<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:18:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712615" ref_strand="+" ref_description="SGN-E712615 [FB05BD04]">
      <seq>ggaggggcgatggtcccactctggttgagtgtgagacttaccggtttagaggacactctttggccgatccagatgagcttcgtgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcacttgtattgcttctgaagatctagttagtttcctggcattctatctggaccatttgtttagtttctttcagcttctttgctggtccgaaactttgttcgaaatgaagttcatccatttttagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="15286" stop="13275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="14960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14959" i_stop="14224" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14223" g_stop="13583" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="731" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="743"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E712615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="14960"/>
          <exon e_start="14223" e_stop="13583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCAGATGAGCTTCGTGACCCTGGTGAGAATTCCAATTCCCTTTTGTCTCTAGTGTACTTAGTTTATATTTTCCTAATCCTTTCAGCTTTATTTCTTTATAGTATACTGCGACTGGTATTAGTAGTACCAGACTCTGGCTTTAGCATATATTTTGAACTTGTTGAATGTACCAACCATTACATTCTCTTTATATTCTATTAGTCTATCTCATAAAACTCGTGTAGCTTTTCTGTAGTCTTTGTTAAATGTGATTTCATTACACTTTTGACCCTTTTTGAGAAAAAAAAACAACTAGTTTGGAGTTGAGTCTTTGCTTTTTAGTTGTTGTGCTGTTTGTAGTTAGAACTAGTGAATACCATGATATCTGCATTTTGATCTATCGGACAGTCAAAAATTGGTTGAAGACTATGGAAATTGCTATGCTTAAGTAATGTGAGAAAATCTATTATTGCACTGGTAAAGTGTGTGCAATGAATGTTTTCGCCCTTTGATCTCTATTGCTTCCATTTAAGACCAAAACTTTAAGTATGAGTGTCACCCCATATTTGTATACGGCGGATGAAGTGTATAGATTATAGACAACATAAGAAAACTACGCACAACAAAATTGCTCTCGTGGACAGAACTCCAGTTTTGAAATGCTATAAATTTTATGACAGCTTATAATAGAATTAGCCTCTGAAATCTATCATTTTTACTGTTACATATTATTAGCCAATGATTTATCTTATTTGACCTTAATCTGTTCATCTTGGCAGCTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTTGTATTGCTTCTGAAGATCTAGTTAGTTTCCTGGCATTCTATCTGGACCATTTGTTTAGTTTCTTTCAGCTTCTTTGCTGGTCCGAAACTTTGTTCGAAATGAAGTTCATCCATTTTTA</genome_strand>
        <mrna_strand>GGAGGGGCGATGGTCCCACTCTGGTTGAGTGTGAGACTTACCGGTTTAGAGGACACTCTTTGGCCGATCCAGATGAGCTTCGTGACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTTGTATTGCTTCTGAAGATCTAGTTAGTTTCCTGGCATTCTATCTGGACCATTTGTTTAGTTTCTTTCAGCTTCTTTGCTGGTCCGAAACTTTGTTCGAAATGAAGTTCATCCATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712617" ref_strand="+" ref_description="SGN-E712617 [FB05BD06]">
      <seq>ggaggggcgatggtcccactctggttgagtgtgagacttaccggtttagaggacactctttggccgatccagatgagcttcgtgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcacttgtattgcttctgaagatctagttagtttcctggcattctatctggaccatttgtttagtttctttcagcttctttgctggtccgaaactttgttcgaaatgaagttcatccatttttagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="15286" stop="13275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="14960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14959" i_stop="14224" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14223" g_stop="13583" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="731" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="743"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E712617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="14960"/>
          <exon e_start="14223" e_stop="13583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCAGATGAGCTTCGTGACCCTGGTGAGAATTCCAATTCCCTTTTGTCTCTAGTGTACTTAGTTTATATTTTCCTAATCCTTTCAGCTTTATTTCTTTATAGTATACTGCGACTGGTATTAGTAGTACCAGACTCTGGCTTTAGCATATATTTTGAACTTGTTGAATGTACCAACCATTACATTCTCTTTATATTCTATTAGTCTATCTCATAAAACTCGTGTAGCTTTTCTGTAGTCTTTGTTAAATGTGATTTCATTACACTTTTGACCCTTTTTGAGAAAAAAAAACAACTAGTTTGGAGTTGAGTCTTTGCTTTTTAGTTGTTGTGCTGTTTGTAGTTAGAACTAGTGAATACCATGATATCTGCATTTTGATCTATCGGACAGTCAAAAATTGGTTGAAGACTATGGAAATTGCTATGCTTAAGTAATGTGAGAAAATCTATTATTGCACTGGTAAAGTGTGTGCAATGAATGTTTTCGCCCTTTGATCTCTATTGCTTCCATTTAAGACCAAAACTTTAAGTATGAGTGTCACCCCATATTTGTATACGGCGGATGAAGTGTATAGATTATAGACAACATAAGAAAACTACGCACAACAAAATTGCTCTCGTGGACAGAACTCCAGTTTTGAAATGCTATAAATTTTATGACAGCTTATAATAGAATTAGCCTCTGAAATCTATCATTTTTACTGTTACATATTATTAGCCAATGATTTATCTTATTTGACCTTAATCTGTTCATCTTGGCAGCTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTTGTATTGCTTCTGAAGATCTAGTTAGTTTCCTGGCATTCTATCTGGACCATTTGTTTAGTTTCTTTCAGCTTCTTTGCTGGTCCGAAACTTTGTTCGAAATGAAGTTCATCCATTTTTA</genome_strand>
        <mrna_strand>GGAGGGGCGATGGTCCCACTCTGGTTGAGTGTGAGACTTACCGGTTTAGAGGACACTCTTTGGCCGATCCAGATGAGCTTCGTGACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTTGTATTGCTTCTGAAGATCTAGTTAGTTTCCTGGCATTCTATCTGGACCATTTGTTTAGTTTCTTTCAGCTTCTTTGCTGGTCCGAAACTTTGTTCGAAATGAAGTTCATCCATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714923" ref_strand="+" ref_description="SGN-E714923 [FB12DC12]">
      <seq>cgcttgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcaannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="14526" stop="13404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14223" g_stop="13701" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="535" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="551"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E714923" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14223" e_stop="13701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTT</genome_strand>
        <mrna_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350184" ref_strand="+" ref_description="SGN-E350184 [cTOS-4-E22]">
      <seq>tgagacttaccggtttagaggacactctttggccgatccagatgagcttcgtgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="15286" stop="13404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15018" g_stop="14960" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14959" i_stop="14224" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14223" g_stop="13707" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="576" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="588"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E350184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15018" e_stop="14960"/>
          <exon e_start="14223" e_stop="13707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCAGATGAGCTTCGTGACCCTGGTGAGAATTCCAATTCCCTTTTGTCTCTAGTGTACTTAGTTTATATTTTCCTAATCCTTTCAGCTTTATTTCTTTATAGTATACTGCGACTGGTATTAGTAGTACCAGACTCTGGCTTTAGCATATATTTTGAACTTGTTGAATGTACCAACCATTACATTCTCTTTATATTCTATTAGTCTATCTCATAAAACTCGTGTAGCTTTTCTGTAGTCTTTGTTAAATGTGATTTCATTACACTTTTGACCCTTTTTGAGAAAAAAAAACAACTAGTTTGGAGTTGAGTCTTTGCTTTTTAGTTGTTGTGCTGTTTGTAGTTAGAACTAGTGAATACCATGATATCTGCATTTTGATCTATCGGACAGTCAAAAATTGGTTGAAGACTATGGAAATTGCTATGCTTAAGTAATGTGAGAAAATCTATTATTGCACTGGTAAAGTGTGTGCAATGAATGTTTTCGCCCTTTGATCTCTATTGCTTCCATTTAAGACCAAAACTTTAAGTATGAGTGTCACCCCATATTTGTATACGGCGGATGAAGTGTATAGATTATAGACAACATAAGAAAACTACGCACAACAAAATTGCTCTCGTGGACAGAACTCCAGTTTTGAAATGCTATAAATTTTATGACAGCTTATAATAGAATTAGCCTCTGAAATCTATCATTTTTACTGTTACATATTATTAGCCAATGATTTATCTTATTTGACCTTAATCTGTTCATCTTGGCAGCTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</genome_strand>
        <mrna_strand>TGAGACTTACCGGTTTAGAGGACACTCTTTGGCCGATCCAGATGAGCTTCGTGACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351532" ref_strand="+" ref_description="SGN-E351532 [cTOS-12-C18]">
      <seq>tgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="14524" stop="13404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14223" g_stop="13707" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="519" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="531"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E351532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14223" e_stop="13707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</genome_strand>
        <mrna_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354873" ref_strand="+" ref_description="SGN-E354873 [cTOS-19-F24]">
      <seq>tgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttcttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="14524" stop="13404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14223" g_stop="13707" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="519" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="531"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E354873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14223" e_stop="13707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</genome_strand>
        <mrna_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279014" ref_strand="+" ref_description="SGN-E279014 [cLER-2-J8]">
      <seq>tttaaaaaggaaagcaaggtcttttagatttagttgttcatgatatagtacaacttgaaaacaatatgaaactaaaaaagacgacaaaattctgacctaaaattgaaataataaagtacctttgtaccaaacttcctaatacgaaggacttccagacctttatatagaagtataattggcaatcactaattcagtaacttaaaacctgatatcattgattactgaatgtgccttgagacctagacatgagcagtgccttcggtgaacttgggatcttcacatctgtaccttccatcaggcccaatgccaaagccctttggatcagcaaacacgttctcgagcagctggctacgaacaggatgagggctttcatcggcaaactcaacagcttcttcaaccagttcatcaatcttcttatcaatggccttcaactctgcttcacttgccaggttgttctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="13410" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13707" g_stop="14168" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E279014" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13707" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGGAAAGCAAGGTCTTTTAGATTTAGTTGTTCATGATATAGTACAACTTGAAAACAATATGAAACTAAAAAAGACGACAAAATTCTGACCTAAAATTGAAATAATAAAGTACCTTTGTACCAAACTTCCTAATACGAAGGACTTCCAGACCTTTATATAGAAGTATAATTGGCAATCACTAATTCAGTAACTTAAAACCTGATATCATTGATTACTGAATGTGCCTTGAGACCTAGACATGAGCAGTGCCTTCGGTGAACTTGGGATCTTCACATCTGTACCTTCCATCAGGCCCAATGCCAAAGCCCTTTGGATCAGCAAACACGTTCTCGAGCAGCTGGCTACGAACAGGATGAGGGCTTTCATCGGCAAACTCAACAGCTTCTTCAACCAGTTCATCAATCTTCTTATCAATGGCCTTCAACTCTGCTTCACTTGCCAGGTTGTTCTCAAAC</genome_strand>
        <mrna_strand>TTTAAAAAGGAAAGCAAGGTCTTTTAGATTTAGTTGTTCATGATATAGTACAACTTGAAAACAATATGAAACTAAAAAAGACGACAAAATTCTGACCTAAAATTGAAATAATAAAGTACCTTTGTACCAAACTTCCTAATACGAAGGACTTCCAGACCTTTATATAGAAGTATAATTGGCAATCACTAATTCAGTAACTTAAAACCTGATATCATTGATTACTGAATGTGCCTTGAGACCTAGACATGAGCAGTGCCTTCGGTGAACTTGGGATCTTCACATCTGTACCTTCCATCAGGCCCAATGCCAAAGCCCTTTGGATCAGCAAACACGTTCTCGAGCAGCTGGCTACGAACAGGATGAGGGCTTTCATCGGCAAACTCAACAGCTTCTTCAACCAGTTCATCAATCTTCTTATCAATGGCCTTCAACTCTGCTTCACTTGCCAGGTTGTTCTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237263" ref_strand="+" ref_description="SGN-E237263 [cLEL-7-D2](-)">
      <seq>agctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="14396" stop="13410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14096" g_stop="13710" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="406"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E237263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14096" e_stop="13710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTT</genome_strand>
        <mrna_strand>AGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237088" ref_strand="+" ref_description="SGN-E237088 [cLEL-7-D2](-)">
      <seq>gctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgatggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaagaccttgctttcctttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="14395" stop="13410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14095" g_stop="13710" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="405"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E237088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14095" e_stop="13710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTT</genome_strand>
        <mrna_strand>GCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371120" ref_strand="+" ref_description="SGN-E371120 [TUS-28-F7](-)">
      <seq>gctaggaggggcgaatggtcccactctggttgagtgtaagacttaccggtttaaaggacactctttggccgatccaaatgagcttcgtgaccctgctaaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtacatgtttgagaacaacctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgttgagtttgccgatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgatgatccaaagggctttggcattgggcctgatggaaggtacaaatgtgaaaatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaatgatatcaggttttaagttactgaattagtgattgccaattatacttctatataaaggtttggaagtccttcgtattaggaagtttggtacaaaggtactttattatttcaattttaggtcagaattttgtcgtcttttttagtttcatattgttttcaagttgtactatatcatgaacaactaaatctaaaaaaaaaaactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="15286" stop="13426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15054" g_stop="14960" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14959" i_stop="14224" i_length="736">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14223" g_stop="13728" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="591" r_length="496" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="612"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E371120" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15054" e_stop="14960"/>
          <exon e_start="14223" e_stop="13728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCAGATGAGCTTCGTGACCCTGGTGAGAATTCCAATTCCCTTTTGTCTCTAGTGTACTTAGTTTATATTTTCCTAATCCTTTCAGCTTTATTTCTTTATAGTATACTGCGACTGGTATTAGTAGTACCAGACTCTGGCTTTAGCATATATTTTGAACTTGTTGAATGTACCAACCATTACATTCTCTTTATATTCTATTAGTCTATCTCATAAAACTCGTGTAGCTTTTCTGTAGTCTTTGTTAAATGTGATTTCATTACACTTTTGACCCTTTTTGAGAAAAAAAAACAACTAGTTTGGAGTTGAGTCTTTGCTTTTTAGTTGTTGTGCTGTTTGTAGTTAGAACTAGTGAATACCATGATATCTGCATTTTGATCTATCGGACAGTCAAAAATTGGTTGAAGACTATGGAAATTGCTATGCTTAAGTAATGTGAGAAAATCTATTATTGCACTGGTAAAGTGTGTGCAATGAATGTTTTCGCCCTTTGATCTCTATTGCTTCCATTTAAGACCAAAACTTTAAGTATGAGTGTCACCCCATATTTGTATACGGCGGATGAAGTGTATAGATTATAGACAACATAAGAAAACTACGCACAACAAAATTGCTCTCGTGGACAGAACTCCAGTTTTGAAATGCTATAAATTTTATGACAGCTTATAATAGAATTAGCCTCTGAAATCTATCATTTTTACTGTTACATATTATTAGCCAATGATTTATCTTATTTGACCTTAATCTGTTCATCTTGGCAGCTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAA</genome_strand>
        <mrna_strand>GCTAGGAGGGGCGAATGGTCCCACTCTGGTTGAGTGTAAGACTTACCGGTTTAAAGGACACTCTTTGGCCGATCCAAATGAGCTTCGTGACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGATGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAAATGTGAAAATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTTTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697199" ref_strand="+" ref_description="SGN-E697199 [FA01AD12]">
      <seq>acgaaatcgagagggtgaggccttaatagttctatcaaattattagtccaacatccccattttgagttctttgacgttaaatccaacaatttgcttacattttcccttcttgttttctccgctcacttcttcctttatatatcacgcttcatcttctgaacaatcccataaaatacatcaagtttttctctgtaatcatggctgcatcagcctcttcttttgctgctaacaattttttgcagcctatcaactccaccagatccattgacaacaacaacaagaagacccttttgggaaatcagcttaaagacagctccttttttcttggatcagctaagaaactctatatgaagaaacccttttcgtctcagaactcgaaaagccgatctaatggtgttttcgctgtttctgaggttgttaagaacaagaagcccaatacagactcctcactctccaatctgttaattaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="16917" stop="15849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16617" g_stop="16151" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16150" i_stop="16095" i_length="56">
            <donor d_prob="0.528" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16094" g_stop="16090" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="472" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E697199" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16617" e_stop="16151"/>
          <exon e_start="16094" e_stop="16090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATCGAGAGGGTGAGGCCTTAATAGTTCTATCAAATTATTAGTCCAACATCCCCATTTTGAGTTCTTTGACGTTAAATCCAACAATTTGCTTACATTTTCCCTTCTTGTTTTCTCCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTGGTACTTGCATGTTTTTAGTTTCTTCTTAAAAAATGTTTCTTTTTGATAATTGTGTTGTTCAGGCCAG</genome_strand>
        <mrna_strand>ACGAAATCGAGAGGGTGAGGCCTTAATAGTTCTATCAAATTATTAGTCCAACATCCCCATTTTGAGTTCTTTGACGTTAAATCCAACAATTTGCTTACATTTTCCCTTCTTGTTTTCTCCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTGTTAATT........................................................ACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473170" ref_strand="+" ref_description="SGN-E473170 [cSTB-31-K2]">
      <seq>ccgctctcttcatcctttatatatcacacttcctcttctgaacaatcccataaaatccatcaaatttttctctgtaatcatggctgcatcagcctcttcttttgctgctaacaaatttttgcagcccatcaactccaccagatccattgacaacaacaacaaaaagacccttttgggaaatcagcttaaagacagctccttttttcttggatcagctaagaaactctatatgaagaaacccttttcgtctcagaactcgaaaagccgatctaatggtgtttttgctgtttctgaggttgttaaggacaagaagctcaatacagactcctcactctccaatctgttaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="16799" stop="15849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16499" g_stop="16151" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E473170" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16499" e_stop="16151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTGGTACTT</genome_strand>
        <mrna_strand>CCGCTCTCTTCATCCTTTATATATCACACTTCCTCTTCTGAACAATCCCATAAAATCCATCAAATTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAAATTTTTGCAGCCCATCAACTCCACCAGATCCATTGACAACAACAACAAAAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTTGCTGTTTCTGAGGTTGTTAAGGACAAGAAGCTCAATACAGACTCCTCACTCTCCAATCTGTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204664" ref_strand="+" ref_description="SGN-E204664 [cLEC-14-O22]">
      <seq>acaattagcttacattttcccttcttgtcttctccgctcacttcttcctttatatatcacgcttcatcttctgaacaatcccataaaatacatcaagtttttctctgtaatcatggctgcatcagcctcttcttttgctgctaacaattttttgcagcctatcaactccaccagatccattgacaacaacaacaagaagacccttttgggaaatcagcttaaagacagctccttttttcttggatcagctaagaaactctatatgaagaaacccttttcgtctcagaactcgaaaagccgatctaatggtgttttcgctgtttctgaggttgttaagaacaagaagcccaatacagactcctcactctccaatctgttaattaccaaggatgaatggttggagttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="16832" stop="15836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16532" g_stop="16157" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E204664" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16532" e_stop="16157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGCTTACATTTTCCCTTCTTGTTTTCTCCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTG</genome_strand>
        <mrna_strand>ACAATTAGCTTACATTTTCCCTTCTTGTCTTCTCCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249172" ref_strand="-" ref_description="SGN-E249172 [cLEF-50-K5]">
      <seq>aaaagattgatgaactggttgaaaaagctgtcgaatttgcggatgaaagccctcatcctgtttgtagccagctgctcaaaaacgtgtttgttgatccaaagggctttggcattgggcctgacggaaggtacaaatgtaaagatcccaagttccccgaaggcccggctcatgtttaggtctcaaggcccattcagtaatcaataaaatcaggttttaagttactgaattagtgattgccaattaaacttttaaataaaggtttggaagtcccccttattaggaagtttgggacaaagggactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatgaccaacaaaatttatttcaaacacccaattttttatttggaaaaaccaagttgtatggttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18645" stop="17604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18344" g_stop="17908" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="478"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E249172" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249172" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18344" e_stop="17908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTATTTGGAAAAACCAAGTTGTATGGTTATA</genome_strand>
        <mrna_strand>AAAAGATTGATGAACTGGTTGAAAAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTTGTAGCCAGCTGCTCAAAAACGTGTTTGTTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAAATGTAAAGATCCCAAGTTCCCCGAAGGCCCGGCTCATGTTTAGGTCTCAAGGCCCATTCAGTAATCAATAAAATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTAAACTTTTAAATAAAGGTTTGGAAGTCCCCCTTATTAGGAAGTTTGGGACAAAGGGACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGACCAACAAAATTTATTTCAAACACCCAATTTTTTATTTGGAAAAACCAAGTTGTATGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282626" ref_strand="-" ref_description="SGN-E282626 [cLER-15-M23]">
      <seq>agtatatgtttgagaacaatctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgtcgaatttgcggatgaaagccctcatcctgttcgcagccagctgctcgagaacgtgtttgctgatccaaagggctttgacattgggcctgacggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatacaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatgaacaacaaaatctatttcaaacacacaatcttttatttggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18698" stop="17622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18398" g_stop="17922" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="488"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E282626" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282626" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18398" e_stop="17922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATAT-CAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTATTTGGAAAAACCAA</genome_strand>
        <mrna_strand>AGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGCAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGACATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATACAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTTTTATTTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326338" ref_strand="+" ref_description="SGN-E326338 [cTOC-14-F12]">
      <seq>gagctaggaggggcgatggtcccactctggttgagtgtgagacttaccggtttagaggacactctttggctgatccagatgagcttcgtgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgccttgaagaagtatatgtttgagaacaatctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgtcgaatttgcggatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgacggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatcaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatgaacaacaaaatctatttcaaacacacaatctcttatttggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="19523" stop="17626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19292" g_stop="19197" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19196" i_stop="18447" i_length="750">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18446" g_stop="17925" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="618" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E326338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19292" e_stop="19197"/>
          <exon e_start="18446" e_stop="17925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATCCAGATGAGCTTCGTGACCCTGGTGAGAATTCCAATCCCCTTCTGTGTCTATTGTACTTATTTTATATTCCCCTAATCCATTCAGCTTTATTTCTTTTAGTACTGCTGCTACTGGTATTAGTAGTACCATACTCTGGCTTTAGCATATGTTTTAAACTTGCTGAATGTACCAATCATTACGTTCTCTTTATACGCTATTGTTAGTCTATCTCATAAAACTCAGGTAGCTTTTCTGTAGTCTTCATTAAATGTGATCTCATTACACTGTTGACTCTTTCGTGAAAAAAAAAAATAGTTTGGAGTTGAAGCTTTGCTTTTTATTGTTGTTGTTGTTCTGTTTGTAGTTAGAACTAGTGAATAACATGATATCTGCATTTTGATCTATCGGAGTGTGACAAATTGGTTGAAGACTATGGAAATTGTAATGCTTAAGAAATGTGAGAAAATCTAGTATTGCGCTGGTAAAGTGTGTGCAATGAACATTTTTCGCCCTTTGATCTATATTGCTTCCATTTAAGACTAAAACGTTAAGTATTAGTGTCTGAGGGTCGCCGCATATTTGTATACTGCAGATGAAGTATATAGATTATAGACAACATAAGAATACTATGCACAACAAAATTGCTCTCATGGACAGAACTCCAGTTTTGAAATGCTATAAATTTTATGACAGCTTATAAGATGATCAGCCTCTGAAATCCATCATTTTTATTGTTGTATATTATAAGCCAATGATTTCTCGTATTTGACCTTAACCTGTTCATCTTGGCAGCTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTATTTGGAAAAAC</genome_strand>
        <mrna_strand>GAGCTAGGAGGGGCGATGGTCCCACTCTGGTTGAGTGTGAGACTTACCGGTTTAGAGGACACTCTTTGGCTGATCCAGATGAGCTTCGTGACCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTATTTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215486" ref_strand="+" ref_description="SGN-E215486 [cLEL-20-E24](-)">
      <seq>attgataagaagattgatgaactggttaagaagctgtcgaatttgcggatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgacggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatcaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatcaacaacaaaatctatttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18651" stop="17643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18351" g_stop="17936" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E215486" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18351" e_stop="17936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTA</genome_strand>
        <mrna_strand>ATTGATAAGAAGATTGATGAACTGGTT-AAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATCAACAACAAAATCTATTTCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222736" ref_strand="+" ref_description="SGN-E222736 [cLEL-16-M11](-)">
      <seq>gcttcgtgaccctgctgaaaagaaccattatgctgcacgagatcctatcagtgcctgaagaagtatatgtttgagaacaatctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgtcgaatttgcggatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgacggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatcaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatcactatgaacaacaaaatctatttcaaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18749" stop="17643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18446" g_stop="17944" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="517" r_length="503" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="530"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E222736" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18446" e_stop="17944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTAT-ATTATGAACAACAAAATCTATTTCAAACACACA</genome_strand>
        <mrna_strand>CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCC-TGAAGAAGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATCACTATGAACAACAAAATCTATTTCAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222308" ref_strand="+" ref_description="SGN-E222308 [cLEL-16-M11](-)">
      <seq>ctttggcattgggcctgacggaaggtacagatgtgaagatcccaagttctccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatcaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatgaacaacaaaatctatttccaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18541" stop="17643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18241" g_stop="17944" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="311"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E222308" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18241" e_stop="17944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACA</genome_strand>
        <mrna_strand>CTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCTCCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCCAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284711" ref_strand="+" ref_description="SGN-E284711 [cLES-3-B12]">
      <seq>gagaacaatctggcaagtgaagcagagttgaaggccattgataagaagattgatgaactggttgaagaagctgtcgaatttgcggatgaaagccctcatcctgttcgtagccagctgctcgagaacgtgtttgctgatccaaagggctttggcattgggcctgacggaaggtacagatgtgaagatcccaagttcaccgaaggcactgctcatgtctaggtctcaaggcacattcagtaatcaataatatcaggttctaagttactgaattagtgattgccaattatacttctatataaaggtctggaagtcctccttattaggaagtttggtacaaaggtactttattatttcaattttagttcaaaattttgttgttattagtttcacattgttttcaagttgtactatattatgaacaacaaaatctatttcaaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="18687" stop="17645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18387" g_stop="17945" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E284711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18387" e_stop="17945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACAC</genome_strand>
        <mrna_strand>GAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443893" ref_strand="+" ref_description="SGN-E443893 [cSTA-40-H21]">
      <seq>gggctgcaggaattcggcacgaggtctaaaaaagaggacttaacgctatgcgggcaaggaaagaaccctgcaggaggtttatgcggggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttgggtttggcagccaatcctctaattttcagaatacgaatatgcagcagacaaagtccaaccctttcggttttggtgttcagagcaactcccagccaagagggtccagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22208" stop="26016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22514" g_stop="22577" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="91" r_length="64" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="296" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25716" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="384" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E443893" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22514" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACA</genome_strand>
        <mrna_strand>AAAAAAGAGGACTTAACGCTATGCGGGCAAGGAAAGAACCCTGCAGGAGGTTTATGCGGGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGGTTTGGCAGCCAATCCTCTAATTTTCAGAATACGAATATGCAGCAGACAAAGTCCAACCCTTTCGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGGTCCAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310425" ref_strand="+" ref_description="SGN-E310425 [cTOA-10-E18]">
      <seq>aaaaaggacttaactctatgcctccaaggaaagaaccctgcagaaattttatgcgtggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttggatttggcagtcaatccactaattttcagagtacaaatatgcagcagacaaagtccaacccttttggttttggtgttcagagcaactcccagccaagaggttctagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcaacctgtggcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccttgtgatattactggcgatgttagctatgaagagctgcgagcagtagcatacgatgatgcgaaacgtggacagagcttgatgtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22217" stop="27302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22517" g_stop="22577" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="266" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="451" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="545" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E310425" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22517" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT</genome_strand>
        <mrna_strand>AAAAAGGACTTAACTCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAACCTGTGGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCTTGTGATATTACTGGCGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600915" ref_strand="+" ref_description="SGN-E600915 [53937]">
      <seq>aagaggacttaacgctatgcctccaaggaaagaaccctgcaggaattttatgcggggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttgggtttggcagccaatcctctaattttcagaatacgaatatgcagcagacaaagtccaaccctttcggttttggtgttcagagcaactcccagccaagagggtccagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaaaccattgtggcttcttacctgctatggtcatcgtaaaaacggtccatgtgatattactggtgatgttagctatgaagagctgcgagcagcagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagagagagaggagcctagttaattctaaagtagctgaatttgaaaatctattgcgaaatccttatgcatctacatcaacttctgctcctaatgctcaaaagtccttttcctggtggcataccaagtgcctcattgagtgctccaagtccttttcctggtgccgcaccaagtgcctcaagtccttttccaggtggcctacatgtgagtgctccaaagtcccttttcctggtgctgcaccaaaatgcatttgtcgaagtgctccaaagcagtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22219" stop="27896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22518" g_stop="22577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="265" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="354" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="450" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="544" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27317" g_stop="27514" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="743" r_length="199" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E600915" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22518" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTC-AAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCC</genome_strand>
        <mrna_strand>AAGAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGGAATTTTATGCGGGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGGTTTGGCAGCCAATCCTCTAATTTTCAGAATACGAATATGCAGCAGACAAAGTCCAACCCTTTCGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGGTCCAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAACCATTGTGGCTTCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCCATGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGCAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAGAGAGAGGAGCCTAGTTAATTCTAAAGTAGCTGAATTTGAAAATCTATTGCGAAATCCTTATGCATCTACATCAACTTCTGCTCCTAATGCTCAAAAGTCCTTTTCCTGGTGGCATACCAAGTGCCTCATTGAGTGCTCCAAGTCCTTTTCCTGGTGCCGCACCAAGTGCCTCAAGTCCTTTTCCAGGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603066" ref_strand="+" ref_description="SGN-E603066 [56146]">
      <seq>aagaggacttaacgctatgcctccaaggaaagaaccctgcaggaattttatgcggggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttgggtttggcagccaatcctctaattttcagaatacgaatatgcagcagacaaagtccaaccctttcggttttggtgttcagagcaactcccagccaagagggtccagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaaataatgagaaaccattgtggcttcttacctgctatggtcatcgtaaaaacggtccatgtgatattactggtgatgttagctatgaagagctgcgaacagcaagcatacgatgatgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22219" stop="27277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22518" g_stop="22577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="265" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="354" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="451" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26909" g_stop="26977" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="521" r_length="70" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E603066" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22518" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="26977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTT-AATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAG-TAGCATACGATGATGCGAA</genome_strand>
        <mrna_strand>AAGAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGGAATTTTATGCGGGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGGTTTGGCAGCCAATCCTCTAATTTTCAGAATACGAATATGCAGCAGACAAAGTCCAACCCTTTCGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGGTCCAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAAATAATGAGAAACCATTGTGGCTTCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCCATGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAACAGCAAGCATACGATGATGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333904" ref_strand="+" ref_description="SGN-E333904 [cTOD-24-K20]">
      <seq>atcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccttgtgatattactggtgatgttagctatgaagagctgcgagcagtagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagagagagaggagccaggttaattctaaagtagctgaattcgaaaatctattgcaaaatccttatgcatcttcatcaacttctgctcttaatgctcaaagtccttttcctggtgccacaccaagtgcctcattgagtgctcaaagtccttttcctggtgccactccaagtgcctcaagtccttttcctggcgccgcaccaaatgcctcattgagtgctcaaagtccttttcctggtgctgcaccaaatgcattgtcaagtgctcaaagcagttttcctccttcagcctcaagttttagtcagttgggaaccatactgaatacagggacatcaactccaccaactagtacatttgggcaacccagtctccctgggaactcttttaagacatcaaattcatctggggtgaatgctttttcatttgggaaacatcaacatcaggtaatttgacagggttttcgagtattatcagtcttgagtatgcgtttttatttagtagcttgactttgcttgcaggttcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="25327" stop="28594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="196" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="290" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27317" g_stop="27645" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="619" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28093" g_stop="28294" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="819" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E333904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27645"/>
          <exon e_start="28093" e_stop="28294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGGGTTAGACTGATGCATAAGAACCTGCATTAGTGCATTTATACTAGAATTTGGCTTTTTTGATAAGTTAATTTTACTGTTAGCTAAACCAAAATCAATTAGTAATGAGCTAATAAAATCTATCGTAGCAACATCTTCATAACATGATTTAATTTACATCCAACAAGCCAGTAAGCTAAGAGATTTACATTTCATCATGTAGATAGCTGCAGCTTTTCCTTCAAACCACAGCTGGTCTCTTTGCTTGCAGACCGTCCATAATATGAAGATTGGAATTTTCTTCCAAATCTTTCTCAGTTCCTTTTTTATATAACATCCAGCACTGAAGTTCTTTAATCGTCTTTGGTAGAAATATTATTTTTCTCACACATGTAGTTTCTACCATAAATCTGCATATGCTAGAATTTTGGCTATTACCAGCTTCTGACTTCATTTTTTTCAAATTAACAGGACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGGAATACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAGTTCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</genome_strand>
        <mrna_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGGAA-ACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAG-TCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333727" ref_strand="+" ref_description="SGN-E333727 [cTOD-22-A12]">
      <seq>atcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccttgtgatattactggtgatgttagctatgaagagctgcgagcagtagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagagagagaggagccaggttaattctaaagtagctgaattcgaaaatctattgcaaaatccttatgcatcttcatcaacttctgctcttaatgctcaaagtccttttcctggtgccacaccaagtgcctcattgagtgctcaaagtccttttcctggtgccactccaagtgcctcaagtccttttcctggcgccgcaccaaatgcctcattgagtgctcaaagtccttttcctggtgctgcaccaaatgcattgtcaagtgctcaaagcagttttcctccttcagcctcaagttttagtcagttgggaaccatactgaatacagggacatcaactccaccaactagtacatttgggcaacccagtctccctgggaactcttttaagacatcaaattcatctggggtggatgctttttcatttgggaaatacatcacatcaggtaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="25327" stop="28516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="196" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="290" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27317" g_stop="27645" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="619" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28093" g_stop="28216" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="743" r_length="124" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E333727" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27645"/>
          <exon e_start="28093" e_stop="28216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGGGTTAGACTGATGCATAAGAACCTGCATTAGTGCATTTATACTAGAATTTGGCTTTTTTGATAAGTTAATTTTACTGTTAGCTAAACCAAAATCAATTAGTAATGAGCTAATAAAATCTATCGTAGCAACATCTTCATAACATGATTTAATTTACATCCAACAAGCCAGTAAGCTAAGAGATTTACATTTCATCATGTAGATAGCTGCAGCTTTTCCTTCAAACCACAGCTGGTCTCTTTGCTTGCAGACCGTCCATAATATGAAGATTGGAATTTTCTTCCAAATCTTTCTCAGTTCCTTTTTTATATAACATCCAGCACTGAAGTTCTTTAATCGTCTTTGGTAGAAATATTATTTTTCTCACACATGTAGTTTCTACCATAAATCTGCATATGCTAGAATTTTGGCTATTACCAGCTTCTGACTTCATTTTTTTCAAATTAACAGGACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGG-AATACATCAACATCAGGTAATTTG</genome_strand>
        <mrna_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGGATGCTTTTTCATTTGGGAAATACATC-ACATCAGGTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333190" ref_strand="+" ref_description="SGN-E333190 [cTOD-20-E19]">
      <seq>atcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccttgtgatattactggtgatgttagctatgaagagctgcgagcagtagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagagagagaggagccaggttaattctaaagtagctgaattcgaaaatctattgcaaaatccttatgcatcttcatcaacttctgctcttaatgctcaaagtccttttcctggtgccacaccaagtgcctcattgagtgctcaaagtccttttcctggtgccactccaagtgcctcaagtccttttcctggcgccgcaccaaatgcctcattgagtgctcaaagtccttttcctggtgctgcaccaaatgcattgtcaagtgctcaaagcagttttcctccttcagcctcaagttttagtcagttgggaaccatactgaatacagggacatcaactccaccaactagtacatttgggcaacccagtctccctgggaactcttttaagacatcaaattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="25327" stop="28467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="196" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="290" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27317" g_stop="27645" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="619" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28093" g_stop="28167" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="694" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E333190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27645"/>
          <exon e_start="28093" e_stop="28167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGGGTTAGACTGATGCATAAGAACCTGCATTAGTGCATTTATACTAGAATTTGGCTTTTTTGATAAGTTAATTTTACTGTTAGCTAAACCAAAATCAATTAGTAATGAGCTAATAAAATCTATCGTAGCAACATCTTCATAACATGATTTAATTTACATCCAACAAGCCAGTAAGCTAAGAGATTTACATTTCATCATGTAGATAGCTGCAGCTTTTCCTTCAAACCACAGCTGGTCTCTTTGCTTGCAGACCGTCCATAATATGAAGATTGGAATTTTCTTCCAAATCTTTCTCAGTTCCTTTTTTATATAACATCCAGCACTGAAGTTCTTTAATCGTCTTTGGTAGAAATATTATTTTTCTCACACATGTAGTTTCTACCATAAATCTGCATATGCTAGAATTTTGGCTATTACCAGCTTCTGACTTCATTTTTTTCAAATTAACAGGACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATC</genome_strand>
        <mrna_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471614" ref_strand="+" ref_description="SGN-E471614 [cSTB-24-J19]">
      <seq>caatacaagccttttgaaaacaagtggactcgctctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccatgtgatattattggtgatgttagctatgaagagctgcgagcagcagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagaagagagaggagcctggttaattctaaagtagctgaatttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="25327" stop="27666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="98" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="194" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="288" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27317" g_stop="27366" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="339" r_length="51" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E471614" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAG-AGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAA</genome_strand>
        <mrna_strand>CCTTTTGAAAACAAGTGGACTCGCTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCATGTGATATTATTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGCAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAAGAGAGAGGAGCCTGGTTAATTCTAAAGTAGCTGAATTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554821" ref_strand="+" ref_description="SGN-E554821 [cTSC-5-I18]">
      <seq>ttcagtactgcgattcctagggtttaggccggagaggacgactgaagaagatgaagccggtagtaggaacagtagtgtctaacaagatgcataaatcagtagtggtggcagtggatagactcttccacaacaaggtttacaatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaataaaaaaaaatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31921" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31621" g_stop="31410" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29470" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="574" r_length="362" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E554821" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31621" e_stop="31410"/>
          <exon e_start="29831" e_stop="29470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAATATCAGTTATTCCTGG</genome_strand>
        <mrna_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACTGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCATAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAATAAAAAAAAATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552334" ref_strand="+" ref_description="SGN-E552334 [cTSB-3-J18]">
      <seq>ttcagtactgcgattcctagggtttaggccggagaggacgacggaagaagatgaagccggtagtaggaacagtagtgtctaacaagatgcagaaatcagtagtggtggcagtggatagactcttccacaacaaggtttacaatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31921" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31621" g_stop="31410" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29485" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="559" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="573"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E552334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31621" e_stop="31410"/>
          <exon e_start="29831" e_stop="29485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAAT</genome_strand>
        <mrna_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556318" ref_strand="+" ref_description="SGN-E556318 [cTSD-3-B3]">
      <seq>ttcagtactgcgattcctagggtttaggccggagaggacgacggaagaagatgaagccggtagtaggaacagtagtgtctaacaagatgcagaaatcagtagtggtggcagtggatagactcttccacaacaaggtttacaatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31921" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31621" g_stop="31410" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29485" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="559" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="573"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E556318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31621" e_stop="31410"/>
          <exon e_start="29831" e_stop="29485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAAT</genome_strand>
        <mrna_strand>TTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716321" ref_strand="+" ref_description="SGN-E716321 [FB16CH09]">
      <seq>ggaagttcaaattcagtactgcgattcctagggtttaggccggagaggacgacggaagaagatgaagccggtagtaggaacagtagtgtctaacaagatgcagaaatcagtagtggtggcagtggatagactcttccacaacaaggtttacaatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31932" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31632" g_stop="31410" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29487" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="568" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="594"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E716321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31632" e_stop="31410"/>
          <exon e_start="29831" e_stop="29487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCAAATTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</genome_strand>
        <mrna_strand>GGAAGTTCAAATTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555003" ref_strand="+" ref_description="SGN-E555003 [cTSC-6-B4]">
      <seq>aatagatctgtcaaacggacctccaaattctcggctcatgatgacgaagacgaatgacgcttcggatgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31781" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31481" g_stop="31410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="0.82"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29487" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="418" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="441"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E555003" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31481" e_stop="31410"/>
          <exon e_start="29831" e_stop="29487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGG-TGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</genome_strand>
        <mrna_strand>AATAGATCTGTCAAACGGACCTCCAAATTCTCGGCTCATGATGACGAAGACGAATGACGCTTCGGATGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553320" ref_strand="+" ref_description="SGN-E553320 [cTSB-4-K19]">
      <seq>aatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttagttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31781" stop="29184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31481" g_stop="31410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29487" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="417" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="440"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E553320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31481" e_stop="31410"/>
          <exon e_start="29831" e_stop="29487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</genome_strand>
        <mrna_strand>AATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221467" ref_strand="+" ref_description="SGN-E221467 [cLEL-10-K14](-)">
      <seq>aaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31769" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31469" g_stop="31410" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29492" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="400" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="419"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E221467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31469" e_stop="31410"/>
          <exon e_start="29831" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>AAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230613" ref_strand="+" ref_description="SGN-E230613 [cLEL-35-H16](-)">
      <seq>aaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31757" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31457" g_stop="31410" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29492" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="388" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="407"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E230613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31457" e_stop="31410"/>
          <exon e_start="29831" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>AAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217984" ref_strand="+" ref_description="SGN-E217984 [cLEL-23-D17](-)">
      <seq>catggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31752" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31452" g_stop="31410" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29492" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="383" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="402"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E217984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31452" e_stop="31410"/>
          <exon e_start="29831" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>CATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218060" ref_strand="+" ref_description="SGN-E218060 [cLEL-23-D17](-)">
      <seq>catggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31752" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31452" g_stop="31410" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29492" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="383" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="402"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E218060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31452" e_stop="31410"/>
          <exon e_start="29831" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>CATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230875" ref_strand="+" ref_description="SGN-E230875 [cLEL-35-B12](-)">
      <seq>tttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="30072" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29772" g_stop="29492" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="282" polyA_stop="298"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E230875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29772" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>TTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222033" ref_strand="+" ref_description="SGN-E222033 [cLEL-10-K14](-)">
      <seq>cccctaatgctagttagagctgaaaaagaattactatctcaatctttgtcttgtgaatccagaacaaaatgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtttctactcaacctcctcgatcagtgcaattagattaccattttattcctgcactcaataaaaaaaatttatcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="29997" stop="29192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29697" g_stop="29492" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="225"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E222033" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29697" e_stop="29492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</genome_strand>
        <mrna_strand>CCCCTAATGCTAGTTAGAGCTGAAAAAGAATTACTATCTCAATCTTTGTCTTGTGAATCCAGAACAAAATGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240319" ref_strand="+" ref_description="SGN-E240319 [cLED-25-K13]">
      <seq>cgattcctatggtttaggccggagaggacgacggaagaagatgaagccggtagtaggaacagtagtgtctaacaagatgcagaaatcagtagtggtggcagtggatagactcttccacaacaaggtttacaatcgatatgtcaaacggacctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttaccactgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaacaagtactgctcactgctcagaaacgtagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31911" stop="29268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31611" g_stop="31410" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29568" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="466" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E240319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31611" e_stop="31410"/>
          <exon e_start="29831" e_stop="29568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTT</genome_strand>
        <mrna_strand>CGATTCCTATGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217209" ref_strand="+" ref_description="SGN-E217209 [cLEL-21-E23](-)">
      <seq>ggtagtaggtacagtagtgtctaacaagatgcagaaatcagtagtggtggcagtggatagactcttccacaacaaggtttacactcgatatgtcaaacgggcctcccaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccgctgagcaagcgccagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgcctcgagttaccactgagagggtcaacaagactcaagtgtcggccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcctgtgtatccagaacaaattgcctattaactgttaacttttgtgaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31863" stop="29298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31563" g_stop="31410" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.262" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29598" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="388" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="399"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E217209" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31563" e_stop="31410"/>
          <exon e_start="29831" e_stop="29598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAA</genome_strand>
        <mrna_strand>GGTAGTAGGTACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACACTCGATATGTCAAACGGGCCTCCCAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCGCTGAGCAAGCGCCAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCTCGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCGGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCCTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217295" ref_strand="+" ref_description="SGN-E217295 [cLEL-21-E11](-)">
      <seq>ggtttacaatcgatatgtcaaacggaccctccaaattcatggctcatgatgacaaagacgaatgcaacatcggtgaccgcgttaagttggatcattcaagaccactgagcaagcgcaagcactgggttgtagctgaaattttgaaaagagcaagaatttatgtgcctccgccacgagttacccctgagagggtcaacaagactcaagtgtctgccccctaatgctagttagagctgaaagagaattactatctcaatctttgtcttgtgtatccagaacaaattgcctattaactgttaacttttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="31788" stop="29298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31488" g_stop="31410" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29831" g_stop="29598" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="314" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="325"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E217295" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31488" e_stop="31410"/>
          <exon e_start="29831" e_stop="29598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTACAATCGATATGTCAAACGGA-CCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGCGTAAATACTCTCTCTCTCTATTGTGATTTGGGAAAAAATGGTCCTTTTTCAAGTTTGCTGATGATTTTGTTTTTGATTATAAGCAATTAATTGGCTTCAAAATAATTGTTTGTATAATTGATGAAACAAAAAAGCACCCAAATTTACCCATTACCTAGCCTAGTTATAGATATAGAGATTCATTTGTGTTTAGTTGTGATCTGTTTGTGTTGTAGAATTAGGTGAAAAATGTTATATTGATCTGTATTTTTTAATTATGATTTCGTTAACTTGCAAATGGCGTCAAAATACATGTTTGTTCCTGTGTAAACTAATGAAACACCTAAAATTACTCATACAGATACACATTATAGAGATACATTTCATTTTCCTAATTCTTCGTTTGCCTCTCCCTTTCTGGTAATCTGGATGTAGGTACCATTAGTTGGGTAAAGATTGGTCTTTTTTTAGTGATGTTGCTAATGGTTATTCAAGTGTATTAGGTTTTGAGCTTGTAGATTAGCTATGAGACTCCGAAGTAATTGTTTGTTTTAATGAAGAACAAAGAAGCACCTAAAATAGCATATCTAAACTCATTGTGGAGCTTCTTTTCCAAATTCGTAGTTGACGATGTGTTCTCTTATCTTCTATGCTTGTAATCTGTTTTTTAGTACGTGAAGTGGGTGAGTCATCGTCATTGTTCAGTTCAAAATTTTGTCAATGATGTTATTTCCCGCACCCATGGGGGTTAGTTTATGTTCAGTAAAGTGGGTTGGGTACCATGAGGTCTCCGGATCAGTCACAAGCAAAGGCAAAATCACCAAGTGATTTCTTCCAGTGTGTCCTAGCCGTGCTGGACAGAGTACTTGTGTTGATGGGTGGTAGAAGGTACTATGTGGAACTAGATGATGCGTGGTCAAACACATACACCATGATTATAAAAAAAGAAATGATGTTATTAATAATGCTATTTCCTGGTTGCAACTTTGTATATAGAAGGGGGTTTCATGGTTAGTGTATAGTCTTATAGCCTTTGAAGACCACAATTAATTTGGAATTGTATTGTGGTTGACTGATGTGTTCTTCTAATGGAATTTCTGATTATATTACACCTTAAGTTATACAAGACAAGAGAAAAAGGTAAACTTTCCCTCTGAATACTAGCACGTGTGAATTACATTTCTTATCTCGAGTATGAGGAAGAAGGAGAGTGGTGAGATGGAAGCCATGTGCATAATTTTAGTTCAGATTTGGTAAATTCCGAGTATAGATGATGTATATATTTGCTTCATGTCATTAAAGGTTCTTTTGCTTTTTCCCGGTCAAATCATAATAAAATTTACTACTATAGCTGCGGTATATGCAACTGAACTGATATGTTAAGATGGTTTACTTTAATCCTTTAGTGTCATAGCAATGGAACTTTCAATAGTATTCCGTTGTATCTGACAGTCGTTCTTGTAACTTCCTGCCTCTTATTTAAGATCAATACTACTGAATTTTTGTACAGTTGTGAATGTTGTTGAAGCTTATTAGTGATGATTTAAGATTATAATTGGGGAACAAGATATTGAGTTGGGGATGAAATTCCGATTTCAGGTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAA</genome_strand>
        <mrna_strand>GGTTTACAATCGATATGTCAAACGGACCCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCCCTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301169" ref_strand="+" ref_description="SGN-E301169 [cLEW-22-D21]">
      <seq>agagagagagtttttggtatccgaggcttcgagggttgagagaagaagacgtacaatggtcgatagatagtttggtggtaactaagaatatggtggttcgagctgaaaaggtcccttatctagtatttgctggactaagaggaactaggccatacgcccccggtcgagtgctgaggcaactaggagggaagcaagagttgccccagattgctgatatgaggaaattcgtaactgaccacgagaatgggcgagtggcattttccgaagacatgcgtaggatgtggagatctcgaagagtgttgggtgagcctgtaccagataggtttcgtccagaatgttcgagggagtacaaagaatggttgaaaaagagtctcgctggaacaattgagcctggtccaaacgttcctcacattattgccgatgttggagccaaacatcaagtccgacttcaccgccttcaagagaagtttgataagagtgaattagagcatcaacgtcgtcattccgaagatgccaaagtcatagctcgattgaaacaagaactgcgaagggccagacaatgcatgacagagttagatgatagcatggagcgacagatttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="37365" stop="38567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37663" g_stop="38267" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E301169" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37663" e_stop="38267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCACTTATTTGGTATTTGCTGGGTTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATAGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGCTCGAGCGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTCATTC</genome_strand>
        <mrna_strand>AGA-GAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCCCTTATCTAGTATTTGCTGGACTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATGGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGTTCGAGGGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542556" ref_strand="+" ref_description="SGN-E542556 [TUS-63-O19]">
      <seq>gagagagagagtttttggtatccgaggcttcgagggttgagagaagaagacgtacaatggtcgatagatagtttggtggtaactaagaatatggtggttcgagctgaaaaggtcccttatctagtatttgctggactaagaggaactaggccatacgcccccggtcgagtgctgaggcaactaggagggaagcaagagttgccccagattgctgatatgaggaaattcgtaactgaccacgagaatgggcgagtggcattttccgaagacatgcgtaggatgtggagatctcgaagagtgttgggtgagcctgtaccagataggtttcgtccagaatgttcgagggagtacaaagaatggttgaaaaagagtctcgctggaacaattgagcctggtccaaacgttcctcacattattgccgatgttggagccaaacatcaagtccgacttcaccgccttcaagagaagtttgataagagtgaattagagcatcaacgtcgtcattccgaagatgccaaagtcatagctcgattgaaacaagaactgcgaagggccagacaatgcatgacagagttagatgatagcatggagcgacagatttaatcgatagaggggttcagtcatcaagaaggagctcgattggcaagagatcatctctgggcgaatagatatgccatgtgggaagaggtcaacatcgccaagaggaccagacttggcgaaagatcagaggaggcatgatttttaccatcccctgcgtgggacagttttatttgtactttgttttgtaatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="37364" stop="38758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37664" g_stop="38458" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E542556" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37664" e_stop="38458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAG-GAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCACTTATTTGGTATTTGCTGGGTTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATAGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGCTCGAGCGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTCATTCGATAGAGGGGTTCAGTCATCAAGAAGGAGCTCGATTGGCAAGAGATCATCTCTGGGCGAATAGATATGCCATGTGGGAAGAGGTCAACATCGCCAAGAGGACCAGACTTGGCGAAGGATCAGAGGAGGCATGATTTTTACCATCCCCTGCGTGGGACAGTTTTATTTGTACTTTGTTTTGTAATTTATTTT</genome_strand>
        <mrna_strand>GAGAGAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCCCTTATCTAGTATTTGCTGGACTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATGGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGTTCGAGGGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTTAATCGATAGAGGGGTTCAGTCATCAAGAAGGAGCTCGATTGGCAAGAGATCATCTCTGGGCGAATAGATATGCCATGTGGGAAGAGGTCAACATCGCCAAGAGGACCAGACTTGGCGAAAGATCAGAGGAGGCATGATTTTTACCATCCCCTGCGTGGGACAGTTTTATTTGTACTTTGTTTTGTAATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542553" ref_strand="+" ref_description="SGN-E542553 [TUS-63-O19](-)">
      <seq>agagagagtttttggtatccgaggcttcgagggttgagagaagaagacgtacaatggtcgatagatagttggtggtaactaagaatatggtggttcgagctgaaaaggtcccttatctagtatttgctggactaagaggaactaggccatacgcccccggtcgagtgctgaggcaactaggagggaagcaagagttgccccagattgctgatatgaggaaattcgtaactgaccacgagaatgggcgagtggcattttccgaagacatgcgtaggatgtggagatctcgaagagtgttgggtgagcctgtaccagataggtttcgtccagaatgttcgagggagtacaaagaatggttgaaaaagagtctcgctggaacaattgagcctggtccaaacgttcctcacattattgccgatgttggagccaaacatcaagtccgacttcaccgccttcaagagaagtttgataagagtgaattagagcatcaacgtcgtcattccgaagatgccaaagtcatagctcgattgaaacaagaactgcgaagggccagacaatgcatgacagagttagatgatagcatggagcgacagatttaatcgatagaggggttcagtcatcaagaaggagctcgattggcaagagatcatctctgggcgaatagatatgccatgtgggaagaggtcaacatcgccaagaggaccagacttggcgaaggatcagaggaggcatgatttttaccatcccctgcgtgggacagttttatttgtactttgttttgtaatttatttttcaggactattttctgttttatgttatcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="37367" stop="38792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37666" g_stop="38499" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E542553" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37666" e_stop="38499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCACTTATTTGGTATTTGCTGGGTTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATAGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGCTCGAGCGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTCATTCGATAGAGGGGTTCAGTCATCAAGAAGGAGCTCGATTGGCAAGAGATCATCTCTGGGCGAATAGATATGCCATGTGGGAAGAGGTCAACATCGCCAAGAGGACCAGACTTGGCGAAGGATCAGAGGAGGCATGATTTTTACCATCCCCTGCGTGGGACAGTTTTATTTGTACTTTGTTTTGTAATTTATTTTTCAGGACTATTTTCTATTTTATGTTTATCAGACATTTTGGA</genome_strand>
        <mrna_strand>AGAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAG-TTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCCCTTATCTAGTATTTGCTGGACTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATGGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGTTCGAGGGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTTAATCGATAGAGGGGTTCAGTCATCAAGAAGGAGCTCGATTGGCAAGAGATCATCTCTGGGCGAATAGATATGCCATGTGGGAAGAGGTCAACATCGCCAAGAGGACCAGACTTGGCGAAGGATCAGAGGAGGCATGATTTTTACCATCCCCTGCGTGGGACAGTTTTATTTGTACTTTGTTTTGTAATTTATTTTTCAGGACTATTTTCTGTTTTATG-TTATCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="62522" stop="63275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62822" g_stop="62967" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62822" e_stop="62967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATCTTTAGAAGGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCTATCCTAAAGTTGAAACCGAGTTGAAACCGGTAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCG-GTAGGCA-GAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="62522" stop="63275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62822" g_stop="62967" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62822" e_stop="62967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATCTTTAGAAGGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCTATCCTAAAGTTGAAACCGAGTTGAAACCGGTAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCG-GTAGGCA-GAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="62522" stop="63275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62822" g_stop="62967" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62822" e_stop="62967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATCTTTAGAAGGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCTATCCTAAAGTTGAAACCGAGTTGAAACCGGTAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCG-GTAGGCA-GAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578125" ref_strand="+" ref_description="SGN-E578125 [LE08ED10]">
      <seq>aaaattagaaataaacacaggagatatgaatagacccagtacgtcaagagttaaaaccccagataatagtcccagaaatagtcctagagctagtcctagatggacaccacctacttattatacagaaagttatcaacaatcagatagaaataatgcaatatggaacagtaaattaaataaaaattggataccaaaaccaataagtaaacaatataatttcttagatctagattgtgtcacagacataaataaagcaatattactatggtcaggaaatatatctaaacagttaatagataacaaaatagaaacaacaaaaacaccgagatgcatagaaagaacattcgtaggaacaacaaaattatggatagaaaatctaccccagaaagcttagaagtacttagaagtgataagaaaatggatggatccccatcagcaacaaatatagaaatattagataaatacgaatcagcaataagaaatgaatttggaggtatgaccacagatataaaagaacaaaacagagaaaaaataataaacagacaacttatgacaaaattatctatatgtaaaatgtgttacattgaacaatatacttgtgcatttaaagaatagtactacaaatcaaaatataatttagatgaagcaagagagataagacaacaatattttacaaaattaccagaaccatttagcacaaaataattaaagattgggataacgaagggatagtagatactttaggagctagaataaattcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="64222" stop="65588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64522" g_stop="65288" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E578125" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64522" e_stop="65288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGAAATAAACACAGGAGATATGAATAGACCTAGTACGTCAAGAGTTAAAACTCCAGATAATAGTCCCAAAAATAGTCCTAGAGCTAGTCCTAGATGGACACCACCAACTTATTATACAGAAAGTTATCAGCAATCAGATAGAACTAACGCAATATGGAACAATAGATTAAATAAGAATTGGACACCAAAATCAATAAATGAACAATATAATTTTTTAGATCTAGATTGTGTTACAGACATAAATAAAGCAATATTAATGTGGATAGGAAATATATCTAAGCAACGAATAGATAACAAAATAGAAACAACAAAAACACCGAGATACATAGAAAGAACATTCGTAGGAACAACAAGATTATGGATAGAAAATCTACCCTCAGAAAGTTTAGAAGTACTTAGAAGTGACAAGAAAATAGATGGATCTCCATCAGCAACAAATATAGATATACTAGATAAATATGAGTCAGCAATAAGAAATGAATTTGGAGGTATGACTACAGATATAAGAGAACAAAACAGAGAAAAAATAATAAATAGACAACTTATGACAAAATTAGCTATATGTAAAATGTGTTATATAGAAGAATACACTTGTGCATTTAAAGAATATTATTACAAAGCAAAATACAATTTTGATGAAGCAAAAGAAATAAGAAAACAATATTTTACGAAATTACCAGAGTCATTTAGTACAAAAGTAATAAAAGATTGGAATGATGAAGGATTAGTAGATACCTTAGGAGCTAGAATAAAATTCCTAT</genome_strand>
        <mrna_strand>AAAATTAGAAATAAACACAGGAGATATGAATAGACCCAGTACGTCAAGAGTTAAAACCCCAGATAATAGTCCCAGAAATAGTCCTAGAGCTAGTCCTAGATGGACACCACCTACTTATTATACAGAAAGTTATCAACAATCAGATAGAAATAATGCAATATGGAACAGTAAATTAAATAAAAATTGGATACCAAAACCAATAAGTAAACAATATAATTTCTTAGATCTAGATTGTGTCACAGACATAAATAAAGCAATATTACTATGGTCAGGAAATATATCTAAACAGTTAATAGATAACAAAATAGAAACAACAAAAACACCGAGATGCATAGAAAGAACATTCGTAGGAACAACAAAATTATGGATAGAAAATCTACCC-CAGAAAGCTTAGAAGTACTTAGAAGTGATAAGAAAATGGATGGATCCCCATCAGCAACAAATATAGAAATATTAGATAAATACGAATCAGCAATAAGAAATGAATTTGGAGGTATGACCACAGATATAAAAGAACAAAACAGAGAAAAAATAATAAACAGACAACTTATGACAAAATTATCTATATGTAAAATGTGTTACATTGAACAATATACTTGTGCATTTAAAGAATAGTACTACAAATCAAAATATAATTTAGATGAAGCAAGAGAGATAAGACAACAATATTTTACAAAATTACCAGAACCATTTAGCACAAAA-TAATTAAAGATTGGGATAACGAAGGGATAGTAGATACTTTAGGAGCTAGAAT-AAATTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207232" ref_strand="+" ref_description="SGN-E207232 [cLEC-30-D20]">
      <seq>ccagaagttacaaggatataacatacttatagcacaacccaaaactagtccaaatttagttaaaacatgttatagctatggactactaaatgcagtatatacatacgacggagaagaaataattggaataccagaattacataaagcatttatgacatataaaagaattactaaaggaaacctattttttataaaattctatacagcaccagcagaaatattatacgaggagataaagtctccaatacaagttataaagataggcctgactagagatatgattataccagaagagatagaaaaacaagctgagataccaaagatagagataccgggcttttatgcgaataaaagaataattggaatagcaacaattgtacaagagttagccaataattatttgaatggcaatgctatttggagttattatgcacgagatcaagtaatgatttattctaattccaaagagctaaggaaatcagatatggatgaagtccagcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="69108" stop="70211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69408" g_stop="69911" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E207232" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69408" e_stop="69911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAGTTATAGGGATATAACAAACTTATAGCACAACCTAAAACCAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATACAGTATATACATATACCGAAGAAGAAATAATTGGAATACCGGAATTACATAGAGCATTTGTGACATATAAGAGAATTACTAAAGGAAACCTATTTTATATAAAATTCTATACAGCACCAGCTGAGATATTATACGAGGAGATAAAGTCGCCAATACAAGTTGTAAAGATAGGCCTGACCAGAGATATGATTATACCGGAAGAGATAGAGAAACAAATCAAGATATCAAAGATAGAAATACCAAACTTTTATGCGAATAAAAGAATAATTGGAATAGCAACAATTATACAAGAGTTATCCAATAATTATTTAAATGGCAATGCTATTTGGAGTTATTATGCACGAGATCAAGTAATGATTTATTCGAACTCCAAAGAGCTAAGGAAATCAGATATGGATGAAGTCCAGCGATG</genome_strand>
        <mrna_strand>CCAGAAGTTACAAGGATATAACATACTTATAGCACAACCCAAAACTAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATGCAGTATATACATACGACGGAGAAGAAATAATTGGAATACCAGAATTACATAAAGCATTTATGACATATAAAAGAATTACTAAAGGAAACCTATTTTTTATAAAATTCTATACAGCACCAGCAGAAATATTATACGAGGAGATAAAGTCTCCAATACAAGTTATAAAGATAGGCCTGACTAGAGATATGATTATACCAGAAGAGATAGAAAAACAAGCTGAGATACCAAAGATAGAGATACCGGGCTTTTATGCGAATAAAAGAATAATTGGAATAGCAACAATTGTACAAGAGTTAGCCAATAATTATTTGAATGGCAATGCTATTTGGAGTTATTATGCACGAGATCAAGTAATGATTTATTCTAATTCCAAAGAGCTAAGGAAATCAGATATGGATGAAGTCCAGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391760" ref_strand="+" ref_description="SGN-E391760 [TUS-24-I16](-)">
      <seq>cctttccagaacatgactgctgtgcagggtgcttttgctgttgtcaacaaaggggtccgtccaacaatccccattgattgtttgcctgttttttctgatatcatgacctgctggtgggattttgaccccaataataggccaactttttttcaggttgtcaagatgcttgaggcagctgagacagaaatcatgaccaatatccgaaaggcacgtttcaggtgctgcattcatcctaccggttcaggttgattcgggaaagaggaaactggaggcaaaaaaaatgttgaatggtaaaaatgattttgagtttgccatgtgtatttttttggcacaattttttttcagatagaaaaagggttataattatgagaaaaaactaaacatttttcctgtattttgtattttttccttaaaaccgtggatttaagacagcgactcgttgttatattcaggatatttgatgtgcatttatgcatgtcagattttggctttgtttgctgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="73386" stop="72286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73086" g_stop="72587" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="521"/>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E391760" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73086" e_stop="72587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCCAGAACATGACTGCTGTGCAGGCTGCTTTTGCTGTTGTCAACAAAGGCGTCCGTCCAACAATCCCCATTGATTGTTTGCCTGTCTTATCTGATATCATGACCTGCTGCTGGGATTCTGACCCCAATAATAGGCCAACTTTCTCTCAGGTTGTCAAGATGCTTGAGGCAGCTGAGACAGAAATCATGACCAATATCAGAAAGGCACGTTTCAGGTGCTGCATTCATCCTACCGCTACAGGTTGATTCGGGAAAGAGGAAACTGGAGGCAAAAAAAATGTTGAATGGTAAAACTGATTTTGAGTCTGCCATGTGTATCTATTCGGCACAATTTCTTTTCAGATAGAAAAAGGGTTATAATTATGAGAAAAAACTAAACATTTCTCCTGTATTTTGTATCTTTTCCTTAAAACCGTGGATTTAAGACAGCGACTCGTTGTTA-ATACAGGATATCTGATGTGCATCTATGCATGTCAGATTTTGGCTTTGTTTGCTGA</genome_strand>
        <mrna_strand>CCTTTCCAGAACATGACTGCTGTGCAGGGTGCTTTTGCTGTTGTCAACAAAGGGGTCCGTCCAACAATCCCCATTGATTGTTTGCCTGTTTTTTCTGATATCATGACCTGCTGGTGGGATTTTGACCCCAATAATAGGCCAACTTTTTTTCAGGTTGTCAAGATGCTTGAGGCAGCTGAGACAGAAATCATGACCAATATCCGAAAGGCACGTTTCAGGTGCTGCATTCATCCTACCGGTTCAGGTTGATTCGGGAAAGAGGAAACTGGAGGCAAAAAAAATGTTGAATGGTAAAAATGATTTTGAGTTTGCCATGTGTATTTTTTTGGCACAATTTTTTTTCAGATAGAAAAAGGGTTATAATTATGAGAAAAAACTAAACATTTTTCCTGTATTTTGTATTTTTTCCTTAAAACCGTGGATTTAAGACAGCGACTCGTTGTTATATTCAGGATATTTGATGTGCATTTATGCATGTCAGATTTTGGCTTTGTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707083" ref_strand="+" ref_description="SGN-E707083 [FA32AA11]">
      <seq>cctgtaaacccatggtgtggtgtattgtgactgaatatgcaagagggggatcagtgcgtcagttcctcacaaggcggcaaaaccgagctgtgccattgaagttagcaattaagcaggccttacatgtggcaagggggatggagtatgtgcatggcctgaatctgattcaccgggatctgaaatcggacaatctactgattgctgctgacaagtcaatcaaaattgcagatttcggtgttgctcgaattgaggtgctgaccgaaggaatgacaccagaaactggcacttaccgctggatggctccggagatgatccagcaccggtcatacacccagaaagttgatgtttatagttttggcattgttctgtgggagctcataactgggttgcttcctttccagaacatgactgctgtgcaggctgcttttgctgttgtcaacaaaggcgtccgtccaacaatccccattgattgtttgcctgtcttatctgatatcatgacctgctgctgggattctgaccccaataataggccaactttctctcaggttgtcaagatgcttgaggcagctgagacagaaatcatgaccaatatcagaaaggcacgtttcaggtgctgcattcatcctaccgctacaggttgattcgggaaagaggaaactggaggcaaaaaaatgttgaatggtaaaactgattttgagtctgccatgtgtatctattcggcacaatttcttttcagatagaaaaagggttataattatgagaaaaaactaaacatttctcctgtattttgtatcttttccttaaaaccgtggatttaagacagcgactcgttgttaatacangatatctgatgtgcatctatgcatgtcagattttggctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="76403" stop="72295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76104" g_stop="75801" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75800" i_stop="73175" i_length="2626">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73174" g_stop="72595" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="883" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E707083" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76104" e_stop="75801"/>
          <exon e_start="73174" e_stop="72595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTAAACCCATGGTGTGGTGTATTGTGACTGAATATGCAAGAGGGGGATCAGTGCGTCAGTTCCTCACAAGGCGGCAAAACCGAGCTGTGCCATTGAAGTTAGCAATTAAGCAGGCCTTACATGTGGCAAGGGGGATGGAGTATGTGCATGGCCTGAATCTGATTCACCGGGATCTGAAATCGGACAATCTACTGATTGCTGCTGACAAGTCAATCAAAATTGCAGATTTCGGTGTTGCTCGAATTGAGGTGCTGACCGAAGGAATGACACCAGAAACTGGCACTTACCGCTGGATGGCTCCGTAAGCATCTAGACCCTTTAGCAGCCTTGTTAATCCGCTTTGATCCAGTTTGGGCTTATCGGTGAACCTTATATTAGCACTCTCTCTGTCTTCATTACTTTCGGAGTTTTATTTCTTTTTTAAAACTCCTTTGATATGTGTTACTTGAGCCAAACATCTTTCTAAAAGAACCCATCTACCTCCACGAGGGAAGGGTAACGCCTGCTCTCTCTCTACCCACCCAAGACACCACTGAGTGGGAGTTCACTGGGTATGTTGTTGTTGTTGTAGCATGCTGTATTCCCTTTATGGAACAAAATTTTTTAGAACTAAAGTGAAAAGTATGGAGGTTGATGGGTTCAAGTCCTGAATGTCCTTTTGATGGCACCTCATTGATTGTGATTATATTTTCTATTGTATACCTGCTGTTGTTGCTAAGAGGAGAAATTATTTGTTCCAGTTAGCTTTTTAACATAGTTATGTGCCTGTTAGTGAAGGTTAAAGAGTTGATCGATTTTATTTTCTCTTTCAATTTATTTCAATCCTTTTGATCTTCCTTCTTGTCCGTGATTTGTACCTTGATTCAAGTTATTCACAACCAAGGATGTGGCTTAGCTTTCAATGAAGTAGGTGCAAATCACAGAGATTTGGGTTAAATCACACAAGTAGTGCTTTATTCCCATATGCCTAAACCTTACACCTTGGTGGGTATCTATTCATATCTGTTTATTGATCCAAATAAATGGTAAAGTGCCTTAGTTGATAACTCTCAGCACCAGCCACATCATATTCCATGAACTTATCAGCCCAAAGTGATAATTAACAGGAAAAGAACTAATCTTTTAAAAAAAAGTTCTTTTTCTGTTAATAATCACTTTGGGCTGATAAGGTTCATGGAATATGACGTGGCTGGTGCTGGGAGTTGTCAACTAAGACACTTATTTATTTGGATGCATTCTCCCGATGAAGATGATAAGTTCTTCATTGCGGTGGAAATTTTGGTCTTTTAGCAGGCATCTTAGAGAAGCATGGGAGACTTTAGTTCAAATCTTAGAACAGGCACAAAAACACTAGGTGATTTCACCTGATACTTGTGTTAGTGGGGATATTGCAAGTACTTCACAAAATCATCATCGACATGCACTAGTGCTCTTCGAGGATTTCTCGATTATCAAAAAGGAAAATCTAAATAAGTTCTATTCTTAGACATAATTAAGTTTCAACACTTCTATCCCTCCAAACTTATTTATGCAGTTGTTATATTTAAGTGACTTATTAATGAATTCAAAAACAAAACTGGTTACACCATAACTCAATTGCTAGCTCTGAGTTGGAAAGAAGTTTGTTCTTTTTTGGCTGATTCCAAAAGGAATTCCAGGAGAGGCCTTACAAAAACTAGAGTCTACAACGATCATGTGATTCTCCACTGAGTTACTACATCATAAGACCATCTCAATCTCTACGGAAAGGTAGAAGTGGAATATTTCGCTCAATCTTTCATGAATCTTAATCATTTGTTGGAACCTTCGGTCATTCTTTACGAAGAGACCTCATTTTAAAAGCATAAAAAGCGTCTAGGTGATGTTCTGTAGAATCTACAATGATTATGTGGATTCTCCATTGAGTTGCTACATAAACTTGTTCCATCCATAAGATTATCTCAATTTCTACGGAAACGCAGAAGTGGAGTACTGACTCTCATGACCCTAAATCATTTGTTGTAACCTCCGAGCATTCTTCCTGGAAAGAAGTGTTTTTAAAAGCAAAAGGCGATTCGTGGAGTTTGAAGTGTAAAGCTAGGAGTGAAGCATACAAGTTATGGGTAAGTAATAAGAAGTACCAAACACATACAAATTTAGTTGTCTTCTCATGAAACTGAATCATTTTTTGAAACCTCCAATTACCGAGAGTAGTGTTTTTAGAATCGAGAAATGCAAAATGTGACAAGGTCCATGATTTTGAAGCAAAAAGAGAGAAGTGAAGCGCACTAGCTATAGGAAGTAAGTAATGCCAGACATAGAAGGATTTACTACTATAAAGATGCAATGAAATGTTGTTGAAATGCTTGCGATCAGAAAGGATTTAGGAGGTTGACCTTGTGAGTGGTGATAATTTTGGTGACCTAGTGCAGTCATGAAACACCACATCCCTGGGATGGTGGATGATGTGGCAGTGTAATATAGTTCTTCTCTGTGTGATAATAGGCTAGTATGCATGTTAGACTTTCCTTGGCGAAATAGACAGACGAATCTGTTTGCATTTGTTAATTTGACGTGATAATGAATGATCTTGCCAAAAAAGAATATGATATTGAATGATCTTTGCCAAAGCAGGTGGGGACCAGATCTAAATATCTGGTAAAACTCGTATACGTGCAGAGACTACAGCCAGTCTCTGACACTACATGCAATTCTAGTATACTCAAATTTTGATTCTGATTAACTGAGAAATGAAGTTACTTTTCAAGTTTACTCGAGAGAAATTAGTCATTCACATTCTGCAGATCCTATCCTGTTTAACAATGTGAATTTTCTGGCAAGTGTGTCTGGTTTCTTCTCTTTTCAGAAAAAAAAAACGATGTTCAAAGTTGTTAACAATAGCATCCGTGTTTCGTTGTGGACCACCAATGTTTGACTTTGTTTTGTAGGGAGATGATCCAGCACCGGTCATACACCCAGAAAGTTGATGTTTATAGTTTTGGCATTGTTCTGTGGGAGCTCATAACTGGGTTGCTTCCTTTCCAGAACATGACTGCTGTGCAGGCTGCTTTTGCTGTTGTCAACAAAGGCGTCCGTCCAACAATCCCCATTGATTGTTTGCCTGTCTTATCTGATATCATGACCTGCTGCTGGGATTCTGACCCCAATAATAGGCCAACTTTCTCTCAGGTTGTCAAGATGCTTGAGGCAGCTGAGACAGAAATCATGACCAATATCAGAAAGGCACGTTTCAGGTGCTGCATTCATCCTACCGCTACAGGTTGATTCGGGAAAGAGGAAACTGGAGGCAAAAAAAATGTTGAATGGTAAAACTGATTTTGAGTCTGCCATGTGTATCTATTCGGCACAATTTCTTTTCAGATAGAAAAAGGGTTATAATTATGAGAAAAAACTAAACATTTCTCCTGTATTTTGTATCTTTTCCTTAAAACCGTGGATTTAAGACAGCGACTCGTTGTTAATACAGGATATCTGATGTGCATCTATGCATGTCAGATTTTGGCTTTG</genome_strand>
        <mrna_strand>CCTGTAAACCCATGGTGTGGTGTATTGTGACTGAATATGCAAGAGGGGGATCAGTGCGTCAGTTCCTCACAAGGCGGCAAAACCGAGCTGTGCCATTGAAGTTAGCAATTAAGCAGGCCTTACATGTGGCAAGGGGGATGGAGTATGTGCATGGCCTGAATCTGATTCACCGGGATCTGAAATCGGACAATCTACTGATTGCTGCTGACAAGTCAATCAAAATTGCAGATTTCGGTGTTGCTCGAATTGAGGTGCTGACCGAAGGAATGACACCAGAAACTGGCACTTACCGCTGGATGGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGATCCAGCACCGGTCATACACCCAGAAAGTTGATGTTTATAGTTTTGGCATTGTTCTGTGGGAGCTCATAACTGGGTTGCTTCCTTTCCAGAACATGACTGCTGTGCAGGCTGCTTTTGCTGTTGTCAACAAAGGCGTCCGTCCAACAATCCCCATTGATTGTTTGCCTGTCTTATCTGATATCATGACCTGCTGCTGGGATTCTGACCCCAATAATAGGCCAACTTTCTCTCAGGTTGTCAAGATGCTTGAGGCAGCTGAGACAGAAATCATGACCAATATCAGAAAGGCACGTTTCAGGTGCTGCATTCATCCTACCGCTACAGGTTGATTCGGGAAAGAGGAAACTGGAGGC-AAAAAAATGTTGAATGGTAAAACTGATTTTGAGTCTGCCATGTGTATCTATTCGGCACAATTTCTTTTCAGATAGAAAAAGGGTTATAATTATGAGAAAAAACTAAACATTTCTCCTGTATTTTGTATCTTTTCCTTAAAACCGTGGATTTAAGACAGCGACTCGTTGTTAATACANGATATCTGATGTGCATCTATGCATGTCAGATTTTGGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247804" ref_strand="+" ref_description="SGN-E247804 [cLEF-42-N8]">
      <seq>tttttctccggagctccggtggtcggaaagttgatcggcgtcggagaacaagtagaattataaacttataatcacaatcgagggtctgtggaggtgtggtttgattctagaaatccccgtgcaaaagaaataagtcggattgaaacttttctgctgtagctgcctcatcagaaaaaatgatggaggctccaaaatctgttggacttacagacttgaatcaaaacctgtcgcagaacttttactataagcttggcgaggggtcaaacatgtctacggaaagttatgggatgagcaatgctggaggttctgttacaatgtcggttgataacagcagtgttggatcaaatgattctcacactcatattttaaaccaccagtacaaccacatccacaataactattctgttgctgctagcgtagtcagggggagagtttctagattgagcgatgatgccctcgctcaagccttggttgatcctcagttccccaccattgggcttgagatttatgatgagtggacaattgacttgaggaggcttaccattggacaagcttttgctcaaggatcttttgggaaactgtataagggaacttataatggtgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="78220" stop="75937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77920" g_stop="77839" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77838" i_stop="76764" i_length="1075">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76763" g_stop="76237" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="609" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E247804" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77920" e_stop="77839"/>
          <exon e_start="76763" e_stop="76237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAGGTAAATTTGCTTTTTGCTCCTTAATTTTGCCCGTTGATCATTCATTTTTTCTGAATTTTCCGTGATTTAATTAAAGTTTTTAGTTTTTTTTGTGTGTGATGTTGGAGTTAAAGTTTGAAGCTTTTTTTTTGCTTAAGGAAGTAGTTTGAGTTAGAGATGAAAATGGTGAACTTTTGTTTTACTAGGAATTGACCCCCCCCCCCCCCCAACCCTATAATTGGAAGAAAAATGTAGGTGGGAAAGTTGAATTTGGAGTTTTTTGTGATTTTGGAGTTGGTTTGATGTGTATATTTATGGGTTTTATGTTTTAGGTTTGGAGCTTTTTTGCTTAGGGAAGTAGTTTGAGCTGGAGATGAAAACATGTTTTGTTTAATTTGGAATTGAAACAGAAAAATTCGTCTTGGTTGTTTGATTTTTGGTAAAGTCTGAAACTAATAAAAAATGAAAGATATTATAATCAGTGGCGGAGCCAGGATTTTCAATAAGGGGTTCAAAATTGTAAAAATAGACACACGGAGTAGCCGAAGGGGGTTCGATACCAAGGTGGCTTCGCCCCTGATTAGAATGATGACCTTTTGTTCTATCATTATTGGAAGAAATATGTAGATGTAGGGGGTGAAAGTTCAATTTGGAGTTGTTTATCTCTTTCATTTTCTATGGTTTTGGGAAGTTTATCATATTGGTTTATGCTTATAGTTTGGATTCTTTTGGCTTATGGTGATGTTTTGTTTTTTTTGGAAATGAAAAACCCTATATTTGTTTACATGAAATTTACCCCCTGTAATTGGAAGAAAAATGTAGGGGTGACATCCATGAGGTCTCAGGTTGAATACCCCAAAGACAAAAAACATTAGGCGATTTCTTTCTATCTGTCCTAGCCTTGTTAGATAGAGTTGCTTGGTACTTGTTGCGAGTGGAAAGGTACATTATCTCGTGGAATTAGTCGAGGTGCATGCAAGCTGCGGACACCAAGTTGATATAAAAAAGAAGAGTTGAAAGTAGCTGACCCTGTCAGTCTATGTAGAAGAATTGATTTTTGATGTACCTAACCTTTTACATTTTTCATATTTTGCAGGGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACTGTATAAGGGAACTTATAATGGTGAAGATG</genome_strand>
        <mrna_strand>TTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAGAACAAGTAGAATTATAAACTTATAATCACAATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACTGTATAAGGGAACTTATAATGGTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723484" ref_strand="+" ref_description="SGN-E723484 [FC20CE12]">
      <seq>gatttttctccggagctccggtggtcggaaagttgatcggcgtcggaaaacaagtagaattataaacttataatcacaatcgagggtctgtggaggtgtggtttgattctagaaatccccgtgcaaaagaaataagtcggattgaaacttttctgctgtagctgcctcatcaaaaaaaatgatggaggctccaaaatctgttggacttacagacttgaatcaaaacctgtcgcagaacttttactataagcttggcgaggggtcaaacatgtctacggaaagttatgggatgagcaatgctggaggttctgttacaatgtcggttgataacagcagtgttggatcaaatgattctcacactcatattttaaaccaccagtacaaccacatccacaataactattctgttgctgctagcgtagtcagggggagagtttctagattgagcgatgatgccctcgctcaagccttggttgatcctcagttccccaccattgggcttgagatttatgatgagtggacaattgacttgaggaggcttaccattggacaagcttttgctcaaggatcttttgggaaactgtataagggaacttataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="78222" stop="75946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77922" g_stop="77839" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77838" i_stop="76764" i_length="1075">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76763" g_stop="76246" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="602" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E723484" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77922" e_stop="77839"/>
          <exon e_start="76763" e_stop="76246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAGGTAAATTTGCTTTTTGCTCCTTAATTTTGCCCGTTGATCATTCATTTTTTCTGAATTTTCCGTGATTTAATTAAAGTTTTTAGTTTTTTTTGTGTGTGATGTTGGAGTTAAAGTTTGAAGCTTTTTTTTTGCTTAAGGAAGTAGTTTGAGTTAGAGATGAAAATGGTGAACTTTTGTTTTACTAGGAATTGACCCCCCCCCCCCCCCAACCCTATAATTGGAAGAAAAATGTAGGTGGGAAAGTTGAATTTGGAGTTTTTTGTGATTTTGGAGTTGGTTTGATGTGTATATTTATGGGTTTTATGTTTTAGGTTTGGAGCTTTTTTGCTTAGGGAAGTAGTTTGAGCTGGAGATGAAAACATGTTTTGTTTAATTTGGAATTGAAACAGAAAAATTCGTCTTGGTTGTTTGATTTTTGGTAAAGTCTGAAACTAATAAAAAATGAAAGATATTATAATCAGTGGCGGAGCCAGGATTTTCAATAAGGGGTTCAAAATTGTAAAAATAGACACACGGAGTAGCCGAAGGGGGTTCGATACCAAGGTGGCTTCGCCCCTGATTAGAATGATGACCTTTTGTTCTATCATTATTGGAAGAAATATGTAGATGTAGGGGGTGAAAGTTCAATTTGGAGTTGTTTATCTCTTTCATTTTCTATGGTTTTGGGAAGTTTATCATATTGGTTTATGCTTATAGTTTGGATTCTTTTGGCTTATGGTGATGTTTTGTTTTTTTTGGAAATGAAAAACCCTATATTTGTTTACATGAAATTTACCCCCTGTAATTGGAAGAAAAATGTAGGGGTGACATCCATGAGGTCTCAGGTTGAATACCCCAAAGACAAAAAACATTAGGCGATTTCTTTCTATCTGTCCTAGCCTTGTTAGATAGAGTTGCTTGGTACTTGTTGCGAGTGGAAAGGTACATTATCTCGTGGAATTAGTCGAGGTGCATGCAAGCTGCGGACACCAAGTTGATATAAAAAAGAAGAGTTGAAAGTAGCTGACCCTGTCAGTCTATGTAGAAGAATTGATTTTTGATGTACCTAACCTTTTACATTTTTCATATTTTGCAGGGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACTGTATAAGGGAACTTATAATG</genome_strand>
        <mrna_strand>GATTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAAAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACTGTATAAGGGAACTTATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246144" ref_strand="+" ref_description="SGN-E246144 [cLEF-40-O20]">
      <seq>acaagtagaattataaacttataatcacaatcgagggtctgtggaggtgtggtttgattctagaaatccccgtgcaaaagaaataagtcggattgaaacttttctgctgtagctgcctcatcagaaaaaatgatggaggctccaaaatctgttggacttacagacttgaatcaaaacctgtcgcagaacttttactataagcttggcgaggggtcaaacatgtctacggaaagttatgggatgagcaatgctggaggttctgttacaatgtcggttgataacagcagtgttggatcaaatgattctcacactcatattttaaaccaccagtacaaccacatccacaataactattctgttgctgctagcgtagtcagggggagagtttctagattgagcgatgatgccctcgctcaagccttggttgatcctcagttccccaccattgggcttgagatttatgatgagtggacaattgacttgaggaggcttaccattggacaagcttttgctcaaggatcttttgggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="78173" stop="75966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77873" g_stop="77839" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77838" i_stop="76764" i_length="1075">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76763" g_stop="76266" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="533" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E246144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77873" e_stop="77839"/>
          <exon e_start="76763" e_stop="76266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAGAATTATAAACTTATAATCACAATCGAGGTAAATTTGCTTTTTGCTCCTTAATTTTGCCCGTTGATCATTCATTTTTTCTGAATTTTCCGTGATTTAATTAAAGTTTTTAGTTTTTTTTGTGTGTGATGTTGGAGTTAAAGTTTGAAGCTTTTTTTTTGCTTAAGGAAGTAGTTTGAGTTAGAGATGAAAATGGTGAACTTTTGTTTTACTAGGAATTGACCCCCCCCCCCCCCCAACCCTATAATTGGAAGAAAAATGTAGGTGGGAAAGTTGAATTTGGAGTTTTTTGTGATTTTGGAGTTGGTTTGATGTGTATATTTATGGGTTTTATGTTTTAGGTTTGGAGCTTTTTTGCTTAGGGAAGTAGTTTGAGCTGGAGATGAAAACATGTTTTGTTTAATTTGGAATTGAAACAGAAAAATTCGTCTTGGTTGTTTGATTTTTGGTAAAGTCTGAAACTAATAAAAAATGAAAGATATTATAATCAGTGGCGGAGCCAGGATTTTCAATAAGGGGTTCAAAATTGTAAAAATAGACACACGGAGTAGCCGAAGGGGGTTCGATACCAAGGTGGCTTCGCCCCTGATTAGAATGATGACCTTTTGTTCTATCATTATTGGAAGAAATATGTAGATGTAGGGGGTGAAAGTTCAATTTGGAGTTGTTTATCTCTTTCATTTTCTATGGTTTTGGGAAGTTTATCATATTGGTTTATGCTTATAGTTTGGATTCTTTTGGCTTATGGTGATGTTTTGTTTTTTTTGGAAATGAAAAACCCTATATTTGTTTACATGAAATTTACCCCCTGTAATTGGAAGAAAAATGTAGGGGTGACATCCATGAGGTCTCAGGTTGAATACCCCAAAGACAAAAAACATTAGGCGATTTCTTTCTATCTGTCCTAGCCTTGTTAGATAGAGTTGCTTGGTACTTGTTGCGAGTGGAAAGGTACATTATCTCGTGGAATTAGTCGAGGTGCATGCAAGCTGCGGACACCAAGTTGATATAAAAAAGAAGAGTTGAAAGTAGCTGACCCTGTCAGTCTATGTAGAAGAATTGATTTTTGATGTACCTAACCTTTTACATTTTTCATATTTTGCAGGGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACT</genome_strand>
        <mrna_strand>ACAAGTAGAATTATAAACTTATAATCACAATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391761" ref_strand="+" ref_description="SGN-E391761 [TUS-24-I16]">
      <seq>atttttctccggagctccggtggtcggaaagttgatcggcgtcggaaaacaagtagaattataaacttataatcacaatcgagggtctgtggaggtgtggtttgattctagaaatccccgtgcaaaagaaataagtcggattgaaacttttctgctgtagctgcctcatcagaaaaaatgatggaggctccaaaatctgttggacttacagacttgaatcaaaacctgtcgcagaacttttactataagcttggcgaggggtcaaacatgtctacggaaagttatgggatgagcaatgctggaggttctgttacaatgtcggttgataacagcagtgttggatcagatgattctcacactcatattttaaaccaccagtacaaccacatccacaataactattctgttgctgctagcgtagtcggggggagagtttctagattgagcgatgatgccctcgctcaagccttggttgatccctcagttccccaccattgggcttgatatttatgatgattggacaaatgacttgaggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="78221" stop="76009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77921" g_stop="77839" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77838" i_stop="76764" i_length="1075">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76763" g_stop="76309" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="539" r_length="456" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E391761" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77921" e_stop="77839"/>
          <exon e_start="76763" e_stop="76309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAGGTAAATTTGCTTTTTGCTCCTTAATTTTGCCCGTTGATCATTCATTTTTTCTGAATTTTCCGTGATTTAATTAAAGTTTTTAGTTTTTTTTGTGTGTGATGTTGGAGTTAAAGTTTGAAGCTTTTTTTTTGCTTAAGGAAGTAGTTTGAGTTAGAGATGAAAATGGTGAACTTTTGTTTTACTAGGAATTGACCCCCCCCCCCCCCCAACCCTATAATTGGAAGAAAAATGTAGGTGGGAAAGTTGAATTTGGAGTTTTTTGTGATTTTGGAGTTGGTTTGATGTGTATATTTATGGGTTTTATGTTTTAGGTTTGGAGCTTTTTTGCTTAGGGAAGTAGTTTGAGCTGGAGATGAAAACATGTTTTGTTTAATTTGGAATTGAAACAGAAAAATTCGTCTTGGTTGTTTGATTTTTGGTAAAGTCTGAAACTAATAAAAAATGAAAGATATTATAATCAGTGGCGGAGCCAGGATTTTCAATAAGGGGTTCAAAATTGTAAAAATAGACACACGGAGTAGCCGAAGGGGGTTCGATACCAAGGTGGCTTCGCCCCTGATTAGAATGATGACCTTTTGTTCTATCATTATTGGAAGAAATATGTAGATGTAGGGGGTGAAAGTTCAATTTGGAGTTGTTTATCTCTTTCATTTTCTATGGTTTTGGGAAGTTTATCATATTGGTTTATGCTTATAGTTTGGATTCTTTTGGCTTATGGTGATGTTTTGTTTTTTTTGGAAATGAAAAACCCTATATTTGTTTACATGAAATTTACCCCCTGTAATTGGAAGAAAAATGTAGGGGTGACATCCATGAGGTCTCAGGTTGAATACCCCAAAGACAAAAAACATTAGGCGATTTCTTTCTATCTGTCCTAGCCTTGTTAGATAGAGTTGCTTGGTACTTGTTGCGAGTGGAAAGGTACATTATCTCGTGGAATTAGTCGAGGTGCATGCAAGCTGCGGACACCAAGTTGATATAAAAAAGAAGAGTTGAAAGTAGCTGACCCTGTCAGTCTATGTAGAAGAATTGATTTTTGATGTACCTAACCTTTTACATTTTTCATATTTTGCAGGGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGAT-CCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGC</genome_strand>
        <mrna_strand>ATTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAGATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCGGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCCTCAGTTCCCCACCATTGGGCTTGATATTTATGATGATTGGACAAATGACTTGAGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547025" ref_strand="+" ref_description="SGN-E547025 [TUS-70-L3](-)">
      <seq>caaagtgaatcaaattttcgtcctaaattttagttgttttcctttttttttcctatttcaacaattgtatatgtattgtgtttcttatgttttttcatatttttttgatgaaataatcgattgtttgttcttattagatctcaaattagtcacagaatgaatgaatcatcttcatctatgaggattatcacagggtctatggtaaaatcaaaacaagttcaacatgaacaaacaatggaagaattgagatcaaagaaaaaaatatgaccctacggcagttcaagaagttattaacaatgctaaatctagaggcattaaaattgtacaaggaggaagaaagaggaaagcaacattgattcagaggaaaatgcatgtgaagttgacggatctgaagaacatcataattatgaggtagtggcttaaaacacaaatttagatacaatttttttgttacttagatgtcaatatacaaaaaattattgtttaagtaaattttgtattcacgtaattgtatatagtatattgcatgtttagtacacacaagttttagttatatatttgtatatgtgtctgaggatttgattactttatacatactttaagttatgtataatgaataatatactaagtcttaatagtggtagtagcagcattgtatattaaaggctcattattatttttgtttttgtatatatatacaaaaagtaattggacttagttatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="-" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="81150" stop="79774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80868" g_stop="80692" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="193" r_length="173" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80691" i_stop="80611" i_length="81">
            <donor d_prob="0.553" d_score="0.96"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80610" g_stop="80065" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="736" r_length="543" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="-" ref_id="SGN-E547025" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80868" e_stop="80692"/>
          <exon e_start="80610" e_stop="80065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAATTTTAGTCGTTTTCCTTTCTTTTTTTTTCTTATTCAACAATTCTATATGTATTGTGTTTCTTACGTTTTTTTTATATTTATTTGATGAAATAATCGATTGTTTGTTCTTATTAGATCTCAAATTAGTCACATAATGAATGAATCATCTTCATCTATGAGGATTATCAGAGGTATTCCATTGCATGTCAATTTTGTTGACAATTTACCATCGTTTTCAATGGGTTTAACTCAAGATTTTGGGGTTGATGTAGGGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAG-AAAAAATATGACCCTAGGGCAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGCAGTAAACATTGATTCAGATGAAAATGCATGTGAAGTTGACGGATCTGAAAAACATCATAATTATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATATACAAAAAATTATTGCTTAAGTAAATTTTGTAATCACGTAATTGTATATAGTATATTGCATGTTTAGTACAGACATGTTTTAGTTATATATTTGTATATGTGTCTGTGGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAG-ATTGTATATTAAAGGCTTATTATTATTTTTATTTTTTGTATATATATACAAAAAGTAATTGAACTTAGTTATACATATGGAAAAAT</genome_strand>
        <mrna_strand>TCCTAAATTTTAGTTGTTTTCC-T--TTTTTTTTCCTATTTCAACAATTGTATATGTATTGTGTTTCTTATG-TTTTTTCATATTTTTTTGATGAAATAATCGATTGTTTGTTCTTATTAGATCTCAAATTAGTCACAGAATGAATGAATCATCTTCATCTATGAGGATTATCACAG.................................................................................GGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAAATATGACCCTACGGCAGTTCAAGAAGTTATTAACAATGCTAAATCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGC----AACATTGATTCAGAGGAAAATGCATGTGAAGTTGACGGATCTGAAGAACATCATAATTATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATATACAAAAAATTATTGTTTAAGTAAATTTTGTATTCACGTAATTGTATATAGTATATTGCATGTTTAGTACACACAAGTTTTAGTTATATATTTGTATATGTGTCTGAGGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAGCATTGTATATTAAAGGCTCATTATTATTTTT-GTTTTTGTATATATATACAAAAAGTAATTGGACTTAGTTATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="81593" stop="82637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81893" g_stop="82335" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82336" i_stop="82578" i_length="243">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.087" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82579" g_stop="82598" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="460" r_length="19" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81893" e_stop="82335"/>
          <exon e_start="82579" e_stop="82598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTCTCTCTTTAAACTAAGGAATGTAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTAAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACTCCTAAATATTTTTTTT-TAAAAAAA-TAGAACTAATAAATATAAATTTAAAATTAATTTTTTAACTTCCCTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGTCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGTCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCTTATAAAGAGAGATAATTTATTGTAAGAAAAATGACACTAAAAATGTGACATTTAAAATGTGAATGTTTATTTGTAGTTAAGCTGAATTGAATATAATTTTTTCCACTTTGAATTTTTAAAAAGTATTTCTAAACCTAGAAAAAGGGTCAAGACAATGTTGGTGATAAGACAAATTAAACATGTTTAATTCATGAGTAAACACATTTTACTTGTTTTTTTAATTTTGTTATTTGTAATCAAATAGGTTTTTTCAATATTTCTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTT-T-TATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT...................................................................................................................................................................................................................................................ATTTTTT-AAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="91494" stop="92317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91780" g_stop="92017" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91780" e_stop="92017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAGGATTAATGAATATGAGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTATCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATAATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="91494" stop="92558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91781" g_stop="92258" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91781" e_stop="92258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGAGGATTAATGAATATGAGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTATCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATAATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGACTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>61</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15054" PGL_stop="13583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15054" e_stop="14960"/>
            <exon e_start="14223" e_stop="13583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15054" e_stop="14960" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14959" i_stop="14224" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14223" e_stop="13583" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15054" stop="14960"/>
              <exon start="14223" stop="13728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15049" stop="14960"/>
              <exon start="14223" stop="13583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15049" stop="14960"/>
              <exon start="14223" stop="13583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15018" stop="14960"/>
              <exon start="14223" stop="13707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14223" stop="13701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14223" stop="13707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14223" stop="13707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14096" stop="13710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14095" stop="13710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCAGATGAGCTTCGTGACCCTG : CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTACATGTTTGAGAACAACCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTTGAGTTTGCCGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGATGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATGATATCAGGTTTTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTTCGTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGGTCAGAATTTTGTCGTCTTTTTTAGTTTCATATTGTTTTCAAGTTGTACTATATCATGAACAACTAAATCTAAAAGACCTTGCTTTCCTTTTTCTTGCACTTGTATTGCTTCTGAAGATCTAGTTAGTTTCCTGGCATTCTATCTGGACCATTTGTTTAGTTTCTTTCAGCTTCTTTGCTGGTCCGAAACTTTGTTCGAAATGAAGTTCATCCATTTTTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R  S  R  *  A  S  *  P  C :   *  K  E  P  L  C  C  T  R  S  Y  Q  C  L  E  E  V  H  V  *  E  Q  P  G  K  *  S  R  V  E  G  H  *  *  E  D  *  *  T  G  *  R  S  C  *  V  C  R  *  K  P  S  S  C  S  *  P  A  A  R  E  R  V  C  *  S  K  G  L  W  H  W  A  *  W  K  V  Q  M  *  R  S  Q  V  H  R  R  H  C  S  C  L  G  L  K  A  H  S  V  I  N  D  I  R  F  *  V  T  E  L  V  I  A  N  Y  T  S  I  *  R  S  G  S  P  S  Y  *  E  V  W  Y  K  G  T  L  L  F  Q  F  *  V  R  I  L  S  S  F  L  V  S  Y  C  F  Q  V  V  L  Y  H  E  Q  L  N  L  K  D  L  A  F  L  F  L  A  L  V  L  L  L  K  I  *  L  V  S  W  H  S  I  W  T  I  C  L  V  S  F  S  F  F  A  G  P  K  L  C  S  K  *  S  S  S  I  F  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  D  P  D  E  L  R  D  P   : A  E  K  N  H  Y  A  A  R  D  P  I  S  A  L  K  K  Y  M  F  E  N  N  L  A  S  E  A  E  L  K  A  I  D  K  K  I  D  E  L  V  E  E  A  V  E  F  A  D  E  S  P  H  P  V  R  S  Q  L  L  E  N  V  F  A  D  P  K  G  F  G  I  G  P  D  G  R  Y  R  C  E  D  P  K  F  T  E  G  T  A  H  V  *  V  S  R  H  I  Q  *  S  M  I  S  G  F  K  L  L  N  *  *  L  P  I  I  L  L  Y  K  G  L  E  V  L  R  I  R  K  F  G  T  K  V  L  Y  Y  F  N  F  R  S  E  F  C  R  L  F  *  F  H  I  V  F  K  L  Y  Y  I  M  N  N  *  I  *  K  T  L  L  S  F  F  L  H  L  Y  C  F  *  R  S  S  *  F  P  G  I  L  S  G  P  F  V  *  F  L  S  A  S  L  L  V  R  N  F  V  R  N  E  V  H  P  F  L </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  P  I  Q  M  S  F  V  T  L  :  L  K  R  T  I  M  L  H  E  I  L  S  V  P  *  R  S  T  C  L  R  T  T  W  Q  V  K  Q  S  *  R  P  L  I  R  R  L  M  N  W  L  K  K  L  L  S  L  P  M  K  A  L  I  L  F  V  A  S  C  S  R  T  C  L  L  I  Q  R  A  L  A  L  G  L  M  E  G  T  D  V  K  I  P  S  S  P  K  A  L  L  M  S  R  S  Q  G  T  F  S  N  Q  *  Y  Q  V  L  S  Y  *  I  S  D  C  Q  L  Y  F  Y  I  K  V  W  K  S  F  V  L  G  S  L  V  Q  R  Y  F  I  I  S  I  L  G  Q  N  F  V  V  F  F  S  F  I  L  F  S  S  C  T  I  S  *  T  T  K  S  K  R  P  C  F  P  F  S  C  T  C  I  A  S  E  D  L  V  S  F  L  A  F  Y  L  D  H  L  F  S  F  F  Q  L  L  C  W  S  E  T  L  F  E  M  K  F  I  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15053" stop="14960"/>
                    <exon start="14223" stop="13946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFSDPDELRDPAEKNHYAARDPISALKKYMFENNLASEAELKAIDKKIDELVEEAVEFADESPHPVRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13707" PGL_stop="14168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13707" e_stop="14168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="13707" e_stop="14168" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13707" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAAAGGAAAGCAAGGTCTTTTAGATTTAGTTGTTCATGATATAGTACAACTTGAAAACAATATGAAACTAAAAAAGACGACAAAATTCTGACCTAAAATTGAAATAATAAAGTACCTTTGTACCAAACTTCCTAATACGAAGGACTTCCAGACCTTTATATAGAAGTATAATTGGCAATCACTAATTCAGTAACTTAAAACCTGATATCATTGATTACTGAATGTGCCTTGAGACCTAGACATGAGCAGTGCCTTCGGTGAACTTGGGATCTTCACATCTGTACCTTCCATCAGGCCCAATGCCAAAGCCCTTTGGATCAGCAAACACGTTCTCGAGCAGCTGGCTACGAACAGGATGAGGGCTTTCATCGGCAAACTCAACAGCTTCTTCAACCAGTTCATCAATCTTCTTATCAATGGCCTTCAACTCTGCTTCACTTGCCAGGTTGTTCTCAAAC</gDNA_template>
            <first_frame> K  K  K  E  S  K  V  F  *  I  *  L  F  M  I  *  Y  N  L  K  T  I  *  N  *  K  R  R  Q  N  S  D  L  K  L  K  *  *  S  T  F  V  P  N  F  L  I  R  R  T  S  R  P  L  Y  R  S  I  I  G  N  H  *  F  S  N  L  K  P  D  I  I  D  Y  *  M  C  L  E  T  *  T  *  A  V  P  S  V  N  L  G  S  S  H  L  Y  L  P  S  G  P  M  P  K  P  F  G  S  A  N  T  F  S  S  S  W  L  R  T  G  *  G  L  S  S  A  N  S  T  A  S  S  T  S  S  S  I  F  L  S  M  A  F  N  S  A  S  L  A  R  L  F  S  N </first_frame>
            <second_frame>  R  K  R  K  A  R  S  F  R  F  S  C  S  *  Y  S  T  T  *  K  Q  Y  E  T  K  K  D  D  K  I  L  T  *  N  *  N  N  K  V  P  L  Y  Q  T  S  *  Y  E  G  L  P  D  L  Y  I  E  V  *  L  A  I  T  N  S  V  T  *  N  L  I  S  L  I  T  E  C  A  L  R  P  R  H  E  Q  C  L  R  *  T  W  D  L  H  I  C  T  F  H  Q  A  Q  C  Q  S  P  L  D  Q  Q  T  R  S  R  A  A  G  Y  E  Q  D  E  G  F  H  R  Q  T  Q  Q  L  L  Q  P  V  H  Q  S  S  Y  Q  W  P  S  T  L  L  H  L  P  G  C  S  Q   </second_frame>
            <third_frame>   E  K  G  K  Q  G  L  L  D  L  V  V  H  D  I  V  Q  L  E  N  N  M  K  L  K  K  T  T  K  F  *  P  K  I  E  I  I  K  Y  L  C  T  K  L  P  N  T  K  D  F  Q  T  F  I  *  K  Y  N  W  Q  S  L  I  Q  *  L  K  T  *  Y  H  *  L  L  N  V  P  *  D  L  D  M  S  S  A  F  G  E  L  G  I  F  T  S  V  P  S  I  R  P  N  A  K  A  L  W  I  S  K  H  V  L  E  Q  L  A  T  N  R  M  R  A  F  I  G  K  L  N  S  F  F  N  Q  F  I  N  L  L  I  N  G  L  Q  L  C  F  T  C  Q  V  V  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13943" stop="14167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLDMSSAFGELGIFTSVPSIRPNAKALWISKHVLEQLATNRMRAFIGKLNSFFNQFINLLINGLQLCFTCQVVLK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13972" stop="14166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWDLHICTFHQAQCQSPLDQQTRSRAAGYEQDEGFHRQTQQLLQPVHQSSYQWPSTLLHLPGCSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16617" PGL_stop="16090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16617" e_stop="16151"/>
            <exon e_start="16094" e_stop="16090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.528" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16617" e_stop="16151" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.528" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16150" i_stop="16095" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="16094" e_stop="16090" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16617" stop="16151"/>
              <exon start="16094" stop="16090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16532" stop="16157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16499" stop="16151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAATCGAGAGGGTGAGGCCTTAATAGTTCTATCAAATTATTAGTCCAACATCCCCATTTTGAGTTCTTTGACGTTAAATCCAACAATTTGCTTACATTTTCCCTTCTTGTTTTCTCCGCTCACTTCTTCCTTTATATATCACGCTTCATCTTCTGAACAATCCCATAAAATACATCAAGTTTTTCTCTGTAATCATGGCTGCATCAGCCTCTTCTTTTGCTGCTAACAATTTTTTGCAGCCTATCAACTCCACCAGATCCATTGACAACAACAACAAGAAGACCCTTTTGGGAAATCAGCTTAAAGACAGCTCCTTTTTTCTTGGATCAGCTAAGAAACTCTATATGAAGAAACCCTTTTCGTCTCAGAACTCGAAAAGCCGATCTAATGGTGTTTTCGCTGTTTCTGAGGTTGTTAAGAACAAGAAGCCCAATACAGACTCCTCACTCTCCAATCTGGTACTT : GCCAG</gDNA_template>
            <first_frame> T  K  S  R  G  *  G  L  N  S  S  I  K  L  L  V  Q  H  P  H  F  E  F  F  D  V  K  S  N  N  L  L  T  F  S  L  L  V  F  S  A  H  F  F  L  Y  I  S  R  F  I  F  *  T  I  P  *  N  T  S  S  F  S  L  *  S  W  L  H  Q  P  L  L  L  L  L  T  I  F  C  S  L  S  T  P  P  D  P  L  T  T  T  T  R  R  P  F  W  E  I  S  L  K  T  A  P  F  F  L  D  Q  L  R  N  S  I  *  R  N  P  F  R  L  R  T  R  K  A  D  L  M  V  F  S  L  F  L  R  L  L  R  T  R  S  P  I  Q  T  P  H  S  P  I  W  Y  L :   P  </first_frame>
            <second_frame>  R  N  R  E  G  E  A  L  I  V  L  S  N  Y  *  S  N  I  P  I  L  S  S  L  T  L  N  P  T  I  C  L  H  F  P  F  L  F  S  P  L  T  S  S  F  I  Y  H  A  S  S  S  E  Q  S  H  K  I  H  Q  V  F  L  C  N  H  G  C  I  S  L  F  F  C  C  *  Q  F  F  A  A  Y  Q  L  H  Q  I  H  *  Q  Q  Q  Q  E  D  P  F  G  K  S  A  *  R  Q  L  L  F  S  W  I  S  *  E  T  L  Y  E  E  T  L  F  V  S  E  L  E  K  P  I  *  W  C  F  R  C  F  *  G  C  *  E  Q  E  A  Q  Y  R  L  L  T  L  Q  S  G  T   : C  Q </second_frame>
            <third_frame>   E  I  E  R  V  R  P  *  *  F  Y  Q  I  I  S  P  T  S  P  F  *  V  L  *  R  *  I  Q  Q  F  A  Y  I  F  P  S  C  F  L  R  S  L  L  P  L  Y  I  T  L  H  L  L  N  N  P  I  K  Y  I  K  F  F  S  V  I  M  A  A  S  A  S  S  F  A  A  N  N  F  L  Q  P  I  N  S  T  R  S  I  D  N  N  N  K  K  T  L  L  G  N  Q  L  K  D  S  S  F  F  L  G  S  A  K  K  L  Y  M  K  K  P  F  S  S  Q  N  S  K  S  R  S  N  G  V  F  A  V  S  E  V  V  K  N  K  K  P  N  T  D  S  S  L  S  N  L  V  L  :  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16537" stop="16151"/>
                    <exon start="16094" stop="16092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQQFAYIFPSCFLRSLLPLYITLHLLNNPIKYIKFFSVIMAASASSFAANNFLQPINSTRSIDNNNKKTLLGNQLKDSSFFLGSAKKLYMKKPFSSQNSKSRSNGVFAVSEVVKNKKPNTDSSLSNLVLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19292" PGL_stop="17908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19292" e_stop="19197"/>
            <exon e_start="18446" e_stop="17908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19292" e_stop="19197" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="19196" i_stop="18447" i_length="750"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="18446" e_stop="17908" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19292" stop="19197"/>
              <exon start="18446" stop="17925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18446" stop="17944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18398" stop="17922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18387" stop="17945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18351" stop="17936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18344" stop="17908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249172" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18241" stop="17944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATCCAGATGAGCTTCGTGACCCTG : CTGAAAAGAACCATTATGCTGCACGAGATCCTATCAGTGCCTTGAAGAAGTATATGTTTGAGAACAATCTGGCAAGTGAAGCAGAGTTGAAGGCCATTGATAAGAAGATTGATGAACTGGTTGAAGAAGCTGTCGAATTTGCGGATGAAAGCCCTCATCCTGTTCGTAGCCAGCTGCTCGAGAACGTGTTTGCTGATCCAAAGGGCTTTGGCATTGGGCCTGACGGAAGGTACAGATGTGAAGATCCCAAGTTCACCGAAGGCACTGCTCATGTCTAGGTCTCAAGGCACATTCAGTAATCAATAATATCAGGTTCTAAGTTACTGAATTAGTGATTGCCAATTATACTTCTATATAAAGGTCTGGAAGTCCTCCTTATTAGGAAGTTTGGTACAAAGGTACTTTATTATTTCAATTTTAGTTCAAAATTTTGTTGTTATTAGTTTCACATTGTTTTCAAGTTGTACTATATTATGAACAACAAAATCTATTTCAAACACACAATCTCTTATTTGGAAAAACCAAGTTGTATGGTTATA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  Q  M  S  F  V  T  L  :  L  K  R  T  I  M  L  H  E  I  L  S  V  P  *  R  S  I  C  L  R  T  I  W  Q  V  K  Q  S  *  R  P  L  I  R  R  L  M  N  W  L  K  K  L  S  N  L  R  M  K  A  L  I  L  F  V  A  S  C  S  R  T  C  L  L  I  Q  R  A  L  A  L  G  L  T  E  G  T  D  V  K  I  P  S  S  P  K  A  L  L  M  S  R  S  Q  G  T  F  S  N  Q  *  Y  Q  V  L  S  Y  *  I  S  D  C  Q  L  Y  F  Y  I  K  V  W  K  S  S  L  L  G  S  L  V  Q  R  Y  F  I  I  S  I  L  V  Q  N  F  V  V  I  S  F  T  L  F  S  S  C  T  I  L  *  T  T  K  S  I  S  N  T  Q  S  L  I  W  K  N  Q  V  V  W  L   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  S  R  *  A  S  *  P  C :   *  K  E  P  L  C  C  T  R  S  Y  Q  C  L  E  E  V  Y  V  *  E  Q  S  G  K  *  S  R  V  E  G  H  *  *  E  D  *  *  T  G  *  R  S  C  R  I  C  G  *  K  P  S  S  C  S  *  P  A  A  R  E  R  V  C  *  S  K  G  L  W  H  W  A  *  R  K  V  Q  M  *  R  S  Q  V  H  R  R  H  C  S  C  L  G  L  K  A  H  S  V  I  N  N  I  R  F  *  V  T  E  L  V  I  A  N  Y  T  S  I  *  R  S  G  S  P  P  Y  *  E  V  W  Y  K  G  T  L  L  F  Q  F  *  F  K  I  L  L  L  L  V  S  H  C  F  Q  V  V  L  Y  Y  E  Q  Q  N  L  F  Q  T  H  N  L  L  F  G  K  T  K  L  Y  G  Y  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  D  P  D  E  L  R  D  P   : A  E  K  N  H  Y  A  A  R  D  P  I  S  A  L  K  K  Y  M  F  E  N  N  L  A  S  E  A  E  L  K  A  I  D  K  K  I  D  E  L  V  E  E  A  V  E  F  A  D  E  S  P  H  P  V  R  S  Q  L  L  E  N  V  F  A  D  P  K  G  F  G  I  G  P  D  G  R  Y  R  C  E  D  P  K  F  T  E  G  T  A  H  V  *  V  S  R  H  I  Q  *  S  I  I  S  G  S  K  L  L  N  *  *  L  P  I  I  L  L  Y  K  G  L  E  V  L  L  I  R  K  F  G  T  K  V  L  Y  Y  F  N  F  S  S  K  F  C  C  Y  *  F  H  I  V  F  K  L  Y  Y  I  M  N  N  K  I  Y  F  K  H  T  I  S  Y  L  E  K  P  S  C  M  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19290" stop="19197"/>
                    <exon start="18446" stop="18169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFSDPDELRDPAEKNHYAARDPISALKKYMFENNLASEAELKAIDKKIDELVEEAVEFADESPHPVRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22514" PGL_stop="28294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22514" e_stop="22577"/>
            <exon e_start="23824" e_stop="24028"/>
            <exon e_start="25629" e_stop="25717"/>
            <exon e_start="25807" e_stop="25902"/>
            <exon e_start="26909" e_stop="27002"/>
            <exon e_start="27317" e_stop="27645"/>
            <exon e_start="28093" e_stop="28294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.701" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.581" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="22514" e_stop="22577" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23824" e_stop="24028" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25629" e_stop="25717" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25807" e_stop="25902" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26909" e_stop="27002" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.701" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27317" e_stop="27645" e_length="329"/>
          </exon>
          <intron i_serial="6" don_prob="0.581" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="28093" e_stop="28294" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22514" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22517" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22518" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22518" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="26977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27645"/>
              <exon start="28093" stop="28294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27645"/>
              <exon start="28093" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27645"/>
              <exon start="28093" stop="28167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAG : CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAG : CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC : CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA : TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT : GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG : GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGGAATACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAGTTCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</gDNA_template>
            <first_frame> Q  K  K  D  L  T  L  C  L  Q  G  K  N  P  A  E  I  L  C  V  A   : A  V  N  M  V  N  V  V  N  F  F  M  L  P  N  N  N  R  S  Q  I  H  L  D  L  A  V  N  P  L  I  F  R  V  Q  I  C  S  R  Q  S  P  T  L  L  V  L  V  F  R  A  T  P  S  Q  E  V  L  V  I  W  G  S  N  R  I  N  T  S :   L  L  K  T  S  G  L  V  L  Q  L  P  T  V  L  H  R  G  K  P  T  I  S  L  *  H  L  I  T   : P  A  Q  M  L  S  H  A  D  A  R  L  W  K  I  L  I  M  R  S  H  C  G  C  L  P  A  M  V  I  V  K   : M  V  L  V  I  L  L  V  M  L  A  M  K  S  C  E  Q  *  H  T  M  M  R  N  V  D  R  A  *  C  L  L :   L  R  E  R  G  A  R  L  I  L  K  *  L  N  S  K  I  Y  C  K  I  L  M  H  L  H  Q  L  L  L  L  M  L  K  V  L  F  L  V  P  H  Q  V  P  H  *  V  L  K  V  L  F  L  V  P  L  Q  V  P  Q  V  L  F  L  A  P  H  Q  M  P  H  *  V  L  K  V  L  F  L  V  L  H  Q  M  H  C  Q  V  L  K  A  V  F  L  L  Q  P  Q  V  L  V  S  W  E  P  Y  *  I  Q   : G  H  Q  L  H  Q  L  V  H  L  G  N  P  V  S  L  G  T  L  L  R  H  Q  I  H  L  G  *  M  L  F  H  L  G  I  H  Q  H  Q  V  I  *  Q  G  F  R  V  L  S  V  L  E  Y  A  F  L  F  S  S  L  T  L  L  A  G  S  F   </first_frame>
            <second_frame>  K  K  R  T  *  R  Y  A  S  K  E  R  T  L  Q  K  F  Y  A  W  Q  :  L  S  I  W  *  T  L  *  I  S  S  C  C  P  T  T  T  E  A  K  S  I  W  I  W  Q  S  I  H  *  F  S  E  Y  K  Y  A  A  D  K  V  Q  P  F  W  F  W  C  S  E  Q  L  P  A  K  R  F  *  *  F  G  A  Q  T  E  S  I  Q   : A  F  *  K  Q  V  D  S  F  C  N  Y  Q  Q  F  F  I  A  A  N  R  Q  S  A  C  S  T  *  S  H  :  L  H  R  C  *  V  M  Q  T  P  D  C  G  R  F  *  *  *  E  A  I  V  A  A  Y  L  L  W  S  S  *  K  :  W  S  L  *  Y  Y  W  *  C  *  L  *  R  A  A  S  S  S  I  R  *  C  E  T  W  T  E  L  D  V  Y   : C  *  E  R  E  E  P  G  *  F  *  S  S  *  I  R  K  S  I  A  K  S  L  C  I  F  I  N  F  C  S  *  C  S  K  S  F  S  W  C  H  T  K  C  L  I  E  C  S  K  S  F  S  W  C  H  S  K  C  L  K  S  F  S  W  R  R  T  K  C  L  I  E  C  S  K  S  F  S  W  C  C  T  K  C  I  V  K  C  S  K  Q  F  S  S  F  S  L  K  F  *  S  V  G  N  H  T  E  Y  R  :  D  I  N  S  T  N  *  Y  I  W  A  T  Q  S  P  W  E  L  F  *  D  I  K  F  I  W  G  E  C  F  F  I  W  E  Y  I  N  I  R  *  F  D  R  V  F  E  Y  Y  Q  F  L  S  M  R  F  Y  L  V  A  *  L  C  L  Q  V  P  L  </second_frame>
            <third_frame>   K  K  G  L  N  A  M  P  P  R  K  E  P  C  R  N  F  M  R  G  S :   C  Q  Y  G  E  R  C  K  F  L  H  A  A  Q  Q  Q  P  K  P  N  P  F  G  F  G  S  Q  S  T  N  F  Q  S  T  N  M  Q  Q  T  K  S  N  P  F  G  F  G  V  Q  S  N  S  Q  P  R  G  S  S  D  L  G  L  K  Q  N  Q  Y  K  :  P  F  E  N  K  W  T  R  S  A  T  T  N  S  S  S  S  R  Q  T  D  N  Q  P  V  A  P  N  H  T :   C  T  D  A  E  S  C  R  R  Q  I  V  E  D  F  N  N  E  K  P  L  W  L  L  T  C  Y  G  H  R  K  N :   G  P  C  D  I  T  G  D  V  S  Y  E  E  L  R  A  V  A  Y  D  D  A  K  R  G  Q  S  L  M  S  I  :  V  E  R  E  R  S  Q  V  N  S  K  V  A  E  F  E  N  L  L  Q  N  P  Y  A  S  S  S  T  S  A  L  N  A  Q  S  P  F  P  G  A  T  P  S  A  S  L  S  A  Q  S  P  F  P  G  A  T  P  S  A  S  S  P  F  P  G  A  A  P  N  A  S  L  S  A  Q  S  P  F  P  G  A  A  P  N  A  L  S  S  A  Q  S  S  F  P  P  S  A  S  S  F  S  Q  L  G  T  I  L  N  T  G :   T  S  T  P  P  T  S  T  F  G  Q  P  S  L  P  G  N  S  F  K  T  S  N  S  S  G  V  N  A  F  S  F  G  N  T  S  T  S  G  N  L  T  G  F  S  S  I  I  S  S  *  V  C  V  F  I  *  *  L  D  F  A  C  R  F  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22516" stop="22577"/>
                    <exon start="23824" stop="24028"/>
                    <exon start="25629" stop="25717"/>
                    <exon start="25807" stop="25902"/>
                    <exon start="26909" stop="27002"/>
                    <exon start="27317" stop="27645"/>
                    <exon start="28093" stop="28246"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKGLNAMPPRKEPCRNFMRGSCQYGERCKFLHAAQQQPKPNPFGFGSQSTNFQSTNMQQTKSNPFGFGVQSNSQPRGSSDLGLKQNQYKPFENKWTRSATTNSSSSRQTDNQPVAPNHTCTDAESCRRQIVEDFNNEKPLWLLTCYGHRKNGPCDITGDVSYEELRAVAYDDAKRGQSLMSIVERERSQVNSKVAEFENLLQNPYASSSTSALNAQSPFPGATPSASLSAQSPFPGATPSASSPFPGAAPNASLSAQSPFPGAAPNALSSAQSSFPPSASSFSQLGTILNTGTSTPPTSTFGQPSLPGNSFKTSNSSGVNAFSFGNTSTSGNLTGFSSIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31632" PGL_stop="29470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31632" e_stop="31410"/>
            <exon e_start="29831" e_stop="29470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.262" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31632" e_stop="31410" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.262">
            <gDNA_intron_boundary i_start="31409" i_stop="29832" i_length="1578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29831" e_stop="29470" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31632" stop="31410"/>
              <exon start="29831" stop="29487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31621" stop="31410"/>
              <exon start="29831" stop="29470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31621" stop="31410"/>
              <exon start="29831" stop="29485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31621" stop="31410"/>
              <exon start="29831" stop="29485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31611" stop="31410"/>
              <exon start="29831" stop="29568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31563" stop="31410"/>
              <exon start="29831" stop="29598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31488" stop="31410"/>
              <exon start="29831" stop="29598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31481" stop="31410"/>
              <exon start="29831" stop="29487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31481" stop="31410"/>
              <exon start="29831" stop="29487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31469" stop="31410"/>
              <exon start="29831" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31457" stop="31410"/>
              <exon start="29831" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31452" stop="31410"/>
              <exon start="29831" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31452" stop="31410"/>
              <exon start="29831" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29772" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29697" stop="29492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTTCAAATTCAGTACTGCGATTCCTAGGGTTTAGGCCGGAGAGGACGACGGAAGAAGATGAAGCCGGTAGTAGGAACAGTAGTGTCTAACAAGATGCAGAAATCAGTAGTGGTGGCAGTGGATAGACTCTTCCACAACAAGGTTTACAATCGATATGTCAAACGGACCTCCAAATTCATGGCTCATGATGACAAAGACGAATGCAACATCGGTGACCGC : GTTAAGTTGGATCATTCAAGACCACTGAGCAAGCGCAAGCACTGGGTTGTAGCTGAAATTTTGAAAAGAGCAAGAATTTATGTGCCTCCGCCACGAGTTACCACTGAGAGGGTCAACAAGACTCAAGTGTCTGCCCCCTAATGCTAGTTAGAGCTGAAAGAGAATTACTATCTCAATCTTTGTCTTGTGTATCCAGAACAAATTGCCTATTAACTGTTAACTTTTTTGAAACAAGTACTGCTCACTGCTCAGAAACGTAGAGTTTCTACTCAACCTCCTCGATCAGTGCAATTAGATTACCATTTTATTCCTGCACTCAATAAAAAAAATTTATCCTTTAGTTAAATATCAGTTATTCCTGG</gDNA_template>
            <first_frame> G  S  S  N  S  V  L  R  F  L  G  F  R  P  E  R  T  T  E  E  D  E  A  G  S  R  N  S  S  V  *  Q  D  A  E  I  S  S  G  G  S  G  *  T  L  P  Q  Q  G  L  Q  S  I  C  Q  T  D  L  Q  I  H  G  S  *  *  Q  R  R  M  Q  H  R  *  P   : R  *  V  G  S  F  K  T  T  E  Q  A  Q  A  L  G  C  S  *  N  F  E  K  S  K  N  L  C  A  S  A  T  S  Y  H  *  E  G  Q  Q  D  S  S  V  C  P  L  M  L  V  R  A  E  R  E  L  L  S  Q  S  L  S  C  V  S  R  T  N  C  L  L  T  V  N  F  F  E  T  S  T  A  H  C  S  E  T  *  S  F  Y  S  T  S  S  I  S  A  I  R  L  P  F  Y  S  C  T  Q  *  K  K  F  I  L  *  L  N  I  S  Y  S  W </first_frame>
            <second_frame>  E  V  Q  I  Q  Y  C  D  S  *  G  L  G  R  R  G  R  R  K  K  M  K  P  V  V  G  T  V  V  S  N  K  M  Q  K  S  V  V  V  A  V  D  R  L  F  H  N  K  V  Y  N  R  Y  V  K  R  T  S  K  F  M  A  H  D  D  K  D  E  C  N  I  G  D  R  :  V  K  L  D  H  S  R  P  L  S  K  R  K  H  W  V  V  A  E  I  L  K  R  A  R  I  Y  V  P  P  P  R  V  T  T  E  R  V  N  K  T  Q  V  S  A  P  *  C  *  L  E  L  K  E  N  Y  Y  L  N  L  C  L  V  Y  P  E  Q  I  A  Y  *  L  L  T  F  L  K  Q  V  L  L  T  A  Q  K  R  R  V  S  T  Q  P  P  R  S  V  Q  L  D  Y  H  F  I  P  A  L  N  K  K  N  L  S  F  S  *  I  S  V  I  P   </second_frame>
            <third_frame>   K  F  K  F  S  T  A  I  P  R  V  *  A  G  E  D  D  G  R  R  *  S  R  *  *  E  Q  *  C  L  T  R  C  R  N  Q  *  W  W  Q  W  I  D  S  S  T  T  R  F  T  I  D  M  S  N  G  P  P  N  S  W  L  M  M  T  K  T  N  A  T  S  V  T  A :   L  S  W  I  I  Q  D  H  *  A  S  A  S  T  G  L  *  L  K  F  *  K  E  Q  E  F  M  C  L  R  H  E  L  P  L  R  G  S  T  R  L  K  C  L  P  P  N  A  S  *  S  *  K  R  I  T  I  S  I  F  V  L  C  I  Q  N  K  L  P  I  N  C  *  L  F  *  N  K  Y  C  S  L  L  R  N  V  E  F  L  L  N  L  L  D  Q  C  N  *  I  T  I  L  F  L  H  S  I  K  K  I  Y  P  L  V  K  Y  Q  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31601" stop="31410"/>
                    <exon start="29831" stop="29691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGRRGRRKKMKPVVGTVVSNKMQKSVVVAVDRLFHNKVYNRYVKRTSKFMAHDDKDECNIGDRVKLDHSRPLSKRKHWVVAEILKRARIYVPPPRVTTERVNKTQVSAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37663" PGL_stop="38499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37663" e_stop="38499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="37663" e_stop="38499" e_length="837"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37663" stop="38267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37664" stop="38458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37666" stop="38499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGAGAGAGTTTTTGGTATCCGAGGCTTCGAGGGTTGAGAGAAGAAGACGTACAATGGTCGATAGATAGTTTGGTGGTAACTAAGAATATGGTGGTTCGAGCTGAAAAGGTCACTTATTTGGTATTTGCTGGGTTAAGAGGAACTAGGCCATACGCCCCCGGTCGAGTGCTGAGGCAACTAGGAGGGAAGCAAGAGTTGCCCCAGATTGCTGATATGAGGAAATTCGTAACTGACCACGAGAATAGGCGAGTGGCATTTTCCGAAGACATGCGTAGGATGTGGAGATCTCGAAGAGTGTTGGGTGAGCCTGTACCAGATAGGTTTCGTCCAGAATGCTCGAGCGAGTACAAAGAATGGTTGAAAAAGAGTCTCGCTGGAACAATTGAGCCTGGTCCAAACGTTCCTCACATTATTGCCGATGTTGGAGCCAAACATCAAGTCCGACTTCACCGCCTTCAAGAGAAGTTTGATAAGAGTGAATTAGAGCATCAACGTCGTCATTCCGAAGATGCCAAAGTCATAGCTCGATTGAAACAAGAACTGCGAAGGGCCAGACAATGCATGACAGAGTTAGATGATAGCATGGAGCGACAGATTCATTCGATAGAGGGGTTCAGTCATCAAGAAGGAGCTCGATTGGCAAGAGATCATCTCTGGGCGAATAGATATGCCATGTGGGAAGAGGTCAACATCGCCAAGAGGACCAGACTTGGCGAAGGATCAGAGGAGGCATGATTTTTACCATCCCCTGCGTGGGACAGTTTTATTTGTACTTTGTTTTGTAATTTATTTTTCAGGACTATTTTCTATTTTATGTTTATCAGACATTTTGGA</gDNA_template>
            <first_frame> G  G  E  S  F  W  Y  P  R  L  R  G  L  R  E  E  D  V  Q  W  S  I  D  S  L  V  V  T  K  N  M  V  V  R  A  E  K  V  T  Y  L  V  F  A  G  L  R  G  T  R  P  Y  A  P  G  R  V  L  R  Q  L  G  G  K  Q  E  L  P  Q  I  A  D  M  R  K  F  V  T  D  H  E  N  R  R  V  A  F  S  E  D  M  R  R  M  W  R  S  R  R  V  L  G  E  P  V  P  D  R  F  R  P  E  C  S  S  E  Y  K  E  W  L  K  K  S  L  A  G  T  I  E  P  G  P  N  V  P  H  I  I  A  D  V  G  A  K  H  Q  V  R  L  H  R  L  Q  E  K  F  D  K  S  E  L  E  H  Q  R  R  H  S  E  D  A  K  V  I  A  R  L  K  Q  E  L  R  R  A  R  Q  C  M  T  E  L  D  D  S  M  E  R  Q  I  H  S  I  E  G  F  S  H  Q  E  G  A  R  L  A  R  D  H  L  W  A  N  R  Y  A  M  W  E  E  V  N  I  A  K  R  T  R  L  G  E  G  S  E  E  A  *  F  L  P  S  P  A  W  D  S  F  I  C  T  L  F  C  N  L  F  F  R  T  I  F  Y  F  M  F  I  R  H  F  G </first_frame>
            <second_frame>  E  E  R  V  F  G  I  R  G  F  E  G  *  E  K  K  T  Y  N  G  R  *  I  V  W  W  *  L  R  I  W  W  F  E  L  K  R  S  L  I  W  Y  L  L  G  *  E  E  L  G  H  T  P  P  V  E  C  *  G  N  *  E  G  S  K  S  C  P  R  L  L  I  *  G  N  S  *  L  T  T  R  I  G  E  W  H  F  P  K  T  C  V  G  C  G  D  L  E  E  C  W  V  S  L  Y  Q  I  G  F  V  Q  N  A  R  A  S  T  K  N  G  *  K  R  V  S  L  E  Q  L  S  L  V  Q  T  F  L  T  L  L  P  M  L  E  P  N  I  K  S  D  F  T  A  F  K  R  S  L  I  R  V  N  *  S  I  N  V  V  I  P  K  M  P  K  S  *  L  D  *  N  K  N  C  E  G  P  D  N  A  *  Q  S  *  M  I  A  W  S  D  R  F  I  R  *  R  G  S  V  I  K  K  E  L  D  W  Q  E  I  I  S  G  R  I  D  M  P  C  G  K  R  S  T  S  P  R  G  P  D  L  A  K  D  Q  R  R  H  D  F  Y  H  P  L  R  G  T  V  L  F  V  L  C  F  V  I  Y  F  S  G  L  F  S  I  L  C  L  S  D  I  L   </second_frame>
            <third_frame>   R  R  E  F  L  V  S  E  A  S  R  V  E  R  R  R  R  T  M  V  D  R  *  F  G  G  N  *  E  Y  G  G  S  S  *  K  G  H  L  F  G  I  C  W  V  K  R  N  *  A  I  R  P  R  S  S  A  E  A  T  R  R  E  A  R  V  A  P  D  C  *  Y  E  E  I  R  N  *  P  R  E  *  A  S  G  I  F  R  R  H  A  *  D  V  E  I  S  K  S  V  G  *  A  C  T  R  *  V  S  S  R  M  L  E  R  V  Q  R  M  V  E  K  E  S  R  W  N  N  *  A  W  S  K  R  S  S  H  Y  C  R  C  W  S  Q  T  S  S  P  T  S  P  P  S  R  E  V  *  *  E  *  I  R  A  S  T  S  S  F  R  R  C  Q  S  H  S  S  I  E  T  R  T  A  K  G  Q  T  M  H  D  R  V  R  *  *  H  G  A  T  D  S  F  D  R  G  V  Q  S  S  R  R  S  S  I  G  K  R  S  S  L  G  E  *  I  C  H  V  G  R  G  Q  H  R  Q  E  D  Q  T  W  R  R  I  R  G  G  M  I  F  T  I  P  C  V  G  Q  F  Y  L  Y  F  V  L  *  F  I  F  Q  D  Y  F  L  F  Y  V  Y  Q  T  F  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37663" stop="38400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGESFWYPRLRGLREEDVQWSIDSLVVTKNMVVRAEKVTYLVFAGLRGTRPYAPGRVLRQLGGKQELPQIADMRKFVTDHENRRVAFSEDMRRMWRSRRVLGEPVPDRFRPECSSEYKEWLKKSLAGTIEPGPNVPHIIADVGAKHQVRLHRLQEKFDKSELEHQRRHSEDAKVIARLKQELRRARQCMTELDDSMERQIHSIEGFSHQEGARLARDHLWANRYAMWEEVNIAKRTRLGEGSEEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="62822" PGL_stop="62967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62822" e_stop="62967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="62822" e_stop="62967" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATCTTTAGAAGGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCTATCCTAAAGTTGAAACCGAGTTGAAACCGGTAGG</gDNA_template>
            <first_frame> K  I  S  C  *  L  *  L  F  I  M  S  *  *  C  Y  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  S  M  P  R  L  C  Y  P  K  V  E  T  E  L  K  P  V   </first_frame>
            <second_frame>  K  S  L  V  D  Y  N  C  L  S  C  L  N  N  V  I  I  T  I  F  R  R  F  A  T  E  I  F  F  E  *  V  C  P  D  Y  A  I  L  K  L  K  P  S  *  N  R  *  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  L  *  *  P  S  L  E  G  L  L  Q  K  Y  S  S  N  K  Y  A  Q  T  M  L  S  *  S  *  N  R  V  E  T  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0029E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64522" PGL_stop="65288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64522" e_stop="65288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="64522" e_stop="65288" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64522" stop="65288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTAGAAATAAACACAGGAGATATGAATAGACCTAGTACGTCAAGAGTTAAAACTCCAGATAATAGTCCCAAAAATAGTCCTAGAGCTAGTCCTAGATGGACACCACCAACTTATTATACAGAAAGTTATCAGCAATCAGATAGAACTAACGCAATATGGAACAATAGATTAAATAAGAATTGGACACCAAAATCAATAAATGAACAATATAATTTTTTAGATCTAGATTGTGTTACAGACATAAATAAAGCAATATTAATGTGGATAGGAAATATATCTAAGCAACGAATAGATAACAAAATAGAAACAACAAAAACACCGAGATACATAGAAAGAACATTCGTAGGAACAACAAGATTATGGATAGAAAATCTACCCTCAGAAAGTTTAGAAGTACTTAGAAGTGACAAGAAAATAGATGGATCTCCATCAGCAACAAATATAGATATACTAGATAAATATGAGTCAGCAATAAGAAATGAATTTGGAGGTATGACTACAGATATAAGAGAACAAAACAGAGAAAAAATAATAAATAGACAACTTATGACAAAATTAGCTATATGTAAAATGTGTTATATAGAAGAATACACTTGTGCATTTAAAGAATATTATTACAAAGCAAAATACAATTTTGATGAAGCAAAAGAAATAAGAAAACAATATTTTACGAAATTACCAGAGTCATTTAGTACAAAAGTAATAAAAGATTGGAATGATGAAGGATTAGTAGATACCTTAGGAGCTAGAATAAAATTCCTAT</gDNA_template>
            <first_frame> K  I  R  N  K  H  R  R  Y  E  *  T  *  Y  V  K  S  *  N  S  R  *  *  S  Q  K  *  S  *  S  *  S  *  M  D  T  T  N  L  L  Y  R  K  L  S  A  I  R  *  N  *  R  N  M  E  Q  *  I  K  *  E  L  D  T  K  I  N  K  *  T  I  *  F  F  R  S  R  L  C  Y  R  H  K  *  S  N  I  N  V  D  R  K  Y  I  *  A  T  N  R  *  Q  N  R  N  N  K  N  T  E  I  H  R  K  N  I  R  R  N  N  K  I  M  D  R  K  S  T  L  R  K  F  R  S  T  *  K  *  Q  E  N  R  W  I  S  I  S  N  K  Y  R  Y  T  R  *  I  *  V  S  N  K  K  *  I  W  R  Y  D  Y  R  Y  K  R  T  K  Q  R  K  N  N  K  *  T  T  Y  D  K  I  S  Y  M  *  N  V  L  Y  R  R  I  H  L  C  I  *  R  I  L  L  Q  S  K  I  Q  F  *  *  S  K  R  N  K  K  T  I  F  Y  E  I  T  R  V  I  *  Y  K  S  N  K  R  L  E  *  *  R  I  S  R  Y  L  R  S  *  N  K  I  P   </first_frame>
            <second_frame>  K  L  E  I  N  T  G  D  M  N  R  P  S  T  S  R  V  K  T  P  D  N  S  P  K  N  S  P  R  A  S  P  R  W  T  P  P  T  Y  Y  T  E  S  Y  Q  Q  S  D  R  T  N  A  I  W  N  N  R  L  N  K  N  W  T  P  K  S  I  N  E  Q  Y  N  F  L  D  L  D  C  V  T  D  I  N  K  A  I  L  M  W  I  G  N  I  S  K  Q  R  I  D  N  K  I  E  T  T  K  T  P  R  Y  I  E  R  T  F  V  G  T  T  R  L  W  I  E  N  L  P  S  E  S  L  E  V  L  R  S  D  K  K  I  D  G  S  P  S  A  T  N  I  D  I  L  D  K  Y  E  S  A  I  R  N  E  F  G  G  M  T  T  D  I  R  E  Q  N  R  E  K  I  I  N  R  Q  L  M  T  K  L  A  I  C  K  M  C  Y  I  E  E  Y  T  C  A  F  K  E  Y  Y  Y  K  A  K  Y  N  F  D  E  A  K  E  I  R  K  Q  Y  F  T  K  L  P  E  S  F  S  T  K  V  I  K  D  W  N  D  E  G  L  V  D  T  L  G  A  R  I  K  F  L  </second_frame>
            <third_frame>   N  *  K  *  T  Q  E  I  *  I  D  L  V  R  Q  E  L  K  L  Q  I  I  V  P  K  I  V  L  E  L  V  L  D  G  H  H  Q  L  I  I  Q  K  V  I  S  N  Q  I  E  L  T  Q  Y  G  T  I  D  *  I  R  I  G  H  Q  N  Q  *  M  N  N  I  I  F  *  I  *  I  V  L  Q  T  *  I  K  Q  Y  *  C  G  *  E  I  Y  L  S  N  E  *  I  T  K  *  K  Q  Q  K  H  R  D  T  *  K  E  H  S  *  E  Q  Q  D  Y  G  *  K  I  Y  P  Q  K  V  *  K  Y  L  E  V  T  R  K  *  M  D  L  H  Q  Q  Q  I  *  I  Y  *  I  N  M  S  Q  Q  *  E  M  N  L  E  V  *  L  Q  I  *  E  N  K  T  E  K  K  *  *  I  D  N  L  *  Q  N  *  L  Y  V  K  C  V  I  *  K  N  T  L  V  H  L  K  N  I  I  T  K  Q  N  T  I  L  M  K  Q  K  K  *  E  N  N  I  L  R  N  Y  Q  S  H  L  V  Q  K  *  *  K  I  G  M  M  K  D  *  *  I  P  *  E  L  E  *  N  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64523" stop="65287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLEINTGDMNRPSTSRVKTPDNSPKNSPRASPRWTPPTYYTESYQQSDRTNAIWNNRLNKNWTPKSINEQYNFLDLDCVTDINKAILMWIGNISKQRIDNKIETTKTPRYIERTFVGTTRLWIENLPSESLEVLRSDKKIDGSPSATNIDILDKYESAIRNEFGGMTTDIREQNREKIINRQLMTKLAICKMCYIEEYTCAFKEYYYKAKYNFDEAKEIRKQYFTKLPESFSTKVIKDWNDEGLVDTLGARIKFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="69408" PGL_stop="69911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69408" e_stop="69911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="69408" e_stop="69911" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69408" stop="69911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGAAGTTATAGGGATATAACAAACTTATAGCACAACCTAAAACCAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATACAGTATATACATATACCGAAGAAGAAATAATTGGAATACCGGAATTACATAGAGCATTTGTGACATATAAGAGAATTACTAAAGGAAACCTATTTTATATAAAATTCTATACAGCACCAGCTGAGATATTATACGAGGAGATAAAGTCGCCAATACAAGTTGTAAAGATAGGCCTGACCAGAGATATGATTATACCGGAAGAGATAGAGAAACAAATCAAGATATCAAAGATAGAAATACCAAACTTTTATGCGAATAAAAGAATAATTGGAATAGCAACAATTATACAAGAGTTATCCAATAATTATTTAAATGGCAATGCTATTTGGAGTTATTATGCACGAGATCAAGTAATGATTTATTCGAACTCCAAAGAGCTAAGGAAATCAGATATGGATGAAGTCCAGCGATG</gDNA_template>
            <first_frame> P  E  V  I  G  I  *  Q  T  Y  S  T  T  *  N  Q  S  K  F  S  *  N  M  L  *  L  W  T  T  K  Y  S  I  Y  I  Y  R  R  R  N  N  W  N  T  G  I  T  *  S  I  C  D  I  *  E  N  Y  *  R  K  P  I  L  Y  K  I  L  Y  S  T  S  *  D  I  I  R  G  D  K  V  A  N  T  S  C  K  D  R  P  D  Q  R  Y  D  Y  T  G  R  D  R  E  T  N  Q  D  I  K  D  R  N  T  K  L  L  C  E  *  K  N  N  W  N  S  N  N  Y  T  R  V  I  Q  *  L  F  K  W  Q  C  Y  L  E  L  L  C  T  R  S  S  N  D  L  F  E  L  Q  R  A  K  E  I  R  Y  G  *  S  P  A  M </first_frame>
            <second_frame>  Q  K  L  *  G  Y  N  K  L  I  A  Q  P  K  T  S  P  N  L  V  K  T  C  Y  S  Y  G  L  L  N  T  V  Y  T  Y  T  E  E  E  I  I  G  I  P  E  L  H  R  A  F  V  T  Y  K  R  I  T  K  G  N  L  F  Y  I  K  F  Y  T  A  P  A  E  I  L  Y  E  E  I  K  S  P  I  Q  V  V  K  I  G  L  T  R  D  M  I  I  P  E  E  I  E  K  Q  I  K  I  S  K  I  E  I  P  N  F  Y  A  N  K  R  I  I  G  I  A  T  I  I  Q  E  L  S  N  N  Y  L  N  G  N  A  I  W  S  Y  Y  A  R  D  Q  V  M  I  Y  S  N  S  K  E  L  R  K  S  D  M  D  E  V  Q  R   </second_frame>
            <third_frame>   R  S  Y  R  D  I  T  N  L  *  H  N  L  K  P  V  Q  I  *  L  K  H  V  I  A  M  D  Y  *  I  Q  Y  I  H  I  P  K  K  K  *  L  E  Y  R  N  Y  I  E  H  L  *  H  I  R  E  L  L  K  E  T  Y  F  I  *  N  S  I  Q  H  Q  L  R  Y  Y  T  R  R  *  S  R  Q  Y  K  L  *  R  *  A  *  P  E  I  *  L  Y  R  K  R  *  R  N  K  S  R  Y  Q  R  *  K  Y  Q  T  F  M  R  I  K  E  *  L  E  *  Q  Q  L  Y  K  S  Y  P  I  I  I  *  M  A  M  L  F  G  V  I  M  H  E  I  K  *  *  F  I  R  T  P  K  S  *  G  N  Q  I  W  M  K  S  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69421" stop="69909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYNKLIAQPKTSPNLVKTCYSYGLLNTVYTYTEEEIIGIPELHRAFVTYKRITKGNLFYIKFYTAPAEILYEEIKSPIQVVKIGLTRDMIIPEEIEKQIKISKIEIPNFYANKRIIGIATIIQELSNNYLNGNAIWSYYARDQVMIYSNSKELRKSDMDEVQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76104" PGL_stop="72587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76104" e_stop="75801"/>
            <exon e_start="73174" e_stop="72587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.847" acc_prob="0.996" e_score="0.993"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="76104" e_stop="75801" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.847" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75800" i_stop="73175" i_length="2626"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="73174" e_stop="72587" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76104" stop="75801"/>
              <exon start="73174" stop="72595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73086" stop="72587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTAAACCCATGGTGTGGTGTATTGTGACTGAATATGCAAGAGGGGGATCAGTGCGTCAGTTCCTCACAAGGCGGCAAAACCGAGCTGTGCCATTGAAGTTAGCAATTAAGCAGGCCTTACATGTGGCAAGGGGGATGGAGTATGTGCATGGCCTGAATCTGATTCACCGGGATCTGAAATCGGACAATCTACTGATTGCTGCTGACAAGTCAATCAAAATTGCAGATTTCGGTGTTGCTCGAATTGAGGTGCTGACCGAAGGAATGACACCAGAAACTGGCACTTACCGCTGGATGGCTCC : GGAGATGATCCAGCACCGGTCATACACCCAGAAAGTTGATGTTTATAGTTTTGGCATTGTTCTGTGGGAGCTCATAACTGGGTTGCTTCCTTTCCAGAACATGACTGCTGTGCAGGCTGCTTTTGCTGTTGTCAACAAAGGCGTCCGTCCAACAATCCCCATTGATTGTTTGCCTGTCTTATCTGATATCATGACCTGCTGCTGGGATTCTGACCCCAATAATAGGCCAACTTTCTCTCAGGTTGTCAAGATGCTTGAGGCAGCTGAGACAGAAATCATGACCAATATCAGAAAGGCACGTTTCAGGTGCTGCATTCATCCTACCGCTACAGGTTGATTCGGGAAAGAGGAAACTGGAGGCAAAAAAAATGTTGAATGGTAAAACTGATTTTGAGTCTGCCATGTGTATCTATTCGGCACAATTTCTTTTCAGATAGAAAAAGGGTTATAATTATGAGAAAAAACTAAACATTTCTCCTGTATTTTGTATCTTTTCCTTAAAACCGTGGATTTAAGACAGCGACTCGTTGTTAATACAGGATATCTGATGTGCATCTATGCATGTCAGATTTTGGCTTTGTTTGCTGA</gDNA_template>
            <first_frame> A  V  N  P  W  C  G  V  L  *  L  N  M  Q  E  G  D  Q  C  V  S  S  S  Q  G  G  K  T  E  L  C  H  *  S  *  Q  L  S  R  P  Y  M  W  Q  G  G  W  S  M  C  M  A  *  I  *  F  T  G  I  *  N  R  T  I  Y  *  L  L  L  T  S  Q  S  K  L  Q  I  S  V  L  L  E  L  R  C  *  P  K  E  *  H  Q  K  L  A  L  T  A  G  W  L   : R  R  *  S  S  T  G  H  T  P  R  K  L  M  F  I  V  L  A  L  F  C  G  S  S  *  L  G  C  F  L  S  R  T  *  L  L  C  R  L  L  L  L  L  S  T  K  A  S  V  Q  Q  S  P  L  I  V  C  L  S  Y  L  I  S  *  P  A  A  G  I  L  T  P  I  I  G  Q  L  S  L  R  L  S  R  C  L  R  Q  L  R  Q  K  S  *  P  I  S  E  R  H  V  S  G  A  A  F  I  L  P  L  Q  V  D  S  G  K  R  K  L  E  A  K  K  M  L  N  G  K  T  D  F  E  S  A  M  C  I  Y  S  A  Q  F  L  F  R  *  K  K  G  Y  N  Y  E  K  K  L  N  I  S  P  V  F  C  I  F  S  L  K  P  W  I  *  D  S  D  S  L  L  I  Q  D  I  *  C  A  S  M  H  V  R  F  W  L  C  L  L  </first_frame>
            <second_frame>  P  *  T  H  G  V  V  Y  C  D  *  I  C  K  R  G  I  S  A  S  V  P  H  K  A  A  K  P  S  C  A  I  E  V  S  N  *  A  G  L  T  C  G  K  G  D  G  V  C  A  W  P  E  S  D  S  P  G  S  E  I  G  Q  S  T  D  C  C  *  Q  V  N  Q  N  C  R  F  R  C  C  S  N  *  G  A  D  R  R  N  D  T  R  N  W  H  L  P  L  D  G  S  :  G  D  D  P  A  P  V  I  H  P  E  S  *  C  L  *  F  W  H  C  S  V  G  A  H  N  W  V  A  S  F  P  E  H  D  C  C  A  G  C  F  C  C  C  Q  Q  R  R  P  S  N  N  P  H  *  L  F  A  C  L  I  *  Y  H  D  L  L  L  G  F  *  P  Q  *  *  A  N  F  L  S  G  C  Q  D  A  *  G  S  *  D  R  N  H  D  Q  Y  Q  K  G  T  F  Q  V  L  H  S  S  Y  R  Y  R  L  I  R  E  R  G  N  W  R  Q  K  K  C  *  M  V  K  L  I  L  S  L  P  C  V  S  I  R  H  N  F  F  S  D  R  K  R  V  I  I  M  R  K  N  *  T  F  L  L  Y  F  V  S  F  P  *  N  R  G  F  K  T  A  T  R  C  *  Y  R  I  S  D  V  H  L  C  M  S  D  F  G  F  V  C  * </second_frame>
            <third_frame>   R  K  P  M  V  W  C  I  V  T  E  Y  A  R  G  G  S  V  R  Q  F  L  T  R  R  Q  N  R  A  V  P  L  K  L  A  I  K  Q  A  L  H  V  A  R  G  M  E  Y  V  H  G  L  N  L  I  H  R  D  L  K  S  D  N  L  L  I  A  A  D  K  S  I  K  I  A  D  F  G  V  A  R  I  E  V  L  T  E  G  M  T  P  E  T  G  T  Y  R  W  M  A  P :   E  M  I  Q  H  R  S  Y  T  Q  K  V  D  V  Y  S  F  G  I  V  L  W  E  L  I  T  G  L  L  P  F  Q  N  M  T  A  V  Q  A  A  F  A  V  V  N  K  G  V  R  P  T  I  P  I  D  C  L  P  V  L  S  D  I  M  T  C  C  W  D  S  D  P  N  N  R  P  T  F  S  Q  V  V  K  M  L  E  A  A  E  T  E  I  M  T  N  I  R  K  A  R  F  R  C  C  I  H  P  T  A  T  G  *  F  G  K  E  E  T  G  G  K  K  N  V  E  W  *  N  *  F  *  V  C  H  V  Y  L  F  G  T  I  S  F  Q  I  E  K  G  L  *  L  *  E  K  T  K  H  F  S  C  I  L  Y  L  F  L  K  T  V  D  L  R  Q  R  L  V  V  N  T  G  Y  L  M  C  I  Y  A  C  Q  I  L  A  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76102" stop="75801"/>
                    <exon start="73174" stop="72838"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKPMVWCIVTEYARGGSVRQFLTRRQNRAVPLKLAIKQALHVARGMEYVHGLNLIHRDLKSDNLLIAADKSIKIADFGVARIEVLTEGMTPETGTYRWMAPEMIQHRSYTQKVDVYSFGIVLWELITGLLPFQNMTAVQAAFAVVNKGVRPTIPIDCLPVLSDIMTCCWDSDPNNRPTFSQVVKMLEAAETEIMTNIRKARFRCCIHPTATG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="77922" PGL_stop="76237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77922" e_stop="77839"/>
            <exon e_start="76763" e_stop="76237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77922" e_stop="77839" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77838" i_stop="76764" i_length="1075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76763" e_stop="76237" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77922" stop="77839"/>
              <exon start="76763" stop="76246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77921" stop="77839"/>
              <exon start="76763" stop="76309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77920" stop="77839"/>
              <exon start="76763" stop="76237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77873" stop="77839"/>
              <exon start="76763" stop="76266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTTCTCCGGAGCTCCGGTGGTCGGAAAGTTGATCGGCGTCGGAAAACAAGTAGAATTATAAACTTATAATCACAATCGAG : GGTCTGTGGAGGTGTGGTTTGATTCTAGAAATCCCCGTGCAAAAGAAATAAGTCGGATTGAAACTTTTCTGCTGTAGCTGCCTCATCAGAAAAAATGATGGAGGCTCCAAAATCTGTTGGACTTACAGACTTGAATCAAAACCTGTCGCAGAACTTTTACTATAAGCTTGGCGAGGGGTCAAACATGTCTACGGAAAGTTATGGGATGAGCAATGCTGGAGGTTCTGTTACAATGTCGGTTGATAACAGCAGTGTTGGATCAAATGATTCTCACACTCATATTTTAAACCACCAGTACAACCACATCCACAATAACTATTCTGTTGCTGCTAGCGTAGTCAGGGGGAGAGTTTCTAGATTGAGCGATGATGCCCTCGCTCAAGCCTTGGTTGATCCTCAGTTCCCCACCATTGGGCTTGAGATTTATGATGAGTGGACAATTGACTTGAGGAGGCTTACCATTGGACAAGCTTTTGCTCAAGGATCTTTTGGGAAACTGTATAAGGGAACTTATAATGGTGAAGATG</gDNA_template>
            <first_frame> D  F  S  P  E  L  R  W  S  E  S  *  S  A  S  E  N  K  *  N  Y  K  L  I  I  T  I  E  :  G  L  W  R  C  G  L  I  L  E  I  P  V  Q  K  K  *  V  G  L  K  L  F  C  C  S  C  L  I  R  K  N  D  G  G  S  K  I  C  W  T  Y  R  L  E  S  K  P  V  A  E  L  L  L  *  A  W  R  G  V  K  H  V  Y  G  K  L  W  D  E  Q  C  W  R  F  C  Y  N  V  G  *  *  Q  Q  C  W  I  K  *  F  S  H  S  Y  F  K  P  P  V  Q  P  H  P  Q  *  L  F  C  C  C  *  R  S  Q  G  E  S  F  *  I  E  R  *  C  P  R  S  S  L  G  *  S  S  V  P  H  H  W  A  *  D  L  *  *  V  D  N  *  L  E  E  A  Y  H  W  T  S  F  C  S  R  I  F  W  E  T  V  *  G  N  L  *  W  *  R   </first_frame>
            <second_frame>  I  F  L  R  S  S  G  G  R  K  V  D  R  R  R  K  T  S  R  I  I  N  L  *  S  Q  S  R :   V  C  G  G  V  V  *  F  *  K  S  P  C  K  R  N  K  S  D  *  N  F  S  A  V  A  A  S  S  E  K  M  M  E  A  P  K  S  V  G  L  T  D  L  N  Q  N  L  S  Q  N  F  Y  Y  K  L  G  E  G  S  N  M  S  T  E  S  Y  G  M  S  N  A  G  G  S  V  T  M  S  V  D  N  S  S  V  G  S  N  D  S  H  T  H  I  L  N  H  Q  Y  N  H  I  H  N  N  Y  S  V  A  A  S  V  V  R  G  R  V  S  R  L  S  D  D  A  L  A  Q  A  L  V  D  P  Q  F  P  T  I  G  L  E  I  Y  D  E  W  T  I  D  L  R  R  L  T  I  G  Q  A  F  A  Q  G  S  F  G  K  L  Y  K  G  T  Y  N  G  E  D  </second_frame>
            <third_frame>   F  F  S  G  A  P  V  V  G  K  L  I  G  V  G  K  Q  V  E  L  *  T  Y  N  H  N  R   : G  S  V  E  V  W  F  D  S  R  N  P  R  A  K  E  I  S  R  I  E  T  F  L  L  *  L  P  H  Q  K  K  *  W  R  L  Q  N  L  L  D  L  Q  T  *  I  K  T  C  R  R  T  F  T  I  S  L  A  R  G  Q  T  C  L  R  K  V  M  G  *  A  M  L  E  V  L  L  Q  C  R  L  I  T  A  V  L  D  Q  M  I  L  T  L  I  F  *  T  T  S  T  T  T  S  T  I  T  I  L  L  L  L  A  *  S  G  G  E  F  L  D  *  A  M  M  P  S  L  K  P  W  L  I  L  S  S  P  P  L  G  L  R  F  M  M  S  G  Q  L  T  *  G  G  L  P  L  D  K  L  L  L  K  D  L  L  G  N  C  I  R  E  L  I  M  V  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76702" stop="76238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSAVAASSEKMMEAPKSVGLTDLNQNLSQNFYYKLGEGSNMSTESYGMSNAGGSVTMSVDNSSVGSNDSHTHILNHQYNHIHNNYSVAASVVRGRVSRLSDDALAQALVDPQFPTIGLEIYDEWTIDLRRLTIGQAFAQGSFGKLYKGTYNGED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="80868" PGL_stop="80065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80868" e_stop="80692"/>
            <exon e_start="80610" e_stop="80065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.900" e_score="0.921"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="80868" e_stop="80692" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.900">
            <gDNA_intron_boundary i_start="80691" i_stop="80611" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="80610" e_stop="80065" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80868" stop="80692"/>
              <exon start="80610" stop="80065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTAAATTTTAGTCGTTTTCCTTTCTTTTTTTTTCTTATTCAACAATTCTATATGTATTGTGTTTCTTACGTTTTTTTTATATTTATTTGATGAAATAATCGATTGTTTGTTCTTATTAGATCTCAAATTAGTCACATAATGAATGAATCATCTTCATCTATGAGGATTATCAGAG : GGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAATATGACCCTAGGGCAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGCAGTAAACATTGATTCAGATGAAAATGCATGTGAAGTTGACGGATCTGAAAAACATCATAATTATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATATACAAAAAATTATTGCTTAAGTAAATTTTGTAATCACGTAATTGTATATAGTATATTGCATGTTTAGTACAGACATGTTTTAGTTATATATTTGTATATGTGTCTGTGGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAGATTGTATATTAAAGGCTTATTATTATTTTTATTTTTTGTATATATATACAAAAAGTAATTGAACTTAGTTATACATATGGAAAAAT</gDNA_template>
            <first_frame> S  *  I  L  V  V  F  L  S  F  F  F  L  F  N  N  S  I  C  I  V  F  L  T  F  F  L  Y  L  F  D  E  I  I  D  C  L  F  L  L  D  L  K  L  V  T  *  *  M  N  H  L  H  L  *  G  L  S  E  :  G  L  W  *  N  Q  N  K  F  N  M  N  K  Q  W  K  N  *  D  Q  R  K  N  M  T  L  G  Q  F  K  K  L  L  T  M  L  K  L  E  A  L  K  L  Y  K  E  E  E  R  G  K  Q  *  T  L  I  Q  M  K  M  H  V  K  L  T  D  L  K  N  I  I  I  M  R  *  W  L  K  T  Q  I  *  I  Q  F  F  C  Y  L  D  V  N  I  Q  K  I  I  A  *  V  N  F  V  I  T  *  L  Y  I  V  Y  C  M  F  S  T  D  M  F  *  L  Y  I  C  I  C  V  C  G  F  D  Y  F  I  H  T  L  S  Y  V  *  *  I  I  Y  *  V  L  I  V  V  V  A  D  C  I  L  K  A  Y  Y  Y  F  Y  F  L  Y  I  Y  T  K  S  N  *  T  *  L  Y  I  W  K  N </first_frame>
            <second_frame>  P  K  F  *  S  F  S  F  L  F  F  S  Y  S  T  I  L  Y  V  L  C  F  L  R  F  F  Y  I  Y  L  M  K  *  S  I  V  C  S  Y  *  I  S  N  *  S  H  N  E  *  I  I  F  I  Y  E  D  Y  Q  R :   V  Y  G  K  I  K  T  S  S  T  *  T  N  N  G  R  I  E  I  K  E  K  I  *  P  *  G  S  S  R  S  Y  *  Q  C  *  S  *  R  H  *  N  C  T  R  R  K  K  E  E  S  S  K  H  *  F  R  *  K  C  M  *  S  *  R  I  *  K  T  S  *  L  *  G  S  G  L  K  H  K  F  R  Y  N  F  F  V  T  *  M  S  I  Y  K  K  L  L  L  K  *  I  L  *  S  R  N  C  I  *  Y  I  A  C  L  V  Q  T  C  F  S  Y  I  F  V  Y  V  S  V  D  L  I  T  L  Y  I  L  *  V  M  Y  N  E  *  Y  T  K  S  *  *  W  *  *  Q  I  V  Y  *  R  L  I  I  I  F  I  F  C  I  Y  I  Q  K  V  I  E  L  S  Y  T  Y  G  K   </second_frame>
            <third_frame>   L  N  F  S  R  F  P  F  F  F  F  L  I  Q  Q  F  Y  M  Y  C  V  S  Y  V  F  F  I  F  I  *  *  N  N  R  L  F  V  L  I  R  S  Q  I  S  H  I  M  N  E  S  S  S  S  M  R  I  I  R   : G  S  M  V  K  S  K  Q  V  Q  H  E  Q  T  M  E  E  L  R  S  K  K  K  Y  D  P  R  A  V  Q  E  V  I  N  N  A  K  A  R  G  I  K  I  V  Q  G  G  R  K  R  K  A  V  N  I  D  S  D  E  N  A  C  E  V  D  G  S  E  K  H  H  N  Y  E  V  V  A  *  N  T  N  L  D  T  I  F  L  L  L  R  C  Q  Y  T  K  N  Y  C  L  S  K  F  C  N  H  V  I  V  Y  S  I  L  H  V  *  Y  R  H  V  L  V  I  Y  L  Y  M  C  L  W  I  *  L  L  Y  T  Y  F  K  L  C  I  M  N  N  I  L  S  L  N  S  G  S  S  R  L  Y  I  K  G  L  L  L  F  L  F  F  V  Y  I  Y  K  K  *  L  N  L  V  I  H  M  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80773" stop="80692"/>
                    <exon start="80610" stop="80378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNRLFVLIRSQISHIMNESSSSMRIIRGSMVKSKQVQHEQTMEELRSKKKYDPRAVQEVINNAKARGIKIVQGGRKRKAVNIDSDENACEVDGSEKHHNYEVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81893" PGL_stop="82598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81893" e_stop="82335"/>
            <exon e_start="82579" e_stop="82598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.087" e_score="0.919"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="81893" e_stop="82335" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.087">
            <gDNA_intron_boundary i_start="82336" i_stop="82578" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="82579" e_stop="82598" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81893" stop="82335"/>
              <exon start="82579" stop="82598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTCTCTCTTTAAACTAAGGAATGTAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTAAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACTCCTAAATATTTTTTTTTAAAAAAATAGAACTAATAAATATAAATTTAAAATTAATTTTTTAACTTCCCTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGTCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGTCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCTT : GTTTTTTCAATATTTCTTCC</gDNA_template>
            <first_frame> S  L  *  M  I  K  F  F  L  R  I  Q  N  *  I  T  I  H  T  K  K  I  V  *  F  F  L  S  L  N  *  G  M  *  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  K  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  L  K  K  *  N  *  *  I  *  I  *  N  *  F  F  N  F  P  *  M  K  G  I  C  E  P  F  C  N  V  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  V  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L :   F  F  Q  Y  F  F  </first_frame>
            <second_frame>  H  C  R  *  S  N  F  F  F  E  Y  K  I  K  L  Q  Y  T  Q  K  K  *  F  N  F  F  S  L  *  T  K  E  C  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  L  L  N  I  F  F  *  K  N  R  T  N  K  Y  K  F  K  I  N  F  L  T  S  L  K  *  R  V  Y  V  S  H  F  V  T  S  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  S  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P   : C  F  F  N  I  S  S </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  S  L  F  K  L  R  N  V  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  *  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  S  *  I  F  F  F  K  K  I  E  L  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  L  :  V  F  S  I  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0029E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91780" PGL_stop="92258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91780" e_stop="92258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="91780" e_stop="92258" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="92017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91781" stop="92258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACAAGAGGATTAATGAATATGAGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTATCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATAATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGACTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> T  Q  E  D  *  *  I  *  G  I  G  V  S  R  T  N  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  K  R  I  N  E  Y  E  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  I  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  T  V  N  N  I  V  F  V  V  A  T  C  *  V  S  *  L  T  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  R  G  L  M  N  M  R  D  R  S  V  T  Y  Q  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  S  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  I  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  L  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92043" stop="92258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 218 chains have been computed
$ 
$ memory statistics:
$ 113656 bytes spliced alignments in total
$ 61 spliced alignments have been stored
$ 1863 bytes was the average size of a spliced alignment
$ 22568 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1504 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 279 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:20:58
-->
