTGAAACAATCAGGAAGAATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTTCCTGCATTTTCATTAAATGGTCGAGGTCTGAATTTGTTATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAATATCTCGGCAAGACAAAATTTTATCTTGGCCTACAAATTGAGAATTTATCAAATGGAATACTTGTTCATCAATCAACGTAAAAAAAAATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGTTTGACATCAATACAAACCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTTAGTGCGATTGGGACACAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTTGAAAGATTCAGTTCCTCTCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCAGGGGACCATGAACATGGTTTTATTCTATTCTAATGAATCGAAGTCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCTAATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGACAATATCTTGGTGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATTATGCAGAAATAGTAGTCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAAGGTGTGGATTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTTTAGCTCAATTGAAAGAAGGATACATCAAATGAGACCGGACAAAGCATATTTCACCAAAGTTCTTTTTCACGCATGTTCTTCAACAATATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGGATGCACCGTCTCCGAGATATCAAGTAAAATTTTCATCAGGGGGAGCGCATTATGCGTTGTACTCTTTTTCTTAACTATGGTTTTGTCCCAAGTTGGATTTTCCTGGTAAGGTTTTTAAC</gDNA_template>
            <first_frame> T  *  C  K  K  I  K  I  L  S  Q  N  L  F  T  N  V  D  K  E  M  I  G  Q  N  E  R  M  Q  F  K  L  N  *  L  H  *  K  N  V  K  F  L  D  Q  *  S  E  H  L  K  V  L  S  Q  W  D  T  N  G  F  L  Y  V  N  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  Q  I  T  F  R  Y  L  I  N  L  T  V  H  E  K  L  E  M  R  L  M  D  I  V  T  T  Y  L  H  D  *  L  Y  Y  N  I  F  M  K  I  P  K  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  E  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  S  C  I  F  I  K  W  S  R  S  E  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  K  E  F  E  M  K  Y  L  G  K  T  K  F  Y  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  *  K  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  F  D  I  N  T  N  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  *  C  D  W  D  T  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  E  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  Q  G  T  M  N  M  V  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  N  P  H  K  A  R  S  Q  T  G  Y  L  F  T  C  G  D  T  T  I  S  W  *  S  M  K  Q  T  L  V  A  T  S  S  N  Y  A  E  I  V  V  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  E  R  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  L  A  Q  L  K  E  G  Y  I  K  *  D  R  T  K  H  I  S  P  K  F  F  F  T  H  V  L  Q  Q  Y  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  H  R  L  R  D  I  K  *  N  F  H  Q  G  E  R  I  M  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  I  F  L  V  R  F  L   </first_frame>
            <second_frame>  H  N  A  K  R  *  R  F  *  A  K  I  Y  S  R  M  *  T  K  K  *  L  A  K  M  K  G  C  N  S  S  *  I  D  F  T  R  K  T  *  S  F  *  I  N  N  P  N  T  *  R  Y  *  A  S  G  I  Q  M  V  F  C  T  *  M  K  *  E  R  *  S  R  E  I  *  G  L  T  R  C  S  R  F  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  R  S  P  S  D  I  S  *  I  *  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  T  N  C  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  N  *  N  N  Q  E  E  C  G  T  I  V  *  V  N  I  C  *  R  K  G  I  K  M  T  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  L  *  *  L  C  M  L  M  I  *  T  S  L  A  L  V  K  S  F  *  K  L  L  S  V  *  K  K  N  L  K  *  N  I  S  A  R  Q  N  F  I  L  A  Y  K  L  R  I  Y  Q  M  E  Y  L  F  I  N  Q  R  K  K  K  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  Q  T  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  T  F  S  A  I  G  T  Q  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  L  K  D  S  V  P  L  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  R  G  P  *  T  W  F  Y  S  I  L  M  N  R  S  Q  N  *  L  V  T  Q  M  Q  G  I  Y  L  I  R  I  K  L  D  H  K  Q  A  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  K  R  W  *  P  L  L  Q  I  M  Q  K  *  *  S  S  M  K  Q  V  E  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  G  V  D  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  K  D  T  S  N  E  T  G  Q  S  I  F  H  Q  S  S  F  S  R  M  F  F  N  N  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  G  C  T  V  S  E  I  S  S  K  I  F  I  R  G  S  A  L  C  V  V  L  F  F  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </second_frame>
            <third_frame>   I  M  Q  K  D  K  D  F  E  P  K  S  I  H  E  C  R  Q  R  N  D  W  P  K  *  K  D  A  I  Q  A  E  L  T  S  L  E  K  R  E  V  F  R  S  I  I  R  T  P  K  G  I  K  P  V  G  Y  K  W  F  F  V  R  K  *  N  E  K  G  E  V  V  R  Y  K  A  *  L  V  A  Q  G  F  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  P  D  H  L  Q  I  S  H  K  S  D  S  S  *  K  T  *  N  A  S  N  G  H  C  H  N  L  S  T  *  L  I  V  L  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  *  I  E  T  I  R  K  N  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  *  K  *  P  D  L  F  L  H  F  H  *  M  V  E  V  *  I  C  Y  N  S  C  V  C  *  *  F  E  H  H  W  H  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  I  S  R  Q  D  K  I  L  S  W  P  T  N  *  E  F  I  K  W  N  T  C  S  S  I  N  V  K  K  N  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  V  *  H  Q  Y  K  P  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  P  L  V  R  L  G  H  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  *  K  I  Q  F  L  S  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  G  D  H  E  H  G  F  I  L  F  *  *  I  E  V  R  T  D  W  L  R  R  C  R  V  F  I  *  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  D  N  I  L  V  I  N  E  A  N  V  G  S  H  F  F  K  L  C  R  N  S  S  H  P  *  S  K  S  R  V  R  L  V  E  I  N  D  P  S  Y  S  G  K  V  W  I  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  F  S  S  I  E  R  R  I  H  Q  M  R  P  D  K  A  Y  F  T  K  V  L  F  H  A  C  S  S  T  I  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  D  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  H  Y  A  L  Y  S  F  S  *  L  W  F  C  P  K  L  D  F  P  G  K  V  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71613" stop="71209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYYNIFMKIPKAFKVPEAYKDSRETCSIKLQKSLYELKQSGRMWYNRLSEYLLKKGYKNDPICSCIFIKWSRSEFVIIVVYVDDLNIIGTRKELLEAVECLKKEFEMKYLGKTKFYLGLQIENLSNGILVHQST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71061" stop="70774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDWDTMYLANNTRPDICFAVSLLERFSSSPTKRHWNGVKHILRYLQGTMNMVLFYSNESKSELIGYADAGYLSNPHKARSQTGYLFTCGDTTISW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70773" stop="70564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMKQTLVATSSNYAEIVVIHEASRECVWLRSMTHHIQERCGFSLKKNIPTTMYEDNAACLAQLKEGYIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73747" PGL_stop="73379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73747" e_stop="73379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="73747" e_stop="73379" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73747" stop="73379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAACTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAACATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGACTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTACACTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACTAAAGGTTTACTAATTTTAATGATTTTATCATTTGACATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  T  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  T  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  T  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  D  M </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  E  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  *  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  Y  T  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  L  K  V  Y  *  F  *  *  F  Y  H  L  T   </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  N  S  G  R  A  T  L  L  L  P  G  G  T  I  L  N  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  D  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  T  L  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  *  R  F  T  N  F  N  D  F  I  I  *  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73745" stop="73416"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIENSGRATLLLPGGTILNIDNALYCSKSQRNLLSFKVIRQNDYHVETANEGKVEYLYITTINVEKKIVHEKLPTLSSGLYYTSISTVESHAVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="75151" PGL_stop="74395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75151" e_stop="74395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="75151" e_stop="74395" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75151" stop="74395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATACGTTATCAGTACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTCGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGATGTTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGATAATTTGACAGTAAAAGATTCACTTGAATTGTGGACTGATTTAAAGGGGAATATGACCACCTAAAGGCAACAATGTTGCCAAGAACTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGTTGTATTAAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGATGAGGACATGTTGAAAAAGACACTTACTTCTTTCCATGCTTCAAATGTGATATTGCAGCAACAATATCGTGAAAAGGGTTTCAGAAATATTCAGAACTAATTTCATGTCTTTTGTGGCTGAGCAACATAATGATCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCTATTACTGGAGGCAAATGTGATGGGAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGAATGTGACAA</gDNA_template>
            <first_frame> N  T  L  S  V  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  S  L  C  R  I  Y  P  N  L  S  S  W  H  *  I  F  L  E  R  I  I  F  H  G  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  I  I  *  Q  *  K  I  H  L  N  C  G  L  I  *  R  G  I  *  P  P  K  G  N  N  V  A  K  N  S  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  K  D  N  L  P  V  K  I  M  W  G  D  Y  K  R  *  *  G  H  V  E  K  D  T  Y  F  F  P  C  F  K  C  D  I  A  A  T  I  S  *  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  W  L  S  N  I  M  I  F  *  *  K  I  M  K  L  V  P  L  E  L  L  Y  Y  W  R  Q  M  *  W  E  H  V  I  N  L  K  *  K  E  M  I  I  G  A  I  I  M  H  G  N  V  T  </first_frame>
            <second_frame>  I  R  Y  Q  Y  E  V  A  T  C  K  G  I  I  *  I  F  L  F  N  S  H  I  L  S  *  F  H  Y  V  E  F  I  Q  T  *  V  R  G  I  R  Y  F  W  K  E  L  S  F  M  G  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  G  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  *  F  D  S  K  R  F  T  *  I  V  D  *  F  K  G  E  Y  D  H  L  K  A  T  M  L  P  R  T  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  V  V  L  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  D  E  D  M  L  K  K  T  L  T  S  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  R  N  I  Q  N  *  F  H  V  F  C  G  *  A  T  *  *  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  D  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  M  *  Q </second_frame>
            <third_frame>   Y  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  D  V  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  D  N  L  T  V  K  D  S  L  E  L  W  T  D  L  K  G  N  M  T  T  *  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  *  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  M  R  T  C  *  K  R  H  L  L  L  S  M  L  Q  M  *  Y  C  S  N  N  I  V  K  R  V  S  E  I  F  R  T  N  F  M  S  F  V  A  E  Q  H  N  D  L  L  M  K  N  H  E  A  R  P  T  G  A  A  L  L  L  E  A  N  V  M  G  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75149" stop="74805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVISTKLLLAKVLYKYFYLIHIFSHNFIMSNLSKLEFVALDISGKNYLSWDVEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIDNLTVKDSLELWTDLKGNMTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74829" stop="74566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKGEYDHLKATMLPRTRYEWMHLRFQDFKTVIEYNSVVLRITSQLKLCGETIKDDEDMLKKTLTSFHASNVILQQQYREKGFRNIQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="76692" PGL_stop="78736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76692" e_stop="76797"/>
            <exon e_start="77900" e_stop="78310"/>
            <exon e_start="78712" e_stop="78736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.119" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.994" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76692" e_stop="76797" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.119" acc_prob="0.617">
            <gDNA_intron_boundary i_start="76798" i_stop="77899" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="77900" e_stop="78310" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78311" i_stop="78711" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78712" e_stop="78736" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76692" stop="76797"/>
              <exon start="77900" stop="78310"/>
              <exon start="78712" stop="78736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAACAAAATAATAATAATAAAAAAAAATCATATTTTCTTTTGGTGTTTGATTATTTCCTTTTTTTAACTTTCAATCTGTGTTGATCTTGATCTTATAAG : GATTTTAGAGTTGAAGGCTGAGTTTTGTTTGTTTCTCAGTGAATTGTGGTTAGAGATATGGCGTCTCAGTCAGCTCGTGTTCCAGCTGAAACTGTAAGCGAAAAGAAAAACCTTCCGAAGGAAAATAAGAAAATGAATAATGGTGCGAAGGTTAATGAGCCTATTAAATTTGGCTCTCATGGTACTAAAGAACCAATTAAGGAGGAAGGGAAAAAAGTTCCTGTTACCGCCCTCCGAAAGGATGCAGTTGAGGACTGGCCTGAACCTAAGCAGATCCATTCTTTCTACATTGTAAGATATCGAAGATTTGAAGACCAAAACCTGAAGCCCAAATTTGATCAGGCAGAAAAAGAGCTACAGAAAATGAACAAAACAAGATTTCAGCTTATTGAAAAATTGCGAGCCAGGAGG : GCTGAACGATCAGAGTTGTTTGGTC</gDNA_template>
            <first_frame> K  K  K  T  K  *  *  *  *  K  K  I  I  F  S  F  G  V  *  L  F  P  F  F  N  F  Q  S  V  L  I  L  I  L  *   : G  F  *  S  *  R  L  S  F  V  C  F  S  V  N  C  G  *  R  Y  G  V  S  V  S  S  C  S  S  *  N  C  K  R  K  E  K  P  S  E  G  K  *  E  N  E  *  W  C  E  G  *  *  A  Y  *  I  W  L  S  W  Y  *  R  T  N  *  G  G  R  E  K  S  S  C  Y  R  P  P  K  G  C  S  *  G  L  A  *  T  *  A  D  P  F  F  L  H  C  K  I  S  K  I  *  R  P  K  P  E  A  Q  I  *  S  G  R  K  R  A  T  E  N  E  Q  N  K  I  S  A  Y  *  K  I  A  S  Q  E   : G  *  T  I  R  V  V  W   </first_frame>
            <second_frame>  K  K  K  Q  N  N  N  N  K  K  K  S  Y  F  L  L  V  F  D  Y  F  L  F  L  T  F  N  L  C  *  S  *  S  Y  K  :  D  F  R  V  E  G  *  V  L  F  V  S  Q  *  I  V  V  R  D  M  A  S  Q  S  A  R  V  P  A  E  T  V  S  E  K  K  N  L  P  K  E  N  K  K  M  N  N  G  A  K  V  N  E  P  I  K  F  G  S  H  G  T  K  E  P  I  K  E  E  G  K  K  V  P  V  T  A  L  R  K  D  A  V  E  D  W  P  E  P  K  Q  I  H  S  F  Y  I  V  R  Y  R  R  F  E  D  Q  N  L  K  P  K  F  D  Q  A  E  K  E  L  Q  K  M  N  K  T  R  F  Q  L  I  E  K  L  R  A  R  R  :  A  E  R  S  E  L  F  G  </second_frame>
            <third_frame>   K  K  N  K  I  I  I  I  K  K  N  H  I  F  F  W  C  L  I  I  S  F  F  *  L  S  I  C  V  D  L  D  L  I  R :   I  L  E  L  K  A  E  F  C  L  F  L  S  E  L  W  L  E  I  W  R  L  S  Q  L  V  F  Q  L  K  L  *  A  K  R  K  T  F  R  R  K  I  R  K  *  I  M  V  R  R  L  M  S  L  L  N  L  A  L  M  V  L  K  N  Q  L  R  R  K  G  K  K  F  L  L  P  P  S  E  R  M  Q  L  R  T  G  L  N  L  S  R  S  I  L  S  T  L  *  D  I  E  D  L  K  T  K  T  *  S  P  N  L  I  R  Q  K  K  S  Y  R  K  *  T  K  Q  D  F  S  L  L  K  N  C  E  P  G  G :   L  N  D  Q  S  C  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77942" stop="78310"/>
                    <exon start="78712" stop="78735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVVRDMASQSARVPAETVSEKKNLPKENKKMNNGAKVNEPIKFGSHGTKEPIKEEGKKVPVTALRKDAVEDWPEPKQIHSFYIVRYRRFEDQNLKPKFDQAEKELQKMNKTRFQLIEKLRARRAERSELFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="80914" PGL_stop="81355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80914" e_stop="81355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="80914" e_stop="81355" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80914" stop="81355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80951" stop="81355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80990" stop="81355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAAAGGTAAAGCTGTCAAGCATCGAGCAGCACGAGCAAAAAACACAGAAATTCCTAAAACTATACTTAAACGCAAAAAGGCGATTAACTATTGGCTATTGGCTGCTCCTGCTGCGCTTGTAGTTCCGCTACTTCTTCTAGCATTCTCACATCTTCTCTAGGATAATATGAAAGACAAGAAGTAGAGGGGGGGAAACTTGGTATTGCTTAGAGTGTTGCAATATCAAGGTCTATTTTTTGTAATTTCAAATCATGCCTATCTTTTTTCAGTCATAATGTTGCTGGTAGATAAGGCATTCAAGAGTAACTAAGCTTGTTTGATGTTGGTTGGTATAGTAGTTTCAAGTTTTGACATTTGCTTAAAGATTTTTATCTTTGGCATTAATTGTAAACATCTAAGTTCTTTATGATCTGCCTACATTCTGTTTCATTGAAACAAA</gDNA_template>
            <first_frame> A  *  R  *  S  C  Q  A  S  S  S  T  S  K  K  H  R  N  S  *  N  Y  T  *  T  Q  K  G  D  *  L  L  A  I  G  C  S  C  C  A  C  S  S  A  T  S  S  S  I  L  T  S  S  L  G  *  Y  E  R  Q  E  V  E  G  G  K  L  G  I  A  *  S  V  A  I  S  R  S  I  F  C  N  F  K  S  C  L  S  F  F  S  H  N  V  A  G  R  *  G  I  Q  E  *  L  S  L  F  D  V  G  W  Y  S  S  F  K  F  *  H  L  L  K  D  F  Y  L  W  H  *  L  *  T  S  K  F  F  M  I  C  L  H  S  V  S  L  K  Q  </first_frame>
            <second_frame>  P  K  G  K  A  V  K  H  R  A  A  R  A  K  N  T  E  I  P  K  T  I  L  K  R  K  K  A  I  N  Y  W  L  L  A  A  P  A  A  L  V  V  P  L  L  L  L  A  F  S  H  L  L  *  D  N  M  K  D  K  K  *  R  G  G  N  L  V  L  L  R  V  L  Q  Y  Q  G  L  F  F  V  I  S  N  H  A  Y  L  F  S  V  I  M  L  L  V  D  K  A  F  K  S  N  *  A  C  L  M  L  V  G  I  V  V  S  S  F  D  I  C  L  K  I  F  I  F  G  I  N  C  K  H  L  S  S  L  *  S  A  Y  I  L  F  H  *  N  K </second_frame>
            <third_frame>   L  K  V  K  L  S  S  I  E  Q  H  E  Q  K  T  Q  K  F  L  K  L  Y  L  N  A  K  R  R  L  T  I  G  Y  W  L  L  L  L  R  L  *  F  R  Y  F  F  *  H  S  H  I  F  S  R  I  I  *  K  T  R  S  R  G  G  E  T  W  Y  C  L  E  C  C  N  I  K  V  Y  F  L  *  F  Q  I  M  P  I  F  F  Q  S  *  C  C  W  *  I  R  H  S  R  V  T  K  L  V  *  C  W  L  V  *  *  F  Q  V  L  T  F  A  *  R  F  L  S  L  A  L  I  V  N  I  *  V  L  Y  D  L  P  T  F  C  F  I  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0029N13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="82430" PGL_stop="91141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82430" e_stop="82599"/>
            <exon e_start="84973" e_stop="85082"/>
            <exon e_start="85237" e_stop="85368"/>
            <exon e_start="85447" e_stop="85520"/>
            <exon e_start="85616" e_stop="85721"/>
            <exon e_start="87002" e_stop="87070"/>
            <exon e_start="87356" e_stop="87616"/>
            <exon e_start="88907" e_stop="89006"/>
            <exon e_start="90515" e_stop="91141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.893" e_score="0.994"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="82430" e_stop="82599" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.893">
            <gDNA_intron_boundary i_start="82600" i_stop="84972" i_length="2373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84973" e_stop="85082" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="85083" i_stop="85236" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85237" e_stop="85368" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85369" i_stop="85446" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85447" e_stop="85520" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85521" i_stop="85615" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85616" e_stop="85721" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="85722" i_stop="87001" i_length="1280"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87002" e_stop="87070" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.988">
            <gDNA_intron_boundary i_start="87071" i_stop="87355" i_length="285"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87356" e_stop="87616" e_length="261"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.956">
            <gDNA_intron_boundary i_start="87617" i_stop="88906" i_length="1290"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88907" e_stop="89006" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89007" i_stop="90514" i_length="1508"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90515" e_stop="91141" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82430" stop="82599"/>
              <exon start="84973" stop="85082"/>
              <exon start="85237" stop="85368"/>
              <exon start="85447" stop="85520"/>
              <exon start="85616" stop="85635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82432" stop="82599"/>
              <exon start="84973" stop="85082"/>
              <exon start="85237" stop="85368"/>
              <exon start="85447" stop="85497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82435" stop="82599"/>
              <exon start="84973" stop="85082"/>
              <exon start="85237" stop="85368"/>
              <exon start="85447" stop="85520"/>
              <exon start="85616" stop="85721"/>
              <exon start="87002" stop="87070"/>
              <exon start="87356" stop="87616"/>
              <exon start="88907" stop="89006"/>
              <exon start="90515" stop="91118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88974" stop="89006"/>
              <exon start="90515" stop="91141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAATGTGCGCACTACGTGTACCGGCCATGGCTGCCGCCGGCTTTGCCGCACAATCGATTCTCAGAAGAGTAGTTCCCTCATTTCTATCTACTCGTCCCACCACTCATGTCGTCGGAGACTTCTTTTCCGGTACAAACCTCATCCTCCGAACACCTCTACACCCCTCAG : CTTTTGGAATATGCAGCCTACCACAGGCTATTAAGGGTGATGCTGATATTTTACTGAAAGGAGTGAGAGACAAGAACACCATTGAAGATGTGAAACGTATTGTTGAACTG : GCAAAACGGGCATCATTAAGACGAGAAGTTTTACATACTGAGTTTCTGACTCCACCTGTATTAAAAGAGTCAATGCTAGTCTTAGAAAGGTTAGCTGATCTCAGAATAGTTGCACAAGGAGGATACCCAGAG : GCTGAACGATGCCGACTCTCAGTTGGACACGTGGAGGCATTAACAAGTGATCCAGATAATGTTGCAGCCTTGAG : TATTTCAGGGAACTTTTCATTTCAACCTTGTTCTCATGGTGATTTCCTTGGTGCAATCCTTGGTACAGGGATTGCAAGGAATAAGCTGGGAGATATACTCTTGCAG : GGTGAAAAGGGAGCTCATGTTCTTGTTGTTCCAGAACTTTCTGACTTCCTTATATCAGCATTGGACAAG : GTTGGAAATGTTTCTGTCTCTTGCAAGAAGATTCCATTGCTTGCCCTTGAATATGAACCACCAAGGTCGAAAGTGTTACACTTATAGTTCCTTTGATTTCTTCCCTTCATACACAACACATTTTTATCTAGGATATTTCCACTTTTATTTTACTTTTTCCAGGACAAAGTCCTCAAAATCCATTGAGGCATCATTGAGACTTGATGCTGTAGCTAGTGCAGGATTCAAAGTTTCTCGAACTAAAATGGCCAGTTTGATTAG : TAATGGAGATGTTCGTGTCAATTGGAGCACCGTGACAAAAAGCAATACTATCATTAAGACTGGAGACATGATATCAGTTAGCGGAGAAGGAAGACTTAAA : ATTGGGGAAATAAGCTCAACAAGGAAGGGAAAGTTCTCTGTTGAGCTCATTCGGTATTTGTAAAGCATGAAGTTATTTGGCGATATTGATTCCAACAACTTAAAGGCTGCTATAGATACTTATCAAGCCCTCATTTGCCATTCCACCGCGCTCCCTAATCAAAGGCAACTTCATACCCCAGGGATATTCGAACCCAAGATCTTTGATTAAAGATGAAAAACTACTTACCATTCCACCACAACTCCTGGTACTCGTTTGTTACCTTAAGGTGTAAATAATTCAAGCCTAGACATCTGATATTTCAAAAATATATGAGTGTAAGGAGTAGAGCTATTAACACAGGCTGGCTTGGATTGAGCGGGCTAAAGATTTGAACAGCCTAGCCAACCCAACTATTCATTTGAAAGGGCCTCCAAAATACTAGCTCAATTGAGCCCTAAGCGGCCGAGCTAGCACTAAATTGTTATTTTTTTCAGAAAAATGTATGAGTTATTTTTTTAGGAGGAAATCTTTTAAATGTAATTGTGTATTATTATTGTTGTTTTAATTGTTAAAGATTAAAGAATAAAATGTATAAAAACCTATATCCTTATTTGTTAATCTTATATGAAGAGCTAAAGCCGTCAA</gDNA_template>
            <first_frame> T  N  V  R  T  T  C  T  G  H  G  C  R  R  L  C  R  T  I  D  S  Q  K  S  S  S  L  I  S  I  Y  S  S  H  H  S  C  R  R  R  L  L  F  R  Y  K  P  H  P  P  N  T  S  T  P  L  S :   F  W  N  M  Q  P  T  T  G  Y  *  G  *  C  *  Y  F  T  E  R  S  E  R  Q  E  H  H  *  R  C  E  T  Y  C  *  T   : G  K  T  G  I  I  K  T  R  S  F  T  Y  *  V  S  D  S  T  C  I  K  R  V  N  A  S  L  R  K  V  S  *  S  Q  N  S  C  T  R  R  I  P  R   : G  *  T  M  P  T  L  S  W  T  R  G  G  I  N  K  *  S  R  *  C  C  S  L  E  :  Y  F  R  E  L  F  I  S  T  L  F  S  W  *  F  P  W  C  N  P  W  Y  R  D  C  K  E  *  A  G  R  Y  T  L  A   : G  *  K  G  S  S  C  S  C  C  S  R  T  F  *  L  P  Y  I  S  I  G  Q   : G  W  K  C  F  C  L  L  Q  E  D  S  I  A  C  P  *  I  *  T  T  K  V  E  S  V  T  L  I  V  P  L  I  S  S  L  H  T  Q  H  I  F  I  *  D  I  S  T  F  I  L  L  F  P  G  Q  S  P  Q  N  P  L  R  H  H  *  D  L  M  L  *  L  V  Q  D  S  K  F  L  E  L  K  W  P  V  *  L   : V  M  E  M  F  V  S  I  G  A  P  *  Q  K  A  I  L  S  L  R  L  E  T  *  Y  Q  L  A  E  K  E  D  L  K :   L  G  K  *  A  Q  Q  G  R  E  S  S  L  L  S  S  F  G  I  C  K  A  *  S  Y  L  A  I  L  I  P  T  T  *  R  L  L  *  I  L  I  K  P  S  F  A  I  P  P  R  S  L  I  K  G  N  F  I  P  Q  G  Y  S  N  P  R  S  L  I  K  D  E  K  L  L  T  I  P  P  Q  L  L  V  L  V  C  Y  L  K  V  *  I  I  Q  A  *  T  S  D  I  S  K  I  Y  E  C  K  E  *  S  Y  *  H  R  L  A  W  I  E  R  A  K  D  L  N  S  L  A  N  P  T  I  H  L  K  G  P  P  K  Y  *  L  N  *  A  L  S  G  R  A  S  T  K  L  L  F  F  S  E  K  C  M  S  Y  F  F  R  R  K  S  F  K  C  N  C  V  L  L  L  L  F  *  L  L  K  I  K  E  *  N  V  *  K  P  I  S  L  F  V  N  L  I  *  R  A  K  A  V   </first_frame>
            <second_frame>  P  M  C  A  L  R  V  P  A  M  A  A  A  G  F  A  A  Q  S  I  L  R  R  V  V  P  S  F  L  S  T  R  P  T  T  H  V  V  G  D  F  F  S  G  T  N  L  I  L  R  T  P  L  H  P  S   : A  F  G  I  C  S  L  P  Q  A  I  K  G  D  A  D  I  L  L  K  G  V  R  D  K  N  T  I  E  D  V  K  R  I  V  E  L  :  A  K  R  A  S  L  R  R  E  V  L  H  T  E  F  L  T  P  P  V  L  K  E  S  M  L  V  L  E  R  L  A  D  L  R  I  V  A  Q  G  G  Y  P  E  :  A  E  R  C  R  L  S  V  G  H  V  E  A  L  T  S  D  P  D  N  V  A  A  L  S :   I  S  G  N  F  S  F  Q  P  C  S  H  G  D  F  L  G  A  I  L  G  T  G  I  A  R  N  K  L  G  D  I  L  L  Q  :  G  E  K  G  A  H  V  L  V  V  P  E  L  S  D  F  L  I  S  A  L  D  K  :  V  G  N  V  S  V  S  C  K  K  I  P  L  L  A  L  E  Y  E  P  P  R  S  K  V  L  H  L  *  F  L  *  F  L  P  F  I  H  N  T  F  L  S  R  I  F  P  L  L  F  Y  F  F  Q  D  K  V  L  K  I  H  *  G  I  I  E  T  *  C  C  S  *  C  R  I  Q  S  F  S  N  *  N  G  Q  F  D  *  :  *  W  R  C  S  C  Q  L  E  H  R  D  K  K  Q  Y  Y  H  *  D  W  R  H  D  I  S  *  R  R  R  K  T  *   : N  W  G  N  K  L  N  K  E  G  K  V  L  C  *  A  H  S  V  F  V  K  H  E  V  I  W  R  Y  *  F  Q  Q  L  K  G  C  Y  R  Y  L  S  S  P  H  L  P  F  H  R  A  P  *  S  K  A  T  S  Y  P  R  D  I  R  T  Q  D  L  *  L  K  M  K  N  Y  L  P  F  H  H  N  S  W  Y  S  F  V  T  L  R  C  K  *  F  K  P  R  H  L  I  F  Q  K  Y  M  S  V  R  S  R  A  I  N  T  G  W  L  G  L  S  G  L  K  I  *  T  A  *  P  T  Q  L  F  I  *  K  G  L  Q  N  T  S  S  I  E  P  *  A  A  E  L  A  L  N  C  Y  F  F  Q  K  N  V  *  V  I  F  L  G  G  N  L  L  N  V  I  V  Y  Y  Y  C  C  F  N  C  *  R  L  K  N  K  M  Y  K  N  L  Y  P  Y  L  L  I  L  Y  E  E  L  K  P  S  </second_frame>
            <third_frame>   Q  C  A  H  Y  V  Y  R  P  W  L  P  P  A  L  P  H  N  R  F  S  E  E  *  F  P  H  F  Y  L  L  V  P  P  L  M  S  S  E  T  S  F  P  V  Q  T  S  S  S  E  H  L  Y  T  P  Q  :  L  L  E  Y  A  A  Y  H  R  L  L  R  V  M  L  I  F  Y  *  K  E  *  E  T  R  T  P  L  K  M  *  N  V  L  L  N  W :   Q  N  G  H  H  *  D  E  K  F  Y  I  L  S  F  *  L  H  L  Y  *  K  S  Q  C  *  S  *  K  G  *  L  I  S  E  *  L  H  K  E  D  T  Q  R :   L  N  D  A  D  S  Q  L  D  T  W  R  H  *  Q  V  I  Q  I  M  L  Q  P  *   : V  F  Q  G  T  F  H  F  N  L  V  L  M  V  I  S  L  V  Q  S  L  V  Q  G  L  Q  G  I  S  W  E  I  Y  S  C  R :   V  K  R  E  L  M  F  L  L  F  Q  N  F  L  T  S  L  Y  Q  H  W  T  R :   L  E  M  F  L  S  L  A  R  R  F  H  C  L  P  L  N  M  N  H  Q  G  R  K  C  Y  T  Y  S  S  F  D  F  F  P  S  Y  T  T  H  F  Y  L  G  Y  F  H  F  Y  F  T  F  S  R  T  K  S  S  K  S  I  E  A  S  L  R  L  D  A  V  A  S  A  G  F  K  V  S  R  T  K  M  A  S  L  I  S :   N  G  D  V  R  V  N  W  S  T  V  T  K  S  N  T  I  I  K  T  G  D  M  I  S  V  S  G  E  G  R  L  K  :  I  G  E  I  S  S  T  R  K  G  K  F  S  V  E  L  I  R  Y  L  *  S  M  K  L  F  G  D  I  D  S  N  N  L  K  A  A  I  D  T  Y  Q  A  L  I  C  H  S  T  A  L  P  N  Q  R  Q  L  H  T  P  G  I  F  E  P  K  I  F  D  *  R  *  K  T  T  Y  H  S  T  T  T  P  G  T  R  L  L  P  *  G  V  N  N  S  S  L  D  I  *  Y  F  K  N  I  *  V  *  G  V  E  L  L  T  Q  A  G  L  D  *  A  G  *  R  F  E  Q  P  S  Q  P  N  Y  S  F  E  R  A  S  K  I  L  A  Q  L  S  P  K  R  P  S  *  H  *  I  V  I  F  F  R  K  M  Y  E  L  F  F  *  E  E  I  F  *  M  *  L  C  I  I  I  V  V  L  I  V  K  D  *  R  I  K  C  I  K  T  Y  I  L  I  C  *  S  Y  M  K  S  *  S  R  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82431" stop="82599"/>
                    <exon start="84973" stop="85082"/>
                    <exon start="85237" stop="85368"/>
                    <exon start="85447" stop="85520"/>
                    <exon start="85616" stop="85721"/>
                    <exon start="87002" stop="87070"/>
                    <exon start="87356" stop="87442"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMCALRVPAMAAAGFAAQSILRRVVPSFLSTRPTTHVVGDFFSGTNLILRTPLHPSAFGICSLPQAIKGDADILLKGVRDKNTIEDVKRIVELAKRASLRREVLHTEFLTPPVLKESMLVLERLADLRIVAQGGYPEAERCRLSVGHVEALTSDPDNVAALSISGNFSFQPCSHGDFLGAILGTGIARNKLGDILLQGEKGAHVLVVPELSDFLISALDKVGNVSVSCKKIPLLALEYEPPRSKVLHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="101263" PGL_stop="94187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101263" e_stop="101207"/>
            <exon e_start="101116" e_stop="101026"/>
            <exon e_start="100250" e_stop="100051"/>
            <exon e_start="99742" e_stop="99673"/>
            <exon e_start="99040" e_stop="98955"/>
            <exon e_start="98350" e_stop="98261"/>
            <exon e_start="96254" e_stop="96179"/>
            <exon e_start="95410" e_stop="95283"/>
            <exon e_start="94232" e_stop="94187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.761" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.851" e_score="0.992"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101263" e_stop="101207" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101206" i_stop="101117" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101116" e_stop="101026" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.283">
            <gDNA_intron_boundary i_start="101025" i_stop="100251" i_length="775"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100250" e_stop="100051" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.720">
            <gDNA_intron_boundary i_start="100050" i_stop="99743" i_length="308"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99742" e_stop="99673" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.786" acc_prob="0.878">
            <gDNA_intron_boundary i_start="99672" i_stop="99041" i_length="632"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99040" e_stop="98955" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.761" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98954" i_stop="98351" i_length="604"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98350" e_stop="98261" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="0.985">
            <gDNA_intron_boundary i_start="98260" i_stop="96255" i_length="2006"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96254" e_stop="96179" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="96178" i_stop="95411" i_length="768"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="95410" e_stop="95283" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.851">
            <gDNA_intron_boundary i_start="95282" i_stop="94233" i_length="1050"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="94232" e_stop="94187" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101263" stop="101207"/>
              <exon start="101116" stop="101026"/>
              <exon start="100250" stop="100051"/>
              <exon start="99742" stop="99673"/>
              <exon start="99040" stop="98955"/>
              <exon start="98350" stop="98265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99692" stop="99673"/>
              <exon start="99040" stop="98955"/>
              <exon start="98350" stop="98261"/>
              <exon start="96254" stop="96179"/>
              <exon start="95410" stop="95283"/>
              <exon start="94232" stop="94187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATTGATTAAGCATTCTTTTGAGCTTCCGTCTTACAAGAAATATTCAGTAAATCG : GAATAATCATGTAGAACTAAATGCTACGAGTCTAGGCCATGGACTATCAGAAATGCAGAGGTTGCAGGAACTATGGAGATCTTGCCTTATG : TGTTTATATGAAGCTGGAAGGTACCATAAAGTTGCATTGCTGGACTTGTATTTGGAGGCATTAGATCCTGAGTTATACAACTCCAGGTTATCTAATCATGGCTGTGATAGTGCAAAAGATAGGAGCTTGTTGTCAAATAATGATAAACTTTTCAAGCTACAAAAGGCTGAGGTTACCAATCAAGTCATCCGCAAAATGAG : GGATCTACCAGCTGCGAAGCTATCCCAGTTGCTTAAGAGTTGGGAGAGGTTCACCGAAGGATCAATGGAG : GTTCATGAAAAGATTATGGAGCTACAGTCTCAAATGGTATCAGAGGATGTCAAAGGTCACAAAGCAGAATTAACTGATATATCAAA : GAGGCATATCAGTCGACGCGGTTTAAATGTGGAGAAAGATGCATGCACATCAAATGACAAAGCTGCGACTTTAGCAGGTCAAATGATAAG : GGACAGTATGCAGCCCATTGAGTGTATACCATTTCATGAACTTATTTGCTTCAAGGATGTTGACAATCTCCAATCA : GCTTTGGCTGGTGATCCAAGAAGAAGAATTCAAATTGATCTCTTGAATTTCTACAAAATTCTTAAGTGTGGATGTTGCAGCAATAGTGGTGGTACACTATCACCATCTATGCATGAGACATCAATAAT : GTATACACTGGCTCAAGAGCATGGTGATCTCATTAATCTTCATGAC</gDNA_template>
            <first_frame> G  I  D  *  A  F  F  *  A  S  V  L  Q  E  I  F  S  K  S  :  E  *  S  C  R  T  K  C  Y  E  S  R  P  W  T  I  R  N  A  E  V  A  G  T  M  E  I  L  P  Y   : V  F  I  *  S  W  K  V  P  *  S  C  I  A  G  L  V  F  G  G  I  R  S  *  V  I  Q  L  Q  V  I  *  S  W  L  *  *  C  K  R  *  E  L  V  V  K  *  *  *  T  F  Q  A  T  K  G  *  G  Y  Q  S  S  H  P  Q  N  E  :  G  S  T  S  C  E  A  I  P  V  A  *  E  L  G  E  V  H  R  R  I  N  G   : G  S  *  K  D  Y  G  A  T  V  S  N  G  I  R  G  C  Q  R  S  Q  S  R  I  N  *  Y  I  K  :  E  A  Y  Q  S  T  R  F  K  C  G  E  R  C  M  H  I  K  *  Q  S  C  D  F  S  R  S  N  D  K  :  G  Q  Y  A  A  H  *  V  Y  T  I  S  *  T  Y  L  L  Q  G  C  *  Q  S  P  I   : S  F  G  W  *  S  K  K  K  N  S  N  *  S  L  E  F  L  Q  N  S  *  V  W  M  L  Q  Q  *  W  W  Y  T  I  T  I  Y  A  *  D  I  N  N  :  V  Y  T  G  S  R  A  W  *  S  H  *  S  S  *  </first_frame>
            <second_frame>  E  L  I  K  H  S  F  E  L  P  S  Y  K  K  Y  S  V  N  R :   N  N  H  V  E  L  N  A  T  S  L  G  H  G  L  S  E  M  Q  R  L  Q  E  L  W  R  S  C  L  M  :  C  L  Y  E  A  G  R  Y  H  K  V  A  L  L  D  L  Y  L  E  A  L  D  P  E  L  Y  N  S  R  L  S  N  H  G  C  D  S  A  K  D  R  S  L  L  S  N  N  D  K  L  F  K  L  Q  K  A  E  V  T  N  Q  V  I  R  K  M  R :   D  L  P  A  A  K  L  S  Q  L  L  K  S  W  E  R  F  T  E  G  S  M  E  :  V  H  E  K  I  M  E  L  Q  S  Q  M  V  S  E  D  V  K  G  H  K  A  E  L  T  D  I  S  K :   R  H  I  S  R  R  G  L  N  V  E  K  D  A  C  T  S  N  D  K  A  A  T  L  A  G  Q  M  I  R :   D  S  M  Q  P  I  E  C  I  P  F  H  E  L  I  C  F  K  D  V  D  N  L  Q  S  :  A  L  A  G  D  P  R  R  R  I  Q  I  D  L  L  N  F  Y  K  I  L  K  C  G  C  C  S  N  S  G  G  T  L  S  P  S  M  H  E  T  S  I  M :   Y  T  L  A  Q  E  H  G  D  L  I  N  L  H  D </second_frame>
            <third_frame>   N  *  L  S  I  L  L  S  F  R  L  T  R  N  I  Q  *  I   : G  I  I  M  *  N  *  M  L  R  V  *  A  M  D  Y  Q  K  C  R  G  C  R  N  Y  G  D  L  A  L  C :   V  Y  M  K  L  E  G  T  I  K  L  H  C  W  T  C  I  W  R  H  *  I  L  S  Y  T  T  P  G  Y  L  I  M  A  V  I  V  Q  K  I  G  A  C  C  Q  I  M  I  N  F  S  S  Y  K  R  L  R  L  P  I  K  S  S  A  K  *   : G  I  Y  Q  L  R  S  Y  P  S  C  L  R  V  G  R  G  S  P  K  D  Q  W  R :   F  M  K  R  L  W  S  Y  S  L  K  W  Y  Q  R  M  S  K  V  T  K  Q  N  *  L  I  Y  Q   : R  G  I  S  V  D  A  V  *  M  W  R  K  M  H  A  H  Q  M  T  K  L  R  L  *  Q  V  K  *  *   : G  T  V  C  S  P  L  S  V  Y  H  F  M  N  L  F  A  S  R  M  L  T  I  S  N  Q :   L  W  L  V  I  Q  E  E  E  F  K  L  I  S  *  I  S  T  K  F  L  S  V  D  V  A  A  I  V  V  V  H  Y  H  H  L  C  M  R  H  Q  *   : C  I  H  W  L  K  S  M  V  I  S  L  I  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101262" stop="101207"/>
                    <exon start="101116" stop="101026"/>
                    <exon start="100250" stop="100051"/>
                    <exon start="99742" stop="99673"/>
                    <exon start="99040" stop="98955"/>
                    <exon start="98350" stop="98261"/>
                    <exon start="96254" stop="96179"/>
                    <exon start="95410" stop="95283"/>
                    <exon start="94232" stop="94187"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELIKHSFELPSYKKYSVNRNNHVELNATSLGHGLSEMQRLQELWRSCLMCLYEAGRYHKVALLDLYLEALDPELYNSRLSNHGCDSAKDRSLLSNNDKLFKLQKAEVTNQVIRKMRDLPAAKLSQLLKSWERFTEGSMEVHEKIMELQSQMVSEDVKGHKAELTDISKRHISRRGLNVEKDACTSNDKAATLAGQMIRDSMQPIECIPFHELICFKDVDNLQSALAGDPRRRIQIDLLNFYKILKCGCCSNSGGTLSPSMHETSIMYTLAQEHGDLINLHD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="106490" PGL_stop="105117"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106490" e_stop="106305"/>
            <exon e_start="105662" e_stop="105604"/>
            <exon e_start="105507" e_stop="105337"/>
            <exon e_start="105220" e_stop="105117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.897" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.966"/>
          <exon-intron don_prob="0.833" acc_prob="0.961" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="106490" e_stop="106305" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="106304" i_stop="105663" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="105662" e_stop="105604" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105603" i_stop="105508" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="105507" e_stop="105337" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.833" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105336" i_stop="105221" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105220" e_stop="105117" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106490" stop="106305"/>
              <exon start="105662" stop="105604"/>
              <exon start="105507" stop="105412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106468" stop="106305"/>
              <exon start="105662" stop="105604"/>
              <exon start="105507" stop="105337"/>
              <exon start="105220" stop="105117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTCACTTTTCTGTTCTCACTTCTTTTCGCGCGCTCAGCAGCAGCCAATAAGCCAACAATTGCCTCTCACCGGAGCAGCAATACTCACCGGAGAAGAGATCGCCGGCGACCAGCAAGCAGTGTATCTATCAGTCTATCTTCTCAGCACCAGTAGGAAAAAACTGTGTTTCTGGCTTGCTGTCTG : AAATGTATTCACCAAATGAACATCCTCTTACAGACCCGCTTGCAGAAAACAATCTTCAG : CCATTCTTCGTGCTGCACAAGGCATCAAAGTCTTCAGAGTCTACTGCAGTAACTCCTGGAAGATCCACTAAAAGAAGACTTGACTCTTCATCAAAAGTATCATTAAGCAATGAGAACTTGAAAATGGAAGCTTTCCGATGTGTATGGTCAAAAATCGAATCCAAGATTAAG : GATGTCTTGAGGAGTATAAATGCCGGCGTGTTTGATGAGATAGGACAATGGGTTCGTGAATCTTTTAATGAAATTTGTTCGTGCAGAGGGCCTGTTGATCCATC</gDNA_template>
            <first_frame> *  F  T  F  L  F  S  L  L  F  A  R  S  A  A  A  N  K  P  T  I  A  S  H  R  S  S  N  T  H  R  R  R  D  R  R  R  P  A  S  S  V  S  I  S  L  S  S  Q  H  Q  *  E  K  T  V  F  L  A  C  C  L  :  K  C  I  H  Q  M  N  I  L  L  Q  T  R  L  Q  K  T  I  F  S :   H  S  S  C  C  T  R  H  Q  S  L  Q  S  L  L  Q  *  L  L  E  D  P  L  K  E  D  L  T  L  H  Q  K  Y  H  *  A  M  R  T  *  K  W  K  L  S  D  V  Y  G  Q  K  S  N  P  R  L  R :   M  S  *  G  V  *  M  P  A  C  L  M  R  *  D  N  G  F  V  N  L  L  M  K  F  V  R  A  E  G  L  L  I  H  </first_frame>
            <second_frame>  D  S  L  F  C  S  H  F  F  S  R  A  Q  Q  Q  P  I  S  Q  Q  L  P  L  T  G  A  A  I  L  T  G  E  E  I  A  G  D  Q  Q  A  V  Y  L  S  V  Y  L  L  S  T  S  R  K  K  L  C  F  W  L  A  V  * :   N  V  F  T  K  *  T  S  S  Y  R  P  A  C  R  K  Q  S  S   : A  I  L  R  A  A  Q  G  I  K  V  F  R  V  Y  C  S  N  S  W  K  I  H  *  K  K  T  *  L  F  I  K  S  I  I  K  Q  *  E  L  E  N  G  S  F  P  M  C  M  V  K  N  R  I  Q  D  *   : G  C  L  E  E  Y  K  C  R  R  V  *  *  D  R  T  M  G  S  *  I  F  *  *  N  L  F  V  Q  R  A  C  *  S  I </second_frame>
            <third_frame>   I  H  F  S  V  L  T  S  F  R  A  L  S  S  S  Q  *  A  N  N  C  L  S  P  E  Q  Q  Y  S  P  E  K  R  S  P  A  T  S  K  Q  C  I  Y  Q  S  I  F  S  A  P  V  G  K  N  C  V  S  G  L  L  S   : E  M  Y  S  P  N  E  H  P  L  T  D  P  L  A  E  N  N  L  Q  :  P  F  F  V  L  H  K  A  S  K  S  S  E  S  T  A  V  T  P  G  R  S  T  K  R  R  L  D  S  S  S  K  V  S  L  S  N  E  N  L  K  M  E  A  F  R  C  V  W  S  K  I  E  S  K  I  K  :  D  V  L  R  S  I  N  A  G  V  F  D  E  I  G  Q  W  V  R  E  S  F  N  E  I  C  S  C  R  G  P  V  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106437" stop="106305"/>
                    <exon start="105662" stop="105604"/>
                    <exon start="105507" stop="105337"/>
                    <exon start="105220" stop="105119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANNCLSPEQQYSPEKRSPATSKQCIYQSIFSAPVGKNCVSGLLSEMYSPNEHPLTDPLAENNLQPFFVLHKASKSSESTAVTPGRSTKRRLDSSSKVSLSNENLKMEAFRCVWSKIESKIKDVLRSINAGVFDEIGQWVRESFNEICSCRGPVDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="107997" PGL_stop="115927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107997" e_stop="108293"/>
            <exon e_start="109299" e_stop="109363"/>
            <exon e_start="109884" e_stop="109982"/>
            <exon e_start="110408" e_stop="110540"/>
            <exon e_start="111704" e_stop="111763"/>
            <exon e_start="112846" e_stop="112905"/>
            <exon e_start="113375" e_stop="113497"/>
            <exon e_start="115733" e_stop="115804"/>
            <exon e_start="115881" e_stop="115927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.808" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.777" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.571" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107997" e_stop="108293" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.808" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109299" e_stop="109363" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109884" e_stop="109982" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110408" e_stop="110540" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.861" acc_prob="0.959">
            <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111763" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.989">
            <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112846" e_stop="112905" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="112906" i_stop="113374" i_length="469"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113375" e_stop="113497" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.777" acc_prob="0.886">
            <gDNA_intron_boundary i_start="113498" i_stop="115732" i_length="2235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115733" e_stop="115804" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.571" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115805" i_stop="115880" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="115881" e_stop="115927" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107997" stop="108293"/>
              <exon start="109299" stop="109363"/>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110540"/>
              <exon start="111704" stop="111763"/>
              <exon start="112846" stop="112905"/>
              <exon start="113375" stop="113497"/>
              <exon start="115733" stop="115756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108002" stop="108293"/>
              <exon start="109299" stop="109363"/>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108058" stop="108293"/>
              <exon start="109299" stop="109363"/>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110540"/>
              <exon start="111704" stop="111763"/>
              <exon start="112846" stop="112905"/>
              <exon start="113375" stop="113497"/>
              <exon start="115733" stop="115804"/>
              <exon start="115881" stop="115927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108062" stop="108293"/>
              <exon start="109299" stop="109363"/>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110540"/>
              <exon start="111704" stop="111763"/>
              <exon start="112846" stop="112905"/>
              <exon start="113375" stop="113419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108293"/>
              <exon start="109299" stop="109347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACGCCTATCTCCCTCTTTATCCTTTTTTCCATCTTCTTCTTCTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT : GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAG : GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG : GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG : GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT : ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAG : CATATTGTTGATAGTATGAAGGACCCCAGCATTGCTGCATTTTGGTTGCTTACCTTGCCTCAGATTGTGGGTGGATTTGAATATGATGATGATGTCAAGAAGAAGATTTGGTGGCAATATAAG : GAATCTATGCGATATGATCAACTTCGAGATGTGGTGGCCAAGAGAAAACCTGGATGGGAGTATTTGCAAGAA : GCCTTGGTCTCTATTGATCCTGCCCGAGCAAGAGAAGATCCTATTAT</gDNA_template>
            <first_frame> N  T  P  I  S  L  F  I  L  F  S  I  F  F  F  F  F  N  *  L  N  V  *  A  M  S  R  G  T  D  R  L  L  K  N  L  K  Q  F  T  D  L  Q  Y  K  Y  F  S  S  R  Y  G  Q  Q  L  I  D  I  F  E  F  P  I  K  L  V  L  S  P  I  T  L  A  Y  D  I  A  G  S  A  P  R  G  F  G  V  P  E  F  I  S  K  L  S  Y  S  T  I  F  :  V  V  A  T  L  G  T  Y  D  I  A  M  E  L  G  K  K  V  I  S  Q  R :   D  C  R  T  C  C  G  W  Q  A  L  Q  C  T  M  C  K  G  S  G  K  V  H  Y  Q  V  K  N  Y  T  L  K  R :   G  E  K  A  T  A  E  S  I  A  D  A  I  A  D  N  R  A  E  L  V  H  L  P  S  T  V  D  L  H  L  P  L  P  S  K  E  C  P  S  C  D  G  S  :  G  V  M  K  C  P  E  C  K  D  K  L  Q  I  K  I  S  A  D  D  :  I  M  E  P  P  W  K  A  Y  N  I  M  R  K  M  D  Y  P  Y  E  :  H  I  V  D  S  M  K  D  P  S  I  A  A  F  W  L  L  T  L  P  Q  I  V  G  G  F  E  Y  D  D  D  V  K  K  K  I  W  W  Q  Y  K  :  E  S  M  R  Y  D  Q  L  R  D  V  V  A  K  R  K  P  G  W  E  Y  L  Q  E  :  A  L  V  S  I  D  P  A  R  A  R  E  D  P  I   </first_frame>
            <second_frame>  I  R  L  S  P  S  L  S  F  F  P  S  S  S  S  S  S  T  S  *  M  F  E  Q  C  L  E  A  L  I  A  Y  *  R  I  *  S  N  S  L  T  F  N  T  S  T  S  V  A  A  M  D  S  N  S  L  T  F  S  N  F  Q  *  S  L  F  F  H  L  L  H  L  H  M  T  L  P  A  L  L  R  E  V  S  V  Y  L  N  S  S  L  S  S  L  I  R  P  S  L :   W  *  L  L  W  V  L  M  T  L  Q  W  S  S  E  R  R  *  S  A  R   : G  T  A  G  H  A  V  G  G  R  R  C  S  A  Q  C  A  K  D  Q  A  K  C  I  T  K  *  R  T  T  H  *  K   : G  E  K  K  P  Q  L  N  P  L  L  M  R  *  L  I  T  E  L  S  W  C  I  F  L  P  Q  W  T  F  T  C  H  C  H  L  K  N  V  P  V  V  M  D  R :   V  *  *  N  A  R  N  A  K  T  N  C  R  *  R  Y  L  Q  M  I :   L  W  S  L  L  G  K  L  I  I  S  *  G  R  W  I  I  L  T  S :   I  L  L  I  V  *  R  T  P  A  L  L  H  F  G  C  L  P  C  L  R  L  W  V  D  L  N  M  M  M  M  S  R  R  R  F  G  G  N  I  R :   N  L  C  D  M  I  N  F  E  M  W  W  P  R  E  N  L  D  G  S  I  C  K  K :   P  W  S  L  L  I  L  P  E  Q  E  K  I  L  L  </second_frame>
            <third_frame>   Y  A  Y  L  P  L  Y  P  F  F  H  L  L  L  L  L  Q  L  V  E  C  L  S  N  V  S  R  H  *  S  L  T  E  E  F  E  A  I  H  *  P  S  I  Q  V  L  Q  *  P  L  W  T  A  T  H  *  H  F  R  I  S  N  K  A  C  S  F  T  Y  Y  T  C  I  *  H  C  R  L  C  S  E  R  F  R  C  T  *  I  H  L  *  A  L  L  F  D  H  L   : C  G  S  Y  S  G  Y  L  *  H  C  N  G  A  R  K  E  G  D  Q  P  E  :  G  L  P  D  M  L  W  V  A  G  V  A  V  H  N  V  Q  R  I  R  Q  S  A  L  P  S  E  E  L  H  I  E  K  :  G  R  K  S  H  S  *  I  H  C  *  C  D  S  *  *  Q  S  *  V  G  A  S  S  F  H  S  G  P  S  L  A  T  A  I  *  R  M  S  Q  L  *  W  I   : G  C  D  E  M  P  G  M  Q  R  Q  T  A  D  K  D  I  C  R  *   : Y  Y  G  A  S  L  E  S  L  *  Y  H  E  E  D  G  L  S  L  R   : A  Y  C  *  *  Y  E  G  P  Q  H  C  C  I  L  V  A  Y  L  A  S  D  C  G  W  I  *  I  *  *  *  C  Q  E  E  D  L  V  A  I  *   : G  I  Y  A  I  *  S  T  S  R  C  G  G  Q  E  K  T  W  M  G  V  F  A  R   : S  L  G  L  Y  *  S  C  P  S  K  R  R  S  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108066" stop="108293"/>
                    <exon start="109299" stop="109363"/>
                    <exon start="109884" stop="109982"/>
                    <exon start="110408" stop="110540"/>
                    <exon start="111704" stop="111763"/>
                    <exon start="112846" stop="112905"/>
                    <exon start="113375" stop="113497"/>
                    <exon start="115733" stop="115804"/>
                    <exon start="115881" stop="115925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMSRGTDRLLKNLKQFTDLQYKYFSSRYGQQLIDIFEFPIKLVLSPITLAYDIAGSAPRGFGVPEFISKLSYSTIFVVATLGTYDIAMELGKKVISQRDCRTCCGWQALQCTMCKGSGKVHYQVKNYTLKRGEKATAESIADAIADNRAELVHLPSTVDLHLPLPSKECPSCDGSGVMKCPECKDKLQIKISADDIMEPPWKAYNIMRKMDYPYEHIVDSMKDPSIAAFWLLTLPQIVGGFEYDDDVKKKIWWQYKESMRYDQLRDVVAKRKPGWEYLQEALVSIDPARAREDPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108002" e_stop="108293"/>
            <exon e_start="109299" e_stop="109363"/>
            <exon e_start="109884" e_stop="109982"/>
            <exon e_start="110408" e_stop="110540"/>
            <exon e_start="111704" e_stop="111763"/>
            <exon e_start="112846" e_stop="113211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.808" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="108002" e_stop="108293" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.808" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108294" i_stop="109298" i_length="1005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109299" e_stop="109363" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="109364" i_stop="109883" i_length="520"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109884" e_stop="109982" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109983" i_stop="110407" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110408" e_stop="110540" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.861" acc_prob="0.959">
            <gDNA_intron_boundary i_start="110541" i_stop="111703" i_length="1163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111763" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.989">
            <gDNA_intron_boundary i_start="111764" i_stop="112845" i_length="1082"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112846" e_stop="113211" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108002" stop="108293"/>
              <exon start="109299" stop="109363"/>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108293"/>
              <exon start="109299" stop="109347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110540"/>
              <exon start="111704" stop="111763"/>
              <exon start="112846" stop="113211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109884" stop="109982"/>
              <exon start="110408" stop="110540"/>
              <exon start="111704" stop="111763"/>
              <exon start="112846" stop="113012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTATCTCCCTCTTTATCCTTTTTTCCATCTTCTTCTTCTTCTTCAACTAGTTGAATGTTTGAGCAATGTCTCGAGGCACTGATCGCTTACTGAAGAATTTGAAGCAATTCACTGACCTTCAATACAAGTACTTCAGTAGCCGCTATGGACAGCAACTCATTGACATTTTCGAATTTCCAATAAAGCTTGTTCTTTCACCTATTACACTTGCATATGACATTGCCGGCTCTGCTCCGAGAGGTTTCGGTGTACCTGAATTCATCTCTAAGCTCTCTTATTCGACCATCTTT : GTGGTAGCTACTCTGGGTACTTATGACATTGCAATGGAGCTCGGAAAGAAGGTGATCAGCCAGAG : GGACTGCCGGACATGCTGTGGGTGGCAGGCGTTGCAGTGCACAATGTGCAAAGGATCAGGCAAAGTGCATTACCAAGTGAAGAACTACACATTGAAAAG : GGGAGAAAAAGCCACAGCTGAATCCATTGCTGATGCGATAGCTGATAACAGAGCTGAGTTGGTGCATCTTCCTTCCACAGTGGACCTTCACTTGCCACTGCCATCTAAAGAATGTCCCAGTTGTGATGGATCG : GGTGTGATGAAATGCCCGGAATGCAAAGACAAACTGCAGATAAAGATATCTGCAGATGAT : ATTATGGAGCCTCCTTGGAAAGCTTATAATATCATGAGGAAGATGGATTATCCTTACGAGGCTAGTGCTTTGTCATCCCTGTTTCTGTTTTGTAACAATTAATACTGCTTACTGTAAATGTTCTTTTTTTCGCTGCATCTCATCCATCATTGCTTGATTTACATTTTTTTTGTTCAATATCTCAAAGGATGAGAAGAAAGATTCTCATGCTGTTGGGAAGTGGGAAAGGATTTTCAAATGAAGAAGAATTGATTTCCTTCCTATTTTTTATGGAGAAAAAGGGTTCAAAGGAAATATGTTTCTTCTTTCTGGTTACTTTTCCTTTTATATGACAAGCTAAAGTTGGGAGAGAAAATTCTCATGTTC</gDNA_template>
            <first_frame> A  Y  L  P  L  Y  P  F  F  H  L  L  L  L  L  Q  L  V  E  C  L  S  N  V  S  R  H  *  S  L  T  E  E  F  E  A  I  H  *  P  S  I  Q  V  L  Q  *  P  L  W  T  A  T  H  *  H  F  R  I  S  N  K  A  C  S  F  T  Y  Y  T  C  I  *  H  C  R  L  C  S  E  R  F  R  C  T  *  I  H  L  *  A  L  L  F  D  H  L   : C  G  S  Y  S  G  Y  L  *  H  C  N  G  A  R  K  E  G  D  Q  P  E  :  G  L  P  D  M  L  W  V  A  G  V  A  V  H  N  V  Q  R  I  R  Q  S  A  L  P  S  E  E  L  H  I  E  K  :  G  R  K  S  H  S  *  I  H  C  *  C  D  S  *  *  Q  S  *  V  G  A  S  S  F  H  S  G  P  S  L  A  T  A  I  *  R  M  S  Q  L  *  W  I   : G  C  D  E  M  P  G  M  Q  R  Q  T  A  D  K  D  I  C  R  *   : Y  Y  G  A  S  L  E  S  L  *  Y  H  E  E  D  G  L  S  L  R  G  *  C  F  V  I  P  V  S  V  L  *  Q  L  I  L  L  T  V  N  V  L  F  F  A  A  S  H  P  S  L  L  D  L  H  F  F  C  S  I  S  Q  R  M  R  R  K  I  L  M  L  L  G  S  G  K  G  F  S  N  E  E  E  L  I  S  F  L  F  F  M  E  K  K  G  S  K  E  I  C  F  F  F  L  V  T  F  P  F  I  *  Q  A  K  V  G  R  E  N  S  H  V  </first_frame>
            <second_frame>  P  I  S  L  F  I  L  F  S  I  F  F  F  F  F  N  *  L  N  V  *  A  M  S  R  G  T  D  R  L  L  K  N  L  K  Q  F  T  D  L  Q  Y  K  Y  F  S  S  R  Y  G  Q  Q  L  I  D  I  F  E  F  P  I  K  L  V  L  S  P  I  T  L  A  Y  D  I  A  G  S  A  P  R  G  F  G  V  P  E  F  I  S  K  L  S  Y  S  T  I  F  :  V  V  A  T  L  G  T  Y  D  I  A  M  E  L  G  K  K  V  I  S  Q  R :   D  C  R  T  C  C  G  W  Q  A  L  Q  C  T  M  C  K  G  S  G  K  V  H  Y  Q  V  K  N  Y  T  L  K  R :   G  E  K  A  T  A  E  S  I  A  D  A  I  A  D  N  R  A  E  L  V  H  L  P  S  T  V  D  L  H  L  P  L  P  S  K  E  C  P  S  C  D  G  S  :  G  V  M  K  C  P  E  C  K  D  K  L  Q  I  K  I  S  A  D  D  :  I  M  E  P  P  W  K  A  Y  N  I  M  R  K  M  D  Y  P  Y  E  A  S  A  L  S  S  L  F  L  F  C  N  N  *  Y  C  L  L  *  M  F  F  F  S  L  H  L  I  H  H  C  L  I  Y  I  F  F  V  Q  Y  L  K  G  *  E  E  R  F  S  C  C  W  E  V  G  K  D  F  Q  M  K  K  N  *  F  P  S  Y  F  L  W  R  K  R  V  Q  R  K  Y  V  S  S  F  W  L  L  F  L  L  Y  D  K  L  K  L  G  E  K  I  L  M  F </second_frame>
            <third_frame>   L  S  P  S  L  S  F  F  P  S  S  S  S  S  S  T  S  *  M  F  E  Q  C  L  E  A  L  I  A  Y  *  R  I  *  S  N  S  L  T  F  N  T  S  T  S  V  A  A  M  D  S  N  S  L  T  F  S  N  F  Q  *  S  L  F  F  H  L  L  H  L  H  M  T  L  P  A  L  L  R  E  V  S  V  Y  L  N  S  S  L  S  S  L  I  R  P  S  L :   W  *  L  L  W  V  L  M  T  L  Q  W  S  S  E  R  R  *  S  A  R   : G  T  A  G  H  A  V  G  G  R  R  C  S  A  Q  C  A  K  D  Q  A  K  C  I  T  K  *  R  T  T  H  *  K   : G  E  K  K  P  Q  L  N  P  L  L  M  R  *  L  I  T  E  L  S  W  C  I  F  L  P  Q  W  T  F  T  C  H  C  H  L  K  N  V  P  V  V  M  D  R :   V  *  *  N  A  R  N  A  K  T  N  C  R  *  R  Y  L  Q  M  I :   L  W  S  L  L  G  K  L  I  I  S  *  G  R  W  I  I  L  T  R  L  V  L  C  H  P  C  F  C  F  V  T  I  N  T  A  Y  C  K  C  S  F  F  R  C  I  S  S  I  I  A  *  F  T  F  F  L  F  N  I  S  K  D  E  K  K  D  S  H  A  V  G  K  W  E  R  I  F  K  *  R  R  I  D  F  L  P  I  F  Y  G  E  K  G  F  K  G  N  M  F  L  L  S  G  Y  F  S  F  Y  M  T  S  *  S  W  E  R  K  F  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108066" stop="108293"/>
                    <exon start="109299" stop="109363"/>
                    <exon start="109884" stop="109982"/>
                    <exon start="110408" stop="110540"/>
                    <exon start="111704" stop="111763"/>
                    <exon start="112846" stop="112947"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMSRGTDRLLKNLKQFTDLQYKYFSSRYGQQLIDIFEFPIKLVLSPITLAYDIAGSAPRGFGVPEFISKLSYSTIFVVATLGTYDIAMELGKKVISQRDCRTCCGWQALQCTMCKGSGKVHYQVKNYTLKRGEKATAESIADAIADNRAELVHLPSTVDLHLPLPSKECPSCDGSGVMKCPECKDKLQIKISADDIMEPPWKAYNIMRKMDYPYEASALSSLFLFCNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112941" stop="113177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLILLTVNVLFFAASHPSLLDLHFFCSISQRMRRKILMLLGSGKGFSNEEELISFLFFMEKKGSKEICFFFLVTFPFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="115934" PGL_stop="119582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115934" e_stop="116018"/>
            <exon e_start="116363" e_stop="116518"/>
            <exon e_start="117972" e_stop="118079"/>
            <exon e_start="119477" e_stop="119582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.918"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="0.972"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="115934" e_stop="116018" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="116019" i_stop="116362" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116363" e_stop="116518" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116519" i_stop="117971" i_length="1453"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="117972" e_stop="118079" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118080" i_stop="119476" i_length="1397"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="119477" e_stop="119582" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115934" stop="116018"/>
              <exon start="116363" stop="116518"/>
              <exon start="117972" stop="118079"/>
              <exon start="119477" stop="119582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGTTCCTTACTTCAAGGCCAAGAAAACTCTGGAGGCAGAAGTCATGAAGCTTGACCCTCCGCCGCGTCCTCAAAATTGGGGG : GAGTTGAACCTTCCATTAAACGCATCTTCTTGGAGTGAAAAGGACCTCAAAGACCCAAAAAAGCTCTATGAGATGACAGTTCTTCTTAATGCACAGAGAGAAATTTCTGAAAAGATGCTGGATGCCCAGTGGGAAGCGAAATGGAGAGAAGAAAAG : CTTAACAAAATGTTGGAGGAGAAGGTACGACCATACATTCAGAATATCGACAATACTGTACTTCCTCAACCTATTGTTATGGAGTCAGAAAGGAATCAGGATCAAAAG : AGAAAGCATGGACGAAGGAGATGGTGGTTATTTTGATTGTATTTGCTTAGCCAGTACAATTGCTACTAGACTCATGAGAAATCTAATGCTTATAGCTACTTTTTTT</gDNA_template>
            <first_frame> K  R  S  L  L  Q  G  Q  E  N  S  G  G  R  S  H  E  A  *  P  S  A  A  S  S  K  L  G   : G  V  E  P  S  I  K  R  I  F  L  E  *  K  G  P  Q  R  P  K  K  A  L  *  D  D  S  S  S  *  C  T  E  R  N  F  *  K  D  A  G  C  P  V  G  S  E  M  E  R  R  K   : A  *  Q  N  V  G  G  E  G  T  T  I  H  S  E  Y  R  Q  Y  C  T  S  S  T  Y  C  Y  G  V  R  K  E  S  G  S  K   : E  K  A  W  T  K  E  M  V  V  I  L  I  V  F  A  *  P  V  Q  L  L  L  D  S  *  E  I  *  C  L  *  L  L  F   </first_frame>
            <second_frame>  N  V  P  Y  F  K  A  K  K  T  L  E  A  E  V  M  K  L  D  P  P  P  R  P  Q  N  W  G  :  E  L  N  L  P  L  N  A  S  S  W  S  E  K  D  L  K  D  P  K  K  L  Y  E  M  T  V  L  L  N  A  Q  R  E  I  S  E  K  M  L  D  A  Q  W  E  A  K  W  R  E  E  K  :  L  N  K  M  L  E  E  K  V  R  P  Y  I  Q  N  I  D  N  T  V  L  P  Q  P  I  V  M  E  S  E  R  N  Q  D  Q  K  :  R  K  H  G  R  R  R  W  W  L  F  *  L  Y  L  L  S  Q  Y  N  C  Y  *  T  H  E  K  S  N  A  Y  S  Y  F  F  </second_frame>
            <third_frame>   T  F  L  T  S  R  P  R  K  L  W  R  Q  K  S  *  S  L  T  L  R  R  V  L  K  I  G  G :   S  *  T  F  H  *  T  H  L  L  G  V  K  R  T  S  K  T  Q  K  S  S  M  R  *  Q  F  F  L  M  H  R  E  K  F  L  K  R  C  W  M  P  S  G  K  R  N  G  E  K  K  S :   L  T  K  C  W  R  R  R  Y  D  H  T  F  R  I  S  T  I  L  Y  F  L  N  L  L  L  W  S  Q  K  G  I  R  I  K  R :   E  S  M  D  E  G  D  G  G  Y  F  D  C  I  C  L  A  S  T  I  A  T  R  L  M  R  N  L  M  L  I  A  T  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115935" stop="116018"/>
                    <exon start="116363" stop="116518"/>
                    <exon start="117972" stop="118079"/>
                    <exon start="119477" stop="119512"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPYFKAKKTLEAEVMKLDPPPRPQNWGELNLPLNASSWSEKDLKDPKKLYEMTVLLNAQREISEKMLDAQWEAKWREEKLNKMLEEKVRPYIQNIDNTVLPQPIVMESERNQDQKRKHGRRRWWLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116439" stop="116518"/>
                    <exon start="117972" stop="118079"/>
                    <exon start="119477" stop="119582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFFLMHREKFLKRCWMPSGKRNGEKKSLTKCWRRRYDHTFRISTILYFLNLLLWSQKGIRIKRESMDEGDGGYFDCICLASTIATRLMRNLMLIATFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="121021" PGL_stop="120466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121021" e_stop="120466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="121021" e_stop="120466" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121021" stop="120466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121021" stop="120466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121021" stop="120466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121021" stop="120470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121021" stop="120651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121020" stop="120620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120862" stop="120473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATTGGACATGTTGGAGACATGTTGTTTGAGGATGAAGAGATGATGATGCCATCCGAATCAGCCCGTAGAACACTCGATGAGCGCGATCACATCGGTTATAGAGCGTTGAGGGCTAATAATATTCCATGCGATCAACGCGGTGCGTCTTATTATGAATGTAATCGTATGTCAAAAATTAATCCTTATAGACGTGGTTGTCAAAGAATTACTGGTTGTGGACGCACAAATAGTTGAAATTAATTAACGTATAAAATGCATGTATGGAATATTAATATTAATATTTCATGCATGCATGCGTTAACGCTAAAAATATATTTAGAAATACATGAGTTGGTAACTTCTTTTTTTTGATAAACTACTATATATATTTTTGTTTTTACTAAATTCGTAGAGAATGATATATTAAGAAGATTACCAACAACAAGGAAATAATTAACTTTTTACAAGTTTTTTTATTTCCCTTTCTGTTGTTTAAACTATACTGTATACCATTATTGAATATGATTTTTGTAAATTTAAGTATATGGTGAAATAAATTACAGATTGTCATTT</gDNA_template>
            <first_frame> Q  H  W  T  C  W  R  H  V  V  *  G  *  R  D  D  D  A  I  R  I  S  P  *  N  T  R  *  A  R  S  H  R  L  *  S  V  E  G  *  *  Y  S  M  R  S  T  R  C  V  L  L  *  M  *  S  Y  V  K  N  *  S  L  *  T  W  L  S  K  N  Y  W  L  W  T  H  K  *  L  K  L  I  N  V  *  N  A  C  M  E  Y  *  Y  *  Y  F  M  H  A  C  V  N  A  K  N  I  F  R  N  T  *  V  G  N  F  F  F  L  I  N  Y  Y  I  Y  F  C  F  Y  *  I  R  R  E  *  Y  I  K  K  I  T  N  N  K  E  I  I  N  F  L  Q  V  F  L  F  P  F  L  L  F  K  L  Y  C  I  P  L  L  N  M  I  F  V  N  L  S  I  W  *  N  K  L  Q  I  V  I  </first_frame>
            <second_frame>  N  I  G  H  V  G  D  M  L  F  E  D  E  E  M  M  M  P  S  E  S  A  R  R  T  L  D  E  R  D  H  I  G  Y  R  A  L  R  A  N  N  I  P  C  D  Q  R  G  A  S  Y  Y  E  C  N  R  M  S  K  I  N  P  Y  R  R  G  C  Q  R  I  T  G  C  G  R  T  N  S  *  N  *  L  T  Y  K  M  H  V  W  N  I  N  I  N  I  S  C  M  H  A  L  T  L  K  I  Y  L  E  I  H  E  L  V  T  S  F  F  *  *  T  T  I  Y  I  F  V  F  T  K  F  V  E  N  D  I  L  R  R  L  P  T  T  R  K  *  L  T  F  Y  K  F  F  Y  F  P  F  C  C  L  N  Y  T  V  Y  H  Y  *  I  *  F  L  *  I  *  V  Y  G  E  I  N  Y  R  L  S  F </second_frame>
            <third_frame>   T  L  D  M  L  E  T  C  C  L  R  M  K  R  *  *  C  H  P  N  Q  P  V  E  H  S  M  S  A  I  T  S  V  I  E  R  *  G  L  I  I  F  H  A  I  N  A  V  R  L  I  M  N  V  I  V  C  Q  K  L  I  L  I  D  V  V  V  K  E  L  L  V  V  D  A  Q  I  V  E  I  N  *  R  I  K  C  M  Y  G  I  L  I  L  I  F  H  A  C  M  R  *  R  *  K  Y  I  *  K  Y  M  S  W  *  L  L  F  F  D  K  L  L  Y  I  F  L  F  L  L  N  S  *  R  M  I  Y  *  E  D  Y  Q  Q  Q  G  N  N  *  L  F  T  S  F  F  I  S  L  S  V  V  *  T  I  L  Y  T  I  I  E  Y  D  F  C  K  F  K  Y  M  V  K  *  I  T  D  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121020" stop="120784"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIGHVGDMLFEDEEMMMPSESARRTLDERDHIGYRALRANNIPCDQRGASYYECNRMSKINPYRRGCQRITGCGRTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="120477" PGL_stop="120849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120477" e_stop="120849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="120477" e_stop="120849" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120477" stop="120849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAATTTATTTCACCATATACTTAAATTTACAAAAATCATATTCAATAATGGTATACAGTATAGTTTAAACAACAGAAAGGGAAATAAAAAAACTTGTAAAAAGTTAATTATTTCCTTGTTGTTGGTAATCTTCTTAATATATCATTCTCTACGAATTTAGTAAAAACAAAAATATATATAGTAGTTTATCAAAAAAAAGAAGTTACCAACTCATGTATTTCTAAATATATTTTTAGCGTTAACGCATGCATGCATGAAATATTAATATTAATATTCCATACATGCATTTTATACGTTAATTAATTTCAACTATTTGTGCGTCCACAACCAGTAATTCTTTGACAACCACGTCTATAAGGATTAATTTTTGA</gDNA_template>
            <first_frame> C  N  L  F  H  H  I  L  K  F  T  K  I  I  F  N  N  G  I  Q  Y  S  L  N  N  R  K  G  N  K  K  T  C  K  K  L  I  I  S  L  L  L  V  I  F  L  I  Y  H  S  L  R  I  *  *  K  Q  K  Y  I  *  *  F  I  K  K  K  K  L  P  T  H  V  F  L  N  I  F  L  A  L  T  H  A  C  M  K  Y  *  Y  *  Y  S  I  H  A  F  Y  T  L  I  N  F  N  Y  L  C  V  H  N  Q  *  F  F  D  N  H  V  Y  K  D  *  F  L  </first_frame>
            <second_frame>  V  I  Y  F  T  I  Y  L  N  L  Q  K  S  Y  S  I  M  V  Y  S  I  V  *  T  T  E  R  E  I  K  K  L  V  K  S  *  L  F  P  C  C  W  *  S  S  *  Y  I  I  L  Y  E  F  S  K  N  K  N  I  Y  S  S  L  S  K  K  R  S  Y  Q  L  M  Y  F  *  I  Y  F  *  R  *  R  M  H  A  *  N  I  N  I  N  I  P  Y  M  H  F  I  R  *  L  I  S  T  I  C  A  S  T  T  S  N  S  L  T  T  T  S  I  R  I  N  F  * </second_frame>
            <third_frame>   *  F  I  S  P  Y  T  *  I  Y  K  N  H  I  Q  *  W  Y  T  V  *  F  K  Q  Q  K  G  K  *  K  N  L  *  K  V  N  Y  F  L  V  V  G  N  L  L  N  I  S  F  S  T  N  L  V  K  T  K  I  Y  I  V  V  Y  Q  K  K  E  V  T  N  S  C  I  S  K  Y  I  F  S  V  N  A  C  M  H  E  I  L  I  L  I  F  H  T  C  I  L  Y  V  N  *  F  Q  L  F  V  R  P  Q  P  V  I  L  *  Q  P  R  L  *  G  L  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120578" stop="120781"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVNYFLVVGNLLNISFSTNLVKTKIYIVVYQKKEVTNSCISKYIFSVNACMHEILILIFHTCILYVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="132720" PGL_stop="123490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132694" e_stop="132389"/>
            <exon e_start="132264" e_stop="131995"/>
            <exon e_start="131873" e_stop="131745"/>
            <exon e_start="131643" e_stop="130963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132694" e_stop="132389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132264" e_stop="131995" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.914">
            <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131873" e_stop="131745" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="131643" e_stop="130963" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132694" stop="132389"/>
              <exon start="132264" stop="132075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132682" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132681" stop="132389"/>
              <exon start="132264" stop="132100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132674" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132673" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132664" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132663" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132635" stop="132389"/>
              <exon start="132264" stop="132019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132577" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132552" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132054" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132023" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132018" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131858" stop="131745"/>
              <exon start="131643" stop="130963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131745"/>
              <exon start="131643" stop="131302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131788" stop="131745"/>
              <exon start="131643" stop="131111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131782" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131781" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131634" stop="131153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131525" stop="131052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131424" stop="131070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131350" stop="131092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC : TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG : GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG : GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTT</gDNA_template>
            <first_frame> R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  :  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  :  A  Q  L  R  Q  L  L  R  L  K  D  R  V  H  R  R  H  L  Q  L  T  L  R  R  D  H  L  N  R  V  H  R  H  L  M  G  H  R  Y  L  L  L  Q  :  V  N  H  Q  P  H  H  L  H  L  P  V  Q  P  H  L  H  H  L  L  R  P  *  L  R  Q  C  L  R  *  Q  M  D  R  Q  L  V  H  Q  V  L  L  H  L  *  Q  A  D  H  R  Q  E  A  V  L  H  R  R  Q  A  D  H  L  E  A  L  L  H  R  R  Q  T  D  Q  Q  *  V  C  H  R  D  H  R  Q  E  D  H  W  Q  A  D  H  R  R  E  H  R  E  V  V  L  *  V  P  A  A  A  I  L  R  R  T  S  I  R  Q  L  A  H  Q  K  T  Q  I  H  L  Q  *  R  H  L  L  H  Q  L  Y  L  C  Q  P  F  H  S  F  *  L  *  L  W  Q  N  L  L  F  Y  L  R  V  K  L  L  D  I  I  F  N  L  C  F  F  F  F  F  T  V  F  C  F  *  F  L  E  *  F  G  D  Y  W  R  V  F  R  Y  T  I  D  V  F  N  F  Y  F  F  A  F  N  F  C  G  *  D  L  K  F  E  F  M  Y  T  S  L  I  L  V  F  V  F </first_frame>
            <second_frame>  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S :   V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R :   L  N  S  G  S  C  S  V  *  R  I  G  Y  T  V  G  T  F  S  *  R  S  G  G  I  I  *  T  G  C  I  V  T  *  W  G  T  G  I  Y  S  C  R :   *  I  T  N  L  I  T  Y  T  F  R  F  N  R  I  S  T  I  S  C  D  R  N  S  G  N  V  S  G  S  K  W  T  V  N  *  Y  T  R  F  F  F  T  C  S  R  R  T  I  V  R  K  R  Y  C  T  V  G  R  R  T  I  W  K  R  Y  C  T  G  G  R  R  T  N  S  K  Y  V  T  G  T  I  G  R  R  T  I  G  R  R  T  I  G  G  S  T  G  K  *  C  F  R  S  R  R  Q  Q  Y  S  G  G  H  Q  Y  A  S  W  R  T  R  K  P  K  F  I  C  S  E  G  I  Y  S  I  S  C  T  C  V  S  R  F  T  R  F  N  C  D  F  G  R  I  Y  Y  F  T  L  G  *  N  Y  *  I  L  Y  L  I  C  V  F  S  F  F  L  L  Y  F  V  F  N  F  L  N  N  S  E  I  I  G  V  F  L  D  I  Q  *  M  Y  L  I  F  I  F  L  L  L  I  F  V  G  E  T  *  N  L  N  L  C  I  P  V  *  F  W  F  L  F   </second_frame>
            <third_frame>   T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V   : L  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G   : G  S  T  P  A  A  A  P  S  K  G  S  G  T  P  S  A  P  S  A  N  A  P  A  G  S  S  K  P  G  A  S  S  P  N  G  A  P  V  S  T  P  A   : G  K  S  P  T  S  S  P  T  P  S  G  S  T  A  S  P  P  S  P  A  T  V  T  P  A  M  S  P  V  A  N  G  P  S  T  S  T  P  G  S  S  S  P  V  A  G  G  P  S  S  G  S  G  I  A  P  S  A  G  G  P  S  G  S  A  I  A  P  A  A  D  G  P  T  V  S  M  S  P  G  P  S  A  G  G  P  L  A  G  G  P  S  E  G  A  P  G  S  S  A  L  G  P  G  G  S  N  T  P  A  D  I  N  T  P  A  G  A  P  E  N  P  N  S  F  A  V  K  A  F  T  P  S  V  V  L  V  S  A  V  S  L  V  L  T  V  T  L  A  E  F  I  I  L  P  *  G  K  I  I  R  Y  Y  I  *  F  V  F  F  L  F  F  Y  C  I  L  F  L  I  S  *  I  I  R  R  L  L  A  C  F  *  I  Y  N  R  C  I  *  F  L  F  F  C  F  *  F  L  W  V  R  L  K  I  *  I  Y  V  Y  Q  F  N  S  G  F  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132389"/>
                    <exon start="132264" stop="131995"/>
                    <exon start="131873" stop="131745"/>
                    <exon start="131643" stop="131174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVLFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGSTPAAAPSKGSGTPSAPSANAPAGSSKPGASSPNGAPVSTPAGKSPTSSPTPSGSTASPPSPATVTPAMSPVANGPSTSTPGSSSPVAGGPSSGSGIAPSAGGPSGSAIAPAADGPTVSMSPGPSAGGPLAGGPSEGAPGSSALGPGGSNTPADINTPAGAPENPNSFAVKAFTPSVVLVSAVSLVLTVTLAEFIILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="132694" e_stop="132389"/>
            <exon e_start="132264" e_stop="131995"/>
            <exon e_start="131873" e_stop="131745"/>
            <exon e_start="131643" e_stop="131028"/>
            <exon e_start="130641" e_stop="130622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132694" e_stop="132389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132264" e_stop="131995" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.914">
            <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131873" e_stop="131745" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="131643" e_stop="131028" e_length="616"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131027" i_stop="130642" i_length="386"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="130641" e_stop="130622" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132694" stop="132389"/>
              <exon start="132264" stop="132075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132682" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132681" stop="132389"/>
              <exon start="132264" stop="132100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132674" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132673" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132664" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132663" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132635" stop="132389"/>
              <exon start="132264" stop="132019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132577" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132552" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132054" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132023" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132018" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131745"/>
              <exon start="131643" stop="131302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131788" stop="131745"/>
              <exon start="131643" stop="131111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131782" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131781" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131634" stop="131153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131525" stop="131052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131424" stop="131070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131420" stop="131028"/>
              <exon start="130641" stop="130622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287851" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131350" stop="131092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC : TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG : GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG : GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTA : AAAAAAAATAAAAAAAATGA</gDNA_template>
            <first_frame> R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  :  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  :  A  Q  L  R  Q  L  L  R  L  K  D  R  V  H  R  R  H  L  Q  L  T  L  R  R  D  H  L  N  R  V  H  R  H  L  M  G  H  R  Y  L  L  L  Q  :  V  N  H  Q  P  H  H  L  H  L  P  V  Q  P  H  L  H  H  L  L  R  P  *  L  R  Q  C  L  R  *  Q  M  D  R  Q  L  V  H  Q  V  L  L  H  L  *  Q  A  D  H  R  Q  E  A  V  L  H  R  R  Q  A  D  H  L  E  A  L  L  H  R  R  Q  T  D  Q  Q  *  V  C  H  R  D  H  R  Q  E  D  H  W  Q  A  D  H  R  R  E  H  R  E  V  V  L  *  V  P  A  A  A  I  L  R  R  T  S  I  R  Q  L  A  H  Q  K  T  Q  I  H  L  Q  *  R  H  L  L  H  Q  L  Y  L  C  Q  P  F  H  S  F  *  L  *  L  W  Q  N  L  L  F  Y  L  R  V  K  L  L  D  I  I  F  N  L  C  F  F  F  F  F  T  V  F  C  F  *  F  L  E  *  F  G  D  Y  W  R  V  F  R  Y  T  I  D  V  F  N  F  Y  F  F  A  F   : K  K  K  *  K  K  * </first_frame>
            <second_frame>  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S :   V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R :   L  N  S  G  S  C  S  V  *  R  I  G  Y  T  V  G  T  F  S  *  R  S  G  G  I  I  *  T  G  C  I  V  T  *  W  G  T  G  I  Y  S  C  R :   *  I  T  N  L  I  T  Y  T  F  R  F  N  R  I  S  T  I  S  C  D  R  N  S  G  N  V  S  G  S  K  W  T  V  N  *  Y  T  R  F  F  F  T  C  S  R  R  T  I  V  R  K  R  Y  C  T  V  G  R  R  T  I  W  K  R  Y  C  T  G  G  R  R  T  N  S  K  Y  V  T  G  T  I  G  R  R  T  I  G  R  R  T  I  G  G  S  T  G  K  *  C  F  R  S  R  R  Q  Q  Y  S  G  G  H  Q  Y  A  S  W  R  T  R  K  P  K  F  I  C  S  E  G  I  Y  S  I  S  C  T  C  V  S  R  F  T  R  F  N  C  D  F  G  R  I  Y  Y  F  T  L  G  *  N  Y  *  I  L  Y  L  I  C  V  F  S  F  F  L  L  Y  F  V  F  N  F  L  N  N  S  E  I  I  G  V  F  L  D  I  Q  *  M  Y  L  I  F  I  F  L  L  L  :  K  K  N  K  K  N   </second_frame>
            <third_frame>   T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V   : L  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G   : G  S  T  P  A  A  A  P  S  K  G  S  G  T  P  S  A  P  S  A  N  A  P  A  G  S  S  K  P  G  A  S  S  P  N  G  A  P  V  S  T  P  A   : G  K  S  P  T  S  S  P  T  P  S  G  S  T  A  S  P  P  S  P  A  T  V  T  P  A  M  S  P  V  A  N  G  P  S  T  S  T  P  G  S  S  S  P  V  A  G  G  P  S  S  G  S  G  I  A  P  S  A  G  G  P  S  G  S  A  I  A  P  A  A  D  G  P  T  V  S  M  S  P  G  P  S  A  G  G  P  L  A  G  G  P  S  E  G  A  P  G  S  S  A  L  G  P  G  G  S  N  T  P  A  D  I  N  T  P  A  G  A  P  E  N  P  N  S  F  A  V  K  A  F  T  P  S  V  V  L  V  S  A  V  S  L  V  L  T  V  T  L  A  E  F  I  I  L  P  *  G  K  I  I  R  Y  Y  I  *  F  V  F  F  L  F  F  Y  C  I  L  F  L  I  S  *  I  I  R  R  L  L  A  C  F  *  I  Y  N  R  C  I  *  F  L  F  F  C  F  * :   K  K  I  K  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132389"/>
                    <exon start="132264" stop="131995"/>
                    <exon start="131873" stop="131745"/>
                    <exon start="131643" stop="131174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVLFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGSTPAAAPSKGSGTPSAPSANAPAGSSKPGASSPNGAPVSTPAGKSPTSSPTPSGSTASPPSPATVTPAMSPVANGPSTSTPGSSSPVAGGPSSGSGIAPSAGGPSGSAIAPAADGPTVSMSPGPSAGGPLAGGPSEGAPGSSALGPGGSNTPADINTPAGAPENPNSFAVKAFTPSVVLVSAVSLVLTVTLAEFIILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="132694" e_stop="132389"/>
            <exon e_start="132264" e_stop="131995"/>
            <exon e_start="131873" e_stop="131745"/>
            <exon e_start="131643" e_stop="131043"/>
            <exon e_start="130673" e_stop="130663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132694" e_stop="132389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132264" e_stop="131995" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.914">
            <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131873" e_stop="131745" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="131643" e_stop="131043" e_length="601"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131042" i_stop="130674" i_length="369"/>
          </intron>
          <exon e_serial="5" e_score="0.909">
            <gDNA_exon_boundary e_start="130673" e_stop="130663" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132694" stop="132389"/>
              <exon start="132264" stop="132075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132682" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132681" stop="132389"/>
              <exon start="132264" stop="132100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132674" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132673" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132664" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132663" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132635" stop="132389"/>
              <exon start="132264" stop="132019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132577" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132552" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132054" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132018" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131745"/>
              <exon start="131643" stop="131302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131788" stop="131745"/>
              <exon start="131643" stop="131111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131782" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131781" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131634" stop="131153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131564" stop="131043"/>
              <exon start="130673" stop="130663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131525" stop="131052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131424" stop="131070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131350" stop="131092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC : TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG : GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG : GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTT : AAAACAAAAAA</gDNA_template>
            <first_frame> R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  :  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  :  A  Q  L  R  Q  L  L  R  L  K  D  R  V  H  R  R  H  L  Q  L  T  L  R  R  D  H  L  N  R  V  H  R  H  L  M  G  H  R  Y  L  L  L  Q  :  V  N  H  Q  P  H  H  L  H  L  P  V  Q  P  H  L  H  H  L  L  R  P  *  L  R  Q  C  L  R  *  Q  M  D  R  Q  L  V  H  Q  V  L  L  H  L  *  Q  A  D  H  R  Q  E  A  V  L  H  R  R  Q  A  D  H  L  E  A  L  L  H  R  R  Q  T  D  Q  Q  *  V  C  H  R  D  H  R  Q  E  D  H  W  Q  A  D  H  R  R  E  H  R  E  V  V  L  *  V  P  A  A  A  I  L  R  R  T  S  I  R  Q  L  A  H  Q  K  T  Q  I  H  L  Q  *  R  H  L  L  H  Q  L  Y  L  C  Q  P  F  H  S  F  *  L  *  L  W  Q  N  L  L  F  Y  L  R  V  K  L  L  D  I  I  F  N  L  C  F  F  F  F  F  T  V  F  C  F  *  F  L  E  *  F  G  D  Y  W  R  V  F  R  Y  T  I  D  V  F  N  F   : *  N  K  K </first_frame>
            <second_frame>  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S :   V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R :   L  N  S  G  S  C  S  V  *  R  I  G  Y  T  V  G  T  F  S  *  R  S  G  G  I  I  *  T  G  C  I  V  T  *  W  G  T  G  I  Y  S  C  R :   *  I  T  N  L  I  T  Y  T  F  R  F  N  R  I  S  T  I  S  C  D  R  N  S  G  N  V  S  G  S  K  W  T  V  N  *  Y  T  R  F  F  F  T  C  S  R  R  T  I  V  R  K  R  Y  C  T  V  G  R  R  T  I  W  K  R  Y  C  T  G  G  R  R  T  N  S  K  Y  V  T  G  T  I  G  R  R  T  I  G  R  R  T  I  G  G  S  T  G  K  *  C  F  R  S  R  R  Q  Q  Y  S  G  G  H  Q  Y  A  S  W  R  T  R  K  P  K  F  I  C  S  E  G  I  Y  S  I  S  C  T  C  V  S  R  F  T  R  F  N  C  D  F  G  R  I  Y  Y  F  T  L  G  *  N  Y  *  I  L  Y  L  I  C  V  F  S  F  F  L  L  Y  F  V  F  N  F  L  N  N  S  E  I  I  G  V  F  L  D  I  Q  *  M  Y  L  I  F  :  K  T  K   </second_frame>
            <third_frame>   T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V   : L  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G   : G  S  T  P  A  A  A  P  S  K  G  S  G  T  P  S  A  P  S  A  N  A  P  A  G  S  S  K  P  G  A  S  S  P  N  G  A  P  V  S  T  P  A   : G  K  S  P  T  S  S  P  T  P  S  G  S  T  A  S  P  P  S  P  A  T  V  T  P  A  M  S  P  V  A  N  G  P  S  T  S  T  P  G  S  S  S  P  V  A  G  G  P  S  S  G  S  G  I  A  P  S  A  G  G  P  S  G  S  A  I  A  P  A  A  D  G  P  T  V  S  M  S  P  G  P  S  A  G  G  P  L  A  G  G  P  S  E  G  A  P  G  S  S  A  L  G  P  G  G  S  N  T  P  A  D  I  N  T  P  A  G  A  P  E  N  P  N  S  F  A  V  K  A  F  T  P  S  V  V  L  V  S  A  V  S  L  V  L  T  V  T  L  A  E  F  I  I  L  P  *  G  K  I  I  R  Y  Y  I  *  F  V  F  F  L  F  F  Y  C  I  L  F  L  I  S  *  I  I  R  R  L  L  A  C  F  *  I  Y  N  R  C  I  *  F  L :   K  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132389"/>
                    <exon start="132264" stop="131995"/>
                    <exon start="131873" stop="131745"/>
                    <exon start="131643" stop="131174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVLFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGSTPAAAPSKGSGTPSAPSANAPAGSSKPGASSPNGAPVSTPAGKSPTSSPTPSGSTASPPSPATVTPAMSPVANGPSTSTPGSSSPVAGGPSSGSGIAPSAGGPSGSAIAPAADGPTVSMSPGPSAGGPLAGGPSEGAPGSSALGPGGSNTPADINTPAGAPENPNSFAVKAFTPSVVLVSAVSLVLTVTLAEFIILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="132694" e_stop="132389"/>
            <exon e_start="132264" e_stop="131995"/>
            <exon e_start="131873" e_stop="131745"/>
            <exon e_start="131643" e_stop="131111"/>
            <exon e_start="123572" e_stop="123490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.730" e_score="0.994"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132694" e_stop="132389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132388" i_stop="132265" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132264" e_stop="131995" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.914">
            <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131873" e_stop="131745" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="131643" e_stop="131111" e_length="533"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.730">
            <gDNA_intron_boundary i_start="131110" i_stop="123573" i_length="7538"/>
          </intron>
          <exon e_serial="5" e_score="0.643">
            <gDNA_exon_boundary e_start="123572" e_stop="123490" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132694" stop="132389"/>
              <exon start="132264" stop="132075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132683" stop="132389"/>
              <exon start="132264" stop="132121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132682" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132681" stop="132389"/>
              <exon start="132264" stop="132100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132674" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132673" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="132389"/>
              <exon start="132264" stop="132122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132664" stop="132389"/>
              <exon start="132264" stop="132023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132663" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132635" stop="132389"/>
              <exon start="132264" stop="132019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132577" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132552" stop="132389"/>
              <exon start="132264" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132054" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131745"/>
              <exon start="131643" stop="131302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131788" stop="131745"/>
              <exon start="131643" stop="131111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131782" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131781" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131634" stop="131153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131318" stop="131111"/>
              <exon start="123572" stop="123490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365770" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTC : TGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG : GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG : GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTT : AGTGTGTGTGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  :  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  :  A  Q  L  R  Q  L  L  R  L  K  D  R  V  H  R  R  H  L  Q  L  T  L  R  R  D  H  L  N  R  V  H  R  H  L  M  G  H  R  Y  L  L  L  Q  :  V  N  H  Q  P  H  H  L  H  L  P  V  Q  P  H  L  H  H  L  L  R  P  *  L  R  Q  C  L  R  *  Q  M  D  R  Q  L  V  H  Q  V  L  L  H  L  *  Q  A  D  H  R  Q  E  A  V  L  H  R  R  Q  A  D  H  L  E  A  L  L  H  R  R  Q  T  D  Q  Q  *  V  C  H  R  D  H  R  Q  E  D  H  W  Q  A  D  H  R  R  E  H  R  E  V  V  L  *  V  P  A  A  A  I  L  R  R  T  S  I  R  Q  L  A  H  Q  K  T  Q  I  H  L  Q  *  R  H  L  L  H  Q  L  Y  L  C  Q  P  F  H  S  F  *  L  *  L  W  Q  N  L  L  F  Y  L  R  V  K  L  L  D  I  I  F  N  L  C  F  F  F  F  F  T  V  F  C  L :   V  C  V  C  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S :   V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R :   L  N  S  G  S  C  S  V  *  R  I  G  Y  T  V  G  T  F  S  *  R  S  G  G  I  I  *  T  G  C  I  V  T  *  W  G  T  G  I  Y  S  C  R :   *  I  T  N  L  I  T  Y  T  F  R  F  N  R  I  S  T  I  S  C  D  R  N  S  G  N  V  S  G  S  K  W  T  V  N  *  Y  T  R  F  F  F  T  C  S  R  R  T  I  V  R  K  R  Y  C  T  V  G  R  R  T  I  W  K  R  Y  C  T  G  G  R  R  T  N  S  K  Y  V  T  G  T  I  G  R  R  T  I  G  R  R  T  I  G  G  S  T  G  K  *  C  F  R  S  R  R  Q  Q  Y  S  G  G  H  Q  Y  A  S  W  R  T  R  K  P  K  F  I  C  S  E  G  I  Y  S  I  S  C  T  C  V  S  R  F  T  R  F  N  C  D  F  G  R  I  Y  Y  F  T  L  G  *  N  Y  *  I  L  Y  L  I  C  V  F  S  F  F  L  L  Y  F  V   : *  C  V  C  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V   : L  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G   : G  S  T  P  A  A  A  P  S  K  G  S  G  T  P  S  A  P  S  A  N  A  P  A  G  S  S  K  P  G  A  S  S  P  N  G  A  P  V  S  T  P  A   : G  K  S  P  T  S  S  P  T  P  S  G  S  T  A  S  P  P  S  P  A  T  V  T  P  A  M  S  P  V  A  N  G  P  S  T  S  T  P  G  S  S  S  P  V  A  G  G  P  S  S  G  S  G  I  A  P  S  A  G  G  P  S  G  S  A  I  A  P  A  A  D  G  P  T  V  S  M  S  P  G  P  S  A  G  G  P  L  A  G  G  P  S  E  G  A  P  G  S  S  A  L  G  P  G  G  S  N  T  P  A  D  I  N  T  P  A  G  A  P  E  N  P  N  S  F  A  V  K  A  F  T  P  S  V  V  L  V  S  A  V  S  L  V  L  T  V  T  L  A  E  F  I  I  L  P  *  G  K  I  I  R  Y  Y  I  *  F  V  F  F  L  F  F  Y  C  I  L  F  :  S  V  C  V  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132389"/>
                    <exon start="132264" stop="131995"/>
                    <exon start="131873" stop="131745"/>
                    <exon start="131643" stop="131174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVLFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGSTPAAAPSKGSGTPSAPSANAPAGSSKPGASSPNGAPVSTPAGKSPTSSPTPSGSTASPPSPATVTPAMSPVANGPSTSTPGSSSPVAGGPSSGSGIAPSAGGPSGSAIAPAADGPTVSMSPGPSAGGPLAGGPSEGAPGSSALGPGGSNTPADINTPAGAPENPNSFAVKAFTPSVVLVSAVSLVLTVTLAEFIILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="132720" e_stop="131995"/>
            <exon e_start="131873" e_stop="131745"/>
            <exon e_start="131643" e_stop="130963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.914" e_score="0.998"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="132720" e_stop="131995" e_length="726"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.914">
            <gDNA_intron_boundary i_start="131994" i_stop="131874" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131873" e_stop="131745" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131744" i_stop="131644" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="131643" e_stop="130963" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132720" stop="132119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132668" stop="132142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132192" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132054" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132023" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132018" stop="131995"/>
              <exon start="131873" stop="131745"/>
              <exon start="131643" stop="131071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131858" stop="131745"/>
              <exon start="131643" stop="130963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131836" stop="131745"/>
              <exon start="131643" stop="131302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131788" stop="131745"/>
              <exon start="131643" stop="131111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131782" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131781" stop="131745"/>
              <exon start="131643" stop="131124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131778" stop="131745"/>
              <exon start="131643" stop="131146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131634" stop="131153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131525" stop="131052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131424" stop="131070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131350" stop="131092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAACCTTTCTATTGTTTCTTTCTAGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAG : GCTCAACTCCGGCAGCTGCTCCGTCTAAAGGATCGGGTACACCGTCGGCACCTTCAGCTAACGCTCCGGCGGGATCATCTAAACCGGGTGCATCGTCACCTAATGGGGCACCGGTATCTACTCCTGCAG : GTAAATCACCAACCTCATCACCTACACCTTCCGGTTCAACCGCATCTCCACCATCTCCTGCGACCGTAACTCCGGCAATGTCTCCGGTAGCAAATGGACCGTCAACTAGTACACCAGGTTCTTCTTCACCTGTAGCAGGCGGACCATCGTCAGGAAGCGGTATTGCACCGTCGGCAGGCGGACCATCTGGAAGCGCTATTGCACCGGCGGCAGACGGACCAACAGTAAGTATGTCACCGGGACCATCGGCAGGAGGACCATTGGCAGGCGGACCATCGGAGGGAGCACCGGGAAGTAGTGCTTTAGGTCCCGGCGGCAGCAATACTCCGGCGGACATCAATACGCCAGCTGGCGCACCAGAAAACCCAAATTCATTTGCAGTGAAGGCATTTACTCCATCAGTTGTACTTGTGTCAGCCGTTTCACTCGTTTTAACTGTGACTTTGGCAGAATTTATTATTTTACCTTAGGGTAAAATTATTAGATATTATATTTAATTTGTGTTTTTTCTTTTTTTTTACTGTATTTTGTTTTTAATTTCTTGAATAATTCGGAGATTATTGGCGTGTTTTTAGATATACAATAGATGTATTTAATTTTTATTTTTTTGCTTTTAATTTTTGTGGGTGAGACTTAAAATTTGAATTTATGTATACCAGTTTAATTCTGGTTTTTGTTTTT</gDNA_template>
            <first_frame> F  *  P  F  Y  C  F  F  L  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S  *  V  L  T  C  L  S  L  F  I  I  A  *  R  V  R  T  I  *  L  V  N  E  F  F  L  Y  V  D  T  F  F  L  C  V  Y  V  R  F  F  *  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  :  A  Q  L  R  Q  L  L  R  L  K  D  R  V  H  R  R  H  L  Q  L  T  L  R  R  D  H  L  N  R  V  H  R  H  L  M  G  H  R  Y  L  L  L  Q  :  V  N  H  Q  P  H  H  L  H  L  P  V  Q  P  H  L  H  H  L  L  R  P  *  L  R  Q  C  L  R  *  Q  M  D  R  Q  L  V  H  Q  V  L  L  H  L  *  Q  A  D  H  R  Q  E  A  V  L  H  R  R  Q  A  D  H  L  E  A  L  L  H  R  R  Q  T  D  Q  Q  *  V  C  H  R  D  H  R  Q  E  D  H  W  Q  A  D  H  R  R  E  H  R  E  V  V  L  *  V  P  A  A  A  I  L  R  R  T  S  I  R  Q  L  A  H  Q  K  T  Q  I  H  L  Q  *  R  H  L  L  H  Q  L  Y  L  C  Q  P  F  H  S  F  *  L  *  L  W  Q  N  L  L  F  Y  L  R  V  K  L  L  D  I  I  F  N  L  C  F  F  F  F  F  T  V  F  C  F  *  F  L  E  *  F  G  D  Y  W  R  V  F  R  Y  T  I  D  V  F  N  F  Y  F  F  A  F  N  F  C  G  *  D  L  K  F  E  F  M  Y  T  S  L  I  L  V  F  V  F </first_frame>
            <second_frame>  F  N  L  S  I  V  S  F  *  T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V  R  K  S  *  H  V  S  L  Y  L  L  L  L  E  E  F  E  Q  Y  N  W  *  T  S  F  F  Y  M  L  I  L  F  F  C  V  C  M  C  A  F  F  S  V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R :   L  N  S  G  S  C  S  V  *  R  I  G  Y  T  V  G  T  F  S  *  R  S  G  G  I  I  *  T  G  C  I  V  T  *  W  G  T  G  I  Y  S  C  R :   *  I  T  N  L  I  T  Y  T  F  R  F  N  R  I  S  T  I  S  C  D  R  N  S  G  N  V  S  G  S  K  W  T  V  N  *  Y  T  R  F  F  F  T  C  S  R  R  T  I  V  R  K  R  Y  C  T  V  G  R  R  T  I  W  K  R  Y  C  T  G  G  R  R  T  N  S  K  Y  V  T  G  T  I  G  R  R  T  I  G  R  R  T  I  G  G  S  T  G  K  *  C  F  R  S  R  R  Q  Q  Y  S  G  G  H  Q  Y  A  S  W  R  T  R  K  P  K  F  I  C  S  E  G  I  Y  S  I  S  C  T  C  V  S  R  F  T  R  F  N  C  D  F  G  R  I  Y  Y  F  T  L  G  *  N  Y  *  I  L  Y  L  I  C  V  F  S  F  F  L  L  Y  F  V  F  N  F  L  N  N  S  E  I  I  G  V  F  L  D  I  Q  *  M  Y  L  I  F  I  F  L  L  L  I  F  V  G  E  T  *  N  L  N  L  C  I  P  V  *  F  W  F  L  F   </second_frame>
            <third_frame>   L  T  F  L  L  F  L  S  R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  V  S  L  N  M  S  L  F  I  Y  Y  C  L  K  S  S  N  N  I  I  G  K  R  V  F  S  I  C  *  Y  F  F  F  V  C  V  C  A  L  F  L  V  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G   : G  S  T  P  A  A  A  P  S  K  G  S  G  T  P  S  A  P  S  A  N  A  P  A  G  S  S  K  P  G  A  S  S  P  N  G  A  P  V  S  T  P  A   : G  K  S  P  T  S  S  P  T  P  S  G  S  T  A  S  P  P  S  P  A  T  V  T  P  A  M  S  P  V  A  N  G  P  S  T  S  T  P  G  S  S  S  P  V  A  G  G  P  S  S  G  S  G  I  A  P  S  A  G  G  P  S  G  S  A  I  A  P  A  A  D  G  P  T  V  S  M  S  P  G  P  S  A  G  G  P  L  A  G  G  P  S  E  G  A  P  G  S  S  A  L  G  P  G  G  S  N  T  P  A  D  I  N  T  P  A  G  A  P  E  N  P  N  S  F  A  V  K  A  F  T  P  S  V  V  L  V  S  A  V  S  L  V  L  T  V  T  L  A  E  F  I  I  L  P  *  G  K  I  I  R  Y  Y  I  *  F  V  F  F  L  F  F  Y  C  I  L  F  L  I  S  *  I  I  R  R  L  L  A  C  F  *  I  Y  N  R  C  I  *  F  L  F  F  C  F  *  F  L  W  V  R  L  K  I  *  I  Y  V  Y  Q  F  N  S  G  F  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132301" stop="131995"/>
                    <exon start="131873" stop="131745"/>
                    <exon start="131643" stop="131174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFFVCVCALFLVFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGSTPAAAPSKGSGTPSAPSANAPAGSSKPGASSPNGAPVSTPAGKSPTSSPTPSGSTASPPSPATVTPAMSPVANGPSTSTPGSSSPVAGGPSSGSGIAPSAGGPSGSAIAPAADGPTVSMSPGPSAGGPLAGGPSEGAPGSSALGPGGSNTPADINTPAGAPENPNSFAVKAFTPSVVLVSAVSLVLTVTLAEFIILP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVRKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="132720" e_stop="131872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132720" e_stop="131872" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132720" stop="132119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132669" stop="131872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132668" stop="132142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="132398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAACCTTTCTATTGTTTCTTTCTAGACTTCTCGTGAAGAACTATTTTTTTTTTTTCTATTTCTCGTGACTCTTTTTTAGTGTTTTACTTTTTATCACCACACAAAAAGAGTCATATTGAACTCAAATTTTGAAACAACAAAGAGAAGAAAAATATTGCCCATGGCTCAGCAAATACATGTTGTAGTTTTATTCATGTTGGCTTGTTTGTTCACAACTTCATATTCTTATCAATTTACTGTTGGTGGTAAAGATGGTTGGGTCCTTAACCCTTCTGTTGATTACAACACTTGGTCTCAGCATATGAGATTTATAATCAACGACTCTGTTCGTAAGTCTTAACATGTCTCTCTTTATTTATTATTGCTTGAAGAGTTCGAACAATATAATTGGTAAACGAGTTTTTTCTATATGTTGATACTTTTTTTTTGTGTGTGTATGTGCGCTTTTTTTAGTGTTTAAGTATAAGCAGGGAGCAGATTCTGTGTTGGAGGTGAGTAAGGATGATTATGATAAGTGCAATACTGGAAATCCAATTAAGAAAATGGAGGATGGAAACTCGATTTTCACGTTGGATCGGTCTGGTCCTTTTTACTTTATCAGTGGGAACAAAGATAACTGTGATAAAGGCCAAAAGTTGCAAATTGTTGTGATTTCTGCTAGGAATCAAGGTAAACCACCACAAACTCCGGCACCGGCAGTTGCTCCACCTACTCCTTCTGGAGGTACGCGGAATCAGGATTTTTATTTTATTCCCCGTTGACATTTGCTTATGTGGTTTGCGAGTTATTGTATCTGAAGGTAAAAATTACATGATTCGATTGAGAACTTACGTGATTAATGCAGGC</gDNA_template>
            <first_frame> F  *  P  F  Y  C  F  F  L  D  F  S  *  R  T  I  F  F  F  S  I  S  R  D  S  F  L  V  F  Y  F  L  S  P  H  K  K  S  H  I  E  L  K  F  *  N  N  K  E  K  K  N  I  A  H  G  S  A  N  T  C  C  S  F  I  H  V  G  L  F  V  H  N  F  I  F  L  S  I  Y  C  W  W  *  R  W  L  G  P  *  P  F  C  *  L  Q  H  L  V  S  A  Y  E  I  Y  N  Q  R  L  C  S  *  V  L  T  C  L  S  L  F  I  I  A  *  R  V  R  T  I  *  L  V  N  E  F  F  L  Y  V  D  T  F  F  L  C  V  Y  V  R  F  F  *  C  L  S  I  S  R  E  Q  I  L  C  W  R  *  V  R  M  I  M  I  S  A  I  L  E  I  Q  L  R  K  W  R  M  E  T  R  F  S  R  W  I  G  L  V  L  F  T  L  S  V  G  T  K  I  T  V  I  K  A  K  S  C  K  L  L  *  F  L  L  G  I  K  V  N  H  H  K  L  R  H  R  Q  L  L  H  L  L  L  L  E  V  R  G  I  R  I  F  I  L  F  P  V  D  I  C  L  C  G  L  R  V  I  V  S  E  G  K  N  Y  M  I  R  L  R  T  Y  V  I  N  A  G </first_frame>
            <second_frame>  F  N  L  S  I  V  S  F  *  T  S  R  E  E  L  F  F  F  F  L  F  L  V  T  L  F  *  C  F  T  F  Y  H  H  T  K  R  V  I  L  N  S  N  F  E  T  T  K  R  R  K  I  L  P  M  A  Q  Q  I  H  V  V  V  L  F  M  L  A  C  L  F  T  T  S  Y  S  Y  Q  F  T  V  G  G  K  D  G  W  V  L  N  P  S  V  D  Y  N  T  W  S  Q  H  M  R  F  I  I  N  D  S  V  R  K  S  *  H  V  S  L  Y  L  L  L  L  E  E  F  E  Q  Y  N  W  *  T  S  F  F  Y  M  L  I  L  F  F  C  V  C  M  C  A  F  F  S  V  *  V  *  A  G  S  R  F  C  V  G  G  E  *  G  *  L  *  *  V  Q  Y  W  K  S  N  *  E  N  G  G  W  K  L  D  F  H  V  G  S  V  W  S  F  L  L  Y  Q  W  E  Q  R  *  L  *  *  R  P  K  V  A  N  C  C  D  F  C  *  E  S  R  *  T  T  T  N  S  G  T  G  S  C  S  T  Y  S  F  W  R  Y  A  E  S  G  F  L  F  Y  S  P  L  T  F  A  Y  V  V  C  E  L  L  Y  L  K  V  K  I  T  *  F  D  *  E  L  T  *  L  M  Q   </second_frame>
            <third_frame>   L  T  F  L  L  F  L  S  R  L  L  V  K  N  Y  F  F  F  F  Y  F  S  *  L  F  F  S  V  L  L  F  I  T  T  Q  K  E  S  Y  *  T  Q  I  L  K  Q  Q  R  E  E  K  Y  C  P  W  L  S  K  Y  M  L  *  F  Y  S  C  W  L  V  C  S  Q  L  H  I  L  I  N  L  L  L  V  V  K  M  V  G  S  L  T  L  L  L  I  T  T  L  G  L  S  I  *  D  L  *  S  T  T  L  F  V  S  L  N  M  S  L  F  I  Y  Y  C  L  K  S  S  N  N  I  I  G  K  R  V  F  S  I  C  *  Y  F  F  F  V  C  V  C  A  L  F  L  V  F  K  Y  K  Q  G  A  D  S  V  L  E  V  S  K  D  D  Y  D  K  C  N  T  G  N  P  I  K  K  M  E  D  G  N  S  I  F  T  L  D  R  S  G  P  F  Y  F  I  S  G  N  K  D  N  C  D  K  G  Q  K  L  Q  I  V  V  I  S  A  R  N  Q  G  K  P  P  Q  T  P  A  P  A  V  A  P  P  T  P  S  G  G  T  R  N  Q  D  F  Y  F  I  P  R  *  H  L  L  M  W  F  A  S  Y  C  I  *  R  *  K  L  H  D  S  I  E  N  L  R  D  *  C  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132301" stop="131957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFFVCVCALFLVFKYKQGADSVLEVSKDDYDKCNTGNPIKKMEDGNSIFTLDRSGPFYFISGNKDNCDKGQKLQIVVISARNQGKPPQTPAPAVAPPTPSGGTRNQDFYFIPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132638" stop="132378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTFYHHTKRVILNSNFETTKRRKILPMAQQIHVVVLFMLACLFTTSYSYQFTVGGKDGWVLNPSVDYNTWSQHMRFIINDSVRKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="130655" PGL_stop="131802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130655" e_stop="130673"/>
            <exon e_start="131084" e_stop="131802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.842"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.842">
            <gDNA_exon_boundary e_start="130655" e_stop="130673" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130674" i_stop="131083" i_length="410"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="131084" e_stop="131802" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130655" stop="130673"/>
              <exon start="131084" stop="131802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539157" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATATTTTTTTGTTTT : TAATCTCCGAATTATTCAAGAAATTAAAAACAAAATACAGTAAAAAAAAAGAAAAAACACAAATTAAATATAATATCTAATAATTTTACCCTAAGGTAAAATAATAAATTCTGCCAAAGTCACAGTTAAAACGAGTGAAACGGCTGACACAAGTACAACTGATGGAGTAAATGCCTTCACTGCAAATGAATTTGGGTTTTCTGGTGCGCCAGCTGGCGTATTGATGTCCGCCGGAGTATTGCTGCCGCCGGGACCTAAAGCACTACTTCCCGGTGCTCCCTCCGATGGTCCGCCTGCCAATGGTCCTCCTGCCGATGGTCCCGGTGACATACTTACTGTTGGTCCGTCTGCCGCCGGTGCAATAGCGCTTCCAGATGGTCCGCCTGCCGACGGTGCAATACCGCTTCCTGACGATGGTCCGCCTGCTACAGGTGAAGAAGAACCTGGTGTACTAGTTGACGGTCCATTTGCTACCGGAGACATTGCCGGAGTTACGGTCGCAGGAGATGGTGGAGATGCGGTTGAACCGGAAGGTGTAGGTGATGAGGTTGGTGATTTACCTGAACAAACAGATAAACTATATGATTCAATTTACGTTCAATACGTTAAAAATCGAACGAAATTAAACGTTGAATCCATCAAATCGAAATTCTACATTTACCTGCAGGAGTAGATACCGGTGCCCCATTAGGTGACGATGCACCCGGTTTAGATGATCC</gDNA_template>
            <first_frame> F  Y  I  F  L  F   : L  I  S  E  L  F  K  K  L  K  T  K  Y  S  K  K  K  E  K  T  Q  I  K  Y  N  I  *  *  F  Y  P  K  V  K  *  *  I  L  P  K  S  Q  L  K  R  V  K  R  L  T  Q  V  Q  L  M  E  *  M  P  S  L  Q  M  N  L  G  F  L  V  R  Q  L  A  Y  *  C  P  P  E  Y  C  C  R  R  D  L  K  H  Y  F  P  V  L  P  P  M  V  R  L  P  M  V  L  L  P  M  V  P  V  T  Y  L  L  L  V  R  L  P  P  V  Q  *  R  F  Q  M  V  R  L  P  T  V  Q  Y  R  F  L  T  M  V  R  L  L  Q  V  K  K  N  L  V  Y  *  L  T  V  H  L  L  P  E  T  L  P  E  L  R  S  Q  E  M  V  E  M  R  L  N  R  K  V  *  V  M  R  L  V  I  Y  L  N  K  Q  I  N  Y  M  I  Q  F  T  F  N  T  L  K  I  E  R  N  *  T  L  N  P  S  N  R  N  S  T  F  T  C  R  S  R  Y  R  C  P  I  R  *  R  C  T  R  F  R  *  S </first_frame>
            <second_frame>  F  I  F  F  C  F  :  *  S  P  N  Y  S  R  N  *  K  Q  N  T  V  K  K  K  K  K  H  K  L  N  I  I  S  N  N  F  T  L  R  *  N  N  K  F  C  Q  S  H  S  *  N  E  *  N  G  *  H  K  Y  N  *  W  S  K  C  L  H  C  K  *  I  W  V  F  W  C  A  S  W  R  I  D  V  R  R  S  I  A  A  A  G  T  *  S  T  T  S  R  C  S  L  R  W  S  A  C  Q  W  S  S  C  R  W  S  R  *  H  T  Y  C  W  S  V  C  R  R  C  N  S  A  S  R  W  S  A  C  R  R  C  N  T  A  S  *  R  W  S  A  C  Y  R  *  R  R  T  W  C  T  S  *  R  S  I  C  Y  R  R  H  C  R  S  Y  G  R  R  R  W  W  R  C  G  *  T  G  R  C  R  *  *  G  W  *  F  T  *  T  N  R  *  T  I  *  F  N  L  R  S  I  R  *  K  S  N  E  I  K  R  *  I  H  Q  I  E  I  L  H  L  P  A  G  V  D  T  G  A  P  L  G  D  D  A  P  G  L  D  D   </second_frame>
            <third_frame>   L  Y  F  F  V  F :   N  L  R  I  I  Q  E  I  K  N  K  I  Q  *  K  K  R  K  N  T  N  *  I  *  Y  L  I  I  L  P  *  G  K  I  I  N  S  A  K  V  T  V  K  T  S  E  T  A  D  T  S  T  T  D  G  V  N  A  F  T  A  N  E  F  G  F  S  G  A  P  A  G  V  L  M  S  A  G  V  L  L  P  P  G  P  K  A  L  L  P  G  A  P  S  D  G  P  P  A  N  G  P  P  A  D  G  P  G  D  I  L  T  V  G  P  S  A  A  G  A  I  A  L  P  D  G  P  P  A  D  G  A  I  P  L  P  D  D  G  P  P  A  T  G  E  E  E  P  G  V  L  V  D  G  P  F  A  T  G  D  I  A  G  V  T  V  A  G  D  G  G  D  A  V  E  P  E  G  V  G  D  E  V  G  D  L  P  E  Q  T  D  K  L  Y  D  S  I  Y  V  Q  Y  V  K  N  R  T  K  L  N  V  E  S  I  K  S  K  F  Y  I  Y  L  Q  E  *  I  P  V  P  H  *  V  T  M  H  P  V  *  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131178" stop="131756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKIINSAKVTVKTSETADTSTTDGVNAFTANEFGFSGAPAGVLMSAGVLLPPGPKALLPGAPSDGPPANGPPADGPGDILTVGPSAAGAIALPDGPPADGAIPLPDDGPPATGEEEPGVLVDGPFATGDIAGVTVAGDGGDAVEPEGVGDEVGDLPEQTDKLYDSIYVQYVKNRTKLNVESIKSKFYIYLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="144978" PGL_stop="145551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144978" e_stop="145551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="144978" e_stop="145551" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144978" stop="145551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144978" stop="145544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144979" stop="145530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTATATAATACCAATTACTTAAACTTAATTGTTCTAATTTTATTACTGCATTTCATTGTAAAGCTAATAATCCACTATTTGGATCTTCTCCTGTTATCAATGTATGTATTTTATTTTTAAAATTATAAGGATTTGGTCCTAATGATACTAAATACTGAAATTCTGATGGCTTCAAAACATAGATCAGCAGCCTTCATGGTAAGAAATCATAATGAAATAGTTAGAGGAAAAACATTTATATCTGACCATCTATTATCATATATGGTAATTAATGTCTTTGTTCCTAAATTTTTTCTAGTTAATCCTTTAATTCCTATTACTATTAATCCTAAATGCATTAAATTTTTTCTAACATATTTTATTTCTTTTACAGATTCTTCATTTATGAGGGGTAAAGATACAGAGTTTTTTCCTAATACCGATAATTGTTCCTCTCTATAATGTCTATATAATTGAGATTTTGAATTTGTATTATATAAAACTTTTGGATTTAATAAATTTAATTGATTCTGTTGGAAAATTTGTATATCTTTATCTGTATCTATAATTTCGTCTAATTGTTGACTATTTT</gDNA_template>
            <first_frame> S  L  Y  N  T  N  Y  L  N  L  I  V  L  I  L  L  L  H  F  I  V  K  L  I  I  H  Y  L  D  L  L  L  L  S  M  Y  V  F  Y  F  *  N  Y  K  D  L  V  L  M  I  L  N  T  E  I  L  M  A  S  K  H  R  S  A  A  F  M  V  R  N  H  N  E  I  V  R  G  K  T  F  I  S  D  H  L  L  S  Y  M  V  I  N  V  F  V  P  K  F  F  L  V  N  P  L  I  P  I  T  I  N  P  K  C  I  K  F  F  L  T  Y  F  I  S  F  T  D  S  S  F  M  R  G  K  D  T  E  F  F  P  N  T  D  N  C  S  S  L  *  C  L  Y  N  *  D  F  E  F  V  L  Y  K  T  F  G  F  N  K  F  N  *  F  C  W  K  I  C  I  S  L  S  V  S  I  I  S  S  N  C  *  L  F  </first_frame>
            <second_frame>  L  Y  I  I  P  I  T  *  T  *  L  F  *  F  Y  Y  C  I  S  L  *  S  *  *  S  T  I  W  I  F  S  C  Y  Q  C  M  Y  F  I  F  K  I  I  R  I  W  S  *  *  Y  *  I  L  K  F  *  W  L  Q  N  I  D  Q  Q  P  S  W  *  E  I  I  M  K  *  L  E  E  K  H  L  Y  L  T  I  Y  Y  H  I  W  *  L  M  S  L  F  L  N  F  F  *  L  I  L  *  F  L  L  L  L  I  L  N  A  L  N  F  F  *  H  I  L  F  L  L  Q  I  L  H  L  *  G  V  K  I  Q  S  F  F  L  I  P  I  I  V  P  L  Y  N  V  Y  I  I  E  I  L  N  L  Y  Y  I  K  L  L  D  L  I  N  L  I  D  S  V  G  K  F  V  Y  L  Y  L  Y  L  *  F  R  L  I  V  D  Y  F </second_frame>
            <third_frame>   F  I  *  Y  Q  L  L  K  L  N  C  S  N  F  I  T  A  F  H  C  K  A  N  N  P  L  F  G  S  S  P  V  I  N  V  C  I  L  F  L  K  L  *  G  F  G  P  N  D  T  K  Y  *  N  S  D  G  F  K  T  *  I  S  S  L  H  G  K  K  S  *  *  N  S  *  R  K  N  I  Y  I  *  P  S  I  I  I  Y  G  N  *  C  L  C  S  *  I  F  S  S  *  S  F  N  S  Y  Y  Y  *  S  *  M  H  *  I  F  S  N  I  F  Y  F  F  Y  R  F  F  I  Y  E  G  *  R  Y  R  V  F  S  *  Y  R  *  L  F  L  S  I  M  S  I  *  L  R  F  *  I  C  I  I  *  N  F  W  I  *  *  I  *  L  I  L  L  E  N  L  Y  I  F  I  C  I  Y  N  F  V  *  L  L  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029N13.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145101" stop="145421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYKDLVLMILNTEILMASKHRSAAFMVRNHNEIVRGKTFISDHLLSYMVINVFVPKFFLVNPLIPITINPKCIKFFLTYFISFTDSSFMRGKDTEFFPNTDNCSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 224 chains have been computed
$ 
$ memory statistics:
$ 1085936 bytes spliced alignments in total
$ 140 spliced alignments have been stored
$ 7756 bytes was the average size of a spliced alignment
$ 42088 bytes predicted gene locations in total
$ 28 predicted gene locations have been stored
$ 1503 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 259 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:28:35
-->
