<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 08:44:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416723" ref_strand="+" ref_description="SGN-E416723 [STM-23-D11]">
      <seq>ctatggctcctctcaaaattctcctctgtggtgatgtactcggccgtctcaatcagctattcaaacgcgtttcttcggtgaacaaggcagctggtccatttgatgctcttctttgcgtaggccaattttttcctgattcggtagaggggattgaggaattcaatggctacattgaggggcgttccaagattccgatgccgacctatttcattggtgattatggtgcagggtccccaaaaatattgtcagaagcattgaaggacccgagtaacaaagggtttaagatggagggtttaagagtctgtgacaatttgtactggttgaaaggaagtgggaagtttagccttcatgggttatctgtggcatacttatctggtaggcaaactccaagtggaactcaatttggaacatatagtcaagatgatgttgatgctttgagggctttagcagaggatccaggaacagtagacatctttctgactaatgagtggcccagtggagtaacaaatggaacgacatcaaaagctcttgtagaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatcatgttgcaagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="4123" stop="17"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3823" g_stop="3747" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3746" i_stop="2486" i_length="1261">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2485" g_stop="2212" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="351" r_length="274" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2211" i_stop="670" i_length="1542">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="669" g_stop="540" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="481" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="539" i_stop="443" i_length="97">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="442" g_stop="326" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="598" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E416723" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3823" e_stop="3747"/>
          <exon e_start="2485" e_stop="2212"/>
          <exon e_start="669" e_stop="540"/>
          <exon e_start="442" e_stop="326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCGGTTCGTCTTCTTCTTTAATTTCATATATATCATGTTTGTATTCATATAATAGATAGATTACAGAGGCGGATGCACAGTATTGGTACCGAGTTCATTTGAATCCAATACTTTTGATACGTAGAAGTAATTTATGTGTAAAATCCACGAAAAATGCTTCAAAGAGAATACATAACTTTGAAAATACTGTGGGAGTAATGCTAAGCACCTTTAAGAGTATCCATAAAGTTTAAATTGTGCTCTAGATAGTTTGCTGACTTTAAGTTCTGGATTTGGTATAGTGTAAATATGAATTACTTAGTTTAGAGCCGAGATATGTTGTGATTACTTAGTTTAGAGCTGAGTTTGTGGAGGTTGTGTGATTTCAGGTTAGAGATAGAAGGTTAGTAGATAGTGTTGATACTTAGAAGCTATTGGAAAATGTCAATTCTAGTATACTTAGTTTCAGTTTATTATAGTTTGTACATTGTATATATATATGGAACTTAGCATATAGTAAGTACACATGGGTCTTTACAGATGAAATGAAAGGTTCTTTGTCTCTCCCCATTCCACTGACTCCATGACAAGATATCTCGATTTCTCATTTGAATCTGAAGTGTAACAGATTGTAGTGTCTTATTTCGCAATCCATCCATCCATCCATCCTATTAGTTGTAGTTTCTTGCTCTTCTATGGATAAGAGGTGGGGAAGACACAAAGTAGGCTAGAAGGTTAGTAGATAGTAGTGTGTTGTCAAGCTATCTGTCCATCTTAGAAGTCGTAGTTTCTTTCCCTTGGATAGATAGGAGGTCGTGGAGAACACAAGTGAGATATAGTAGTGTGTTGTCAAGCTAGCCGTCCATTTTAGTAGTCGTAGCTTCTTGCCCTTTGATAGATAGAAGGTCATGGAGGAACAATTAGGCTAGAAGGTTAGTATATAGAAGTGTGTTGTCTCGCTATCTGTCCATCCTAGTAGTCGTAGTTTCTAGCCCTTCGATTCCTGATGCTTTCTGTTTTTTTTTGTGTATATTGATGACCATATTATTTTGTCGTAGTAACTGCTCAGTATGCTTTGTTATGCTTTCACTTACATTACTTCTCTTTGGATTGCTTGGGACTGTTCATTTCTCGAGTCGAGGGTCTATCAGAACCAACCTCTCTACTTCTGAGGTAGGGGTAAGGTCTACATGCATTCTACCCTCCCCAGACTCCACCTTGTGGGACTACATTGGGTATGTTGTTGTTGTTGTTGTAATTTAGAGCTGAACTTGAACTCTTTCAGGTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATGGTAAGCACTAACCAGCACCTCGTTTTTCTTTTTATTCCAATTTGCTTAATGAAAGTGAAAGACTTAGTGTACGGACTGAACAGGCTGCTTAGAAGTTTGTGTCTGCATCCACTTCTTTTTCTTCATAATTGTGGTGTCCTGGCTAGCTTGAGCTCTTTCGCGGAAAAAACACTCCCATTTTTCCCTCGGCTAGAATTTGAACCCGAGACCTCATGGTTCAGCCTACTTTGTTAACCACTAGGCCACACCCTGTGGTGTTTTTTGCATCTACTCTACTAGGGGTGGTGTGTGTATGTATATTACATATTTTTGTATAGTTGGAAATGTCTATTGACTGGACAAGTATGCACACCTCTACTATTTCACCTGGTGCCTGCTCCTGCCACTAACGCAATTTCACATAGCTTTACCCAAGGCTTAGACCGGTGGAATGAAATGACCTTGCTCTTGTTTCTTCTGGGATATATACCCTGGTCTTCATATGGTCTTTTCCGGCTTCATTATAGTTAAGCCTCATTTATACATGCTTAAAAGATGTATGTTATAGAATGTTTGTATTTGTTGCTACAAAAGAATGGTGGCTTGTACACACACGCACTCACAATATTTAATCCGGCTTGGTGGATAGGGATAGATAGGGGAGCATTTGGATAATATTTAAAGTTGTTGGGCAAAGCAGATGGGTGCACCTTTTACAAAATGACTTTGTTAAATGCAGTTTATCATTTCCTTGTTCAAACTTGTACTGTTTGGTCTAGCAGTTCACACATGTAGCAAGAATGAAATCTTGGCGCAGATATATTGAAAGCTGTTAAGTCTTTAAAACTATTAGCTAAAAATTCTCTATAGAAGTTGGTAAAAAAAAGGGTTGTATTGTCTCCTACCTCTCTGTGGTATTGAACAAAAGCCTATGTCATTGCTTACAGAAGCCAAATGGACTATATGTTGCTAAATTATTATTCCAATGTTGTATTGAATTAAAGATAGTAGGCAGTTGCACCATTTCCAAGTTATACATTGTGAGATGCTGATGTCTATGATTTGAAAAATGGAACTTTTCATGAGAGTATCTAAGCACCGTGCAATTTTACATATCCAACAGAAAATAAAATGTGAGCACATCCAAACATCACACAATGTATCTTAATTTCGTGGAGTTGTGTACCTTTTTTGCTTAATTGGCTAGTTTGTTTCAATTCATTCTGGATTGAGGCGCAGTTGGTTGTCCAATTGATGTTATTGGTTATTATTTTCGTATTCAATGTTATATTGTAATAACTGCACCCAGTTCACGATAACCCTGGGGTTTACCCTAATTTTGGAAAGTTCATCCTATTGATTGGTTAGTTTGCTTTGTGAGAATAGAATCTCACCAAACAGGGTGTGTCTAAGCTCATGTTTTTGGAATGGTGAGACTGAAAGAGATTTGGATTTCATATTATGTCTGCGCATCGAATTACAGTTTTCTTATATGGAGGTGCATGACTCAACAATTATATTTTTTGTTGGATATGATAGCTGATATACTGTACTCATGTTTAGGGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTACATATCCTTTGATTTTATATTGATCTTCGTCATTTTCTTCACCCCCCCTATTGCAAGTACTCTATACAATCTCTTTGATTTCCTTAATAAAAAAACACTAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</genome_strand>
        <mrna_strand>CTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCAGCTATTCAAACGCGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCGGTAGAGGGGATTGAGGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATGCCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTGAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGTGGCATACTTATCTGGTAGGCAAACTCCAAGTGGAACTCAATTTGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGGAACAGTAGACATCTTTCTGAC.................................................................................................TAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCTTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210191" ref_strand="+" ref_description="SGN-E210191 [cLEC-40-M1]">
      <seq>tctgtggtgatgtactcggccgtctcaatcatctattcaaacgcgtttcttcggtgaacaaggcagctggtccatttgatgctcttctttgcgtaggccaattttttcctgattcagttgaggggattgatgaattcaatggctacattgaggggcgttccaagattccgataccgacctatttcattggtgattatggtgcagggtccccaaaaatattgtcagaagcattaaaggacccgagtaacaaagggtttaagatggagggtttaagagtctgtgacaatttgtactggttgaaaggaagcgggacgtttagccttaatgggttatctgtggcatacttatctggtaggcgaactccaagtggaactcaattcggaacatatagtcaagatgatgttgatgctttgagggctttagcagaggatccagtaacagtagacatctttcttactaatgagtggcccactggagtaacaaatggaacgacatcaaaagctcctgtcgaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="4099" stop="18"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3799" g_stop="3747" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3746" i_stop="2486" i_length="1261">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2485" g_stop="2212" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="327" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2211" i_stop="670" i_length="1542">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="669" g_stop="540" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="457" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="539" i_stop="443" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="442" g_stop="326" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="574" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E210191" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3799" e_stop="3747"/>
          <exon e_start="2485" e_stop="2212"/>
          <exon e_start="669" e_stop="540"/>
          <exon e_start="442" e_stop="326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCGGTTCGTCTTCTTCTTTAATTTCATATATATCATGTTTGTATTCATATAATAGATAGATTACAGAGGCGGATGCACAGTATTGGTACCGAGTTCATTTGAATCCAATACTTTTGATACGTAGAAGTAATTTATGTGTAAAATCCACGAAAAATGCTTCAAAGAGAATACATAACTTTGAAAATACTGTGGGAGTAATGCTAAGCACCTTTAAGAGTATCCATAAAGTTTAAATTGTGCTCTAGATAGTTTGCTGACTTTAAGTTCTGGATTTGGTATAGTGTAAATATGAATTACTTAGTTTAGAGCCGAGATATGTTGTGATTACTTAGTTTAGAGCTGAGTTTGTGGAGGTTGTGTGATTTCAGGTTAGAGATAGAAGGTTAGTAGATAGTGTTGATACTTAGAAGCTATTGGAAAATGTCAATTCTAGTATACTTAGTTTCAGTTTATTATAGTTTGTACATTGTATATATATATGGAACTTAGCATATAGTAAGTACACATGGGTCTTTACAGATGAAATGAAAGGTTCTTTGTCTCTCCCCATTCCACTGACTCCATGACAAGATATCTCGATTTCTCATTTGAATCTGAAGTGTAACAGATTGTAGTGTCTTATTTCGCAATCCATCCATCCATCCATCCTATTAGTTGTAGTTTCTTGCTCTTCTATGGATAAGAGGTGGGGAAGACACAAAGTAGGCTAGAAGGTTAGTAGATAGTAGTGTGTTGTCAAGCTATCTGTCCATCTTAGAAGTCGTAGTTTCTTTCCCTTGGATAGATAGGAGGTCGTGGAGAACACAAGTGAGATATAGTAGTGTGTTGTCAAGCTAGCCGTCCATTTTAGTAGTCGTAGCTTCTTGCCCTTTGATAGATAGAAGGTCATGGAGGAACAATTAGGCTAGAAGGTTAGTATATAGAAGTGTGTTGTCTCGCTATCTGTCCATCCTAGTAGTCGTAGTTTCTAGCCCTTCGATTCCTGATGCTTTCTGTTTTTTTTTGTGTATATTGATGACCATATTATTTTGTCGTAGTAACTGCTCAGTATGCTTTGTTATGCTTTCACTTACATTACTTCTCTTTGGATTGCTTGGGACTGTTCATTTCTCGAGTCGAGGGTCTATCAGAACCAACCTCTCTACTTCTGAGGTAGGGGTAAGGTCTACATGCATTCTACCCTCCCCAGACTCCACCTTGTGGGACTACATTGGGTATGTTGTTGTTGTTGTTGTAATTTAGAGCTGAACTTGAACTCTTTCAGGTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATGGTAAGCACTAACCAGCACCTCGTTTTTCTTTTTATTCCAATTTGCTTAATGAAAGTGAAAGACTTAGTGTACGGACTGAACAGGCTGCTTAGAAGTTTGTGTCTGCATCCACTTCTTTTTCTTCATAATTGTGGTGTCCTGGCTAGCTTGAGCTCTTTCGCGGAAAAAACACTCCCATTTTTCCCTCGGCTAGAATTTGAACCCGAGACCTCATGGTTCAGCCTACTTTGTTAACCACTAGGCCACACCCTGTGGTGTTTTTTGCATCTACTCTACTAGGGGTGGTGTGTGTATGTATATTACATATTTTTGTATAGTTGGAAATGTCTATTGACTGGACAAGTATGCACACCTCTACTATTTCACCTGGTGCCTGCTCCTGCCACTAACGCAATTTCACATAGCTTTACCCAAGGCTTAGACCGGTGGAATGAAATGACCTTGCTCTTGTTTCTTCTGGGATATATACCCTGGTCTTCATATGGTCTTTTCCGGCTTCATTATAGTTAAGCCTCATTTATACATGCTTAAAAGATGTATGTTATAGAATGTTTGTATTTGTTGCTACAAAAGAATGGTGGCTTGTACACACACGCACTCACAATATTTAATCCGGCTTGGTGGATAGGGATAGATAGGGGAGCATTTGGATAATATTTAAAGTTGTTGGGCAAAGCAGATGGGTGCACCTTTTACAAAATGACTTTGTTAAATGCAGTTTATCATTTCCTTGTTCAAACTTGTACTGTTTGGTCTAGCAGTTCACACATGTAGCAAGAATGAAATCTTGGCGCAGATATATTGAAAGCTGTTAAGTCTTTAAAACTATTAGCTAAAAATTCTCTATAGAAGTTGGTAAAAAAAAGGGTTGTATTGTCTCCTACCTCTCTGTGGTATTGAACAAAAGCCTATGTCATTGCTTACAGAAGCCAAATGGACTATATGTTGCTAAATTATTATTCCAATGTTGTATTGAATTAAAGATAGTAGGCAGTTGCACCATTTCCAAGTTATACATTGTGAGATGCTGATGTCTATGATTTGAAAAATGGAACTTTTCATGAGAGTATCTAAGCACCGTGCAATTTTACATATCCAACAGAAAATAAAATGTGAGCACATCCAAACATCACACAATGTATCTTAATTTCGTGGAGTTGTGTACCTTTTTTGCTTAATTGGCTAGTTTGTTTCAATTCATTCTGGATTGAGGCGCAGTTGGTTGTCCAATTGATGTTATTGGTTATTATTTTCGTATTCAATGTTATATTGTAATAACTGCACCCAGTTCACGATAACCCTGGGGTTTACCCTAATTTTGGAAAGTTCATCCTATTGATTGGTTAGTTTGCTTTGTGAGAATAGAATCTCACCAAACAGGGTGTGTCTAAGCTCATGTTTTTGGAATGGTGAGACTGAAAGAGATTTGGATTTCATATTATGTCTGCGCATCGAATTACAGTTTTCTTATATGGAGGTGCATGACTCAACAATTATATTTTTTGTTGGATATGATAGCTGATATACTGTACTCATGTTTAGGGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTACATATCCTTTGATTTTATATTGATCTTCGTCATTTTCTTCACCCCCCCTATTGCAAGTACTCTATACAATCTCTTTGATTTCCTTAATAAAAAAACACTAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</genome_strand>
        <mrna_strand>TCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGCGGGACGTTTAGCCTTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC.................................................................................................TAATGAGTGGCCCACTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTCGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341509" ref_strand="-" ref_description="SGN-E341509 [cTOE-23-N24]">
      <seq>aaagaatttttaattaggttttcatcaataaatagtgcgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctataaggctatagggtggtaaaaggtgacagatatttcgtgaaatcagttaaactatgtaaaagctgattcgaacatcagaatcgttaagggtaggagggagggttgtaagtttttaattgttggagttgatgcatttttattttattttattttggtgtgttagaaagataaattagatgatgtaaagcttttttagctaccatttaattataatatgtgaagtttgttttttatanacccccaaaaaaaaaaaacaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6405" stop="5442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6105" g_stop="5741" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="389"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E341509" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6105" e_stop="5741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</genome_strand>
        <mrna_strand>AAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTGCGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGCATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397817" ref_strand="+" ref_description="SGN-E397817 [TUS-24-K2](-)">
      <seq>aacaagacaaatggacccatacttgtttacccaacaagtaggaaaagatgggatgataggatgtcagcaataataccagaagaagaaacattttattgtgtgggacttttacattcttcaagtggatataatgaatgcaaaattttggataatcaaaatgaagaaatattaaattattgtgataaagttggcctcaatataaagcaatatcttccacattacaagacaaaagaggattggatcaaacattttggtaaaaaatggaatatttttcaacaaagaaaagatttatttgatccaaagatgattctatcaccaggacaaagaatttttaattaggttttcatcaataaatagtacgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctataaggctatagggtggtaaaaggtgacagatatttcgtgaaatcagttaaactatgtaaaagctgattcgaacatcagaatcgttaagggtaggagggagggttgtaagtttttaattgttggagttgatgtatttttattttattttattttggtgtgttagaaagataaattagatgatgtaaagcttttttagctaccatttaattataataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7568" stop="5462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7268" g_stop="7222" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6380" g_stop="5763" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="665" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="687"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E397817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7268" e_stop="7222"/>
          <exon e_start="6380" e_stop="5763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAAT</genome_strand>
        <mrna_strand>AACAAGACAAATGGACCCATACTTGTTTACCCAACAAGTAGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATTTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317824" ref_strand="+" ref_description="SGN-E317824 [cTOA-30-F5]">
      <seq>aaaaagctttacatcatctaatttatctttctaacacaccaaaataaaataaaataaaaatacatcaactccaacaattaaaaacttacaaccctccctcctacccttaacgattctgatgttcgaatcagcttttacatagtttaactgatttcacgaaatatctgtcaccttttaccaccctatagccttataggacgattctgatgttcgagccaacttttacacatttcaactaatttcacgaaatatttgtcatcttttatcatccctatcattatatcgtactatttattgatgaaaacctaattaaaaattctttgtcctggtgatagaatcatctttggatcaaatagatcttttctttgttgaaaaatattccattttttaccaaaatgtttgatccaatcctcttttgtcttgtaatgtggaagatattgctttatattgaggccaactttatcacaataatttaatatttcttcattttgattatccaaaattttgcattcattatatccacttgaagaatgtaaaagtcccacacaataaaatgtttcttcttctggtattattgctgacatcctatcatcccatcttttcctacttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5484" stop="6682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5784" g_stop="6382" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E317824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5784" e_stop="6382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</genome_strand>
        <mrna_strand>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314932" ref_strand="+" ref_description="SGN-E314932 [cTOA-31-O10]">
      <seq>tttgtttgtaccaaagtcttctatcatgcattttaatgctgctgtttttgtggacataatcctcagacaaaacaagacaaatggacccatacttgtctacccaacaagtaggaaaagatgggatgataggatgtcagcaataataccagaagaagaaacattttattgtgtgggacttttacattcttcaagtggatataatgaatgcaaaattttggataatcaaaatgaagaaatattaaattattgtgataaagttggcctcaatataaagcaatatcttccacattacaagacaaaagaggattggatcaaacattttggtanaaaatggaatatttttcaacaaagaaaagatctatttgatccaaagatgattctatcaccaggacaaagaatttttaattaggttttcatcaataaatagtacgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7638" stop="5676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7338" g_stop="7222" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6380" g_stop="5976" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="522" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E314932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7338" e_stop="7222"/>
          <exon e_start="6380" e_stop="5976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTAT</genome_strand>
        <mrna_strand>TTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTANAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349292" ref_strand="+" ref_description="SGN-E349292 [cTOS-2-N10]">
      <seq>agggatgtgggatgttccacatccatggctcaatttgtttgtacccaagtcatctatcctgcattttaatgctgctgtttttgtggacatcatcctcagacaaaacaagacaactggacccatacttgtctacccaacaagtcggaaaagatgggatgataggatgtcagccacgataccagaagaggaaacattttattgtgtgggatttttacattcttcaagtggatataacgaatgcaaaattttggatgatcaaaatgaagaaatattagattattgtgataaagttggcctcaacgtaaagcaatatcttccacattacaagacaaaagaggaatggatcaagcattttggtaaaaaatggaatatttttcaacaaagaaaagaactatttgatcccaagatgattctatcaccgggacaaagaatttttaattagcttcttttcaccaataaatggtaggatataagcatagggagtaaaagataggcatatatctcgtaaaatcagtcaagtagataaaaattgactcaaacatcagagtcattaaaaacaagcatgggtagaaaggggagggggtgtactagttgtattgagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7671" stop="5784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7371" g_stop="7222" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841">
            <donor d_prob="0.896" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6380" g_stop="5983" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="549" r_length="399" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E349292" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7371" e_stop="7222"/>
          <exon e_start="6380" e_stop="5983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAG---GTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGAT-GACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATC</genome_strand>
        <mrna_strand>AGGGATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCCAAGTCATCTATCCTGCATTTTAATGCTGCTGTTTTTGTGGACATCATCCTCAGACAAAACAAGACAACTGGACCCATACTTGTCTACCCAACAAGTCGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCCACGATACCAGAAGAGGAAACATTTTATTGTGTGGGATTTTTACATTCTTCAAGTGGATATAACGAATGCAAAATTTTGGATGATCAAAATGAAGAAATATTAGATTATTGTGATAAAGTTGGCCTCAACGTAAAGCAATATCTTCCACATTACAAGACAAAAGAGGAATGGATCAAGCATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGAACTATTTGATCCCAAGATGATTCTATCACCGGGACAAAGAATTTTTAATTAGCTTCTTTTCACCAATAAATGGTAGGATATAAGCATAGGGA-G-TAAAAGATAGGCATATATCTCGTAAAATCAG-TCAAGTAGATAAAAATTGACTCAAACATCAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391765" ref_strand="+" ref_description="SGN-E391765 [TUS-24-K2]">
      <seq>tttggtacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagtactatgatgaccaaaatgctaatactattgataaggagttgaagaagttggtaaaaggattgaagtatgtaggtggatttatgttcaagaaagatgtgagttttgtggaatttttgaatagagttagaagtggggaattagagttacaatcaaaaggaatgtgggatgttccacatccatggcccaatttgtttgtaccaaagtcttctatcatgcattttaatgctgctgtttttgtggacataatcctcagacaaaacaagacaaatggacccatacttgtctaccccaacagtaagaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="8676" stop="6920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8376" g_stop="8316" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7953" g_stop="7690" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="323" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7689" i_stop="7493" i_length="197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7492" g_stop="7222" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="594" r_length="271" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E391765" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8376" e_stop="8316"/>
          <exon e_start="7953" e_stop="7690"/>
          <exon e_start="7492" e_stop="7222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAGATTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAGGTATGTATTTCTCAAATTTACGTGATTCACTTTTTTATACTCATATATATATATATTCAGTCAAAGTGCATTATATGCGTTGATTTTGAAATTGTCAATGTATTTTAACATGTTATTTTACTAAAGAGGTTCAATATCTTTTATATATATATAAGATTGATTTTTATATATACGTTGTAATTTTTTAACGATTGTAGAGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG</genome_strand>
        <mrna_strand>TTTGGTACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA..........................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGAT-A-.....................................................................................................................................................................................................AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCCCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCCAACAGTAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310366" ref_strand="+" ref_description="SGN-E310366 [cTOA-1-M12]">
      <seq>tcaaataagtaacgttcatgagatggatgttattacaggtaaaggggaattaatgacttgctccaaagatatgaattcagaattgttttttggagttttaggaggtttgggacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagtactatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="9572" stop="7414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9272" g_stop="9235" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8443" g_stop="8316" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="166" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7953" g_stop="7714" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="406" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E310366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9272" e_stop="9235"/>
          <exon e_start="8443" e_stop="8316"/>
          <exon e_start="7953" e_stop="7714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAATATATTTTTTGGTGATGCATGCTAATATATGATAATACAATTAAATTTATGATTTTTTTATTTAATTATTATTGAATATATGATAATACAATTAAATTTATGATTTTTTTTATTTAATTATTATTGTTTTTGTTGTTGTTGACTCATGTTTGGTTTCATCAGGTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAGATTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGAC</genome_strand>
        <mrna_strand>TCAAATAAGTAACGTTCATGAGATGGATGTTATTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA..........................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246753" ref_strand="+" ref_description="SGN-E246753 [cLEF-45-B14]">
      <seq>ttggtacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagttctataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="8675" stop="7418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8375" g_stop="8316" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7953" g_stop="7716" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="298" r_length="238" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E246753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8375" e_stop="8316"/>
          <exon e_start="7953" e_stop="7716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAGATTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATG</genome_strand>
        <mrna_strand>TTGGTACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA..........................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTTCTATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555300" ref_strand="+" ref_description="SGN-E555300 [cTSC-1-D9]">
      <seq>ttaattctttcttctattatggctaagttttttttatcctatggttataatattattattttctttattattactcatttaatgtccattttaggaaagttaaaaccatggaatccttcaattccttatgaaattctttcacttaatatttcatcaaaacttagtacaaattctcatgctattaaagaatcttccaaagattttggaaaaattattcaagaaatattaccagctgctgttctttatccttcttgtgttaatgacataattgacctcatacaattttcttatgacctttctgtcccttttcatgtagcagccaaaggtcatggacattccattaggggacaagccatggcaaaaaatggggtaattgtggaaatgagttctttaaataataataataatgagaattgtggtgttagggtttcttgggattcggatttagggttttacgcggatgttggaggtgaacaattatggattgatgttcttcataacaccctagagtatggcttagcacctgtttcatggacagattatttgtaccttaccgttggtggtacactctctaatgctggaattagtggtcaaacttttcgatatggtcctcaaataagtaacgttcatgagatggatgttattacaggtaaaggggaatttatgacttgctccaaagatatgaattcagaattgttttttggagttttaggaggtttgggacagtttggaaatataacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10183" stop="8051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9883" g_stop="9235" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8443" g_stop="8351" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="742" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E555300" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9883" e_stop="9235"/>
          <exon e_start="8443" e_stop="8351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAATATATTTTTTGGTGATGCATGCTAATATATGATAATACAATTAAATTTATGATTTTTTTATTTAATTATTATTGAATATATGATAATACAATTAAATTTATGATTTTTTTTATTTAATTATTATTGTTTTTGTTGTTGTTGACTCATGTTTGGTTTCATCAGGTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAA</genome_strand>
        <mrna_strand>TTAATTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGGGAATTTATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAAATATAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338374" ref_strand="+" ref_description="SGN-E338374 [cTOE-15-A1]">
      <seq>ctacttctaatcattttcttttttcttccttcttatggctaagttttttatatcctatggttataatcttattattttctttattattagtcatttaatgtccattttaggaaatttaaatccatggaatccttcaattccttttgaaattctttcacttaatatttcatcaaaacttagtataaattctcatgctattaaagaatcttccaaagattttggaaagatcattcaagaaatattatcagctgctcttctttatccttcttgtgttaatgacataattgacctcattcaattttcttatggcctttctatcccttttcatattgcagccaaaggtcatggacattccattaggggacaagccatggcaaaaaatggggtaattgtggaaatgaatactttaaataataataataataatcataataataataataataataataataatgaaaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10190" stop="8311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="9476" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9475" i_stop="8638" i_length="838">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8637" g_stop="8596" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="466" r_length="42" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E338374" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="9476"/>
          <exon e_start="8637" e_stop="8596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAATATATTTTTT</genome_strand>
        <mrna_strand>CTACTTCTAATCA-TT--TTCTTT-TTTCTTCCTTC--TTATGGCTAAGTTTTTTATATCCTATGGTTATAATCTTATTATTTTCTTTATTATTAGTCATTTAATGTCCATTTTAGGAAATTTAAATCCATGGAATCCTTCAATTCCTTTTGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTATAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAGATCATTCAAGAAATATTATCAGCTGCTCTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATTCAATTTTCTTATGGCCTTTCTATCCCTTTTCATATTGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAATACTTTAAATAATAATAATAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATAATAATAATAATAATAATAATAATAATGAAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335434" ref_strand="+" ref_description="SGN-E335434 [cTOE-2-D22]">
      <seq>ttatatcctatggttataatcttattattttctttattattagtcatttaatgtccattttaggaaatttaaatccatggaatccttcaattccttttgaaattctttcacttaatatttcatcaaaacttagtataaattctcatgctattaaagaatcttccaaagattttggaaagatcattcaagaaatattatcagctgctcttctttatccttcttgtgttaatgacataattgacctcattcaattttcttatggcctttctatcccttttcatattgcagccaaaggtcatggacattccattaggggacaagccatggcaaaaaatggggtaattgtggaaatgaatactttaaataataataataataataataataataataataataataataataatgaaaattatggtgttagggtttcttgggattcgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10152" stop="8280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9852" g_stop="9478" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9477" i_stop="8637" i_length="841">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8636" g_stop="8605" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="407" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E335434" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9852" e_stop="9478"/>
          <exon e_start="8636" e_stop="8605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAAT</genome_strand>
        <mrna_strand>TTATATCCTATGGTTATAATCTTATTATTTTCTTTATTATTAGTCATTTAATGTCCATTTTAGGAAATTTAAATCCATGGAATCCTTCAATTCCTTTTGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTATAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAGATCATTCAAGAAATATTATCAGCTGCTCTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATTCAATTTTCTTATGGCCTTTCTATCCCTTTTCATATTGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAATACTTTAAATAATAATAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAATAATAATAATAATAATAATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336826" ref_strand="+" ref_description="SGN-E336826 [cTOE-5-B24]">
      <seq>actcatttaatgtccattttacgaaagttaaaaccatggaatccttcaattccttatgaaattctttcacttaatatttcatcaaaacttagtacaaattctcatgctattaaagaatcttccaaagattttggaaaaattattcaagaaatattaccagctgctgctctttatccttcttgtgttaatgacataattgacctcatacaattttcttatgacctttctgtcccttttcatgtagcagccaaaggtcatggacattccattaagggacaagccatggcaaaaaatggggtaattgtggaaatgagttctttaaataataataataatgagaattgtggtgttagggtttcttgggattcggatttagggttttacgcggatgttggaggtgaacaattatggattgatgttcttgataacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10111" stop="9078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9811" g_stop="9378" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E336826" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9811" e_stop="9378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCT</genome_strand>
        <mrna_strand>ACTCATTTAATGTCCATTTTACGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGCTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAAGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTGATAACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313020" ref_strand="+" ref_description="SGN-E313020 [cTOA-14-C21]">
      <seq>ctacttctaataatttccttttttttttctttcttctattatggctaagttttttttatcctatggttataatattattattttctttattattactcatttaatgtccattttaggaaagttaaaaccatggaatccttcaattccttatgaaattctttcacttaatatttcatcaaaacttagtacaaattctcatgctattaaagaatcttccaaagattttggaaaaattattcaagaaatattaccagctgctgttctttatccttcttgtgttaatgacataattgacctcatacaattttcttatgacctttctgtcccttttcatgtagcagccaaaggtcatggacattccattaggggacaagccatggcaaaaaatggggtaattgtggaaatgagttctttaaataataataataatgagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10205" stop="9169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="9469" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E313020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="9469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATT</genome_strand>
        <mrna_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336000" ref_strand="+" ref_description="SGN-E336000 [cTOE-6-N21]">
      <seq>ctacttctaataatttccttttttttttctttcttctattatggctaagttttttttatcctatggttataatattattattttctttattattactcatttaatgtccattttaggaaagttaaaaccatggaatccttcaattccttatgaaattctttcacttaatatttcatcaaaacttagtacaaattctcatgctattaaagaatcttccaaagattttggaaaaattattcaagaaatattaccagctgctgttctttatccttcttgtgttaatgacataattgacctcatacaattttcttatgacctttctgtcccttttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10205" stop="9271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="9571" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E336000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="9571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATG</genome_strand>
        <mrna_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464016" ref_strand="+" ref_description="SGN-E464016 [cPRO-16-P17]">
      <seq>aagatactccaagggaaacaaacgtcgccgttttacgagactattcgtcttcaagtttcagcaaatttctcagagcaacaaaccgaagtttttttttccttctgtaatggcggagaagctccaagcagttgaggttctatattgtggagtttgcgggttacccgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccagaccttgttaaagattctaatttgaaagaagctgataaagtctctgatcagctccagtcggcttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagataaaaaagaaagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23702" stop="27006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24002" g_stop="24267" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="317" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="379" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E464016" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24002" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA</genome_strand>
        <mrna_strand>AAGATACTCCAA-GGGAAACAAACGTCGCCGTTTTACGAGACTATTCGTCTTCAAGTTTCAGCAAATTTCTCAGAGCAACAAACCGAAGTTTTTT-TTTCCT-TC------TG---TAATGGCGGAGAAGCTCCAAGCAGTTGAGGTTCTATATTGTGGAGTTTGCGGGTTACCCGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCAGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAAGTCTCTGATCAGCTCCAGTCGGCTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393430" ref_strand="+" ref_description="SGN-E393430 [TUS-39-A4]">
      <seq>atcctttaaggggaacaagacgtcgtcgttttacgagacgattcgtcttcgagtttcagcgaatttatcggagcaacgaatcggagttttttcttttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtctttgtttatctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaataatttaagcgccttcctggtggaaagattatgaagaaagagaaacaggagatgattattgaaaaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23705" stop="27010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24005" g_stop="24267" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="388" r_length="62" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E393430" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24005" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA</genome_strand>
        <mrna_strand>ATCCTTTAAGGGGAACAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCGAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCTTTGTTTATCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAATAATTTAAGCGCCTTCCTGGTGGAAAGATTATGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689205" ref_strand="+" ref_description="SGN-E689205 [t3_tus_80_J01]">
      <seq>ccttttacgtcgtcgttttacgagacgattcgtcttcaagttttagcgaatttatcggagcaacgaatcggagttttttcttttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcggctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggtttaaggcccgactgaaaaggagcagatcgatgttcaaggggacatatccctatgacattggtggacttcattacagaaacctggccagatgttccaaaatccgcaatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23724" stop="28864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24024" g_stop="24267" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="250" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="313" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="375" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="457" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="525" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="611" r_length="86" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28659" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="633" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E689205" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24024" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATAT-CCTATGACATT-GTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCT</genome_strand>
        <mrna_strand>ACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTTAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCGGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTTAA.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCCTATGACATTGGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAAAATCCGCAATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425726" ref_strand="+" ref_description="SGN-E425726 [STM-45-B15]">
      <seq>cgccgttttacgagacgattcgtcttcaagtttcagcaaatttctcagagcaacgaaccgaagttttttttttcttctgtaatggcggagaagctccaagcagttgaggttctatattgtggagtttgcgggttacccgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccagaccttgttaaagattctaatttgaaagaagctgataaagtctctgatcagctccagtcggcttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagataaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgtaaaactaagtgatgcttcaaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccaactgaaaaggagcagattgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagaatctgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactatggagatgacatccctgttcccagcagggtgtttccccaaacaatgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23728" stop="29049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24028" g_stop="24267" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="354" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="436" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="504" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="588" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28749" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="700" r_length="112" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E425726" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24028" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGT</genome_strand>
        <mrna_strand>CGCCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCAAATTTCTCAGAGCAACGAACCGAAGTTTTTT-TTTTC---------TT-CTGTAATGGCGGAGAAGCTCCAAGCAGTTGAGGTTCTATATTGTGGAGTTTGCGGGTTACCCGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCAGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAAGTCTCTGATCAGCTCCAGTCGGCTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATAAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTAAAACTAAGTGATGCTTCAAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCAACTGAAAAGGAGCAGATTGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAATCTGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTATGGAGATGACATCCCTGTTCCCAGCAGGGTGTTTCCCCAAACAATGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455246" ref_strand="+" ref_description="SGN-E455246 [cSTS-25-D2]">
      <seq>cgccgttttacgagacgattcgtcttcaagtttcagcaaatttctcagagcaacgaaccgaagttttttttttcttctgtaatggcggagaagctccaagcagttgaggttctatattgtggagtttgcgggttacccgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccagaccttgttaaagattctaatttgaaagaagctgataaagtctctgatcagctccagtcggcttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagataaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgtaaaactaagtgatgcttcaaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccaactgaaaaggagcagattgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagaatctgcaatattcttcatagaagacggaaaaaagggtccagctgcataaactatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23728" stop="29003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24028" g_stop="24267" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="354" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="436" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="504" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="588" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28703" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="654" r_length="66" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E455246" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24028" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAG</genome_strand>
        <mrna_strand>CGCCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCAAATTTCTCAGAGCAACGAACCGAAGTTTTTT-TTTTC---------TT-CTGTAATGGCGGAGAAGCTCCAAGCAGTTGAGGTTCTATATTGTGGAGTTTGCGGGTTACCCGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCAGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAAGTCTCTGATCAGCTCCAGTCGGCTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATAAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTAAAACTAAGTGATGCTTCAAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCAACTGAAAAGGAGCAGATTGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAATCTGCAATATTCTTCATAGAAGACGGAAAAAAGGGTCCAGCTGCATAAACTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345238" ref_strand="+" ref_description="SGN-E345238 [cTOF-13-I14]">
      <seq>ttttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23798" stop="29104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24098" g_stop="24267" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="233" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="295" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="377" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="445" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="529" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28804" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="696" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E345238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24098" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTG</genome_strand>
        <mrna_strand>TTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700435" ref_strand="+" ref_description="SGN-E700435 [FA13AE01]">
      <seq>tttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtggctactatggttccaccctctatatagcaaataatataaaaaagcaaagaaacacgtcgtatcacataatgtcgtccattcttggtgaaggttcatgtaatcaatcgatcagacttgcttgagatagaggcgtagttgtgtttttggcattttgagcacatccaatcaccaatgctttttgatgtgaagtcaattttggtgaacccaaaaaattacatttgtaaccccacttagtttatgtttcccatgcctaaataaaatttttattaacatcctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23799" stop="29382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24099" g_stop="24267" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="232" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="294" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="376" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="444" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="528" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="29089" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="980" r_length="452" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E700435" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>980</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24099" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="29089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAA-TTTTATTAACATTCCTAAGTGTGAA</genome_strand>
        <mrna_strand>TTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGCTTTTTGATGTGAAGTCAATTTTGGTGAACCCAAAAAATTACATTTGTAACCCCACTTAGTTTATGTTTCCCATGCCTAAATAAAATTTTTATTAACA-TCCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602269" ref_strand="+" ref_description="SGN-E602269 [55409]">
      <seq>ctgtaatggcggagaagctccaagcagttgaggttctatattgtggagtttgcgggttacccgctgagtattgtgaattcggatccgaattgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccagaccttgttaaagattctaatttgaaagaagctgataaagtctctgatcagctccagtcggcttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagataaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgtaaaactaagtgatgcttcaaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccaactgaaaaggagcagattgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagaatctgcaatattcttcatagaagacggagaaaaaggttccagctgcataaactatggagatgacatccctgttcccagcagggtgtttcccaaacaaatgctcgtagcactgtgttggttgaaatttggggtgagaatatgtatcggctctatagatgtggctactatcggttctaccctctctatagcaaatagtatagcaaagcaaagaaaacacgtctgcattttgccaattagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23815" stop="29166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24115" g_stop="24267" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="215" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="277" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="359" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="427" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28862" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="739" r_length="228" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E602269" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24115" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGA-AAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTAT-GGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAG-AAACACGTC</genome_strand>
        <mrna_strand>CTGTAATGGCGGAGAAGCTCCAAGCAGTTGAGGTTCTATATTGTGGAGTTTGCGGGTTACCCGCTGAGTATTGTGAATTCGGATCCGAA-TTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCAGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAAGTCTCTGATCAGCTCCAGTCGGCTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATAAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTAAAACTAAGTGATGCTTCAAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCAACTGAAAAGGAGCAGATTGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAATCTGCAATATTCTTCATAGAAGACGGAGAAAAAGGTTCCAGCTGCATAAACTATGGAGATGACATCCCTGTTCCCAGCAGGGTGTTTCCCAAACAAATGCTCGTAGCACTGTGTTGGTTGAAATTTGGGGTGAGAATATGTATCGGCTCTATAGATGTGGCTACTATCGGTTCTACCCTCTCTATAGCAAATAGTATAGCAAAGCAAAGAAAACACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537739" ref_strand="+" ref_description="SGN-E537739 [TUS-56-H23]">
      <seq>gttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtggctactatggttccaccctctatatagcaaataatataaaaaagcaaagaaacacgtcgtatcacataatgtcgtccattcttggtgaaagttcatgtaatcaatcgatcagacttgcttgagatagaggcgtagttgtgtttttggcattttgagcacatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23847" stop="29270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24147" g_stop="24267" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="184" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="246" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="328" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="396" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="480" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28965" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="808" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E537739" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24147" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACAT</genome_strand>
        <mrna_strand>GTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAAGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266989" ref_strand="+" ref_description="SGN-E266989 [cLEI-7-H4]">
      <seq>ttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagctcggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttgcagctgcataaactacggagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23848" stop="29008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24148" g_stop="24267" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="183" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="327" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="395" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="479" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="28708" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="550" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E266989" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24148" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="28708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGAC</genome_strand>
        <mrna_strand>TTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTCGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTGCAGCTGCATAAACTACGGAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272689" ref_strand="+" ref_description="SGN-E272689 [cLEM-21-O3]">
      <seq>cgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagtaagaaatttccagcatttgtcgttttgtctaatgtatattaatccttctttcaaaatggcatggctctgtgccatccatgtgatattataagctctaagaaaatttgataagtgaagttcttgtaatcctcccattgtattcatgtactaaaacttttcattattgttccctgtaagccatcatcttaagattttaatttgaccaacatattatgaatcaggatcattctaattgaaaagtttctctcttttgctttgagatattaagttacaaatcttggttatatcatttatattcaaatattggatggatactattcacctagttgaactaacttgaagctgttatattttgtatgggttttccctgcaatgtgaatatgcaagcgtcctaagtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23900" stop="27405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24200" g_stop="24267" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="131" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="27105" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="596" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E272689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24200" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="27105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</genome_strand>
        <mrna_strand>CGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537737" ref_strand="+" ref_description="SGN-E537737 [TUS-56-H23](-)">
      <seq>aaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtggctactatggttccaccctctatatagcaaataatataaaaaagcaaagaaacacgtcgtatcacataatgtcgtccattcttggtgaaggttcatgtaatcaatcgatcagacttgcttgagatagaggcgtagttgtgtttttggcattttgagcacatccaatcaccaatggcttttgatgtgaagtcaattttgttgaaccaaaaaaattacatttgtaaccccacctagtttatgtttcacatgcctaattaaaattttattaacattcctaagtgtgaatttacattctaaaatttcccaagtttcaattatatacaccatcaatgcantaataaaactttttactcattccttcaataaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="27879" stop="29469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28179" g_stop="28238" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="128" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="212" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28638" g_stop="29168" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="744" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E537737" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28179" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="29168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCA-TAATAAAACTTTTTACTCATTCCTTCAATA</genome_strand>
        <mrna_strand>AAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCANTAATAAAACTTTTTACTCATTCCTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286520" ref_strand="+" ref_description="SGN-E286520 [cLES-12-H1]">
      <seq>gaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtggctactatggttccaccctctatatagcaaataatataaaaaagcaaagaaacacgtcgtatcacataatgtcgtccattcttggtgaaggttcatgtaatcaatcgatcatacttgcttgagatagaggcgtagttgtgtttttggcattttgagcacatccaatcaccaatggcttttgatgtgaagtcaattttgttgaaccaaaaaaattacatttgtnaaaaaaaaaagaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28365" stop="74500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28665" g_stop="29026" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29027" i_stop="29500" i_length="474">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29501" g_stop="29531" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="393" r_length="31" r_score="0.677"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E286520" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28665" e_stop="29026"/>
          <exon e_start="29501" e_stop="29531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCATAATAAAACTTTTTACTCATTCCTTCAATAATTCCTTGAGATTAATGACAATCTTCATAATGAGATTACCTTGATAAAGCTAATAATTGAAGTATTAAATCAATGATAATTTTGATCTTAAACCAAGCATGAGTGCACATATAGCATGATTATTATGGCTACATTGTCAACCTATTTATAGCATGATGATGATTGATTAATTAGCCTCATAATTGTAATGTTGTATATACTTCGTTCGTCTCAAAATAAGGGTCATCTTAGAAATTCAAGGCCAAAAATTAGAGTATATTTTTCTTAATTATCTATAAAAATTTGTAACCTAAAATAAATATTCGATATTGTAAGACTACGATTCATTTCAGTAAAAGTAAATTTAAAAAAAAAAATTAAAAT</genome_strand>
        <mrna_strand>GAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCATACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAGAAAAAAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211338" ref_strand="+" ref_description="SGN-E211338 [cLEC-70-F22]">
      <seq>tcatttgaagaaaaaaaagggttgggattttattttctcatctttacaactttttgtgatatttgaggttataaggcttttttagtatcttgctaaaaagaacttgggagatgactgttcgatcgaatagctttaaaggaacacatttggaaactattatacaatcgaataatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29891" stop="32953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30191" g_stop="30257" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30258" i_stop="31293" i_length="1036">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31294" g_stop="31692" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="466" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32287" g_stop="32467" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="647" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32567" g_stop="32653" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="734" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E211338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30191" e_stop="30257"/>
          <exon e_start="31294" e_stop="31692"/>
          <exon e_start="32287" e_stop="32467"/>
          <exon e_start="32567" e_stop="32653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAGGTAATTTAATTTTTTTCCAATCTTTGATGTTGTTTTAAGACGTGGTGTTTTGTTTCTTTTTGTTTTTTGTTGTTCGAGTTTTAAGGTTCTTAGCATTGAATATATGGTATACGTATGTTTCGTGTTAAAAAGATTTGAGTTTTTGCTACGTTTCGATGGGCTTTAGTTTAATCTTTTGTAAGTTTTTGACCAAAAGTTTGATAATTTAGCTTAAGTGAAATTTTAATGTTTTTCACATATATATCTATGTTTCGTATCGAAAATACTAGTTATGCATCCGCCTCAGTATCTACTGAGCTTTAGAGGCCGATGTAAGTTTTCGATACGAGAGTATAAATATATAAGTAAAAAAATCTACTAAAATTTCAAAAAGATGTTGGATATGGGAACATAGTTTTAATTGTACTATGAATCTTAAAAGATTCGAATATATTTAGTTTAAATCCTGAACATGTCTCTAATAATAAGGTTTAGTTCAATTTTGTAATCAAGGTTACCTTTTTTTTAAAATCAAAAGTTTGATAATTTAGCTCAAGAACTTGAAATAATTGAAGTTTTTTTTTAATTCTAAAGTGGTGTTAGGAAGAGAAAAATATGTAGATGGATGAATTGATGATTTAGTTATATTTGCTAGTAATATTTTTTCTTTTTAGTTTATTCTTTGATCTTGAATCGAGGTTTTTTGGAAACAGTTTCTCTATCTCGAGGAGATAGGGTAAGGTTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTCTTTCTTTGACCTTGAATCGATGGTTTTTTGAAAACAGTCTCTCTATTTCCACGAGGTAGAGGTAAAACTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTGTAGTTCTTTCTTTGATCTTGAATCGAGGATCTTTTGGAAACAGTCTCTCTATCTCCATGAGGTAGGGGTAAGATCTGTGTACACTCTCGAGATGTGTTTGTTGTTGTTGTTGTTTGTTTGTTTGGCTTAATGGAATTATCCAACAAATTTGCAGGTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTAC</genome_strand>
        <mrna_strand>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395382" ref_strand="+" ref_description="SGN-E395382 [TUS-16-L15]">
      <seq>taatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctactggttggatgttggagacgggaaagagataaatctcgagaagtgtcctaggttcaatctgcagcatcaatgcatncagtatctaggacctaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31096" stop="33291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31396" g_stop="31692" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32287" g_stop="32467" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="478" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32567" g_stop="32655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="567" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32748" g_stop="32835" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="655" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32941" g_stop="32991" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="706" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E395382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31396" e_stop="31692"/>
          <exon e_start="32287" e_stop="32467"/>
          <exon e_start="32567" e_stop="32655"/>
          <exon e_start="32748" e_stop="32835"/>
          <exon e_start="32941" e_stop="32991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTAT</genome_strand>
        <mrna_strand>TAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATNCAGTATCTAGGACCT.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206331" ref_strand="+" ref_description="SGN-E206331 [cLEC-23-K22]">
      <seq>aatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31097" stop="32903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31397" g_stop="31692" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32287" g_stop="32467" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="477" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32567" g_stop="32603" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="514" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E206331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31397" e_stop="31692"/>
          <exon e_start="32287" e_stop="32467"/>
          <exon e_start="32567" e_stop="32603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACT</genome_strand>
        <mrna_strand>AATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395486" ref_strand="+" ref_description="SGN-E395486 [TUS-16-L15](-)">
      <seq>tcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctactggttggatgttggagacgggaaagagataaatctcgagaagtgtcctaggttcaatctgcagcatcaatgcatcaagtatctaggacctaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctataaacaaaacggtgtctttgtggagacagtagagggttcaaaatggatctttgttcttagcacaacaagaacattgtacgtaggaaaaaagaagaaaggtgtgtttgaacactcgagtttcctatcgggtggtgcaactactgctgctggtagactcgttgctcatggtggcgttttgaaggctatttggccatacagcggacactatcaccccacggaagagaacttccgggaattcattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31321" stop="33535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31621" g_stop="31692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32287" g_stop="32467" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="253" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32567" g_stop="32655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="342" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32748" g_stop="32835" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="430" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32941" g_stop="33236" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="726" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E395486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31621" e_stop="31692"/>
          <exon e_start="32287" e_stop="32467"/>
          <exon e_start="32567" e_stop="32655"/>
          <exon e_start="32748" e_stop="32835"/>
          <exon e_start="32941" e_stop="33236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</genome_strand>
        <mrna_strand>TCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTGAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445702" ref_strand="+" ref_description="SGN-E445702 [cSTA-18-A20]">
      <seq>tttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaggctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcggaagtgaaagctctcaacctttcttctactggttggatgttggagacggaaaagaaataaatctcgagaagtgtcctaggaccactctgcagcatcaatgcatcaagtatcttggaccgaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctataaacaaaacggtgtctttgtggagacagtagaaggttcaaaatggatctttgttcttagcacaacaagaacattgtatgtangaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="32028" stop="33379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32328" g_stop="32467" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32567" g_stop="32655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="229" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32748" g_stop="32835" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="317" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105">
            <donor d_prob="0.785" d_score="0.90"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32941" g_stop="33079" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="456" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E445702" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32328" e_stop="32467"/>
          <exon e_start="32567" e_stop="32655"/>
          <exon e_start="32748" e_stop="32835"/>
          <exon e_start="32941" e_stop="33079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAA</genome_strand>
        <mrna_strand>TTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAGGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGGAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGAAAAGAAATAAATCTCGAGAAGTGTCCTAGGACCACTCTGCAGCATCAATGCATCAAGTATCTTGGACCG.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAAGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTATGTANGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433873" ref_strand="+" ref_description="SGN-E433873 [STM-59-I23]">
      <seq>ctattcaatatttagtgataaagagctatcaatttctccttcaattcattgatgctaaaaaaaatatgaaaaaaattgtacaaatgttaatcaaagccatccttcaaaactttgataaaagatgattaattaggctaaatgaagccatcttgtacaaataaatcaaacatgaatgaacgaataaataacgattttagttagtttgttgcatctacttctccgtctgtagtcagtcatgatactataaacgaacaaatgaatgtgactcgtggtcctgatcgagctaaagagatgggtcggatactgaaacctgctttcgaggcatcatcagctggtgcaaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34456" stop="33526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34147" g_stop="33815" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="345" r_length="327" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E433873" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34147" e_stop="33815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGCTATC-ATTTCAACTTCAATTCATTGATGCT-AA-AAAATATGAAAAAAATTGTACAAAAATGTTAATCAAAGCCATCATTGAAAACTTTGATAAAAGATGATTAATTAGGCTAAATGAAGCCATCTTGTACAAATAAATCAAACATGAATGAACGAATAAATAACGATTTTAGTTAGTTTGTTGCATCTACTTCTCCATCTTTAGTCAGAGGTCAGGATACTATAAACGAACAAGTGAACATGACTCGTGGTCCTGATCAAGCAAAAGAAATGGGTCGGATACTAAAACCTGTTTTCGAGACATCCATCATCAGCTGGTGCAAATGTA</genome_strand>
        <mrna_strand>TAAAGAGCTATCAATTTCTCCTTCAATTCATTGATGCTAAAAAAAATATGAAAAAAATTGTAC--AAATGTTAATCAAAGCCATCCTTCAAAACTTTGATAAAAGATGATTAATTAGGCTAAATGAAGCCATCTTGTACAAATAAATCAAACATGAATGAACGAATAAATAACGATTTTAGTTAGTTTGTTGCATCTACTTCTCCGTCTGTAGTC--A-GTCATGATACTATAAACGAACAAATGAATGTGACTCGTGGTCCTGATCGAGCTAAAGAGATGGGTCGGATACTGAAACCTGCTTTCGAG----GCATCATCAGCTGGTGCAAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693950" ref_strand="+" ref_description="SGN-E693950 [LH_Ea02K12](-)">
      <seq>ttcccatgcttaaggaatggcatccctaagggagttgcaatggtgatctctttctttatatcggctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgttttttctgcattgttggtcaaccaatgggtgtgcttctgtattcccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtttatcattttgttggcccgcgcctcacgagggagtattgcagtcttgaactatctgatgttttacttatatgcttgaaataaagaaaattcttttttaaaatttgcccccaaggaactgacccgaatcgttgctttgtattatatctttcttttgatatttaagaaatgtatattattttttgtttgggtaaaatgtaataagctcaaattagatatagtgtcctaatttcgaattttccctatttactatttcccatgcattattgttatatccattaggccatttgttgcccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37155" stop="35599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="78" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36673" g_stop="36611" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="141" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36440" g_stop="36387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="195" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36293" g_stop="35899" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="590" r_length="395" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="619"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E693950" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36611"/>
          <exon e_start="36440" e_stop="36387"/>
          <exon e_start="36293" e_stop="35899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</genome_strand>
        <mrna_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCGGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGTTTTTTCTGCATTGTTGGTCAACCAATGGGTGTGCTTCTGTATTCCCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTTTATCATTTTGTTGGCCCGCGCCTCACGAGGGAGTATTGCAGTCTTGAACTATCTGATGTTTTACTTATATGCTTGAAATAAAGAAAATTCTTTTTTAAAATTTGCCCCCAAGGAACTGACCCGAATCGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATTATTTTTTGTTTGGGTAAAATGTAATAAGCTCAAATTAGATATAGTGTCCTAATTTCGAATTTTCCCTATTTACTATTTCCCATGCATTATTGTTATATCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379436" ref_strand="+" ref_description="SGN-E379436 [TUS-3-I16](-)">
      <seq>ctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtggacaacatgacattctggtgctttttctgcattgttggtcaaccaatgtgtgtgcttctgtattaccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtcgatcattttgttggaccgcgactcactagtgagtatcgcagttttgaactatctgatgctttacttatatgcttgaaatggagaaaattcttttctaaaatttgacaccaaggagagtgaacagaattgttgctttgtattatatctttcttttgatatttaagaaatgtatatcgatttttgttgaggtaaaatgtcataagctcaaattagtgatagtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39317" stop="35654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39017" g_stop="38982" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38285" g_stop="38204" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38081" g_stop="38061" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="139" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37892" g_stop="37830" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36673" g_stop="36611" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="313" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36440" g_stop="36387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="367" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36293" g_stop="35954" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="708" r_length="341" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E379436" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39017" e_stop="38982"/>
          <exon e_start="38285" e_stop="38204"/>
          <exon e_start="38081" e_stop="38061"/>
          <exon e_start="37892" e_stop="37830"/>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36611"/>
          <exon e_start="36440" e_stop="36387"/>
          <exon e_start="36293" e_stop="35954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGA-ATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTC</genome_strand>
        <mrna_strand>CTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG..........................................................................................................................TATTGGAGACTTTGGAATATG........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGACAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAGAGTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCGATTTTTGTTGAGGTAAAATGTCATAAGCTCAAATTAGTGATAGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210999" ref_strand="+" ref_description="SGN-E210999 [cLEC-69-N10]">
      <seq>gtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagcttagctatcctcgctctgcatccattcggaagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgctttttctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="40387" stop="35958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40273" g_stop="40265" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39996" i_stop="39304" i_length="693">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39303" g_stop="39202" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39118" g_stop="38982" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="335" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38285" g_stop="38204" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38081" g_stop="38061" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="438" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37892" g_stop="37830" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="549" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36673" g_stop="36611" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="612" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36440" g_stop="36387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="666" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36293" g_stop="36258" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="702" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E210999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40273" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39303" e_stop="39202"/>
          <exon e_start="39118" e_stop="38982"/>
          <exon e_start="38285" e_stop="38204"/>
          <exon e_start="38081" e_stop="38061"/>
          <exon e_start="37892" e_stop="37830"/>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36611"/>
          <exon e_start="36440" e_stop="36387"/>
          <exon e_start="36293" e_stop="36258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATT</genome_strand>
        <mrna_strand>GTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG..........................................................................................................................TATTGGAGACTTTGGAATATG........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211067" ref_strand="+" ref_description="SGN-E211067 [cLEC-69-M10]">
      <seq>gtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagcttagctatcctcgctctgcatccattcggaagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgatttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="40387" stop="36322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40273" g_stop="40265" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39996" i_stop="39304" i_length="693">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39303" g_stop="39202" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39118" g_stop="38982" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="335" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38285" g_stop="38204" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38081" g_stop="38061" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="438" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37892" g_stop="37830" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="549" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36673" g_stop="36622" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="601" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E211067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40273" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39303" e_stop="39202"/>
          <exon e_start="39118" e_stop="38982"/>
          <exon e_start="38285" e_stop="38204"/>
          <exon e_start="38081" e_stop="38061"/>
          <exon e_start="37892" e_stop="37830"/>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAA</genome_strand>
        <mrna_strand>GTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG..........................................................................................................................TATTGGAGACTTTGGAATATG........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGATTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380039" ref_strand="+" ref_description="SGN-E380039 [TUS-3-I16]">
      <seq>cacttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatcgggtgtcacactgatgatgtttgcttgcattgtgtggatgaaactagtttcttatgcacatacaaattatgatatgagacagcttgcaaagtctgtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctantaagattggtggnaacgcaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41829" stop="37563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41613" g_stop="41598" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41440" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="92" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41228" g_stop="41161" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="160" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40388" g_stop="40265" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="284" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="371" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39996" i_stop="39271" i_length="726">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39270" g_stop="39202" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="440" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39118" g_stop="38982" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="577" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38285" g_stop="38204" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="659" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38081" g_stop="38061" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="680" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="37892" g_stop="37863" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="710" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E380039" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41613" e_stop="41598"/>
          <exon e_start="41515" e_stop="41440"/>
          <exon e_start="41228" e_stop="41161"/>
          <exon e_start="40388" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39270" e_stop="39202"/>
          <exon e_start="39118" e_stop="38982"/>
          <exon e_start="38285" e_stop="38204"/>
          <exon e_start="38081" e_stop="38061"/>
          <exon e_start="37892" e_stop="37863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGG-AACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATC</genome_strand>
        <mrna_strand>CACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTANTAAGATTGGTGGNAACGC-AAAACAATTGATGAG..........................................................................................................................TATTGGAGACTTTGGAATATG........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207478" ref_strand="+" ref_description="SGN-E207478 [cLEC-36-M23]">
      <seq>cacttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatcgggtgtcacactgatgatgtttgcttgcattgtgtggatgaaactagtttcttatgcacatacaaattatgatatgagacagcttgcaaagtctgtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41829" stop="38704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41613" g_stop="41598" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41440" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="92" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41228" g_stop="41161" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="160" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40388" g_stop="40265" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="284" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="371" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39996" i_stop="39271" i_length="726">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39270" g_stop="39202" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="440" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39118" g_stop="39004" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="555" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E207478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41613" e_stop="41598"/>
          <exon e_start="41515" e_stop="41440"/>
          <exon e_start="41228" e_stop="41161"/>
          <exon e_start="40388" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39270" e_stop="39202"/>
          <exon e_start="39118" e_stop="39004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGT</genome_strand>
        <mrna_strand>CACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690110" ref_strand="+" ref_description="SGN-E690110 [LH_Ea02K12]">
      <seq>gtcatgctggcttactcgatctctgtatagtggtgcttattgcatttaaacagcaggctgattattgagaatttgatgaatagggttcttggtgttcatgttgcactggcaatattttgactactattgcagaatggcttgttaattgggtctggcttctggagtatttcaacatcattaagagattggcctcttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtccagaaaatggcacggacgaagtatatgactgaacatgtagttgtcacttttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatccggagtcacactgatgatgtttgcttgcattgtgaggatgaaactaggttcttatgcacatacaaattaggatatgagacagcttgtccaggctgtgattgagggtgagaattccgaaatcaactactcttacaatgttagtttcaagagtttggcttacttcatggttgctccatctttatgcctatcagcttagctatcctcgctctgcatccattcggaagggatggctggcccgccaactcatcaatctggaaatttttacaggattaatgggatttatccttgaccactatattaacccgattgtgctaagctcacaacatacatttcaaggatatcttttatccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42810" stop="38757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42510" g_stop="42431" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42430" i_stop="41723" i_length="708">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41722" g_stop="41598" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="206" r_length="125" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41440" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="282" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41228" g_stop="41161" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="350" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40388" g_stop="40265" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="474" r_length="124" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.761" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="562" r_length="88" r_score="0.954"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39996" i_stop="39304" i_length="693">
            <donor d_prob="0.883" d_score="0.92"/>
            <acceptor a_prob="0.803" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39303" g_stop="39202" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="664" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.764" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39118" g_stop="39057" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="726" r_length="62" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E690110" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42510" e_stop="42431"/>
          <exon e_start="41722" e_stop="41598"/>
          <exon e_start="41515" e_stop="41440"/>
          <exon e_start="41228" e_stop="41161"/>
          <exon e_start="40388" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39303" e_stop="39202"/>
          <exon e_start="39118" e_stop="39057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGC-CGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATG-CTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCAT</genome_strand>
        <mrna_strand>GTCATGCTGGCTTACTCGATCTCTGTATAGTGGTGCTTATTGCATTTAAACAGCAGGCTGATTATTGAGAATTTGATGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTCTTGGTGTTCATGTTGCACTGGCAATATTTTGACTACTATTGCAGAATGGCTTGTTAATTGGGTCTGGCTTCTGGAGTATTTCAACATCATTAAGAGATTGGCCTCTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCCAGAAAATGGCACGGACGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTTTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCCGGAGTCACACTGATGATGTTTGCTTGCATTGTGAGGATGAAACTAGGTTCTTATGCACATACAAATTAGGATATGAGACAGCTTGTCCAGGCTGTGATTGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCAAGAGTTTGGCTTACTTCATGGTTGCTCCATCTTTATGCCTATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGATGGCTGGCCCGCCAACTCATCAATCTGGAAATTTTTACAGGATTAATGGGATTTATCCTTGACCAC...................................................................................TATATTAACCCGATTGTGCTAAGCTCACAACATACATTTCAAGGATATCTTTTATCCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599040" ref_strand="+" ref_description="SGN-E599040 [52019]">
      <seq>ttttcttcaaatctcaattttcatggcggcgggaagctccatacatattttccttaattgtatacttcaataattgcctatatagaatcaattcgaattgaaccgatgacgatcaatccggagagtattacatcgtcgagcgacgacaacaacctccgaaggcggcggggaagtggcggcggcggcggtggtgataaatctgtggatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatttaacgagtgacgtaagggatggaagtggaaacggaggattggataaggtgagtgaggctgtgagtacgacggttgggaagatcagtgatggagatggagttcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcgccggctcaccggcggaacaaggaaagtcctcttagttctgccgctattttcaaacagagtcatgctggcctactcaatctctgtatagtggtgcttatagccgtaaacagcaggctgattattgacgaatttgatgaagtatggcttgttaattgggtcaggcttctggagtagttcaacatcagtaagagattggccacttctgatgtgctgtcttagccttccaattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacatagttataacgacagctttccatntttgtatcccgttttggtcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44741" stop="40864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44443" g_stop="44351" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76">
            <donor d_prob="0.928" d_score="0.77"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44274" g_stop="43890" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="483" r_length="388" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42511" g_stop="42431" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="565" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42430" i_stop="41672" i_length="759">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41671" g_stop="41598" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="639" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41440" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="715" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41228" g_stop="41164" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="782" r_length="67" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E599040" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44443" e_stop="44351"/>
          <exon e_start="44274" e_stop="43890"/>
          <exon e_start="42511" e_stop="42431"/>
          <exon e_start="41671" e_stop="41598"/>
          <exon e_start="41515" e_stop="41440"/>
          <exon e_start="41228" e_stop="41164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCC-T--TTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGC---GGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGA-GAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGC-TTCCAT-TTTGTATCCAGTTCTGGTCATCCT</genome_strand>
        <mrna_strand>TTTTCTTCAAATCTCAATTTTCATGGCGGCGGGAAGCTCCATACATATTTTCCTTAATTGTATACTTCAATAATTGCCTATATAGAATC-AATTCG............................................................................AATTGAACCGATGACGATCAATCCGGAGAGTATTACATCGTCGAGCGACGACAACAACCTCCGAAGGCGGCGGGGAAGTGGCGGCGGCGGCGGTGGTGATAAATCTGTGGATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATTTAACGAGTGACGTAAGGGATGGAAGTGGAAACGGAGGATTGGATAAGGTGAGTGAGGCTGTGAGTACGACGGTTGGGAAGATCAGTGATGGAGATGGAGTTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCGCCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCTGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCCTACTCAATCTCTGTATAGTGGTGCTTATAGCCGTAAACAGCAGGCTGATTATTGACGAATTTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG..................................................................................TCTTAGCCTTCCAATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAGTTATAACGACAGCTTTCCATNTTTGTATCCCGTTTTGGTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315515" ref_strand="+" ref_description="SGN-E315515 [cTOA-22-N24]">
      <seq>aagaaacttctaaacggctatggtgtgaattcaacaaacaaataaacaaatccttctgcaaatctcaattttcatggcggcgggaagctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtagcggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtgaggctgtgagtacgacgattgggaagattagtgatggagatggaattcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcaccggctcaccggcggaacaaggaaagtcctcttagttcggccgctattttcaaacagagtcatgctggcttactcaatctctgtatagtggtgcttattgccgtaaacagcaggctgattattgagaatttgatgaagtatggcttgttaattgggtcaggcttctggagtagttcaacatcagtaagagatggccacttctgatgtgctgtcttagtcttccgattttcccctctgctgcttttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44794" stop="41177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44494" g_stop="44351" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44274" g_stop="43890" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="529" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42511" g_stop="42431" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="610" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42430" i_stop="41672" i_length="759">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41671" g_stop="41598" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="683" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41477" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="722" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E315515" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44494" e_stop="44351"/>
          <exon e_start="44274" e_stop="43890"/>
          <exon e_start="42511" e_stop="42431"/>
          <exon e_start="41671" e_stop="41598"/>
          <exon e_start="41515" e_stop="41477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGT</genome_strand>
        <mrna_strand>AAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGA-TGGCCACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCCTCTGCTGCTTTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329851" ref_strand="+" ref_description="SGN-E329851 [cTOD-3-N9]">
      <seq>gctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtagcggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtgaggctgtgagtacgacgattgggaagattagtgatggagatggaattcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcaccggctcaccggcggaacaaggaaagtcctcttagttcggccgctattttcaaacagagtcatgctggcttactcaatctctgtatagtggtgcttattgccgtaaacagcaggctgattattgagaatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44708" stop="42133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44408" g_stop="44351" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44274" g_stop="43890" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="443" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42511" g_stop="42433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="522" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E329851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44408" e_stop="44351"/>
          <exon e_start="44274" e_stop="43890"/>
          <exon e_start="42511" e_stop="42433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGA</genome_strand>
        <mrna_strand>GCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330683" ref_strand="+" ref_description="SGN-E330683 [cTOD-8-K9]">
      <seq>cacgagatacttgttctggattttcgttgataaagaaacttctaaacggctatggtgtgaattcaacaaacaaataaacaaatccttctgcaaatctcaattttcatggcggcgggaagctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtancggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44826" stop="43757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44526" g_stop="44351" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44274" g_stop="44057" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="394" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E330683" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44526" e_stop="44351"/>
          <exon e_start="44274" e_stop="44057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTG</genome_strand>
        <mrna_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTANCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730639" ref_strand="+" ref_description="SGN-E730639 [LA24CH11]">
      <seq>ccattaagagtctctctgttttcctccatccaaaaaaaaacagcaaaattcccaaaatctatatcaaattaatcttcaattcttgcaaatttcttcaagatttttcagttttcgaacacccaattgactaaaataatggaaaaagatctcagattttgaacatttttgaagaaaaaagaagcaaagaagctaagataaaaggggatatacttgaaaatggagtgtgttggagctcaaaatgttggagcaatggcagtttttacgcgtccgagattgaaaccgttggtcgggaggagagttatgccaagaaaaaagcaatctttttggcgtatgagcagtatgaaagtaaaatgtaatagcagtagtggtagtgacagttgtgtagttgataaagaagattttgctgatgaagaagattatataaaagccggtggttcgcaacttgtatttgttcaaatgcagcagaaaaaagatatggatcagcagtctaagctttctgatgagttacgacaaatatctgctggacaaaccgtactggatttagtggtaatcggctgtggtcctgctggtcttgctcttgccgcggagtcagctaaattggggttgaacgtggggctcgttgggcctgatcttcctttcacaaacaactatggtgtatgggaggacgagttcaaagatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttgatgatgatgaacctattcttattggccgtgcctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49255" stop="52239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49544" g_stop="50050" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50957" g_stop="51128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="676" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51845" g_stop="51939" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="771" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E730639" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49544" e_stop="50050"/>
          <exon e_start="50957" e_stop="51128"/>
          <exon e_start="51845" e_stop="51939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATAACTTATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAGGTGATTGTAAATAATTTGAAGTTATATAGTAGTCGTTTGACTCAGTTCACCGAGGACATGACCTTAAACGTAGTAGAATTCTTATCCTTTTAGTAGTATTATTTAGTTATTGTGTAGTTTCTTATTCTTTGATGTGTAACTAGACCAAAAATGATCTTTAGCTCTAGTTAATTAACGGGCAATAACTTAGTTGCTGCTAAATATGTATTTTTAGTGGCAAATAACACTCTTTGTGAATGTCTCTAAAAGCTATAGTGACACTGGATCTAATTAACTAATGACGGTAAAAACTTAGCACTCTTTGTTAATGTATATATTTATTGCTGCTAAAAACTATTTTTGTTGTAGTATGTATTGCTATATGTTGCTGCATTTGTTTTTTATCTTTCTACTTTGTTGTCGTGTCGGATTCTTCCCTTTTGAGCCAAGGGTTTGATAAGCCATGTGTGTTCCATAGTTATTCAAGGAGGAAGAAGCGGAGAAATATAGGAGAAGATAAATCAGTTTCTTTCCATTTTTAGGAGTTATTTGGAAGTTCCTTATGGTTACTAGAAGTTATGTGTCTTTATCCTAACTGGTTATGAAGTAGGTATATTTAGTTATTATATAAATAATAGATCTAGTAATGTAGCTATGTTGAAAATTAATCTTTTATATGCAAAAAGATTACTCTGGAGATAGGAGATACTTGTGTCTCTTTTTGTATTTTCTATCTCTTTTCTCCAATATAAAACTTCGGTTTTCTATAAGGATCTTTCGCAGAAAACCTCTATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAGGTTGTAATCTTTATTTTATTTTCATGAAGAGTCTTTTCGTGTCTACATATCCTTTCATGAAACAGGACATCTTATTTTCCGGACTTTAGTCAGACTTCTGCATGTAGGCTTATTACTAAAAGATTTCTTGAAGCACATTGGACTTACATTCTCCTTTTAGCAATACGTCTACTTGAGATTCCTAGTAATTGTTAATTTCTCAGACATACTATGATCCTTTATCTTAATCTAATTTAAAATGATTAGATCCTCGCGTTTAACTTTCATTAAGAGTAAATATTAAGAAGGGTCTTAGAATACAAAGTATGATGGTAATCACTAGAAGTGCGTATGCAAGGGGACATTCGAATATGTGGTTTATTTTAGTAGTTCAAAGAGTCCAAAACCTTATCATATTTCTCTTCAAGAACCAAATGATTAAACGGATCAAGAATGCAAAATAATCTGAACAAAGGTGACCATAAGGAATAACAGAAAGTTACAAAAGTGTCTCAAAAACAAGTCACGGGATATCAATGGTCCAACGATAGGAGACTTGGTGATATCGGGAAATAACTTACCTTGGCTTAGTGAAAATTGATAAAATTAAGATGATGATAGCAGAAGATTCACTTTATTTTAGTTACATGCATGAACACAGGGTCTGTCATTATTTGTTTTGAGGTTTCTGATGCTCGATTAGTCTTTCAAATGATGTTTATATCTTCTTTTTTCAGATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGA</genome_strand>
        <mrna_strand>CCAT-TAA--GAGTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200533" ref_strand="+" ref_description="SGN-E200533 [cLEB-8-L15]">
      <seq>gcacgagattctctctgttttcctccatccaaaaaaaaacagcagaattcccaaaatctatatcaaattaatcttcaattcttgcaaatttcttcaagatttttcagttttcgaacacccaattgactaaaataatggaaaaagatctcagattttgaacatttttgaagaaaaaagaagcaaagaagcttagataaaaggggatatacttgaaaatggagtgtgttggagctcaaaatgttggagcaatggcagtttttacgcgtccgagattgaaaccgttggtcgggaggagagttatgccaagaaaaaagcaatctttttggcgtatgagcagtatgaaagtaaaatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49255" stop="50203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49548" g_stop="49903" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E200533" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49548" e_stop="49903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAAT</genome_strand>
        <mrna_strand>GCACGAGATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAGAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTTAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284644" ref_strand="+" ref_description="SGN-E284644 [cLES-3-N4]">
      <seq>tttcctccatccaaaaaaaaacagcaaaattcccaaaatctatatcaaattaatcttcaattcttgcaaatttcttcaagatttttcagttttcgaacacccaattgactaaaataatggaaaaagatctcagattttgaacatttttgaagaaaaaagaagcaaagaagctaagataaaaggggatatacttgaaaatggagtgtgttggagctcaaaatgttggagcaatggcagtttttacgcgtccgagattgaaaccgttggtcgggaggagagttatgccaagaaaaaagcaatctttttggcgtatgagcagtatgaaagtaaaatgtaatagcagtagtggtagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49266" stop="50220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49566" g_stop="49920" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E284644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49566" e_stop="49920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGA</genome_strand>
        <mrna_strand>TTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343866" ref_strand="+" ref_description="SGN-E343866 [cTOF-12-F19]">
      <seq>tcaaattaatcttcaattcttgcaaatttcttcaagatttttcagttttcgaacccccaattgactaaaataatggaaaaagctctcagattttgaacatttttgaagaaaaaagaagcaaagaagctaagataaaaggggatatacttgaaaatggagtgtgttggagctcaaaatgttggagcaatggcagtttttacgcgtccgagattgaaaccgttggtcgggaggagagttatgccaagaaaaaagcaatctttttggcgtatgagcagtatgaaagtaaaatgtaatagcagtagtggtagtgacagttgtgtagttgataaagaagattttgctgatgaagaagattatataaaagccnggtggttcgcaacttgtatttgttcaaatgcagcagaaaaaagatatggatcagcagtctaagctttctgatgagttacgacaaatatctgctggacaaaccgtactggatttagtggtaatcggcctgtggtccctgctggtcttgctcttgccgcggagtcagctaaattggggttggaacgtgggggctcgttgggccctgatcttcctttcacaaacactaatggtgtatgggaaggacgagttcaaagaatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49310" stop="52201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49610" g_stop="50050" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50957" g_stop="51128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="620" r_length="178" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51845" g_stop="51901" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="678" r_length="58" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E343866" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49610" e_stop="50050"/>
          <exon e_start="50957" e_stop="51128"/>
          <exon e_start="51845" e_stop="51901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCC-GGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAGGTGATTGTAAATAATTTGAAGTTATATAGTAGTCGTTTGACTCAGTTCACCGAGGACATGACCTTAAACGTAGTAGAATTCTTATCCTTTTAGTAGTATTATTTAGTTATTGTGTAGTTTCTTATTCTTTGATGTGTAACTAGACCAAAAATGATCTTTAGCTCTAGTTAATTAACGGGCAATAACTTAGTTGCTGCTAAATATGTATTTTTAGTGGCAAATAACACTCTTTGTGAATGTCTCTAAAAGCTATAGTGACACTGGATCTAATTAACTAATGACGGTAAAAACTTAGCACTCTTTGTTAATGTATATATTTATTGCTGCTAAAAACTATTTTTGTTGTAGTATGTATTGCTATATGTTGCTGCATTTGTTTTTTATCTTTCTACTTTGTTGTCGTGTCGGATTCTTCCCTTTTGAGCCAAGGGTTTGATAAGCCATGTGTGTTCCATAGTTATTCAAGGAGGAAGAAGCGGAGAAATATAGGAGAAGATAAATCAGTTTCTTTCCATTTTTAGGAGTTATTTGGAAGTTCCTTATGGTTACTAGAAGTTATGTGTCTTTATCCTAACTGGTTATGAAGTAGGTATATTTAGTTATTATATAAATAATAGATCTAGTAATGTAGCTATGTTGAAAATTAATCTTTTATATGCAAAAAGATTACTCTGGAGATAGGAGATACTTGTGTCTCTTTTTGTATTTTCTATCTCTTTTCTCCAATATAAAACTTCGGTTTTCTATAAGGATCTTTCGCAGAAAACCTCTATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGG-CTGTGGT-CCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTT-GAACGT-GGGGCTCGTTGGG-CCTGATCTTCCTTTCACAAACAACTATGGTGTATGGG-AGGACGAGTTCAAAGGTTGTAATCTTTATTTTATTTTCATGAAGAGTCTTTTCGTGTCTACATATCCTTTCATGAAACAGGACATCTTATTTTCCGGACTTTAGTCAGACTTCTGCATGTAGGCTTATTACTAAAAGATTTCTTGAAGCACATTGGACTTACATTCTCCTTTTAGCAATACGTCTACTTGAGATTCCTAGTAATTGTTAATTTCTCAGACATACTATGATCCTTTATCTTAATCTAATTTAAAATGATTAGATCCTCGCGTTTAACTTTCATTAAGAGTAAATATTAAGAAGGGTCTTAGAATACAAAGTATGATGGTAATCACTAGAAGTGCGTATGCAAGGGGACATTCGAATATGTGGTTTATTTTAGTAGTTCAAAGAGTCCAAAACCTTATCATATTTCTCTTCAAGAACCAAATGATTAAACGGATCAAGAATGCAAAATAATCTGAACAAAGGTGACCATAAGGAATAACAGAAAGTTACAAAAGTGTCTCAAAAACAAGTCACGGGATATCAATGGTCCAACGATAGGAGACTTGGTGATATCGGGAAATAACTTACCTTGGCTTAGTGAAAATTGATAAAATTAAGATGATGATAGCAGAAGATTCACTTTATTTTAGTTACATGCATGAACACAGGGTCTGTCATTATTTGTTTTGAGGTTTCTGATGCTCGATTAGTCTTTCAAATGATGTTTATATCTTCTTTTTTCAGA-TCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTG</genome_strand>
        <mrna_strand>TCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACCCCCAATTGACTAAAATAATGGAAAAAGCTCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCNGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCCTGTGGTCCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGGAACGTGGGGGCTCGTTGGGCCCTGATCTTCCTTTCACAAACACTAATGGTGTATGGGAAGGACGAGTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744858" ref_strand="+" ref_description="SGN-E744858 [GI|3005982]">
      <seq>ttgaaatggagtgtgttggagttcaaaatgttggagcaatggcagttttaacgcgtccgagattgaaccgttggtcgggaggagagttatgccaagaaaaaagcatctttttggcgtatgagcagtatgaaagtaaatgtaatagcagtagtggtagtgacagttgtgtagttgataaagaagattttgctgatgaagaagattatataaaagccggtggttcgcaacttgtatttgttcaaatgcagcagaaaaaagatatggatcagcagtctaagctttctgatgagttacgacaaatatctgctggacaaaccgtactggatttagtggtaatcggctgtggtcctgctggtcttgctcttgccgcggagtcagctaaattggggttgaacgtggggctcgttgggcctgatcttcctttcacaaacaactatggtgtatgggaggacgagttcaaagatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttgatgatgatgaacctattcttattggccgtgcctatggaagagttagtcgccattttctgcacgaggagttactcaaaaggtgtgtggaggcaggtgttttgtatctaaactcgaaagtggataggattgttgaggccacaaatggccagagtcttgtagagtgcgaaggtgatgttgtgattccctgcaggtttgtgactgttgcatcgggggcagcctcggggaaattcttgcagtatgagttgggaagtcctagagtttctgttcaaacagcttatggagtggaagttgaggttgataacaatccatttgacccgagcctgatggttttcatggattatagagattatctcagacacgacgctcaatctttagaagctaaatatccaacatttctttatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaactgatgctacgattgaacacccttggtgtaagaattaaagaaatttacgaggaggaatggtcttacataccggttggtggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcagatcactttctgaagctccaaaatgcgcctctgtacttgcaaatatattacgacaacattatagcaagaacatgcttaccagttcaagtatcccgagtatatcaactcaagcttggaacactctttggccacaagaacgaaaacgacaaagatcgtttttcctatttggactggctctgatattgcagctggatattgaggggataaggtcatttttccgcgcattcttccgtgtgccaaaatggatgtggcagggatttcttggttcaagtctttcttcagcagacctcatgttatttgccttctacatgtttattattgcaccaaatgacatgagaaaaggcttgatcagacatcttttatctgatcctactggtgcaacattgataagaacttatcttacattttagagtaaactcctcctacaataattgttgaatcagaggcctcattacttcagattcataacagaaatcgcggtctctcgaggcattgtatataacattttcactagcttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49457" stop="55129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49757" g_stop="50050" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50957" g_stop="51128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="462" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51845" g_stop="51980" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="598" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52093" g_stop="52203" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="709" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52283" g_stop="52385" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="812" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="956" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1064" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53457" g_stop="53582" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1287" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.513" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53796" g_stop="53928" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1288" r_stop="1420" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="54553" g_stop="54826" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1421" r_stop="1694" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E744858" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49757" e_stop="50050"/>
          <exon e_start="50957" e_stop="51128"/>
          <exon e_start="51845" e_stop="51980"/>
          <exon e_start="52093" e_stop="52203"/>
          <exon e_start="52283" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53582"/>
          <exon e_start="53796" e_stop="53928"/>
          <exon e_start="54553" e_stop="54826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAGGTGATTGTAAATAATTTGAAGTTATATAGTAGTCGTTTGACTCAGTTCACCGAGGACATGACCTTAAACGTAGTAGAATTCTTATCCTTTTAGTAGTATTATTTAGTTATTGTGTAGTTTCTTATTCTTTGATGTGTAACTAGACCAAAAATGATCTTTAGCTCTAGTTAATTAACGGGCAATAACTTAGTTGCTGCTAAATATGTATTTTTAGTGGCAAATAACACTCTTTGTGAATGTCTCTAAAAGCTATAGTGACACTGGATCTAATTAACTAATGACGGTAAAAACTTAGCACTCTTTGTTAATGTATATATTTATTGCTGCTAAAAACTATTTTTGTTGTAGTATGTATTGCTATATGTTGCTGCATTTGTTTTTTATCTTTCTACTTTGTTGTCGTGTCGGATTCTTCCCTTTTGAGCCAAGGGTTTGATAAGCCATGTGTGTTCCATAGTTATTCAAGGAGGAAGAAGCGGAGAAATATAGGAGAAGATAAATCAGTTTCTTTCCATTTTTAGGAGTTATTTGGAAGTTCCTTATGGTTACTAGAAGTTATGTGTCTTTATCCTAACTGGTTATGAAGTAGGTATATTTAGTTATTATATAAATAATAGATCTAGTAATGTAGCTATGTTGAAAATTAATCTTTTATATGCAAAAAGATTACTCTGGAGATAGGAGATACTTGTGTCTCTTTTTGTATTTTCTATCTCTTTTCTCCAATATAAAACTTCGGTTTTCTATAAGGATCTTTCGCAGAAAACCTCTATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAGGTTGTAATCTTTATTTTATTTTCATGAAGAGTCTTTTCGTGTCTACATATCCTTTCATGAAACAGGACATCTTATTTTCCGGACTTTAGTCAGACTTCTGCATGTAGGCTTATTACTAAAAGATTTCTTGAAGCACATTGGACTTACATTCTCCTTTTAGCAATACGTCTACTTGAGATTCCTAGTAATTGTTAATTTCTCAGACATACTATGATCCTTTATCTTAATCTAATTTAAAATGATTAGATCCTCGCGTTTAACTTTCATTAAGAGTAAATATTAAGAAGGGTCTTAGAATACAAAGTATGATGGTAATCACTAGAAGTGCGTATGCAAGGGGACATTCGAATATGTGGTTTATTTTAGTAGTTCAAAGAGTCCAAAACCTTATCATATTTCTCTTCAAGAACCAAATGATTAAACGGATCAAGAATGCAAAATAATCTGAACAAAGGTGACCATAAGGAATAACAGAAAGTTACAAAAGTGTCTCAAAAACAAGTCACGGGATATCAATGGTCCAACGATAGGAGACTTGGTGATATCGGGAAATAACTTACCTTGGCTTAGTGAAAATTGATAAAATTAAGATGATGATAGCAGAAGATTCACTTTATTTTAGTTACATGCATGAACACAGGGTCTGTCATTATTTGTTTTGAGGTTTCTGATGCTCGATTAGTCTTTCAAATGATGTTTATATCTTCTTTTTTCAGATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAGGTAAAATTTACTTAACTTGTTCCTTAGGTCATACGAATCGTTAATTTATTCTTTACAATATGTTTCATCATTTTAGTTTCCTTAAAGGTGTAATTCACATTAATCTTCCTAGGTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAGGTACATGAGATACATTTCTGCTGTTCTGGATTTCATTGATGTCATTTCAACCTATGTTGCTCAGACTCTTCAAAAATGCCACTGGACGCGTGTTGGATCCTCCAAAAGTAGTGCATTTTTGGTGAATCCAACACATTTGACGACATTTGTGGAGAATCCAAGCAACATAGATTCTGACCCTTCTGAACTAAGCAAGTGTTCATCTTTTATCAGCTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATGGTATGGCTTGATCTTTCTCCTTCATCTCATTATTTTTGTTAACGAGTTTAAATTCTATACACTAATAACTTCTACACAAATTAGATCAGATGAAAGATAACTACATGTAACCGTTCATAAAGTGGAATCAGTAACATTGAAACTGAGGCAGGCAACATCTTACAACATGTTGAAGTACTTTGATAGTGTAAAAGTTCGTTAGACAGACAGTATATATAAGTTAAATCCTTTTTGAATACATAAGACACTTTTGTTTTGAATAGTGACAATATTGTACTTTCAGTTCTAATGAGAAATCACGTCACTTGAAAGATAATTACATGTAACCATTCATAATAAGTTGGATCGGTAACATAGAAAATAAGGAAGGTAACCTCCTATAACATGTTACAATACTGTCAGTGTATATAAGCTAAATCCTTTTTGAATACACAAGACACTTTCGTTTTGAACAATGAGAATTTCAGTACTAACATGTAATCGTTCATAATAAGTTAAGATTAGTAACATAGAAAATAAGGAAGGTAATTCACATCCTACAACATGTAAAAGTACGTTGATAGCGTATACTGTCAGTGTATATAAGTTACATCTTTCAGTAACGAGAAAGTGTTTTTCGTTCAGGATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTA</genome_strand>
        <mrna_strand>TTGAA-ATGGAGTGTGTTGGAGTTCAAAATGTTGGAGCAATGGCAGTTTTAACGCGTCCGAGATTG-AACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGC-ATCTTTTTGGCGTATGAGCAGTATGAAAGT-AAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG................................................................................................................GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAAGGTGATGTTGTGATTCCCTGCAG...............................................................................GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAAGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATCTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG......................................................................................GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG.....................................................................................................................................................................................................................CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730190" ref_strand="+" ref_description="SGN-E730190 [LA23BD08]">
      <seq>cgacctttcaaagataggggtaaggtttgcgtacataccaccctcctcggaccacacttgtgggattacactgagtatgttgttgtactgtagcatactatattgctttgttcatcatactatctcagcttgcagttacgacaaatatctgctggacaaaccgtactggatttagtggtaatcggctgtggtcctgctggtcttgctcttgccgcggagtcagctaaattggggttgaacgtggggctcgttgggcctgatcttcctttcacaaacaactatggtgtatgggaggacgagttcaaagatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttgatgatgatgaacctattcttattggccgtgcctatggaagagttagtcgccattttctgcacgaggagttactcaaaaggtgtgtggaggcaggtgttttgtatctaaactcgaaagtggataggattgttgaggccacaaatggccagagtcttgtaaagtgcgagggtgatgttgtgattccctgcaggtttgtgactgttgcatcgggggcagcctcggggaaattcttgcagtatgagttgggaggtcctacagtttctgttcaaacagcttatggagtggaagttgaggttgataaccaatccatttgacccgagcctgatggttttcctggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50524" stop="53047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50822" g_stop="51128" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51845" g_stop="51980" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="443" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52093" g_stop="52203" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="554" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52283" g_stop="52385" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="657" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52702" g_stop="52747" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="704" r_length="47" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E730190" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50822" e_stop="51128"/>
          <exon e_start="51845" e_stop="51980"/>
          <exon e_start="52093" e_stop="52203"/>
          <exon e_start="52283" e_stop="52385"/>
          <exon e_start="52702" e_stop="52747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAGGTTGTAATCTTTATTTTATTTTCATGAAGAGTCTTTTCGTGTCTACATATCCTTTCATGAAACAGGACATCTTATTTTCCGGACTTTAGTCAGACTTCTGCATGTAGGCTTATTACTAAAAGATTTCTTGAAGCACATTGGACTTACATTCTCCTTTTAGCAATACGTCTACTTGAGATTCCTAGTAATTGTTAATTTCTCAGACATACTATGATCCTTTATCTTAATCTAATTTAAAATGATTAGATCCTCGCGTTTAACTTTCATTAAGAGTAAATATTAAGAAGGGTCTTAGAATACAAAGTATGATGGTAATCACTAGAAGTGCGTATGCAAGGGGACATTCGAATATGTGGTTTATTTTAGTAGTTCAAAGAGTCCAAAACCTTATCATATTTCTCTTCAAGAACCAAATGATTAAACGGATCAAGAATGCAAAATAATCTGAACAAAGGTGACCATAAGGAATAACAGAAAGTTACAAAAGTGTCTCAAAAACAAGTCACGGGATATCAATGGTCCAACGATAGGAGACTTGGTGATATCGGGAAATAACTTACCTTGGCTTAGTGAAAATTGATAAAATTAAGATGATGATAGCAGAAGATTCACTTTATTTTAGTTACATGCATGAACACAGGGTCTGTCATTATTTGTTTTGAGGTTTCTGATGCTCGATTAGTCTTTCAAATGATGTTTATATCTTCTTTTTTCAGATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAGGTAAAATTTACTTAACTTGTTCCTTAGGTCATACGAATCGTTAATTTATTCTTTACAATATGTTTCATCATTTTAGTTTCCTTAAAGGTGTAATTCACATTAATCTTCCTAGGTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAA-CAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATT</genome_strand>
        <mrna_strand>CGACCTTTCAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG................................................................................................................GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAAAGTGCGAGGGTGATGTTGTGATTCCCTGCAG...............................................................................GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTACAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTTGATAACCAATCCATTTGACCCGAGCCTGATGGTTTTCCTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624482" ref_strand="+" ref_description="SGN-E624482 [GI|12746310]">
      <seq>tagcggnnnnnaggatgagttcaaagatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttgatgatgatgatcctattcttattggccgtgcctatggaagagttagtcgccatttactgcacgaggagttactcaaaaggtgtgtggaggcaggtgttttgtatctaaactcgaaagtggataggattgttgaggccacaaatggccacagtcttgtagagtgcgagggtgatgttgtgattccctgcaggtttgtgactgttgcatcgggagcagcctcggggaaattcttgcagtatgagttgggaggtcctagagtttctgttcaaacagcttatggagtggaagttgaggtcgataacaatccatttgacccgagcctgatggttttcatggattatagagactatgtcagacacgacgctcaatctttagaagctaaatatccaacatttctctatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaattgatgttacgattgaacaccctcggtgtaagaattaaagaaatttatgaggaggaatggtcttacataccagttggaggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcagatcactgtctgaagctccaaaatgcgccttcgtgcttgcaaatatattacgacaaaatcatagcaagaatatgcttactagttcaagtaccccgagtatttcaactcaagcttggaacactctttggccacaagaacgaaaacgacaaagatcgtttttcctatttggactggctctgatattgcagctggatattgaggggataaggtcatttttccgcgcgttcttccgtgtgccaaaatggatgtggcagggatttcttggttcaagtctttcttnagcagacctcatgttatttgccttctacatgtttattattgcaccaaatgacatgagaagaggcttaatcagacatcttttatctgatcctactggtgcaacattgataagaacttatcttacattttagagtaaattcctcctacaatagttgttgaannagaggcctcattacttcagattcataacagaaatcgcggtctctcgaggccttgtatataacattttcactaggttaatattgcttgaataagttgcacagtttcagtttttgtatctgcttcttttttgtccaagatcatgtattganccaatttatatacattgccagtatatataaattttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51543" stop="55239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51845" g_stop="51980" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="162" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52093" g_stop="52203" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="273" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52283" g_stop="52385" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="376" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="520" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="628" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="725" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53457" g_stop="53582" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="851" r_length="126" r_score="0.921"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213">
            <donor d_prob="0.705" d_score="0.92"/>
            <acceptor a_prob="0.513" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53796" g_stop="53928" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="984" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.459" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54553" g_stop="54946" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1378" r_length="394" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E624482" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1352</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51845" e_stop="51980"/>
          <exon e_start="52093" e_stop="52203"/>
          <exon e_start="52283" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53582"/>
          <exon e_start="53796" e_stop="53928"/>
          <exon e_start="54553" e_stop="54946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAGGTAAAATTTACTTAACTTGTTCCTTAGGTCATACGAATCGTTAATTTATTCTTTACAATATGTTTCATCATTTTAGTTTCCTTAAAGGTGTAATTCACATTAATCTTCCTAGGTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAGGTACATGAGATACATTTCTGCTGTTCTGGATTTCATTGATGTCATTTCAACCTATGTTGCTCAGACTCTTCAAAAATGCCACTGGACGCGTGTTGGATCCTCCAAAAGTAGTGCATTTTTGGTGAATCCAACACATTTGACGACATTTGTGGAGAATCCAAGCAACATAGATTCTGACCCTTCTGAACTAAGCAAGTGTTCATCTTTTATCAGCTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATGGTATGGCTTGATCTTTCTCCTTCATCTCATTATTTTTGTTAACGAGTTTAAATTCTATACACTAATAACTTCTACACAAATTAGATCAGATGAAAGATAACTACATGTAACCGTTCATAAAGTGGAATCAGTAACATTGAAACTGAGGCAGGCAACATCTTACAACATGTTGAAGTACTTTGATAGTGTAAAAGTTCGTTAGACAGACAGTATATATAAGTTAAATCCTTTTTGAATACATAAGACACTTTTGTTTTGAATAGTGACAATATTGTACTTTCAGTTCTAATGAGAAATCACGTCACTTGAAAGATAATTACATGTAACCATTCATAATAAGTTGGATCGGTAACATAGAAAATAAGGAAGGTAACCTCCTATAACATGTTACAATACTGTCAGTGTATATAAGCTAAATCCTTTTTGAATACACAAGACACTTTCGTTTTGAACAATGAGAATTTCAGTACTAACATGTAATCGTTCATAATAAGTTAAGATTAGTAACATAGAAAATAAGGAAGGTAATTCACATCCTACAACATGTAAAAGTACGTTGATAGCGTATACTGTCAGTGTATATAAGTTACATCTTTCAGTAACGAGAAAGTGTTTTTCGTTCAGGATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATA-TGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACAATATTGCTAG</genome_strand>
        <mrna_strand>ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGATCCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTACTGCACGAGGAGTTACTCAAAAG................................................................................................................GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCACAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAG...............................................................................GTTTGTGACTGTTGCATCGGGAGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTCGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGACTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTCTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAATTGATGTTACGATTGAACACCCTCGGTGTAAGAATTAAAGAAATTTATGAGGAG......................................................................................GAATGGTCTTACATACCAGTTGGAGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAGATCACTGTCTGAAGCTCCAAAATGCGCCTTCGTGCTTGCAAATATATTACGACAAAATCATAGCAAGAATATGCTTACTAGTTCAAGTACCCCGAGTATTTCAACTCAAG.....................................................................................................................................................................................................................CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCGTTCTTCCGTGTGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTNAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAGAGGCTTAATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAATTCCTCCTACAATAGTTGTTGAANNAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCCTTGTATATAACATTTTCACTAGGTTAATATTGCTTGAATAAGTTGCACAGTTTCAGTTTTTGTATCTGCTTC-TTTTTTGTCCAAGATCATGTATTGANCCAATTTATATACATTGCCAGTATATATAAATTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415803" ref_strand="+" ref_description="SGN-E415803 [STM-22-A5]">
      <seq>gttctgtatctaaactcgaaagtggataggattgttgaggccacaaatggccacagtcttgtagagtttctgttcaaacagcttatggagtggaagttgaggttgataacaatccatatgacccgagcctgatggttttcatggattatagagactatgtcagacacgacgctcaatctttagaagctaaatatccaacatttctctatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaactgatgttacgattgaacaccctcggtgttagaattaaagaaatttacgaggaggaatggtcttacataccagttggaggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcagatcactgtctgaagctccaaaatgcgcctncgtgcttgcaaatatattacgacaaaatcatagcaagaacatgcttactagttcaagtaccccgagtatttcaactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51809" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52109" g_stop="52175" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52176" i_stop="52351" i_length="176">
            <donor d_prob="0.722" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52352" g_stop="52385" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="101" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="245" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="353" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="450" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53457" g_stop="53582" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="576" r_length="126" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E415803" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52109" e_stop="52175"/>
          <exon e_start="52352" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG</genome_strand>
        <mrna_strand>GTTCTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCACAGTCTTGTAGAGT................................................................................................................................................................................TTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTTGATAACAATCCATATGACCCGAGCCTGATGGTTTTCATGGATTATAGAGACTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTCTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGTTACGATTGAACACCCTCGGTGTTAGAATTAAAGAAATTTACGAGGAG......................................................................................GAATGGTCTTACATACCAGTTGGAGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAGATCACTGTCTGAAGCTCCAAAATGCGCCTNCGTGCTTGCAAATATATTACGACAAAATCATAGCAAGAACATGCTTACTAGTTCAAGTACCCCGAGTATTTCAACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437729" ref_strand="+" ref_description="SGN-E437729 [cSTA-4-H14]">
      <seq>gttctgtatctaaactcgaaagtggataggattgttgaggccacaaatggccacagtcttgtagagtttctgttcaaacagcttatggagtggaagttgaggttgataacaatccatatgacccgagcctgatggttttcatggattatagagactatgtcagacacgacgctcaatctttagaagctaaatatccaacatttctctatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaactgatgttacgattgaacaccctcggtgttagaattaaagaaatttacgaggaggaatggtcttacataccagttggaggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcaaatcactgtctgaagctccaaaatgcgcctccgtgcttgcaaatatattacgacaaaatcatagcaagaacatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51809" stop="53849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52109" g_stop="52175" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52176" i_stop="52351" i_length="176">
            <donor d_prob="0.722" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52352" g_stop="52385" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="101" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="245" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="353" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="450" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53457" g_stop="53549" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="543" r_length="93" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E437729" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52109" e_stop="52175"/>
          <exon e_start="52352" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTA</genome_strand>
        <mrna_strand>GTTCTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCACAGTCTTGTAGAGT................................................................................................................................................................................TTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTTGATAACAATCCATATGACCCGAGCCTGATGGTTTTCATGGATTATAGAGACTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTCTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGTTACGATTGAACACCCTCGGTGTTAGAATTAAAGAAATTTACGAGGAG......................................................................................GAATGGTCTTACATACCAGTTGGAGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAAATCACTGTCTGAAGCTCCAAAATGCGCCTCCGTGCTTGCAAATATATTACGACAAAATCATAGCAAGAACATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448183" ref_strand="+" ref_description="SGN-E448183 [cSTS-1-P24]">
      <seq>gtagaatgcgagggtgatgttgtgattccctgcaggtttgtgactgttgcatcgggagcagcctcggggaaattcttgcagtatgagttgggaggtcctagagtttctgttcaaacagcttatggagtggaagttgaggtcgataacaatccatttgacccgagcctgatggttttcatggattatagagactatgtcagacacgacgctcaatctttagaagctaaatatccaacatttctctatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaactgatgttacgattgaacaccctcggtgtaagaattaaagaaatttacgaggaggaatggtcttacataccagttggaggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcagatcactgtctgaagctccaaaatgcgcctccgtgcttgcaaatatattacgacaaaatcatagcaagaacatgcttactagttcaagtaccccgagtatttcaactcaagcttggaacaccctttgggccacagaacgaaaacgacaaagatcgtttgtcctatttggactggctctgatattgcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51869" stop="54176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52169" g_stop="52203" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52283" g_stop="52385" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="138" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="282" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="390" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="487" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53457" g_stop="53582" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="613" r_length="126" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213">
            <donor d_prob="0.705" d_score="0.94"/>
            <acceptor a_prob="0.513" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53796" g_stop="53876" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="694" r_length="81" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E448183" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52169" e_stop="52203"/>
          <exon e_start="52283" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53582"/>
          <exon e_start="53796" e_stop="53876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAGGTACATGAGATACATTTCTGCTGTTCTGGATTTCATTGATGTCATTTCAACCTATGTTGCTCAGACTCTTCAAAAATGCCACTGGACGCGTGTTGGATCCTCCAAAAGTAGTGCATTTTTGGTGAATCCAACACATTTGACGACATTTGTGGAGAATCCAAGCAACATAGATTCTGACCCTTCTGAACTAAGCAAGTGTTCATCTTTTATCAGCTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGG</genome_strand>
        <mrna_strand>GTAGAATGCGAGGGTGATGTTGTGATTCCCTGCAG...............................................................................GTTTGTGACTGTTGCATCGGGAGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTCGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGACTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTCTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGTTACGATTGAACACCCTCGGTGTAAGAATTAAAGAAATTTACGAGGAG......................................................................................GAATGGTCTTACATACCAGTTGGAGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAGATCACTGTCTGAAGCTCCAAAATGCGCCTCCGTGCTTGCAAATATATTACGACAAAATCATAGCAAGAACATGCTTACTAGTTCAAGTACCCCGAGTATTTCAACTCAAG.....................................................................................................................................................................................................................CTTGGAACACCCTTTGGGCCACAGAACGAAAACGACAAAGATCGTTTGTCCTATTTGGACTGGCTCTGATATTGCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217755" ref_strand="+" ref_description="SGN-E217755 [cLEL-23-A3](-)">
      <seq>atttttccgcgcattcttccgtgtgccaaaatggatgtggcagggatttcttggttcaagtctttcttcagcagacctcatgttatttgccttctacatgtttattattgcaccaaatgacatgagaaaaggcttgatcagacatcttttatctgatcctactggtgcaacattgataagaacttatcttacattttagagtaaactcctcctacaataattgttgaatcagaggcctcattacttcagattcataacagaaatcgcggtctctcgaggcattgtatataacattttcactagcttaatatgcttgaataagttgcatagtttcagtttttgtatctgcttctttttttgtcctagatcatgtattgatccaatctacatacattgccaatatatataaattttacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="53596" stop="55239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53896" g_stop="53928" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54553" g_stop="54936" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="417" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E217755" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53896" e_stop="53928"/>
          <exon e_start="54553" e_stop="54936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCCGCGCATTCTTCCGTGTGCCAAAATGGTATGGCTTGATCTTTCTCCTTCATCTCATTATTTTTGTTAACGAGTTTAAATTCTATACACTAATAACTTCTACACAAATTAGATCAGATGAAAGATAACTACATGTAACCGTTCATAAAGTGGAATCAGTAACATTGAAACTGAGGCAGGCAACATCTTACAACATGTTGAAGTACTTTGATAGTGTAAAAGTTCGTTAGACAGACAGTATATATAAGTTAAATCCTTTTTGAATACATAAGACACTTTTGTTTTGAATAGTGACAATATTGTACTTTCAGTTCTAATGAGAAATCACGTCACTTGAAAGATAATTACATGTAACCATTCATAATAAGTTGGATCGGTAACATAGAAAATAAGGAAGGTAACCTCCTATAACATGTTACAATACTGTCAGTGTATATAAGCTAAATCCTTTTTGAATACACAAGACACTTTCGTTTTGAACAATGAGAATTTCAGTACTAACATGTAATCGTTCATAATAAGTTAAGATTAGTAACATAGAAAATAAGGAAGGTAATTCACATCCTACAACATGTAAAAGTACGTTGATAGCGTATACTGTCAGTGTATATAAGTTACATCTTTCAGTAACGAGAAAGTGTTTTTCGTTCAGGATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACA</genome_strand>
        <mrna_strand>ATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTACATACATTGCCAATATATATAAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389776" ref_strand="+" ref_description="SGN-E389776 [TUS-4-E12]">
      <seq>gatgcactattatcatctgatggcagatatagaaggtttactagacgagagattgaggttgcaactgactacttttccgagtctaagatgattggtgaaggagcatacgggaaagtttacaaaggcgatcttgatcacacccctgttgccatcaaagttcttcattctgatgcatcagaaaagaaagaggaatttctaaaagaggtggaggttcttagccagttacatcacccacacattgttttactgcttggagcctgtcctgaaaatggttgccttgcttatgagtatatggagaatggaaacctggaagattacatattggaacggaacagcaaaccattaccttggttttctcgattcaggatactttttgaagtggcatgtgctcttgcattcctacacaactcaaagcctgagcctgttattcatcgagatctgaaaccaggaaatatattgttggacaaaaattttgtgagcaaaataggagatgtaggtctagcaaagattatatcagatgttgtaccagaaaatgttacagaatacaggaactctgttcttgctggcacccttggttacatggatccagagtatcaaagaactggcacactcagaccaaaatctgatctgtatgcttttggaataataatacttncattactaactgctcgtcgtcctaatggccttataatgaaatttgagaatgctataaattgtaattcattagtggatatacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58736" stop="60678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59036" g_stop="59239" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59240" i_stop="59841" i_length="602">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59842" g_stop="60378" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="741" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E389776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59036" e_stop="59239"/>
          <exon e_start="59842" e_stop="60378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAGGTGTTTCTTCAAGATTTGATGTTTTCTCTTTCATTTCAAGATATGCAATTTTAGACATGCCTCCTTTTACAGAAAAGTTACGCATAGTCCATCTTCTTGATGCTGTTATTAATACCACTTATCTTATCAAAAAAAAAAAAAGAAATGTTACGCATAGTGTAGTGGAAAGACCCCTCGACCTTCTCAAGCAAGAGTTTTGAGGTTCGAGTCACCAGGGAGCAAAGTGACAAAAGGGCCACTATTGACTCTTTGGTAGGGGGATGGAGTTCACCATATCAATTAATAAGAGAAGAACCATCCCCTATTGTATTCCTAGGTGCTGTAGTTTATAGTTTCAAACACTTATGCAGTAGTTTATAATTTCAAACAGTTTTGCAGTATCATTGTTAACACATAACAAGACTTCCAACTTCACACCTTACATGCCTTGTCCTTTTTTCCTCAAAAGCGCTCCTCATACATCATGCATTAGCTCTTATGCACAATTATTTGTGTCAGGAATTCATGGATCGTTTACCAGATATAGTTTGTCCCAGATCTAATTGTAGTCTTTTATAGCAGATATCCTCAATTTCTGTTGATATAGTAGTAATCATTTGTAGGTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTCAATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGAT</genome_strand>
        <mrna_strand>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTNCATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231524" ref_strand="+" ref_description="SGN-E231524 [cLED-4-F21]">
      <seq>atgcactattatcatctgatggcagatatagaaggtttactagacgagagattgaggttgcaactgactacttttccgagtctaagatgattggtgaaggagcatacgggaaagtttacaaaggcgatcttgatcacacccctgttgccatcaaagttcttcattctgatgcatcagaaaagaaagaggaatttctaaaagaggtggaggttcttagccagttacatcacccacacattgttttactgcttggagcctgtcctgaaaatggttgccttgcttatgagtatatggagaatggaaacctggaagattacatattggaacggaacagcaaaccattaccttggttttctcgattcaggatactttttgaagtggcatgtgctcttgcattcctacacaactcaaagcctgagcctgttattcatcgagatctgaaaccaggaaatatattgttggacaaaaattttgtgagcaaaataggagatgtaggtctagcaaagattatatcagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58737" stop="60460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59037" g_stop="59239" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59240" i_stop="59841" i_length="602">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59842" g_stop="60160" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="522" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E231524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59037" e_stop="59239"/>
          <exon e_start="59842" e_stop="60160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAGGTGTTTCTTCAAGATTTGATGTTTTCTCTTTCATTTCAAGATATGCAATTTTAGACATGCCTCCTTTTACAGAAAAGTTACGCATAGTCCATCTTCTTGATGCTGTTATTAATACCACTTATCTTATCAAAAAAAAAAAAAGAAATGTTACGCATAGTGTAGTGGAAAGACCCCTCGACCTTCTCAAGCAAGAGTTTTGAGGTTCGAGTCACCAGGGAGCAAAGTGACAAAAGGGCCACTATTGACTCTTTGGTAGGGGGATGGAGTTCACCATATCAATTAATAAGAGAAGAACCATCCCCTATTGTATTCCTAGGTGCTGTAGTTTATAGTTTCAAACACTTATGCAGTAGTTTATAATTTCAAACAGTTTTGCAGTATCATTGTTAACACATAACAAGACTTCCAACTTCACACCTTACATGCCTTGTCCTTTTTTCCTCAAAAGCGCTCCTCATACATCATGCATTAGCTCTTATGCACAATTATTTGTGTCAGGAATTCATGGATCGTTTACCAGATATAGTTTGTCCCAGATCTAATTGTAGTCTTTTATAGCAGATATCCTCAATTTCTGTTGATATAGTAGTAATCATTTGTAGGTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTG</genome_strand>
        <mrna_strand>ATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389777" ref_strand="+" ref_description="SGN-E389777 [TUS-4-E12](-)">
      <seq>ttgataagtcagttcctgattggccgttgattgaagtagaggagctaggtaggatggcgctaaaatgctgcatgcttagatgccgagagagacctgacctcgatactgaagttcttccacttctgaaaagacttgctggatatgctgacatgcatagcaatgaagagaagaaccttatacacgcacctattcagtacttatgcccgatccttcaggaagtaatggaagatccacagatagcagctgatggctatacgtatgagcatagagcaataaagttatggtttgacagatacagtgtatcacccatgacaaaacagagactacagcacaagctagtcacgccaaaccacacattgcgacttgctatacaagagtggagatcaacattcaacaacattcagatagagaaaaactagtgattgctgtggatagttcaaggtagagtctctcatttacttatttctaattcattcacttgtggactggtttgaatgctgcataacatcatcttcaaccatacctccactgtacttccggtgcaaagggtcaaaacgttcatgatgatatcaagccaaaacaataactagagaaaccaagaaaagaaggaaaagtaataggactgttgtatacacaagtgacttcagaacaaagtcgtcaagtattatgtttgcatatatacattattaccgagtgtgcattagcgactgtaaatcttttgaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="60074" stop="61506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60374" g_stop="60588" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60589" i_stop="60694" i_length="106">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60695" g_stop="61206" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="727" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E389777" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60374" e_stop="60588"/>
          <exon e_start="60695" e_stop="61206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAGGTGAGAACTGGAAATTCCAGAGGATGACCTAGTCATTACTAGTGTTATTTTTGTGCATGCATCTCATTCTGCTTTCTGCTCTTGTTATCATGCAACATCATTACAGGAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTAT</genome_strand>
        <mrna_strand>TTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAG..........................................................................................................GAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCGACTGTAAATCTTTTGAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202782" ref_strand="+" ref_description="SGN-E202782 [cLEB-1-L20]">
      <seq>gcacgagatcatcttcaaccatacctccactgtacttccggtgcaaagggtcaaaacgttcatgatgatatcaagccaaaacaataactagagaaaccaagaaaagaaggaaaagtaataggactgttgtatacacaagtgacttcagaacaaagtcgtcaagtattatgtttgcatatatacattattaccgagtgtgcattagcaactgtaaatcttttgaagtattgtaaagctcctgattgtaggaaaccagtagaaaatatgtgcaaaatttaacataattctgagagtgagaccatacattctgattcatgattcttctggtaggagtttgaagtattgcctagagatgatttgatatgacatgacacaatttcagtttactgtggacatgaccttagataggaggaaatagattatgatagaaggttagtagatagtagagaattgactcgtttctcgttactagttagttggagtttatgtctttcgatttctgttactatttgttgtttattgcacttcgatgattctagtatttcgttgtagtttgtgctccttttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="60679" stop="61851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60979" g_stop="61557" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E202782" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60979" e_stop="61557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAGATTGCTT</genome_strand>
        <mrna_strand>GCACGAGATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281373" ref_strand="+" ref_description="SGN-E281373 [cLEL-1-N8](-)">
      <seq>gaattatgttaaattttgcacatattttctactggtttcctacaatcaggagcttttcaatacttcaaaagatttacagttgctaatgcacactcggtaataatgtatatatgcaaacataatacttgacgactttgttctgaagtcacttgtgtatacaacagtcctattacttttccttcttttcttggtttctctagttattgtgttggcttgatatcatcatgaacgttttgaccctttgcaccggaagtacagtggaggtatggttgaagatgatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61565" stop="60679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61265" g_stop="60979" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E281373" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61265" e_stop="60979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTATGTTAAATTTTGCACATATTTTCTACTGGTTTCCTACAATCAGGAGCTTTACAATACTTCAAAAGATTTACAGTTGCTAATGCACACTCGGTAATAATGTATATATGCAAACATAATACTTGACGACTTTGTTCTGAAGTCACTTGTGTATACAACAGTCCTATTACTTTTCCTTCTTTTCTTGGTTTCTCTAGTTATTGTTTTGGCTTGATATCATCATGAACGTTTTGACCCTTTGCACCGGAAGTACAGTGGAGGTATGGTTGAAGATGATGTTATGC</genome_strand>
        <mrna_strand>GAATTATGTTAAATTTTGCACATATTTTCTACTGGTTTCCTACAATCAGGAGCTTTTCAATACTTCAAAAGATTTACAGTTGCTAATGCACACTCGGTAATAATGTATATATGCAAACATAATACTTGACGACTTTGTTCTGAAGTCACTTGTGTATACAACAGTCCTATTACTTTTCCTTCTTTTCTTGGTTTCTCTAGTTATTGTGTTGGCTTGATATCATCATGAACGTTTTGACCCTTTGCACCGGAAGTACAGTGGAGGTATGGTTGAAGATGATCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299720" ref_strand="-" ref_description="SGN-E299720 [cLEW-1-O14]">
      <seq>attttcattggcattttcacgaacacgtttagtgccagagacaaccccatgatcaaaatcaaatttttggtttttgtaatcaaaaagggtgtgattttcaactgattttgattctgggggggtttcgttttcgacacccagaaatttatttaggatttcctcaactgggttgtgatcaaaatcgttaatttttatctttttcgacatggattgatgatgatgatgatcagaagatggagaaaaaaagtcgagtttttgaaaaaagtttaaagaattgaaatcttcttgtgatggaaatgaagaagaaaaagaagtgatttccattcaaataatgaagctttttttttttaactcttttaatctttttccaggtgtgaaagtatttgaagattttgtcaaatatgaaacaaagaaaagtgtgtgaacccccaagaagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66178" stop="54634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65878" g_stop="65441" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65440" i_stop="63945" i_length="1496">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63944" g_stop="63881" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="500" r_length="62" r_score="0.703"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E299720" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65878" e_stop="65441"/>
          <exon e_start="63944" e_stop="63881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACACCATGATCAAAATCAAATTTTTGGTTCTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGTGCGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAGAAAGTCGAGTTCTTGAAAAAAGTTTAGAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTCTTAATTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACACACAAGAAGTAATGAATTGAAGAAAATTAAAAATGGAGTTTTTGAATATATAGAGAATTTTAATGCACGCGGTGAAAGGTGGGGGTGGGTGGGGTGGGGTGGGGGTTTTGTTGAGGGTGGTGTGGGGTGGGGGGCCAGGGGACGATGCGGGAGGGACATAGGGAGGGGGGGGGAGGGGGCCAGGGAGGACGGGGGGTGGCGGGTGTTGTATGGTGGGAAGGGGGGAGGGGCTGCCGAAACCGGATGAAGGGCATGAGAGCATAATCAGTGGAGAGGTAAGATGGTATTAGCGTTAGAGACGTTTTGTGTGCGTTACGGGGATTGTTAGGAGTTACTGGAAATCATAATAAGCCAAGATCTAATTTAAACTTAGACACTGGCCTCGAACAGTTAGAAGATATAGATATGGAACTATGCCCTAAAACAATGTGTGTCCCCAACGCCCAACATTGTGCACTACAACCTTACAATACCCTCAACATAGAACTTCATACGCGACTCATAAATCAGAAGCAACTGAAACACACATGACGAGATGCCCGTGGACGCACACATCAATACTACGCTTGCCAATACGATTAATGTCAGATGTGTACGTATGGACACTCTTGAAATTTCCCAATGAGTCTATTTTTCGTTTTCTGACCCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGAAGGGGAAGAGGAAGAGAGAAGGAAGAAGGAGGAAGGAAGGGGAGGGGGGAAGGAGGGAGAGGAGGAAGGAAGGGAGGGGGGGAGGGAGAGGGGGAGAAAGAAGAGGGGGGAGAGAGGGNGAGAGAAAGGGAAAGAGAAAAGAGAGGGGAAAGAAAGAGGAGAGAAAGGAGAGAGAAGAGAGAGAAGAAAGAGGAGAAGAAAAAAGAGAAGAGGAAAGGAGAAGGAAAAGAGAAGAAGGAGAGGAGAGAAGAAAAGGAGAAGAAAGAAAGAGAAGAGAAAAAAAAAGAAAAAAAAAAGGAAGAGAAAGNAGAAAAAAGAAGAAAGGAAGAGGAAAAGAAGAAGAGGAAGAGGGGGAGGGGAGAGAAAGAAGAGAAAAGAAGAGAGGAGGAAAAAAGGAAAAGGGGAAGAAGAGAAAAAAGGAAGGGGAAGAGAAAGGAAAAGAGAAGAGAGAGAAGGGAAGAAAAAAAAAGAGAGAGAAGAAGAAGAAGGAAAGAGNAAAAGAAAAGAGAAAGAGAAGAGGGAAGGAAGGAAAGGGGGAAAAGGGAAGGGAGAAAGAAGGAAGAGGAGAAAAAAANGGAAAGGAGGGAGGGAAGAGAAAAAGGGGAAAAAAAAGAAAGAANGGGAAGAAGGGGGAAGGAAGGAGAAGAAGGAGAGAGAAAAAAAGAGGGGGGGGGAGAGAGGAGGGAGGAGAAGGGGGAGAGAGAAGAAGGAAGAGAAGGAGGAGAGAAGGGAGAGAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAAAGGAAGAAAAGAGAAAAAAAAAGAAAGAAAAAAAAGGAGGAAAGAAAAA</genome_strand>
        <mrna_strand>ATTTTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACCCCATGATCAAAATCAAATTTTTGGTTTTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGGGGGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAAAAAGTCGAGTTTTTGAAAAAAGTTTAAAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTTTTAACTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACCCCCAAGAAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA-AAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747391" ref_strand="-" ref_description="SGN-E747391 [GI|47104571]">
      <seq>ttttttttttttttttttttttttacttcttgtgtgttcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagagttaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgttgtacacttcacaatatctgtgagattagaggtgaagaattacgtcaagaattaaggttcgatttggttgatgatgaaatgatcccggaagttgttgtgagatcaatgaacgcgatgaaagtaagagatcagattgctcacaaactattacatcataatcactcagggactagttttctatgatgaaatatggaaattcaagatttagtttacatgttttagagcttgaatattaggggtaattcttttacatggtttatttgagtcatgttatagaataagttattattgatcttcatagaagatttgcttttccatttcaagtatttcatattgtttaggacattatgaattggactcaattctttatcaaagaaatttagccaaaaaaattggaagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="54647" stop="67527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65418" g_stop="67224" g_length="1807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1807" r_length="1807" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1811" polyA_stop="1834"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E747391" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1807</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747391" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65418" e_stop="67224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAATTTTCTTCAATTCATTACTTCTTGTGTGTTCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGGACTAGTTTTCTATGATGAAATATGGAAATTCAAGATTTAGTTTACATGTTTTAGAGCTTGAATATTAGGGGTAATTCTTTTACATGGTTTATTTGAGTCATGTTATAGAATAAGTTATTATTGATCTTCATAGAAGATTTGCTTTTCCATTTCAAGTATTTCATATTGTTTAGGACATTATGAATTGGACTCAATTCTTTATCAAAGAAATTTAGCCAAAAAAATTGGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTACTTCTTGTGTGTTCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAGTTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGGACTAGTTTTCTATGATGAAATATGGAAATTCAAGATTTAGTTTACATGTTTTAGAGCTTGAATATTAGGGGTAATTCTTTTACATGGTTTATTTGAGTCATGTTATAGAATAAGTTATTATTGATCTTCATAGAAGATTTGCTTTTCCATTTCAAGTATTTCATATTGTTTAGGACATTATGAATTGGACTCAATTCTTTATCAAAGAAATTTAGCCAAAAAAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271997" ref_strand="+" ref_description="SGN-E271997 [cLEM-8-M20]">
      <seq>ttcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65154" stop="66387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65454" g_stop="66087" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E271997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65454" e_stop="66087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATC</genome_strand>
        <mrna_strand>TTCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213805" ref_strand="+" ref_description="SGN-E213805 [cLEC-76-E18]">
      <seq>tcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctangcgatttggggtaggtatatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65155" stop="66522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65455" g_stop="66222" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E213805" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65455" e_stop="66222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTAC</genome_strand>
        <mrna_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTANGCGATTTGGGGTAGGTATATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206176" ref_strand="+" ref_description="SGN-E206176 [cLEC-29-E21]">
      <seq>tcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65155" stop="66397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65455" g_stop="66097" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E206176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65455" e_stop="66097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACA</genome_strand>
        <mrna_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240738" ref_strand="+" ref_description="SGN-E240738 [cLED-24-K11]">
      <seq>tcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65155" stop="66177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65455" g_stop="65877" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E240738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65455" e_stop="65877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAA</genome_strand>
        <mrna_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202150" ref_strand="+" ref_description="SGN-E202150 [cLEC-7-K12]">
      <seq>tcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtggaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65155" stop="66166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65455" g_stop="65866" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E202150" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65455" e_stop="65866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAAT</genome_strand>
        <mrna_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTGGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242838" ref_strand="+" ref_description="SGN-E242838 [cLED-31-H16]">
      <seq>tcacacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65155" stop="66130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65455" g_stop="65830" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E242838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65455" e_stop="65830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCAT</genome_strand>
        <mrna_strand>TCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244657" ref_strand="+" ref_description="SGN-E244657 [cLED-38-I11]">
      <seq>cacacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctgggtattctcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65158" stop="66238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65458" g_stop="65938" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E244657" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65458" e_stop="65938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAG</genome_strand>
        <mrna_strand>CACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGGTATTCTCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201091" ref_strand="+" ref_description="SGN-E201091 [cLEC-10-O13]">
      <seq>acacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65159" stop="66206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65459" g_stop="65906" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E201091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65459" e_stop="65906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTG</genome_strand>
        <mrna_strand>ACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201944" ref_strand="+" ref_description="SGN-E201944 [cLEC-7-M13]">
      <seq>acacttttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65159" stop="66173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65459" g_stop="65873" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E201944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65459" e_stop="65873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATG</genome_strand>
        <mrna_strand>ACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202537" ref_strand="+" ref_description="SGN-E202537 [cLEC-6-P9]">
      <seq>tttctttgtttcatatttgacaaaatcttcaaatactttcacacctggaaaaagattaaaagaattaagaaaaaaaagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65164" stop="66167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65464" g_stop="65867" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E202537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65464" e_stop="65867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATG</genome_strand>
        <mrna_strand>TTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214136" ref_strand="+" ref_description="SGN-E214136 [cLEC-80-J14]">
      <seq>aagcttcattatttgaatggaaatcacttctttttcttcttcatttccatcacaagaagatttcaattctctaaacttttttcaagaactcgactttctttctccatcttctgatcatcatcatcatcaatccatgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaagatggtctagttgaggttatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65239" stop="66508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="66208" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E214136" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="66208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGG</genome_strand>
        <mrna_strand>AAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358093" ref_strand="+" ref_description="SGN-E358093 [cLHT-23-F7]">
      <seq>aagatttcaattctctaaacttttttcaagaactcgactttcttcctccatcttctgatcatcatcatcaatccatgtcgaaaaagattaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgagacgaaggatcatggtgttgtatctggcactaaacgtgttcgtgaaaatgcctatgagaatgaggatggtctagtggaggttatctctggttctggctctggttgttctcagcagccattacagcagaggagattatgggtgaaaaacagatcaaatgcgtggtgggaacaatgtaaccgtccggatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65336" stop="66387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65595" g_stop="66087" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E358093" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65595" e_stop="66087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTT---------GATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATC</genome_strand>
        <mrna_strand>AAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTCCTCCATCTTCTGATCATCATCATCA---ATCCATGTCGAAAAAGATTAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGAGACGAAGGATCATGGTGTTGTATCTGGCACTAAACGTGTTCGTGAAAATGCCTATGAGAATGAGGATGGTCTAGTGGAGGTTATCTCTGGTTCTGGCTCTGG-T-T-G---TTCTCAGCAGCCATTACAGCAGAGGAGATTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAACAATGTAACCGTCCGGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205625" ref_strand="+" ref_description="SGN-E205625 [cLEC-21-L21]">
      <seq>catgtcgaaaaagataaaaattaacgattttgatcacaacccagttgaggaaatcctaaataaatttctgggtgtcgaaaacgaaacgcacccagaatcaaaatcagttgaaaatcacaccctttttgattacaagaaccaaaaatttgattttgatcatggtgttgtctctggcactaaacgtgttcgtgaaaatgccaatgagaatgaacatggtctagttgaggttatctctggctctggctctggttctggttattctcagcagccattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65371" stop="66245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65671" g_stop="65945" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E205625" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65671" e_stop="65945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTAC</genome_strand>
        <mrna_strand>CATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAACATGGTCTAGTTGAGGTTATCTCTGGCTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228261" ref_strand="+" ref_description="SGN-E228261 [cLED-2-D8]">
      <seq>tatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65599" stop="66731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65899" g_stop="66431" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E228261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65899" e_stop="66431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAA</genome_strand>
        <mrna_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239397" ref_strand="+" ref_description="SGN-E239397 [cLED-23-A3]">
      <seq>tatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaatttaacacgagtttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65599" stop="66635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65899" g_stop="66335" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E239397" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65899" e_stop="66335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAA</genome_strand>
        <mrna_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTTAACACGAGTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239625" ref_strand="+" ref_description="SGN-E239625 [cLED-23-H16]">
      <seq>tatctctggttctggctctggttctggttattctcagcagccattacagcagaggaggttatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65599" stop="66609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65899" g_stop="66309" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E239625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65899" e_stop="66309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGAT</genome_strand>
        <mrna_strand>TATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709917" ref_strand="+" ref_description="SGN-E709917 [FA53CE12]">
      <seq>cgtatgggtgaaaaacagatcaaatgcgtggtgggagcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65658" stop="67080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65956" g_stop="66780" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E709917" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65956" e_stop="66780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAG</genome_strand>
        <mrna_strand>CGTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248390" ref_strand="+" ref_description="SGN-E248390 [cLEG-1-B5]">
      <seq>agcaatgtaaccgtcctgatttccctgaagaggaatttaagaaagcatttcatatgggcaaagctacgtttgattttatatgttctgaattagaatcagtagtgacaaaaaaggacacgatgttacgtatggcgatacctgttcgtcaacgtgtagctgtatgcatttggagattggctacaggagagccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65691" stop="66922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65991" g_stop="66622" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E248390" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65991" e_stop="66622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGT</genome_strand>
        <mrna_strand>AGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAATTAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251045" ref_strand="+" ref_description="SGN-E251045 [cLEG-17-A17]">
      <seq>ctgtatgcatttggagattggctacaggagagccactccggagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatgggcctgttcgatgacagatgatcaaatcttggaaaaatcgatactttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65847" stop="66875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66147" g_stop="66575" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E251045" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66147" e_stop="66575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCC-GAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATG</genome_strand>
        <mrna_strand>CTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGGCCTGTTCGATGACAGATGATCAAATCTTGGAAAAATCGATACTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377526" ref_strand="+" ref_description="SGN-E377526 [TUS-20-B7]">
      <seq>gccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacctcaagatttgcctgttggtcttggagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65878" stop="67124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66178" g_stop="66826" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E377526" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66178" e_stop="66826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGT</genome_strand>
        <mrna_strand>GCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACCTCAAGATTTGCCTGTTGGTCTTGGAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233288" ref_strand="+" ref_description="SGN-E233288 [cLED-6-F22]">
      <seq>gccactccgagaagtgtctaggcgatttgggttaggtatatctacttgtcataagctcgtgctcgaggtatgcacagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65878" stop="67046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66178" g_stop="66746" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E233288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66178" e_stop="66746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGA</genome_strand>
        <mrna_strand>GCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235903" ref_strand="+" ref_description="SGN-E235903 [cLED-16-M18]">
      <seq>acagctataagaggggtgttaatggcgaaattcatacaatggcctgatgaacttaagatggaggaaattaaacacgagtttgaaatcctttccgggatagaaaatgtaggtggatcaatgtacacgacacatgtaccaattatcgcgcctaaggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65951" stop="67025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66251" g_stop="66725" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E235903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66251" e_stop="66725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAG</genome_strand>
        <mrna_strand>ACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256132" ref_strand="+" ref_description="SGN-E256132 [cLEG-37-J8]">
      <seq>acgacacatgtaccaattatcgcgcctaaagaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgttgtacacttcacaatatctgtgagattagaggtgaagaattacgtcaagaattaaggttcgatttggttgatgatgaaatgatcccggaagttgttgtgagatcaatgaacgcgatgaaagtaagagatcagattgctcacaaactattacatcataatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66074" stop="67289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66374" g_stop="66989" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E256132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66374" e_stop="66989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACT</genome_strand>
        <mrna_strand>ACGACACATGTACCAATTATCGCGCCTAAAGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239746" ref_strand="+" ref_description="SGN-E239746 [cLED-33-C14]">
      <seq>aggaaagtgtcgcgagttacttcaacaaaaggcatactgagaggaatcagaagacatcttactccgttacagtacaaggggttgttgatccaaaggggattttcacagatgtttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66102" stop="67126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66402" g_stop="66826" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E239746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66402" e_stop="66826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGT</genome_strand>
        <mrna_strand>AGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236281" ref_strand="+" ref_description="SGN-E236281 [cLED-20-K21]">
      <seq>tttgtatagtttggcctggttcgatgacagaggatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgttgtacactctacaatatctgtgagattagaggtgaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66213" stop="67166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66513" g_stop="66866" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E236281" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66513" e_stop="66866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAAT</genome_strand>
        <mrna_strand>TTTGTATAGTTTGGCCTGGTTCGATGACAGAGGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTCTACAATATCTGTGAGATTAGAGGTGAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239561" ref_strand="+" ref_description="SGN-E239561 [cLED-23-O13]">
      <seq>ttgtataggatggcctggttcgatgacagatgatcaagtcttggaaaaatcgatactttatgaaagagcaaacagaggaaacttgaatggtacttacattgttgggagttcaggatttccattaacggattggattttagttccgtttactcatcagaatgttacatggacacaacatgcttttaatgagaaagtgaatgatgttcaaagagttgccaaagaagcgtttatgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgttgtacacttcacaatatctgtgagattagaggtgaagaattacgtcaagaattaaggttcgatttggttgatgatgaaatgatcccggaagttgttgtgagatcaatgaacgcgatgaaagtaagagatcagattgctcacaaactattacatcataatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66214" stop="67289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66989" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E239561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACT</genome_strand>
        <mrna_strand>TTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423594" ref_strand="+" ref_description="SGN-E423594 [STM-42-C10]">
      <seq>attttttttgctaaatttctttgataaagaattgagtccaattcgttttgtcctaaacaatatgcaatacttaaaatggaaaagcaaatcttctatgaagatttatagcaacttattctataacatgacttcaatgaaccatgtaaagaattacccccaaaatcaaacctaatattcaacctctaaaacatgtaaattaaatcttgaatttccatattcatcataggaaactagtccctgagtaattatgatgtaatagcttgtgagcaatctgatctcttactttcatagcattcattgatctcacaacaatttccggaaccatttcatcatcaaccaaatcgaacctcaagtcttgacgtaattcttcacctctcatttcacaaatattgtgaagtgtacaacaagccccaagaacaacaggcaaatcttgaagtttcacttctgttcttttctttaaacaactccatcttgctttcaatctcataaatgcttctttagcaactttttgaacatcattcactttctcattaaaagcatgttgtgtccaagtaacattctgatgagtaaatggaactaaaatccaatccgttaaaggaaatcctgaactcccaacaatgtaagtaccattcaagtttcctctgtttgctctttcgtaaagtatggatttttccaagacttgatcatctgtcattgaaccaggccatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="67519" stop="66219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67219" g_stop="66519" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E423594" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67219" e_stop="66519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTGGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCATAATGTCCTAAACAATATGAAATACTTGAAATGGAAAAGCAAATCTTCTATGAAGATCAATAATAACTTATTCTATAACATGACTCAAATAAACCATGTAAAAGAATTA-CCCC----T-AA------TATTCAAGCTCTAAAACATGTAAACTAAATCTTGAATTTCCATATTTCATCATAGAAAACTAGTCCCTGAGTGATTATGATGTAATAGTTTGTGAGCAATCTGATCTCTTACTTTCATCGCGTTCATTGATCTCACAACAACTTCCGGGATCATTTCATCATCAACCAAATCGAACCTTAATTCTTGACGTAATTCTTCACCTCTAATCTCACAGATATTGTGAAGTGTACAACAAGCTCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAACGCTTCTTTGGCAACTCTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCATGTAACATTCTGATGAGTAAACGGAACTAAAATCCAATCCGTTAATGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCATAAAGTATCGATTTTTCCAAGACTTGATCATCTGTCATCGAACCAGGCCATCCTA</genome_strand>
        <mrna_strand>ATTTTTTTTGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCGTTTTGTCCTAAACAATATGCAATACTTAAAATGGAAAAGCAAATCTTCTATGAAGATTTATAGCAACTTATTCTATAACATGACTTCAATGAACCATGT-AAAGAATTACCCCCAAAATCAAACCTAATATTCAACCTCTAAAACATGTAAATTAAATCTTGAATTTCCATA-TTCATCATAGGAAACTAGTCCCTGAGTAATTATGATGTAATAGCTTGTGAGCAATCTGATCTCTTACTTTCATAGCATTCATTGATCTCACAACAATTTCCGGAACCATTTCATCATCAACCAAATCGAACCTCAAGTCTTGACGTAATTCTTCACCTCTCATTTCACAAATATTGTGAAGTGTACAACAAGCCCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAATGCTTCTTTAGCAACTTTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCAAGTAACATTCTGATGAGTAAATGGAACTAAAATCCAATCCGTTAAAGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCGTAAAGTATGGATTTTTCCAAGACTTGATCATCTGTCATTGAACCAGGCCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378057" ref_strand="+" ref_description="SGN-E378057 [TUS-21-L8]">
      <seq>tgagattgaaagcaagatggagttgtttaaagaaaagaacagaagtgaaacttcaagatttgcctgttgttcttggagcttgttgtacacttcacaatatctgtgagattagaggtgaagaattacgtcaagaattaaggttcgatttggttgatgatgaaatgatcccggaagttgttgtgagatcaatgaacgcgatgaaagtaagagatcagattgctcacaaactattacatcataatcactcagggactagttttctatgatgaaatatggaaattcaagatttagtttacatgttttagagcttgaatattaggggtaattcttttacatggtttatttgagtcatgttatagaataagttattattgatcttcatagaagatttgcttttccatttcaagtatttcatattgtttaggacattatgaattggactcaattctttatcaaagaaatttagccaaaaaaattggaagtttctctttgttgccattgttctttttctccttttgatttcttcattgttgtgttctctaccaatacttgtctttttagacgatttactatcttanacaacctttcttctttctcaaagacaggggtaaggttgcgtatatcactctcttcaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="66444" stop="67683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66744" g_stop="67383" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E378057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66744" e_stop="67383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGGACTAGTTTTCTATGATGAAATATGGAAATTCAAGATTTAGTTTACATGTTTTAGAGCTTGAATATTAGGGGTAATTCTTTTACATGGTTTATTTGAGTCATGTTATAGAATAAGTTATTATTGATCTTCATAGAAGATTTGCTTTTCCATTTCAAGTATTTCATATTGTTTAGGACATTATGAATTGGACTCAATTCTTTATCAAAGAAATTTAGCCAAAAAAATTGGAAGTTTCTCTTTGTTGCCATTGTTCTTTTTCTCCTTTTGATTTCTTCATTGTTGTGTTCTCTACCAATACTTGTCTTTTTAGACGATTTACTATCTTAAACAACCTTTCTTCTTTCTCAAAGACAGGGGTAAGGTTGCGTATATCACTCTCTTCAATTACA</genome_strand>
        <mrna_strand>TGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGGACTAGTTTTCTATGATGAAATATGGAAATTCAAGATTTAGTTTACATGTTTTAGAGCTTGAATATTAGGGGTAATTCTTTTACATGGTTTATTTGAGTCATGTTATAGAATAAGTTATTATTGATCTTCATAGAAGATTTGCTTTTCCATTTCAAGTATTTCATATTGTTTAGGACATTATGAATTGGACTCAATTCTTTATCAAAGAAATTTAGCCAAAAAAATTGGAAGTTTCTCTTTGTTGCCATTGTTCTTTTTCTCCTTTTGATTTCTTCATTGTTGTGTTCTCTACCAATACTTGTCTTTTTAGACGATTTACTATCTTANACAACCTTTCTTCTTTCTCAAAGACAGGGGTAAGGTTGCGTATATCACTCTCTTCAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359840" ref_strand="+" ref_description="SGN-E359840 [cLPP-9-G22]">
      <seq>ttccctccgtccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttctattctttccaagatgctgactacttgtatctggtaatggaatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73963" stop="78163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74263" g_stop="74624" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="535" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="619" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77863" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="736" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E359840" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74263" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTG</genome_strand>
        <mrna_strand>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTCTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363265" ref_strand="+" ref_description="SGN-E363265 [cLPP-4-I9]">
      <seq>ctcgtgccgtccaattctatcttcatttctcctttttaacggattgtcgtattgaaaagaaaaataataatcgaatctctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaatcatggcgaacaacagagaggaggaagagcaacaacaacatataatggtagcgtttacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctaaaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73966" stop="76986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74263" g_stop="74624" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76686" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="388" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363265" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74263" e_stop="74624"/>
          <exon e_start="76659" e_stop="76686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAA</genome_strand>
        <mrna_strand>CTCGTGCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTGTCGTATTGAAAAGAAAAATAATAATCGAATCTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATCATGGCGAACAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTTACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAAAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330248" ref_strand="+" ref_description="SGN-E330248 [cTOD-4-K24]">
      <seq>ctccgtccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcatccttcttcttcttcattgtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttaaaaaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73967" stop="77110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74267" g_stop="74624" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76810" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="510" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E330248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74267" e_stop="74624"/>
          <exon e_start="76659" e_stop="76810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCA</genome_strand>
        <mrna_strand>CTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360153" ref_strand="+" ref_description="SGN-E360153 [cLPP-14-J16]">
      <seq>tccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagattttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73972" stop="77878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74272" g_stop="74624" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="527" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77578" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="585" r_length="58" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360153" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74272" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATG-AAAAAATTGAAG</genome_strand>
        <mrna_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT-TTTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363575" ref_strand="+" ref_description="SGN-E363575 [cLPP-3-M11]">
      <seq>tccaattctatcttcatttctcctttttaacggattttcgtatggaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73972" stop="77876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74272" g_stop="74624" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="526" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77576" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="581" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363575" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74272" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGA</genome_strand>
        <mrna_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATGGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363098" ref_strand="+" ref_description="SGN-E363098 [cLPP-19-G21]">
      <seq>tccaattctatcttcatttctccttgttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73972" stop="77131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74272" g_stop="74624" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76831" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="524" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363098" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74272" e_stop="74624"/>
          <exon e_start="76659" e_stop="76831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAG</genome_strand>
        <mrna_strand>TCCAATTCTATCTTCATTTCTCCTTGTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360370" ref_strand="+" ref_description="SGN-E360370 [cLPP-8-L11]">
      <seq>tccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73972" stop="76987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74272" g_stop="74624" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76687" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="380" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360370" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74272" e_stop="74624"/>
          <exon e_start="76659" e_stop="76687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAG</genome_strand>
        <mrna_strand>TCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360527" ref_strand="+" ref_description="SGN-E360527 [cLPP-8-H7]">
      <seq>ccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaagcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaagaacaaatgaaccttctaaaagaattggagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73973" stop="77042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74273" g_stop="74624" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76742" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="434" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360527" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74273" e_stop="74624"/>
          <exon e_start="76659" e_stop="76742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAA</genome_strand>
        <mrna_strand>CCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAAGAACAAATGAACCTTCTAAAAGAATTGGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363021" ref_strand="+" ref_description="SGN-E363021 [cLPP-2-H7]">
      <seq>caattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73974" stop="78094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74274" g_stop="74624" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="524" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="608" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77794" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="656" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363021" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74274" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGC</genome_strand>
        <mrna_strand>CAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362921" ref_strand="+" ref_description="SGN-E362921 [cLPP-2-E11]">
      <seq>caattctatcttcatttctcctttttaccggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagattttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaagctgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73974" stop="77890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74274" g_stop="74624" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="523" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77590" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="592" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E362921" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74274" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATG</genome_strand>
        <mrna_strand>CAATTCTATCTTCATTTCTCCTTTTTACCGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT---TAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAAGCTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360111" ref_strand="+" ref_description="SGN-E360111 [cLPP-14-G2]">
      <seq>tctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73978" stop="77875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74278" g_stop="74624" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="520" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77575" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="574" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360111" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74278" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTG</genome_strand>
        <mrna_strand>TCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363823" ref_strand="+" ref_description="SGN-E363823 [cLPP-3-H4]">
      <seq>tctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73978" stop="77129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74278" g_stop="74624" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76829" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="516" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363823" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74278" e_stop="74624"/>
          <exon e_start="76659" e_stop="76829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGG</genome_strand>
        <mrna_strand>TCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374153" ref_strand="+" ref_description="SGN-E374153 [TUS-33-N3]">
      <seq>tatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttctattctttccaagatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73980" stop="78135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74280" g_stop="74624" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="518" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="602" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77835" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="691" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E374153" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74280" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGA</genome_strand>
        <mrna_strand>TATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTCTATTCTTTCCAAGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363034" ref_strand="+" ref_description="SGN-E363034 [cLPP-2-L7]">
      <seq>tatcttcatttctcctttttaacggattttcgtattgaaaagaaaaagtggatgctattgaataattctaaatcttataaagagtggaaagagattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73980" stop="77912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74280" g_stop="74624" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="518" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="602" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="612" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E363034" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74280" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATG</genome_strand>
        <mrna_strand>TATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAAGTGGATGCTATTGAATAATTCTAAATCTTATAAAGAGTGGAAAGAGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329340" ref_strand="+" ref_description="SGN-E329340 [cTOD-2-H14]">
      <seq>ttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcatccttcttcttcttcattgtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttaaaaaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggacaaagtatctaaaaatatatatgcaatgaaaaaattgaagaaagctgaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73984" stop="77891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74624" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="516" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="586" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E329340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGC</genome_strand>
        <mrna_strand>TTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAAGCTGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362140" ref_strand="+" ref_description="SGN-E362140 [cLPP-11-B1]">
      <seq>tttctcctttttaacggattttcgttttgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73988" stop="76985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74288" g_stop="74624" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76685" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="362" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E362140" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74288" e_stop="74624"/>
          <exon e_start="76659" e_stop="76685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGA</genome_strand>
        <mrna_strand>TTTCTCCTTTTTAACGGATTTTCGTTTTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334321" ref_strand="+" ref_description="SGN-E334321 [cTOD-21-K24]">
      <seq>ttttcgtattgaaaagaaaaataataatcgaatttctcatccttcttcttcttcattgtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttaaaaaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggacaaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttttattctttccaagatgctgactacttgtatctggtaaatggatatctgcctggtggtgatatgatgacattgctgatcagggaggagacattaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74006" stop="78212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74306" g_stop="74624" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="494" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="578" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="744" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E334321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74306" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTG</genome_strand>
        <mrna_strand>TTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAAATGGATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333496" ref_strand="+" ref_description="SGN-E333496 [cTOD-20-P15]">
      <seq>aaaaataataatcgaatttctcatccttcttcttcttcattgtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttaaaaaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggacaaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttttattctttccaagatgctgactacttgtatctggtaatggaatatctgcctggtggtgatatgatgacattgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74022" stop="78192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74322" g_stop="74624" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="478" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="562" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77892" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="708" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E333496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74322" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGAT</genome_strand>
        <mrna_strand>AAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360699" ref_strand="+" ref_description="SGN-E360699 [cLPP-7-H14]">
      <seq>aaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacatcaacatataatggttgcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctataacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74022" stop="77129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74322" g_stop="74624" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76829" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="472" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360699" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74322" e_stop="74624"/>
          <exon e_start="76659" e_stop="76829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGG</genome_strand>
        <mrna_strand>AAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACATCAACATATAATGGTTGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTATAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360539" ref_strand="+" ref_description="SGN-E360539 [cLPP-8-L21]">
      <seq>cctcattcttcttcttattcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaaccgacgaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaatgcgttcactgctagaaaggaaattggaaggctctggtgttccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74041" stop="77052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74340" g_stop="74624" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76752" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="377" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360539" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74340" e_stop="74624"/>
          <exon e_start="76659" e_stop="76752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAG</genome_strand>
        <mrna_strand>CCTCATTCTTCTTCTTATTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACCGACGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTTCCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362194" ref_strand="+" ref_description="SGN-E362194 [cLPP-11-B12]">
      <seq>cgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatattcgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74071" stop="77130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74371" g_stop="74624" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76830" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="424" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E362194" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74371" e_stop="74624"/>
          <exon e_start="76659" e_stop="76830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGA</genome_strand>
        <mrna_strand>CGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATTCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362471" ref_strand="+" ref_description="SGN-E362471 [cLPP-1-J9]">
      <seq>tcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttctattctttccaagatgctgactacttgtatctggtaatggaatatctgcctggtggtgatatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74079" stop="78182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74379" g_stop="74624" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="419" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="503" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77882" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="639" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E362471" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74379" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGA</genome_strand>
        <mrna_strand>TCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTCTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331862" ref_strand="+" ref_description="SGN-E331862 [cTOD-7-N1]">
      <seq>tcgtcgccctgataaaaaggaagacgattgatcgaagatttttttaaaaaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggacaaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttttattctttccaagatgctgactacttgtatctggtaatggaatatctgcctggtggtgatatgatgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74083" stop="78187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74383" g_stop="74624" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="417" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="501" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77887" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="642" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E331862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74383" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTG</genome_strand>
        <mrna_strand>TCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360443" ref_strand="+" ref_description="SGN-E360443 [cLPP-8-I13]">
      <seq>gaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttctattctttccaagatgctgactacttgtatctggtaatggaatatctgcctggtggtgatatgatgacgttgctgatcagggaggagacattaactgagacagtcgcaagattttacattgctcaaagtgttttggccatagagtctattcataagcataactacattcacagggatataaaacctgacaatcttcttttggacaaaaatggtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="74262" stop="78442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74562" g_stop="74624" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="238" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="322" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77988" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="564" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77989" i_stop="78098" i_length="110">
            <donor d_prob="0.129" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78099" g_stop="78142" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="608" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360443" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74562" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77988"/>
          <exon e_start="78099" e_stop="78142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACCGGTAGGTATTAATCAGTATTTGGTAAAGAGTAATGGTATACCCTGGAGACTTCTATGTATGATTTGAAATGATCTTAATGATTTATGTCTTTTACGTAACGTTTTGTGCAGGGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</genome_strand>
        <mrna_strand>GAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTCTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACGTTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACAG..............................................................................................................GGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547103" ref_strand="+" ref_description="SGN-E547103 [TUS-70-M24]">
      <seq>gtctgattttggtctatgcaagccccttgactgttcgaatttatctcctataaatgaaaatgaagtgattgatggtgaggaaaaaggatctgctaacaagtggaatagctcccttgaacaaatgcagcattggcaaataaacaggagaaaattagcattttcaacagtgggcactcctgactatattgctcctgaggttttactgaagaaaggctatggagtggaatgtgattggtggtcacttggcgccatcatgtatgagatgctcgttggttatccccctttctactccgaagacccaataacaacatgtagaaagatagttcattggagaaatcacataaaatttccagaggaagcaagattaactcctgaagccaaagacctgatctgtaagttgctttgtgatgctgaaaatcgtcttggttgtcgaggagcagagcaaataaaggctcacccctggttcaaagacataaagtgggataaactttataacatggaggcagcatataagccagaagtcaatgatgctcttgacactcaaaatttcatgaagtttgatgaggcaaatcaagcaccagcaaaaaatagttcaggacccaatcgaaagaagcgtctgattcccgaagatttaagttttgttggctatacctacaagaattttgaggctgtgaagggattaagacattcttcaggtgactctgcagtggatatctcaggcaagtgttcaatcgatgacaatgaaatgcttgtcctcgctgctgcatcagcagatactgtaactctgtgatgagcatcccagtttctacacaaaactaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77850" stop="84035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78150" g_stop="78303" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78304" i_stop="79423" i_length="1120">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79424" g_stop="79503" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="234" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79504" i_stop="79691" i_length="188">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79692" g_stop="79776" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="319" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79777" i_stop="80104" i_length="328">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80236" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="451" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80237" i_stop="80309" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80310" g_stop="80423" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="565" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80864" g_stop="80908" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="610" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81001" g_stop="81085" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="695" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83606" g_stop="83735" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="825" r_length="130" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E547103" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78150" e_stop="78303"/>
          <exon e_start="79424" e_stop="79503"/>
          <exon e_start="79692" e_stop="79776"/>
          <exon e_start="80105" e_stop="80236"/>
          <exon e_start="80310" e_stop="80423"/>
          <exon e_start="80864" e_stop="80908"/>
          <exon e_start="81001" e_stop="81085"/>
          <exon e_start="83606" e_stop="83735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAGGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTAGTAAGTAGAACATTATTAAATATTAACAGAAACACAGCTTATCTCATTACTTATAAACTTAATCCAGAATCCTTATTTTGGTTGATTTTTCAAGGATCATAGATATGGAAAAGAAAAACTAAAAATTGGAAGAGAACTACTCCCTTCATTTCAATTTGTTTGTCTGGTTTTGATTTGACGCGAAACTTAAGAAAGCAAAAAAGACTTTTGAATCTTGTAACATTAAATTAAATATATATTGCATGAACCAAAATATCATTTAATCTTAGTCTTAAACATGTCACATATAAAGTTGAAACTACAGAGTTGCCAAAAAGAAAAGGAAAAATGCATTCTTTTCTGAAACGGACTAAAAAGGAAAGCAAGAAAAACAAATTGAAATGGAGGGAGTAATATCTAGTACCAGAACAATTTGTTTCGGGAGAGTAACATACTTATCTCCTTAGTGTTGGGACCTGGCGTATTGAATTGTCTGCTTTAGATAAGCTTATTCATATGGATCTAAAAAAATGCATAAATAATATTGCTTTTTTGATACGTAGCTCTAGCTGATACTTTACCGCAGAAATTTTAGCAAAGCAAGTACATGATTATGTTGAATTTAGCACTGAGTCATTGCTTTCCAAAAGTATGAAGTTTTGTTAAAACGAAAATCTTCACACAGCATAGACATTTGAAAAAACTGAAGTACTTAGATGAACTTTATTAAGAATGGGAGATAAATTGTAGGGTGGAATAACTAGTGTTGTGTAATACTCTTTATATTCTGAAGTAACAATTGTTGGTCCTGTAAAGACTAGACTACCTTTTCACCCAATAGCTCCCCCTGCCCAAAGCTGGTTTATAATGTCAATGTCATGCATGCCAAGTTTGTTACGAGTCTACTTCACTCATTTATCATGCAAAGGCTTAGTGAGCAAGTCAACAACTTCGTTTTCAGATACCTCTTATGCTTTTTGAATGACACATTGGAACTTTATCAAAATGTGACTGCCAACCAGTATGTACCTAGCTTCACATGAGTAATGGAAACGAACTAGAAATATCATTTACTATTCCAAGAAATGATATTTTGTTGATTAGTTATTGGAACCTGTAATATAACCTGTTGCTATGGCAGGCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTGGTTAGCTTTCTTATTCGTGATGAACATGGATTTTAATTGACTGATGTTTTAAAGTTTTGATTGCCTTACTTCCAAAGATTAAACATGACTTTCACTTATGGTTCTTTCTTTTAGGTATGATCACCTTGAATAGAGAAAGTAAAGTTAATAGACTTAATCCATTATCCTCTTTTCTTTGCTTCATTCAGGTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAGGTATAGTGGTCTACACAAGTGTGTGAAAATTCATTAAGCAGCATTAACAACAACAGCAACATCAACATATAGGTGGGGTTTGGGGAGGATAGAGTGTACGCATACATTACCTCTACCTCGTAGAGATAGAGAGGCACGACGAAATTTAAAACTTTAGGAAGCAAATCTACTTTCTCCTGTTCAACATTGATATTATTTATCCTTTTTGTTTAGTTAACAATCAACGTATCTATGCTTGTGCTACTGTTCCGTCTTATGACAGTCCATTCACGATACTTATGTGGCATGATTCAAATGCTATGTTTTGACACTTGTTCTGGTTCTATAGATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAGGTTTGTGTTACCATAATAGTCTTATTTTTGGATCAATTACAGATTCTTATGCTTTATTCATCAATATAATCAGGCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAGGTAAATTACAATTTATATCCTATCCCGTTTCTGTCTTCTTTTCCAAATTTTAGAGGATGTTTATGAGAAGTGATTATTCATCTTCACAATTTAATCGTGACACTATGTTTCGCTACTACATAAGCTACCTTAGTGGTATGTGTGATCAAGAGTTATCACTAAAGATGAGGCTACATCACACCCCTCAGGGTGCTGCTCTTCCCTAGACGGGATATTTTGTGCACCAGGCTGCCGTTTTACTAAAGATGAGCCTATGGTACCAATGAACAACGACTGCGATGACTTGATTTTAGTTTCTTTATCTTTATATTTTGTATTTTTCATTTAATACTTAAGCTTTGTTTTGGATGATCATTTTGATATTCATGTTTAACTGTTGTTACCAACAAAACTTAGTTGAGGATTCTTTCGGACTGATGTTCGATTGGAACTTGCTGCAGGCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAGGTGAGTTTTCGTTTGCTACAATGAGTAAAGAGTCCTATCAGAGCAATAACGCCATGCTTAAGTAGCTGTTTTCTGTTGTAATATTTTGGCAGAAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAGGTATGGTGACTTCCATATACTCTCAGACTAATAGTTGTGTCATCTTCTTTTGAAAGGGAGCTCGTGTTGAATGCTCTGTCATCTACGTTACTTCCTCCGTTTCAAAAAAGAATTTCCCTATTTTCTTTTTAGTTTGATTAAAAAAGAATGACCTCTTTCCTTTTTTGACAACACTTTAACTTTAACTTTCCACGCGGCATGTTTAAGACCACAAAATTAAAGGGCATTTTGATGCATTTGACGTAACTTTAATTTAGAACCACAAGATTAAAAAAAAAAACTTTTCTTAAACTCCGTTCTAAGTCAAACTAGGTCATTCTTTTTTAAACGGATGGAGTAATTCTTATGCATTCTGTGACATGTATAATGTATACTAGTTTCTGGACACGTTCGCACGTATGTCCAATACAAGTAGTTCATACAAACTAAATCATATTAAAAATATATTGTAATAAATAATAGAATAAAGTGAAAAAGTACAAGCTAAAATAGATGAATAGTTGGTTTATATTCAAATGATTTTTTTTGTTGAACAATATTAGATGATTAAATATTATTTGAAACTACAAAATTCAACAATTAAATTTATCTAGATAGGTAAAATGTATAATGAATTATATATATTTTCAGCAACATTTAATGTATTGATATATTTACATGATACTTTTTCAGAAGTAATGTTTTTGATGTGTATTCCATTCGTTGTTTTGATTACCGATTTCAACGATTAGAGTAATTTCATTCATCCGTTTACAATTATATAATTTAAAAAACATTAATAAACATATATCACTAAAATAATATATATGAATACCTATTCTTTTTCATTTATCCACTTCTTTTTTTTACCAACTTCACAAATTCTCAAAAAATTAAAGTTTCAAACAACTTCAAGCTAAGCAAAGAGTTAAAGCTAATGGTATCTCTAACACTTCTATATCAATACATCCAATTGATTTTAACTCATAAATATGAATATAAGAAACATTGATAATTTATAAAACTTAAAACTCATAAAATATTATATAAACGAGAATAATATATATTTTACGAACGCGTTCGTAAAAAATAACAAAGCTGCTTCCCCTAATGGAGAGGGTTGTACATATTCTTGATTTATGAATTCATTTATAAATAGATCATTGAGCATAATTTCAAGGAATAGATAAGATCATTCATTATCAATTAAATTAGGTAACTAAAGAAAATCAAAAGTTCAATTATTGGAGACGAAAAGACTTTTCCAAACAACAACTACGTATAACCATTGTTATGAGATGTATACATTGCAAGTACAAAAAAACTAAGAAAAAGAATGAACAAATTACACAAGAAAATATTTTGTTGAGTAAACATTATATTCTAATTAATTACTACATATAAGATAATATGCTATAGTAAGTATCGATAAATGAACAAATATAACAGCTAGAAGCTTCAATCAAACTAATAAATGTGAAAAGATTGTATTCTAATTAATATTGAGGAAATTTAATCTATAATAATTACTGGCAGATGAACCATCTAGTACTTATCCGGTTCAATGCATAAGATTATTAATAAATTTTATATTTTAAAATTATAGTTGTTAGGGCTTTTAATGTTATCTTTATATAATTAATTAAAATATTATTATTTAATTAAATTTATATTTAGTGTAGCAATAAAATGACAATCCAACTTTTCAATTTGAAGTTTCTCACTTATAATAATATATGACGATATGATAAGCACTTGAATGAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTCCCAAAGGTCTTTTCCGTGTACACTCCACGCTTTAAGACCCCACTTGTGCGATTATATTGGGTGTATTGTTGTGCATGTGTTAATGTACATTTTAATGCCTTGATCGAACTTAAGACATAAACGTATGCCATATATGACATGAATAAACGTTTAATCACTTGCAGCATTATTAGATTTCTGTGTACCAGCATGAATTTCTTGTGGATGATTGGTCTTGCACTCAAACCTTGACATTGTATGTACTTGCTGGAAACAGAAAACTTTGGTATCTTGCTGATTGTGTTATCTTTCATTATGATGTTCTGTATGTGCTGGTTTTCCGAATGGTTGTCTATAGGACATCTCGATGCACAAATCATCCCATGTTCGCAAGGTCAGGAAGGGTGTAAACAGCCTAACCTAATGCAAGCATTACTGACAACTTTACCGTTGCTCCAAGACTCCCTTAAACTGTTTCAAGACCCTACTTTGATTTCTCTCCTCTCGTAGCATGTATAATAAAAAGGGCCATTATATCCTTGTAGGTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAG-TTCTACAACAAAACTAGACAATC</genome_strand>
        <mrna_strand>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAAGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTG............................................................................................................................................................................................GTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAG........................................................................................................................................................................................................................................................................................................................................ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAG.........................................................................GCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG............................................................................................AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTGTGATGAGCATCCCAGTTTCTAC-ACAAAACTAAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360660" ref_strand="+" ref_description="SGN-E360660 [cLPP-7-H21]">
      <seq>tctgattttggtctatgcaagccccttgactgttcgaatttatctcctataaatgaaaatgaagtgattgatggtgaggaaaaaggatctgctaacaagtggaatagctcccttgaacaaatgcagcattggcaaataaacaggagaaaattagcattttcaacagtgggcactcctgactatattgctcctgaggttttactgaagaaaggctatggagtggaatgtgattggtggtcacttggcgccatcatgtatgagatgctcgttggttatccccctttctactccgaagacccaataacaacatgtagaaagatagttcattggagaaatcacataaaatttccagaggaagcaagattaactcctgaagccaaagacctgatctgtaagttgctttgtgatgctgaaaatcgtcttggttgtcgaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77851" stop="80523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78151" g_stop="78303" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78304" i_stop="79423" i_length="1120">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79424" g_stop="79503" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="233" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79504" i_stop="79691" i_length="188">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79692" g_stop="79776" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="318" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79777" i_stop="80104" i_length="328">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80223" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="437" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E360660" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78151" e_stop="78303"/>
          <exon e_start="79424" e_stop="79503"/>
          <exon e_start="79692" e_stop="79776"/>
          <exon e_start="80105" e_stop="80223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAGGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTAGTAAGTAGAACATTATTAAATATTAACAGAAACACAGCTTATCTCATTACTTATAAACTTAATCCAGAATCCTTATTTTGGTTGATTTTTCAAGGATCATAGATATGGAAAAGAAAAACTAAAAATTGGAAGAGAACTACTCCCTTCATTTCAATTTGTTTGTCTGGTTTTGATTTGACGCGAAACTTAAGAAAGCAAAAAAGACTTTTGAATCTTGTAACATTAAATTAAATATATATTGCATGAACCAAAATATCATTTAATCTTAGTCTTAAACATGTCACATATAAAGTTGAAACTACAGAGTTGCCAAAAAGAAAAGGAAAAATGCATTCTTTTCTGAAACGGACTAAAAAGGAAAGCAAGAAAAACAAATTGAAATGGAGGGAGTAATATCTAGTACCAGAACAATTTGTTTCGGGAGAGTAACATACTTATCTCCTTAGTGTTGGGACCTGGCGTATTGAATTGTCTGCTTTAGATAAGCTTATTCATATGGATCTAAAAAAATGCATAAATAATATTGCTTTTTTGATACGTAGCTCTAGCTGATACTTTACCGCAGAAATTTTAGCAAAGCAAGTACATGATTATGTTGAATTTAGCACTGAGTCATTGCTTTCCAAAAGTATGAAGTTTTGTTAAAACGAAAATCTTCACACAGCATAGACATTTGAAAAAACTGAAGTACTTAGATGAACTTTATTAAGAATGGGAGATAAATTGTAGGGTGGAATAACTAGTGTTGTGTAATACTCTTTATATTCTGAAGTAACAATTGTTGGTCCTGTAAAGACTAGACTACCTTTTCACCCAATAGCTCCCCCTGCCCAAAGCTGGTTTATAATGTCAATGTCATGCATGCCAAGTTTGTTACGAGTCTACTTCACTCATTTATCATGCAAAGGCTTAGTGAGCAAGTCAACAACTTCGTTTTCAGATACCTCTTATGCTTTTTGAATGACACATTGGAACTTTATCAAAATGTGACTGCCAACCAGTATGTACCTAGCTTCACATGAGTAATGGAAACGAACTAGAAATATCATTTACTATTCCAAGAAATGATATTTTGTTGATTAGTTATTGGAACCTGTAATATAACCTGTTGCTATGGCAGGCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTGGTTAGCTTTCTTATTCGTGATGAACATGGATTTTAATTGACTGATGTTTTAAAGTTTTGATTGCCTTACTTCCAAAGATTAAACATGACTTTCACTTATGGTTCTTTCTTTTAGGTATGATCACCTTGAATAGAGAAAGTAAAGTTAATAGACTTAATCCATTATCCTCTTTTCTTTGCTTCATTCAGGTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAGGTATAGTGGTCTACACAAGTGTGTGAAAATTCATTAAGCAGCATTAACAACAACAGCAACATCAACATATAGGTGGGGTTTGGGGAGGATAGAGTGTACGCATACATTACCTCTACCTCGTAGAGATAGAGAGGCACGACGAAATTTAAAACTTTAGGAAGCAAATCTACTTTCTCCTGTTCAACATTGATATTATTTATCCTTTTTGTTTAGTTAACAATCAACGTATCTATGCTTGTGCTACTGTTCCGTCTTATGACAGTCCATTCACGATACTTATGTGGCATGATTCAAATGCTATGTTTTGACACTTGTTCTGGTTCTATAGATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGC</genome_strand>
        <mrna_strand>TCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAAGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTG............................................................................................................................................................................................GTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAG........................................................................................................................................................................................................................................................................................................................................ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547102" ref_strand="+" ref_description="SGN-E547102 [TUS-70-M24](-)">
      <seq>atgtagaaagatagttcattggagaaatcacataaaattcccagaggaagcaagattaactcttgaagccaaagacctgatctgtaagttgctttgtgatgctgaaaatcgtcttggttgtcgaggagcagagcaaataaaggctcacccctggttcaaagacataaagtgggataaactttataacatggaggcagcatataagccagaagtcaatgatgctcttgacactcaaaatttcatgaagtttgatgaggcaaatcaagcaccagcaaaaaatagttcaggacccaatcgaaagaagcgtctgattcccgaagatttaagttttgttggctatacctacaagaattttgaggctgtgaagggattaagacattcttcaggtgactctgcagtggatatctcaggcaagtgttcaatcgatgacaatgaaatgcttgtcctcgctgctgcatcagcagatactgtaactctgtgatgagcatccaagttctacaacaaaactaaatgatcaacatgccatttctatggtttttcctggaggtaataacattgagtgttcaattcgagttccgaccattgctcctttgtccacaaaagcagattgccatttacaacactttaaaatgtaaaaagtgacaaatacaggatctctgggtaggtttcatgcagctatcactaggagttttttcttttttttctttttcaaacttgaaaattgtgtatacaaacattaagcatttaactgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="79801" stop="84271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80105" g_stop="80236" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="142" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80237" i_stop="80309" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80310" g_stop="80423" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="256" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80864" g_stop="80908" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="301" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81001" g_stop="81085" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="386" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83606" g_stop="83980" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="762" r_length="376" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E547102" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80105" e_stop="80236"/>
          <exon e_start="80310" e_stop="80423"/>
          <exon e_start="80864" e_stop="80908"/>
          <exon e_start="81001" e_stop="81085"/>
          <exon e_start="83606" e_stop="83980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAGGTTTGTGTTACCATAATAGTCTTATTTTTGGATCAATTACAGATTCTTATGCTTTATTCATCAATATAATCAGGCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAGGTAAATTACAATTTATATCCTATCCCGTTTCTGTCTTCTTTTCCAAATTTTAGAGGATGTTTATGAGAAGTGATTATTCATCTTCACAATTTAATCGTGACACTATGTTTCGCTACTACATAAGCTACCTTAGTGGTATGTGTGATCAAGAGTTATCACTAAAGATGAGGCTACATCACACCCCTCAGGGTGCTGCTCTTCCCTAGACGGGATATTTTGTGCACCAGGCTGCCGTTTTACTAAAGATGAGCCTATGGTACCAATGAACAACGACTGCGATGACTTGATTTTAGTTTCTTTATCTTTATATTTTGTATTTTTCATTTAATACTTAAGCTTTGTTTTGGATGATCATTTTGATATTCATGTTTAACTGTTGTTACCAACAAAACTTAGTTGAGGATTCTTTCGGACTGATGTTCGATTGGAACTTGCTGCAGGCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAGGTGAGTTTTCGTTTGCTACAATGAGTAAAGAGTCCTATCAGAGCAATAACGCCATGCTTAAGTAGCTGTTTTCTGTTGTAATATTTTGGCAGAAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAGGTATGGTGACTTCCATATACTCTCAGACTAATAGTTGTGTCATCTTCTTTTGAAAGGGAGCTCGTGTTGAATGCTCTGTCATCTACGTTACTTCCTCCGTTTCAAAAAAGAATTTCCCTATTTTCTTTTTAGTTTGATTAAAAAAGAATGACCTCTTTCCTTTTTTGACAACACTTTAACTTTAACTTTCCACGCGGCATGTTTAAGACCACAAAATTAAAGGGCATTTTGATGCATTTGACGTAACTTTAATTTAGAACCACAAGATTAAAAAAAAAAACTTTTCTTAAACTCCGTTCTAAGTCAAACTAGGTCATTCTTTTTTAAACGGATGGAGTAATTCTTATGCATTCTGTGACATGTATAATGTATACTAGTTTCTGGACACGTTCGCACGTATGTCCAATACAAGTAGTTCATACAAACTAAATCATATTAAAAATATATTGTAATAAATAATAGAATAAAGTGAAAAAGTACAAGCTAAAATAGATGAATAGTTGGTTTATATTCAAATGATTTTTTTTGTTGAACAATATTAGATGATTAAATATTATTTGAAACTACAAAATTCAACAATTAAATTTATCTAGATAGGTAAAATGTATAATGAATTATATATATTTTCAGCAACATTTAATGTATTGATATATTTACATGATACTTTTTCAGAAGTAATGTTTTTGATGTGTATTCCATTCGTTGTTTTGATTACCGATTTCAACGATTAGAGTAATTTCATTCATCCGTTTACAATTATATAATTTAAAAAACATTAATAAACATATATCACTAAAATAATATATATGAATACCTATTCTTTTTCATTTATCCACTTCTTTTTTTTACCAACTTCACAAATTCTCAAAAAATTAAAGTTTCAAACAACTTCAAGCTAAGCAAAGAGTTAAAGCTAATGGTATCTCTAACACTTCTATATCAATACATCCAATTGATTTTAACTCATAAATATGAATATAAGAAACATTGATAATTTATAAAACTTAAAACTCATAAAATATTATATAAACGAGAATAATATATATTTTACGAACGCGTTCGTAAAAAATAACAAAGCTGCTTCCCCTAATGGAGAGGGTTGTACATATTCTTGATTTATGAATTCATTTATAAATAGATCATTGAGCATAATTTCAAGGAATAGATAAGATCATTCATTATCAATTAAATTAGGTAACTAAAGAAAATCAAAAGTTCAATTATTGGAGACGAAAAGACTTTTCCAAACAACAACTACGTATAACCATTGTTATGAGATGTATACATTGCAAGTACAAAAAAACTAAGAAAAAGAATGAACAAATTACACAAGAAAATATTTTGTTGAGTAAACATTATATTCTAATTAATTACTACATATAAGATAATATGCTATAGTAAGTATCGATAAATGAACAAATATAACAGCTAGAAGCTTCAATCAAACTAATAAATGTGAAAAGATTGTATTCTAATTAATATTGAGGAAATTTAATCTATAATAATTACTGGCAGATGAACCATCTAGTACTTATCCGGTTCAATGCATAAGATTATTAATAAATTTTATATTTTAAAATTATAGTTGTTAGGGCTTTTAATGTTATCTTTATATAATTAATTAAAATATTATTATTTAATTAAATTTATATTTAGTGTAGCAATAAAATGACAATCCAACTTTTCAATTTGAAGTTTCTCACTTATAATAATATATGACGATATGATAAGCACTTGAATGAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTCCCAAAGGTCTTTTCCGTGTACACTCCACGCTTTAAGACCCCACTTGTGCGATTATATTGGGTGTATTGTTGTGCATGTGTTAATGTACATTTTAATGCCTTGATCGAACTTAAGACATAAACGTATGCCATATATGACATGAATAAACGTTTAATCACTTGCAGCATTATTAGATTTCTGTGTACCAGCATGAATTTCTTGTGGATGATTGGTCTTGCACTCAAACCTTGACATTGTATGTACTTGCTGGAAACAGAAAACTTTGGTATCTTGCTGATTGTGTTATCTTTCATTATGATGTTCTGTATGTGCTGGTTTTCCGAATGGTTGTCTATAGGACATCTCGATGCACAAATCATCCCATGTTCGCAAGGTCAGGAAGGGTGTAAACAGCCTAACCTAATGCAAGCATTACTGACAACTTTACCGTTGCTCCAAGACTCCCTTAAACTGTTTCAAGACCCTACTTTGATTTCTCTCCTCTCGTAGCATGTATAATAAAAAGGGCCATTATATCCTTGTAGGTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAGTTCTACAACAAAACTAGACAATCAACATGCCATTTTTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTT-TCTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTACCCTTT</genome_strand>
        <mrna_strand>ATAGTTCATTGGAGAAATCACATAAAATTCCCAGAGGAAGCAAGATTAACTCTTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAG.........................................................................GCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG............................................................................................AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTGTGATGAGCATCCAAGTTCTACAACAAAACTAAATGATCAACATGCCATTTCTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTCTTTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374152" ref_strand="+" ref_description="SGN-E374152 [TUS-33-N3](-)">
      <seq>cagcatataagccagaagtcaatgatgctcttgacactcaaaatttcatgaagtttgatgaggcaaatcaagcaccagcaaaaaatagttcaggacccaatcgaaagaagcgtctgattcccgaagatttaagttttgttggctatacctacaagaattttgaggctgtgaagggattaagacattcttcaggtgactctgcagtggatatctcaggcaagtgttcaatcgatgacaatgaaatgcttgtcctcgctgctgcatcagcagatactgtaactctgtgatgagcatccaagttctacaacaaaactaaatgatcaacatgccatttctatggtttttcctggaggtaataacattgagtgttcaattcgagttccgaccattgctcctttgtccacaaaagcagattgccatttacaacactttaaaatgtaaaaagtgacaaatacaggatctctgggtaggtttcatgcagctatcactaggagttttttctttttttctttttcaaacttgaaaattgtgtatacaaacattaagcatttaacttgactgcccttttaggaagagctaagaatgacttaaaatcatatctgtctagaacccttttgagttcttactcccagattttgtacattcacacagctgtaccaagaaaatggggaaatcaaatagtatgctttcttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="80062" stop="84409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80362" g_stop="80423" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80864" g_stop="80908" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="107" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81001" g_stop="81085" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="192" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83606" g_stop="84118" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="706" r_length="514" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E374152" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80362" e_stop="80423"/>
          <exon e_start="80864" e_stop="80908"/>
          <exon e_start="81001" e_stop="81085"/>
          <exon e_start="83606" e_stop="84118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAGGTAAATTACAATTTATATCCTATCCCGTTTCTGTCTTCTTTTCCAAATTTTAGAGGATGTTTATGAGAAGTGATTATTCATCTTCACAATTTAATCGTGACACTATGTTTCGCTACTACATAAGCTACCTTAGTGGTATGTGTGATCAAGAGTTATCACTAAAGATGAGGCTACATCACACCCCTCAGGGTGCTGCTCTTCCCTAGACGGGATATTTTGTGCACCAGGCTGCCGTTTTACTAAAGATGAGCCTATGGTACCAATGAACAACGACTGCGATGACTTGATTTTAGTTTCTTTATCTTTATATTTTGTATTTTTCATTTAATACTTAAGCTTTGTTTTGGATGATCATTTTGATATTCATGTTTAACTGTTGTTACCAACAAAACTTAGTTGAGGATTCTTTCGGACTGATGTTCGATTGGAACTTGCTGCAGGCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAGGTGAGTTTTCGTTTGCTACAATGAGTAAAGAGTCCTATCAGAGCAATAACGCCATGCTTAAGTAGCTGTTTTCTGTTGTAATATTTTGGCAGAAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAGGTATGGTGACTTCCATATACTCTCAGACTAATAGTTGTGTCATCTTCTTTTGAAAGGGAGCTCGTGTTGAATGCTCTGTCATCTACGTTACTTCCTCCGTTTCAAAAAAGAATTTCCCTATTTTCTTTTTAGTTTGATTAAAAAAGAATGACCTCTTTCCTTTTTTGACAACACTTTAACTTTAACTTTCCACGCGGCATGTTTAAGACCACAAAATTAAAGGGCATTTTGATGCATTTGACGTAACTTTAATTTAGAACCACAAGATTAAAAAAAAAAACTTTTCTTAAACTCCGTTCTAAGTCAAACTAGGTCATTCTTTTTTAAACGGATGGAGTAATTCTTATGCATTCTGTGACATGTATAATGTATACTAGTTTCTGGACACGTTCGCACGTATGTCCAATACAAGTAGTTCATACAAACTAAATCATATTAAAAATATATTGTAATAAATAATAGAATAAAGTGAAAAAGTACAAGCTAAAATAGATGAATAGTTGGTTTATATTCAAATGATTTTTTTTGTTGAACAATATTAGATGATTAAATATTATTTGAAACTACAAAATTCAACAATTAAATTTATCTAGATAGGTAAAATGTATAATGAATTATATATATTTTCAGCAACATTTAATGTATTGATATATTTACATGATACTTTTTCAGAAGTAATGTTTTTGATGTGTATTCCATTCGTTGTTTTGATTACCGATTTCAACGATTAGAGTAATTTCATTCATCCGTTTACAATTATATAATTTAAAAAACATTAATAAACATATATCACTAAAATAATATATATGAATACCTATTCTTTTTCATTTATCCACTTCTTTTTTTTACCAACTTCACAAATTCTCAAAAAATTAAAGTTTCAAACAACTTCAAGCTAAGCAAAGAGTTAAAGCTAATGGTATCTCTAACACTTCTATATCAATACATCCAATTGATTTTAACTCATAAATATGAATATAAGAAACATTGATAATTTATAAAACTTAAAACTCATAAAATATTATATAAACGAGAATAATATATATTTTACGAACGCGTTCGTAAAAAATAACAAAGCTGCTTCCCCTAATGGAGAGGGTTGTACATATTCTTGATTTATGAATTCATTTATAAATAGATCATTGAGCATAATTTCAAGGAATAGATAAGATCATTCATTATCAATTAAATTAGGTAACTAAAGAAAATCAAAAGTTCAATTATTGGAGACGAAAAGACTTTTCCAAACAACAACTACGTATAACCATTGTTATGAGATGTATACATTGCAAGTACAAAAAAACTAAGAAAAAGAATGAACAAATTACACAAGAAAATATTTTGTTGAGTAAACATTATATTCTAATTAATTACTACATATAAGATAATATGCTATAGTAAGTATCGATAAATGAACAAATATAACAGCTAGAAGCTTCAATCAAACTAATAAATGTGAAAAGATTGTATTCTAATTAATATTGAGGAAATTTAATCTATAATAATTACTGGCAGATGAACCATCTAGTACTTATCCGGTTCAATGCATAAGATTATTAATAAATTTTATATTTTAAAATTATAGTTGTTAGGGCTTTTAATGTTATCTTTATATAATTAATTAAAATATTATTATTTAATTAAATTTATATTTAGTGTAGCAATAAAATGACAATCCAACTTTTCAATTTGAAGTTTCTCACTTATAATAATATATGACGATATGATAAGCACTTGAATGAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTCCCAAAGGTCTTTTCCGTGTACACTCCACGCTTTAAGACCCCACTTGTGCGATTATATTGGGTGTATTGTTGTGCATGTGTTAATGTACATTTTAATGCCTTGATCGAACTTAAGACATAAACGTATGCCATATATGACATGAATAAACGTTTAATCACTTGCAGCATTATTAGATTTCTGTGTACCAGCATGAATTTCTTGTGGATGATTGGTCTTGCACTCAAACCTTGACATTGTATGTACTTGCTGGAAACAGAAAACTTTGGTATCTTGCTGATTGTGTTATCTTTCATTATGATGTTCTGTATGTGCTGGTTTTCCGAATGGTTGTCTATAGGACATCTCGATGCACAAATCATCCCATGTTCGCAAGGTCAGGAAGGGTGTAAACAGCCTAACCTAATGCAAGCATTACTGACAACTTTACCGTTGCTCCAAGACTCCCTTAAACTGTTTCAAGACCCTACTTTGATTTCTCTCCTCTCGTAGCATGTATAATAAAAAGGGCCATTATATCCTTGTAGGTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAGTTCTACAACAAAACTAGACAATCAACATGCCATTTTTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTTCTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTACCCTTTTAGGAAGAGCTAAGAATGACTT-AAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAATCAGTTTCT</genome_strand>
        <mrna_strand>CAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG............................................................................................AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTGTGATGAGCATCCAAGTTCTACAACAAAACTAAATGATCAACATGCCATTTCTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTCTTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTGCCCTTTTAGGAAGAGCTAAGAATGACTTAAAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614321" ref_strand="+" ref_description="SGN-E614321 [64106]">
      <seq>caccctttcatcaccatgtacgatgaccaggatatcgatcttggattttacttcacttccgcaggacctccattggcaacactcactgagctataattggttttctacaatgtcttgcaactgatggaattttggtcaattagcttttccagtcgcaacgttccaaaaattagaagccttttaagaaggcattgagaatcaaaatgaagcagatggagccattgttgtacttttcaagcctccggtaggtagcgttgggagtgtaactgtgacattttctactatgtatgtgattcaaatgggaacaactccagatatccttttgatatgacttatttttgacattaatccttggtggtgcaagtgtttttggtttacaatttgacttctaccttttagcacatgaagttgtttattgtcagtgttgaactgaatgtaaaattattaagctcccatttctcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattccgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86482" stop="54640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86182" g_stop="86084" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.776" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84781" g_stop="84411" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="472" r_length="373" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84410" i_stop="83932" i_length="479">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83931" g_stop="83899" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="505" r_length="33" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E614321" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86182" e_stop="86084"/>
          <exon e_start="84781" e_stop="84411"/>
          <exon e_start="83931" e_stop="83899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAA-TAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAA-AAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAAGAAAAAAACTCCTAGTG</genome_strand>
        <mrna_strand>CACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATTTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTCACTGAGCTATAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTTGGTCAATTAGCTTTTCCAGTCGCAACGTTCCAAAAATTAGAAGCCTTTTAAGAAGGCATTGAGAATCAAAATGAAGCAGATGGAGCCATTGTTGTACTTTTCAAGCCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTATTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAATTATTAAGCTCCCATTTCTCCTAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAATTCCGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324436" ref_strand="-" ref_description="SGN-E324436 [cTOC-6-I11]">
      <seq>caaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggttttctacaatgtcttgcaactgatggaatttcggtcaatagcttttccagtcgcaacgttgcaaaaattagaagctttttaaaaggcattgagaatcaaaatgaagcagatgaagccattattgtacttttcaagtctccggtaggtagcgttgggagtgtaactgtgacattttctactatgtatgtgattcaaatgggaacaactccagatatccttttgatatgacttacttttgacattaatccttggtggtgcaagtgtttttggtttacaatttgacttctaccttttagcacatgaagttgtttattgtcagtgttgaactgaatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86488" stop="54647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86288" g_stop="86275" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="116" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84781" g_stop="84448" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="450" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84447" i_stop="83929" i_length="519">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83928" g_stop="83910" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="469" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E324436" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324436" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86288" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84448"/>
          <exon e_start="83928" e_stop="83910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAAGAAAAA</genome_strand>
        <mrna_strand>CAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCTTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544816" ref_strand="+" ref_description="SGN-E544816 [TUS-67-F13](-)">
      <seq>cttttaagatcccatttctccttatgagatcattttagagacctatcgattcatcatggatttatcagaaacaacctctcttacccacaaagctaagggtaaggtctatgtaaatcctaccctccttagattcgacatgtgggattacaccacttggtatgccgttgttcctgtaatggttatcgttctactataccccatcaatataaatgtaagtcacatagatatagctaatcctgtatggatccagccttcataagctggaagcctccattataattcagctcgctcatttgacacctccggctgctggaaaaagatacagaaactgatttagaagaaagcatactatttgatttccccattttcttggtgacagctgtgtgaacgtacaaaatctgggagtaagaactcaaaagggttccagacagatatgatttaagtcattcttagctcttcctaaaagggtagtcaagttaaatgcttaatgtttgtatacacaagttcaagttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84741" stop="83616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84441" g_stop="83916" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E544816" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84441" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGT-ACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAA</genome_strand>
        <mrna_strand>CTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCGATTCATCATGGATTTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTCTACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGATCCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCCGGCTGCTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTGACAGCTGTGTGAACGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCCAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAA-GTTCAAG-TTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355322" ref_strand="+" ref_description="SGN-E355322 [cTOS-18-I18]">
      <seq>tccagaagcaccagaaggacagactgtcggcaaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggttttctacaatgtcttgcaactgatggaatttcggtcaatagcttttccagtcgcaacgttgcaaaaattagaagccttttaaaaggcattgagaatcaaaatgaagcagatgaagccattattgtacttttcaagtctccggtaggtagcgttgggagtgtaactgtgacattttctactatgtatgtgattcaaatgggaacaactccagatatccttttgatatgacttacttttgacattaatccttggtggtgcaagtgtttttggtttacaatttgacttctaccttttagcacatgaagttgtttattgtcagtgttgaactgaatgtaaaacttttaagatcccatttctccttatgagatcattttagagaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86618" stop="84093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86318" g_stop="86275" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="146" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84781" g_stop="84388" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="540" r_length="394" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E355322" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86318" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCAT</genome_strand>
        <mrna_strand>TCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744971" ref_strand="+" ref_description="SGN-E744971 [GI|9843770]">
      <seq>gcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttgctcgagtgtgcaacaggtcatttcccatataaaccacccgagggagatgaaggatgggtcaatgtctatgaacttatggaaaccatagttgaccaaccagaaccttgtgcacctcctgaccaattttctccacaattctgctcattcatatctgcatgtgtccagaagcaccagaaggacagactgtcggcaaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggtttctacaatgtcttgcaactgatggaatttcggtcaatagcttttccagtcgcaacgttgcaaaaattagaagccttttaaaaggcattgagaatcaaaatgaagcagatgaagccattattgtacttttcaagtctccggtaggtagcgttgggagtgtaactgtgacattttctactatgtatgtgattcaaatgggaacaactccagatatccttttgatatgacttacttttgacattaatccttggtggtgcaagtgtttttggtttacaatttgacttctaccttttagcacatgaagttgtttattgtcagtgttgaactgaatgtaaaacttttaagatcccatttctccttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90449" stop="84116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="89897" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="338" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="698" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="881" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86654" g_stop="86431" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="1105" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86320" g_stop="86275" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1151" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1152" r_stop="1253" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84781" g_stop="84416" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1618" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E744971" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1619</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86431"/>
          <exon e_start="86320" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGGTAAGCGCTATAGTTATGTACCATCTGAAACTTCTAATCTAATTGTCCTATGAGTGTCTGGTAGATGTGTTTTCTAGTTCGGAAGCTCACTACACAATAACTTGTTTCAGTGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATG</genome_strand>
        <mrna_strand>GCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG..............................................................................................................TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246637" ref_strand="+" ref_description="SGN-E246637 [cLEF-45-A15]">
      <seq>tcgtgccgctcgtgccgattcggcacgaggttttctttacttaatttgcgtgccaagtcaaaactagacaaacaaattgaaatagagggagcattacaatctgcctatgctaaaaacctccaagttgctgctgatgttctgttgtttgctatagccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttgctcgagtgtgcaacaggtcatttcccatataaaccacccgagggagatgaaggatgggtcaatgtctatgaacttatggaaaccatagttgaccaaccagaaccttgtgcacctcctgaccaattttctccacaattctgctcattcatatctgcatgtgtccagaagcaccagaaggacagactgtcggcaaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggttttctacaatgtcttgcaactgatggaatttcggtcaatagcttttccagtcgcaacgttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87081" stop="84414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86778" g_stop="86431" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="378" r_length="348" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86320" g_stop="86275" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="424" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84781" g_stop="84714" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="594" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E246637" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86778" e_stop="86431"/>
          <exon e_start="86320" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGGTAAGCGCTATAGTTATGTACCATCTGAAACTTCTAATCTAATTGTCCTATGAGTGTCTGGTAGATGTGTTTTCTAGTTCGGAAGCTCACTACACAATAACTTGTTTCAGTGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAA</genome_strand>
        <mrna_strand>TTTTCTTTACTTAATTTGCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG..............................................................................................................TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608332" ref_strand="+" ref_description="SGN-E608332 [24317]">
      <seq>ctgaaaaaggtcaaaacaatacctgaacgatatcttgctgttatctgcaagcaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcatagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactggcaagcacatctggactggctaatacccttgtcggaacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttactcgagtgtgcaacaggtcatttcccatatacaccacccgagggagatgatggctgggtcaacgtctatgaacttatggaaaccattgttgaccaaccagaaccttgtgcacctcctgaccaattttctccacaattctgctcattcatatctgcatgtgtccagaagcatcagaaggacagactgtcagcaaatgaactcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataattggttttctacaatgtcttgcaactgatggaattttggtcaattagcttttccagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87686" stop="84428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87386" g_stop="87333" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="0.96"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="237" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86654" g_stop="86431" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="461" r_length="224" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86320" g_stop="86275" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="507" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="0.93"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="609" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.776" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84781" g_stop="84727" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="665" r_length="56" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E608332" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87386" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86431"/>
          <exon e_start="86320" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGGTAAGCGCTATAGTTATGTACCATCTGAAACTTCTAATCTAATTGTCCTATGAGTGTCTGGTAGATGTGTTTTCTAGTTCGGAAGCTCACTACACAATAACTTGTTTCAGTGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAA-TAGCTTTTCCAGTCG</genome_strand>
        <mrna_strand>CTGAAAAAGGTCAAAACAATACCTGAACGATATCTTGCTGTTATCTGCAAGCAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCATAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTGGCAAGCACATCTGGACTGGCTAATACCCTTGTCGGAACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTACTCGAGTGTGCAACAGGTCATTTCCCATATACACCACCCGAGGGAGATGATGGCTGGGTCAACGTCTATGAACTTATGGAAACCATTGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG..............................................................................................................TGTCCAGAAGCATCAGAAGGACAGACTGTCAGCAAATGAACTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTTGGTCAATTAGCTTTTCCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746696" ref_strand="+" ref_description="SGN-E746696 [GI|51471925]">
      <seq>cacgaggagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttgctcgagtgtgcaacaggtcatttcccatataatccccccgagggagatgaaggatgggtcaatgtctatgaacttatggaaaccatagttgaccaaccagaaccttgtgcacctcctgaccaattttctccacaattctgctcattcatatctgcatgtgtccagaagcaccagaaggacagactgtcggcaaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggttttctacaatgtcttgcaactgatggaatttcggtcaatagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90457" stop="84434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="89897" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="346" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="481" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="706" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="889" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86654" g_stop="86431" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="1113" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86320" g_stop="86275" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1114" r_stop="1159" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1261" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84781" g_stop="84734" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1309" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E746696" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86431"/>
          <exon e_start="86320" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGGTAAGCGCTATAGTTATGTACCATCTGAAACTTCTAATCTAATTGTCCTATGAGTGTCTGGTAGATGTGTTTTCTAGTTCGGAAGCTCACTACACAATAACTTGTTTCAGTGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTT</genome_strand>
        <mrna_strand>CACGAGGAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAATCCCCCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG..............................................................................................................TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319290" ref_strand="+" ref_description="SGN-E319290 [cTOB-16-O10]">
      <seq>ttattcagatgaatattgatgagtctatgcgcaaacagtattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttgctcgagtgtgcaacaggtcatttcccatataaaccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87856" stop="86251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87556" g_stop="87333" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="408" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86654" g_stop="86551" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="512" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E319290" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87556" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCAGATGAATATTGATGAGTCTATGCGCAAACA-TATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACC</genome_strand>
        <mrna_strand>TTATTCAGATGAATATTGATGAGTCTATGCGCAAACAGTATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348793" ref_strand="+" ref_description="SGN-E348793 [cTOF-29-K18]">
      <seq>tcaaaaaatacctgaaccgatttcttgctgttatctgcaaacaggttctcaaatgcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87676" stop="86289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87376" g_stop="87333" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="0.93"/>
            <acceptor a_prob="0.322" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="227" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86654" g_stop="86589" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="293" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E348793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87376" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAATACCTGAA-CGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTG</genome_strand>
        <mrna_strand>TCAAAA-AATACCTGAACCGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAATGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707752" ref_strand="+" ref_description="SGN-E707752 [FA33DE08]">
      <seq>catctttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90426" stop="86768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90126" g_stop="89897" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="315" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="450" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="675" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="858" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E707752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90126" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT</genome_strand>
        <mrna_strand>CATCTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450084" ref_strand="+" ref_description="SGN-E450084 [cSTS-8-G22]">
      <seq>gcaactttcactttgggtgttcaagatttcaataaaaaagtgatttttaagaagaattcaagaaccccagttgcccaagaagcaatttttactgtgatttaacaaaatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagttaaagttattggaaagggaaatggtggtattgtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgacgagtccatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttaattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatatcttgctgttatctgcaagcaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcatagaggtgatgtcaaaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90427" stop="86847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90073" g_stop="89897" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="191" r_length="177" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="276" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="411" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="636" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="0.96"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87147" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="740" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E450084" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90073" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCAC</genome_strand>
        <mrna_strand>GGGTGTTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAAATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTTAAAGTTATTGGAAAGGGAAATGGTGGTATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTAATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATATCTTGCTGTTATCTGCAAGCAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCATAGAGGTGATGTCAAAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462650" ref_strand="+" ref_description="SGN-E462650 [cPRO-12-E24]">
      <seq>gcaactttcactttgggtgttcaagatttcaataaaaaagtgatttttaagaagaatccaagaaccccagttgcccaagaagcaatttttactgtgatttaacaagatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagttaaagttattggaaagggaaatggtggtattgtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgacgagtccatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgttatatgctatcagtcgttcttcgacaatggtgctatatccttaattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatatcttgctgttatctgcaagcaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaattttgctatcaatcatagaggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90427" stop="86857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90073" g_stop="89897" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="191" r_length="177" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="276" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="411" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="636" r_length="225" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="0.96"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87157" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="730" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E462650" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90073" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATG</genome_strand>
        <mrna_strand>GGGTGTTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATCCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAGATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTTAAAGTTATTGGAAAGGGAAATGGTGGTATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTTATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTAATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATATCTTGCTGTTATCTGCAAGCAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTTGCTATCAATCATAGAGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558731" ref_strand="+" ref_description="SGN-E558731 [18117]">
      <seq>ctgaaagcaactttcactttgggtggtcaagatttcaataaaaaagtgatttttaagaagaattcaagaaccccagttgcccaagaagcaatttttactgtgatttaacaaaatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagttaaagttattggaaagggaaatggtggtattgtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgacgagtccatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttaattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatatcttgctgttatctgcaagcaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacaggggattttgaaaccttcggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90433" stop="86882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90096" g_stop="89897" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="282" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="417" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="642" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="0.96"/>
            <acceptor a_prob="0.322" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87181" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="714" r_length="72" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E558731" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90096" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACA-GGGA-TTTGAAACCTTCGAATT</genome_strand>
        <mrna_strand>CTGAAAGCAACTTTCACTTT--G-GGTGGTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAAATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTTAAAGTTATTGGAAAGGGAAATGGTGGTATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTAATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATATCTTGCTGTTATCTGCAAGCAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGGATTTTGAAACCTTCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707606" ref_strand="+" ref_description="SGN-E707606 [FA33BH09]">
      <seq>caatataggcatataggagtgaacttttaactagaatacaaaaaactcagttgcctggaagcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattaattcccggggatttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90567" stop="86890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90268" g_stop="89897" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="457" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="592" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="817" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87190" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="879" r_length="62" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E707606" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90268" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATT-ATTCACAGGGATTTGAAAC</genome_strand>
        <mrna_strand>CAATATAGGCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTAATTCCCGGGGATTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558107" ref_strand="+" ref_description="SGN-E558107 [17010]">
      <seq>tttctatataagagtgaactttaagaagaattacaaaaccccatttggctgaaagcaactttcactttgggtgttcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccccagttgcccaagaagcaatttttactgtgatttaacaaaatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctggatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttaactgattttgaagcagttaaagttattggaaagggaaatggtggtattgtgcggctggttcagcataaatggacagggcagtttttcgctctcaagggtattcagatgaatattgacgagtccatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcaatcgttcttcgacaatggtgctatatccttaattttggagtatatggatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90482" stop="87104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90182" g_stop="90119" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90118" i_stop="90069" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90068" g_stop="89897" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="247" r_length="184" r_score="0.826"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="332" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="467" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87557" g_stop="87404" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="621" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E558107" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90182" e_stop="90119"/>
          <exon e_start="90068" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAA----------TTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAAC-CCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCT-GATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTG</genome_strand>
        <mrna_strand>TTTCTATATAAGAGTGAACTTTAAGAAGAATTA-CAAAACCCCATTTGGCTGAAAGCAACTTTC..................................................ACTTTGGGTGTTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAAATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAACTGATTTTGAAGCAGTTAAAGTTATTGGAAAGGGAAATGGTGGTATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAGTTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAATCGTTCTTCGACAATGGTGCTATATCCTTAATTTTGGAGTATATGGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409769" ref_strand="+" ref_description="SGN-E409769 [PPI-15-C13]">
      <seq>gttgcctggaagcaatttcacaagatttctatataagagtgaactttaagaagaattaccaaaaccccatttgcctgaaagcaactttcactttgggtgttcaagatttcaataaaaaagtgatttttaagaagaattcaagaaccccagttgcccaagaagcaatttttactgtgatttaacaaaatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagttaaagttattggaaagggaaatggtggtattgtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgacgagtccatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttaattttgagtatatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90519" stop="87108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90183" g_stop="90119" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="89" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90118" i_stop="90069" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90068" g_stop="89897" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="271" r_length="182" r_score="0.849"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="356" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="491" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87557" g_stop="87408" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="640" r_length="149" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E409769" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90183" e_stop="90119"/>
          <exon e_start="90068" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAA----------TTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGAT</genome_strand>
        <mrna_strand>ATTTCTATATAAGAGTGAACTTTAAGAAGAATTACCAAAACCCCATTTGCCTGAAAGCAACTTTC..................................................ACTTTGGGTGTTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAAATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTTAAAGTTATTGGAAAGGGAAATGGTGGTATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTAATTTT-GAGTATATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316877" ref_strand="+" ref_description="SGN-E316877 [cTOA-27-G6]">
      <seq>tctttgatctttcaagatttctataaaagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90499" stop="87108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90199" g_stop="89897" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="388" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="523" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87412" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="669" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E316877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90199" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATAT</genome_strand>
        <mrna_strand>TCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314088" ref_strand="+" ref_description="SGN-E314088 [cTOA-19-K22]">
      <seq>ctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgattgttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90433" stop="87117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90133" g_stop="89897" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="457" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87417" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="598" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E314088" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90133" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAG</genome_strand>
        <mrna_strand>CTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTGTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701742" ref_strand="+" ref_description="SGN-E701742 [FA16DC08]">
      <seq>gagcctttcagttgacccagctaagcagaaatgcccctaagctccccaattttttccaacatatattttttttttcaaaaaaaataatcatataggagtgaacttttaactaaaatacaaaaaactcagttgcctggaagcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcaaaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaaaaaaaattcaagatttcaataaaaaagtgatttttaaaaaaaattcaaaaacccaagtttcccaaaaagcaatttttactgtgattttacaagatttagctatgaaaaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaataaagatggagttcaaattgtttcgcaaagtgaagttgcagctccttcagttatacagccatcaaacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgaaaattaatcagtcatcccagtgtccatatgttgccatatgctatcagccgttcttcgacaagggtgctatatccttgattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90647" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90347" g_stop="89897" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="536" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="671" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87419" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="810" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E701742" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90347" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGG</genome_strand>
        <mrna_strand>GAGCCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAAAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAAAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAAAAAAATTCAAGATTTCAATAAAAAAGTGATTTTTAAAAAAAATTCAAAAACCCAAGTTTCCCAAAAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAAAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAAAGATGGAGTTCAAATTGTTTCGCAAAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAAACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAAAATTAATCAGTCATCCCAGTGTCCATATGTTGCCATATGCTATCAGCCGTTCTTCGACAAGGGTGCTATATCCTTGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304075" ref_strand="+" ref_description="SGN-E304075 [cLEX-6-B23]">
      <seq>gcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90449" stop="87144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="89897" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="338" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87444" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="587" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E304075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGAC</genome_strand>
        <mrna_strand>GCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314749" ref_strand="+" ref_description="SGN-E314749 [cTOA-20-I4]">
      <seq>tgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattggctcagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90432" stop="87146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90132" g_stop="89897" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="457" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87446" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="569" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E314749" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90132" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAAT-AAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCG</genome_strand>
        <mrna_strand>TGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGGCTCAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457159" ref_strand="+" ref_description="SGN-E457159 [cPRO-1-J7]">
      <seq>gcaactttcactttgggtgttcaagatttcaataaaaaagtgatttttaagaagaattcaagaaccccagttgcccaagaagcaatttttactgtgatttaacaaaatttagctatgaagaaaggatcttttgctcctaatcttaaactttctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagttaaaggtattggaaagggaaatggtgggattgtgcggctggttcagcataaatggacagggcaatttttcgctctcaagggtattcagatgaatattgacgagtccatgcgcaaacatatttgctcagaactgagaattaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90427" stop="87191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90073" g_stop="89897" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="191" r_length="177" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="276" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="411" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87491" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="478" r_length="67" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E457159" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90073" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATA-TTGCTCAAGAACTGAGAATTAATCAGT</genome_strand>
        <mrna_strand>GGGTGTTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGTGATTTAACAAAATTTAGCTATGAAGAAAGGATCTTTTGCTCCTAATCTTAAACTTTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTTAAAGGTATTGGAAAGGGAAATGGTGGGATTGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCAGATGAATATTGACGAGTCCATGCGCAAACATATTTGCTC-AGAACTGAGAATTAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701619" ref_strand="+" ref_description="SGN-E701619 [FA16BH11]">
      <seq>gagtctttcagttgacccagctaagcagaaatgcccctaagctccccaattttttccaacatatattttttttttcaaaaaaaataatcatataggagtgaacttttaactaaaatacaaaaaactcagttgcctggaagcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcaaaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaaaaaaaattcaagatttcaataaaaaagtgatttttaaaaaaaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttacctatgaaaaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcaaagtgaagttgcagctccttcagttatacagccatcaaacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcaaatgaatattgatgagtctatgcgcaaacatattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90647" stop="87211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90347" g_stop="89897" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="536" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="671" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87511" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="718" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E701619" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90347" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCA</genome_strand>
        <mrna_strand>GAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAAAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAAAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAAAAAAATTCAAGATTTCAATAAAAAAGTGATTTTTAAAAAAAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTACCTATGAAAAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAAAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAAACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAAATGAATATTGATGAGTCTATGCGCAAACATATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293225" ref_strand="+" ref_description="SGN-E293225 [cLET-12-H13]">
      <seq>caaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90448" stop="87218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="89897" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="337" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="472" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87518" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="512" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E293225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATA</genome_strand>
        <mrna_strand>CAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331066" ref_strand="+" ref_description="SGN-E331066 [cTOD-6-E22]">
      <seq>caactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcatcataaatggacagggcaattcttcgctctcaaggttattcagatgaatattgatgagtctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90426" stop="88025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90126" g_stop="89897" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="315" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="450" r_length="135" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E331066" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90126" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG</genome_strand>
        <mrna_strand>CAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCATCATAAATGGACAGGGCAATTCTTCGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208381" ref_strand="+" ref_description="SGN-E208381 [cLEC-37-M20]">
      <seq>aagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaattnttcgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90473" stop="88041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90173" g_stop="89897" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="362" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="494" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E208381" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90173" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTC</genome_strand>
        <mrna_strand>AAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTNTTCGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288623" ref_strand="+" ref_description="SGN-E288623 [cLES-8-A12]">
      <seq>tcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcatgaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90420" stop="88067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90120" g_stop="89897" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="309" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88367" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="415" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E288623" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90120" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATA</genome_strand>
        <mrna_strand>TCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCATGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323769" ref_strand="+" ref_description="SGN-E323769 [cTOC-5-N15]">
      <seq>ttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90437" stop="88094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90137" g_stop="89897" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="326" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="405" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E323769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90137" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATG</genome_strand>
        <mrna_strand>TTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203798" ref_strand="+" ref_description="SGN-E203798 [cLEC-17-B4]">
      <seq>aagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90473" stop="88095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90173" g_stop="89897" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="362" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88395" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="440" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E203798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90173" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAAT</genome_strand>
        <mrna_strand>AAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203948" ref_strand="+" ref_description="SGN-E203948 [cLEC-22-K7]">
      <seq>ggagtgaacttttaactagaatacaaaaaactcagttgcctggaggcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcacaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatctcaataaaaaaaaagtgatttttaagaagaattcaagattgcaatagaaaagggagttttaagaggaattcaagaacccaagtttgccacgaagcaattcttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90553" stop="89369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90253" g_stop="89897" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89669" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="418" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E203948" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90253" e_stop="89897"/>
          <exon e_start="89729" e_stop="89669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATT</genome_strand>
        <mrna_strand>GGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAGGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCACAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATCTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTGCAATAGAAAAGGGAGTTTTAAGAGGAATTCAAGAACCCAAGTTTGCCACGAAGCAATTCTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355584" ref_strand="+" ref_description="SGN-E355584 [cLHT-1-E11]">
      <seq>aactttcattttgggtgttcaagatttcaataaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaaccccagttgcccaagaagcaatttttactgggattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90425" stop="89638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90125" g_stop="89938" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E355584" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90125" e_stop="89938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTC</genome_strand>
        <mrna_strand>AACTTTCATTTTGGGTGTTCAAGATTTCAATAAA---AAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCCAGTTGCCCAAGAAGCAATTTTTACTGGGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338836" ref_strand="+" ref_description="SGN-E338836 [cTOE-21-E7]">
      <seq>ctgctattatttgcaagacttctacatagagtctttcagttgacccagctaagcagaaatgcccctaagctccccaattttttccaacatatattttttttttcaaaaaaaataatcatataggagtgaacttttaactagaatacaaaaaactcagtggcctggaagcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90675" stop="89686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90375" g_stop="89986" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-E338836" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90375" e_stop="89986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTA</genome_strand>
        <mrna_strand>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTGGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613611" ref_strand="+" ref_description="SGN-E613611 [63388]">
      <seq>attttcactaggggttcaattctctacccaatccaaaaatcgccatgaaactagcttcactagacagtgtaacaaatgctcacgacgattccatttggtcggcggcgtgggtacggtcgacggaggaatatccggcgttacttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcacttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgccgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctccgccttctgaagtctggcaattgcaatttagtcccaatggtagcaatctggcagcagctggaggtggtagttcatcagtcaagctatgggatactactcagtgggaacttgttaccacaatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtaggcttcttgcttgtggatcagttgatgggactatttctggtttgatgtagctcgtgccaagttccttcacttcttagatggccaataccatgcctgtgcgtactcttgtgtttcaccttcacttcacgattcaagaatactcttcttcagcatcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93909" stop="97541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94209" g_stop="94590" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97241" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="713" r_length="330" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E613611" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94209" e_stop="94590"/>
          <exon e_start="96912" e_stop="97241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTA-GGGTTCAATTCTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCC-ATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTC-TCAGCATCAGAT</genome_strand>
        <mrna_strand>ATTTTCACTAGGGGTTCAATTCTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTAGACAGTGTAACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTACGGTCGACGGAGGAATATCCGGCGTTACTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCACTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCCGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCGCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGCTATGGGATACTACTCAGTGGGAACTTGTTACCACAATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGGCTTCTTGCTTGTGGATCAGTTGATGGGACTATTTCTG-GTTTGATGTAGCTCGTGCCAAGTTCCTTCACTTCTTAGATGGCCAATACCATGCCTGTGCGTACTCTTGTG-TTTCACCTTCACTTCACGATTCAAGAATACTCTTCTTCAGCATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701202" ref_strand="+" ref_description="SGN-E701202 [FA15BC05]">
      <seq>ctctacccaatccaaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaagctatgggatcttaagatgagagcggctacgcaaactttaaccaaccatacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93929" stop="97736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94229" g_stop="94590" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97436" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="887" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E701202" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94229" e_stop="94590"/>
          <exon e_start="96912" e_stop="97436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGAT</genome_strand>
        <mrna_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAAGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707288" ref_strand="+" ref_description="SGN-E707288 [FA32CD01]">
      <seq>ctctacccaatccaaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggtcataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93929" stop="97668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94229" g_stop="94590" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97368" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="819" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E707288" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94229" e_stop="94590"/>
          <exon e_start="96912" e_stop="97368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTG</genome_strand>
        <mrna_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGTCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702894" ref_strand="+" ref_description="SGN-E702894 [FA20AA04]">
      <seq>cccaatccaaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacgcaaactttaccaaccatacagatcaggtttgggctgtggcttttggaccacatcaaggactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93934" stop="97779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94234" g_stop="94590" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97479" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="923" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E702894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94234" e_stop="94590"/>
          <exon e_start="96912" e_stop="97479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATG</genome_strand>
        <mrna_strand>CCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTT-ACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACC-ACATCAAGGACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470364" ref_strand="+" ref_description="SGN-E470364 [cSTB-17-P16]">
      <seq>tttaatccaaaaatcgccatgaaactagcttgggggagacagtggaacaaatgctcacgacgactccatttggtcggcggcgtgggtacggtcgacggaggaatatccggcgttacttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcacttgtgttcaaactttcaccggtcattgtctcggcgttgaatctgttgctacacatcctactcgtagaattgccgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctccgccttctgaagtctggcaattgcaatttagtcccaatggtagcaatctggcagcagctggaggtggtagttcatcagtcaagctatgggatactactcagtgggaacttggtaccacaatgtccattcctcggcaaggagccccacaaccatctgataaaagcaccaacaagaaatttggcctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93937" stop="97361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94234" g_stop="94590" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97061" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="508" r_length="150" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E470364" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94234" e_stop="94590"/>
          <exon e_start="96912" e_stop="97061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCCAAAAATCGCCATGAAACTAGCTT-CACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCA</genome_strand>
        <mrna_strand>TTTAATCCAAAAATCGCCATGAAACTAGCTTGGGGGAGACAGTGGAACAAATGCTCACGACGACTCCATTTGGTCGGCGGCGTGGGTACGGTCGACGGAGGAATATCCGGCGTTACTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCACTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGAATCTGTTGCTACACATCCTACTCGTAGAATTGCCGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCGCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGCTATGGGATACTACTCAGTGGGAACTTGGTACCACAATGTCCATTCCTCGGCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGGCCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537806" ref_strand="+" ref_description="SGN-E537806 [TUS-56-J14]">
      <seq>ccaaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93940" stop="97667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94240" g_stop="94590" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97367" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="807" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E537806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94240" e_stop="94590"/>
          <exon e_start="96912" e_stop="97367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGT</genome_strand>
        <mrna_strand>CCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267628" ref_strand="+" ref_description="SGN-E267628 [cLEI-8-D18]">
      <seq>caaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93941" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94241" g_stop="94590" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97116" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="555" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E267628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94241" e_stop="94590"/>
          <exon e_start="96912" e_stop="97116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTA</genome_strand>
        <mrna_strand>CAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537804" ref_strand="+" ref_description="SGN-E537804 [TUS-56-J14](-)">
      <seq>accacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacgcaaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaaggactgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctatcagtactcttaacagttgcagccattgcatgctttgtatgttggtatgatgtctcaagaaaatatttgacttaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96687" stop="97905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96987" g_stop="97604" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="643"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E537804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96987" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTT</genome_strand>
        <mrna_strand>ACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227418" ref_strand="+" ref_description="SGN-E227418 [cLEL-30-L13](-)">
      <seq>ttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacgcaaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaaggactgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctatcagtactcttaacagttgcagccattgcatgctttgtatgttggtatgatgtctcaagaaaatatttgacttattttcgaatttgatttaatataaatattttcatgataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96907" stop="97945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97207" g_stop="97644" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="460"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E227418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97207" e_stop="97644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTTATTTTCGAATTTGATTTAATATAAATATTTTCATGATAGA</genome_strand>
        <mrna_strand>TTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTTATTTTCGAATTTGATTTAATATAAATATTTTCATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227492" ref_strand="+" ref_description="SGN-E227492 [cLEL-30-L13](-)">
      <seq>gtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacgcaaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaaggactgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctatcagtactcttaacagttgcagccattgcatgctttgtatgttggtatgatgtctcaagaaaatatttgacttattttcgaatttgatttaatataaatattttcatgataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-Anh3I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="96946" stop="97945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97246" g_stop="97644" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="421"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-E227492" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97246" e_stop="97644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTTATTTTCGAATTTGATTTAATATAAATATTTTCATGATAGA</genome_strand>
        <mrna_strand>GTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTTATTTTCGAATTTGATTTAATATAAATATTTTCATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>163</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3823" PGL_stop="326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3823" e_stop="3747"/>
            <exon e_start="2485" e_stop="2212"/>
            <exon e_start="669" e_stop="540"/>
            <exon e_start="442" e_stop="326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3823" e_stop="3747" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.935">
            <gDNA_intron_boundary i_start="3746" i_stop="2486" i_length="1261"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="2485" e_stop="2212" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2211" i_stop="670" i_length="1542"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="669" e_stop="540" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="539" i_stop="443" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="442" e_stop="326" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3823" stop="3747"/>
              <exon start="2485" stop="2212"/>
              <exon start="669" stop="540"/>
              <exon start="442" stop="326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3799" stop="3747"/>
              <exon start="2485" stop="2212"/>
              <exon start="669" stop="540"/>
              <exon start="442" stop="326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG : GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATG : GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC : TAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</gDNA_template>
            <first_frame> L  W  L  L  S  K  F  S  S  V  V  M  Y  S  A  V  S  I  I  Y  S  N  A  F  L  R :   *  T  R  Q  L  V  H  L  M  L  F  F  A  *  A  N  F  F  L  I  Q  L  R  G  L  M  N  S  M  A  T  L  R  G  V  P  R  F  R  Y  R  P  I  S  L  V  I  M  V  Q  G  P  Q  K  Y  C  Q  K  H  *  R  T  R  V  T  K  G  L  R  W  R  V  *  E  S  V  T  I  C  T  G  *  K  E  V  G  S  L  A  L  M  :  G  Y  L  W  H  T  Y  L  V  G  E  L  Q  V  E  L  N  S  E  H  I  V  K  M  M  L  M  L  *  G  L  *  Q  R  I  Q  *  Q  *  T  S  F  L   : L  M  S  G  P  V  E  *  Q  M  E  R  H  Q  K  L  L  *  K  F  L  I  H  L  G  V  I  P  Q  C  Q  S  W  *  L  R  L  S  L  </first_frame>
            <second_frame>  Y  G  S  S  Q  N  S  P  L  W  *  C  T  R  P  S  Q  S  S  I  Q  T  R  F  F   : G  E  Q  G  S  W  S  I  *  C  S  S  L  R  R  P  I  F  S  *  F  S  *  G  D  *  *  I  Q  W  L  H  *  G  A  F  Q  D  S  D  T  D  L  F  H  W  *  L  W  C  R  V  P  K  N  I  V  R  S  I  K  G  P  E  *  Q  R  V  *  D  G  G  F  K  S  L  *  Q  F  V  L  V  E  R  K  W  E  V  *  P  *  W :   V  I  C  G  I  L  I  W  *  A  N  S  K  W  N  S  I  R  N  I  *  S  R  *  C  *  C  F  E  G  F  S  R  G  S  S  N  S  R  H  L  S  Y  :  *  *  V  A  Q  W  S  N  K  W  N  D  I  K  S  S  C  R  N  F  *  F  I  W  E  *  S  H  S  V  R  V  G  N  *  D  *  A  S </second_frame>
            <third_frame>   M  A  P  L  K  I  L  L  C  G  D  V  L  G  R  L  N  H  L  F  K  R  V  S  S  :  V  N  K  A  A  G  P  F  D  A  L  L  C  V  G  Q  F  F  P  D  S  V  E  G  I  D  E  F  N  G  Y  I  E  G  R  S  K  I  P  I  P  T  Y  F  I  G  D  Y  G  A  G  S  P  K  I  L  S  E  A  L  K  D  P  S  N  K  G  F  K  M  E  G  L  R  V  C  D  N  L  Y  W  L  K  G  S  G  K  F  S  L  N   : G  L  S  V  A  Y  L  S  G  R  R  T  P  S  G  T  Q  F  G  T  Y  S  Q  D  D  V  D  A  L  R  A  L  A  E  D  P  V  T  V  D  I  F  L  T :   N  E  W  P  S  G  V  T  N  G  T  T  S  K  A  P  V  E  I  S  D  S  S  G  S  D  P  T  V  S  E  L  V  T  E  I  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3821" stop="3747"/>
                    <exon start="2485" stop="2212"/>
                    <exon start="669" stop="540"/>
                    <exon start="442" stop="328"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAPLKILLCGDVLGRLNHLFKRVSSVNKAAGPFDALLCVGQFFPDSVEGIDEFNGYIEGRSKIPIPTYFIGDYGAGSPKILSEALKDPSNKGFKMEGLRVCDNLYWLKGSGKFSLNGLSVAYLSGRRTPSGTQFGTYSQDDVDALRALAEDPVTVDIFLTNEWPSGVTNGTTSKAPVEISDSSGSDPTVSELVTEIKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9905" PGL_stop="5741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9905" e_stop="9235"/>
            <exon e_start="8443" e_stop="8316"/>
            <exon e_start="7953" e_stop="7690"/>
            <exon e_start="7492" e_stop="7222"/>
            <exon e_start="6380" e_stop="5741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.799" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="1.000" e_score="0.982"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9905" e_stop="9235" e_length="671"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="8316" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7953" e_stop="7690" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7689" i_stop="7493" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="7492" e_stop="7222" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="6380" e_stop="5741" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9883" stop="9235"/>
              <exon start="8443" stop="8351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9811" stop="9378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9272" stop="9235"/>
              <exon start="8443" stop="8316"/>
              <exon start="7953" stop="7714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8376" stop="8316"/>
              <exon start="7953" stop="7690"/>
              <exon start="7492" stop="7222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8375" stop="8316"/>
              <exon start="7953" stop="7716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7371" stop="7222"/>
              <exon start="6380" stop="5983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7338" stop="7222"/>
              <exon start="6380" stop="5976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7268" stop="7222"/>
              <exon start="6380" stop="5763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6105" stop="5741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341509" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAG : GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA : GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAG : AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG : ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</gDNA_template>
            <first_frame> L  L  L  I  I  S  F  F  F  S  F  F  Y  Y  G  *  V  F  F  I  L  W  L  *  Y  Y  Y  F  L  Y  Y  Y  S  F  N  V  H  F  R  K  V  K  T  M  E  S  F  N  S  L  *  N  S  F  T  *  Y  F  I  K  T  *  Y  K  F  S  C  Y  *  R  I  F  Q  R  F  W  K  N  Y  S  R  N  I  T  S  C  C  S  L  S  F  L  C  *  *  H  N  *  P  H  T  I  F  L  *  P  F  C  P  F  S  C  S  S  Q  R  S  W  T  F  H  *  G  T  S  H  G  K  K  W  G  N  C  G  N  E  F  F  K  *  *  *  *  *  E  L  W  C  *  G  F  L  G  F  G  F  R  V  L  R  G  C  W  R  *  T  I  M  D  *  C  S  S  *  H  P  R  V  W  L  S  T  C  F  M  D  R  L  F  V  P  Y  R  W  W  Y  T  L  *  C  W  N  *  W  S  N  F  S  I  W  S  S  N  K  *  R  S  *  D  G  C  Y  Y  R :   *  R  G  I  N  D  L  L  Q  R  Y  E  F  R  I  V  F  W  S  F  R  R  F  G  T  V  W  N  N  N  K  S  K  N  C  L  G  *  S  T  N  K   : S  E  M  G  E  N  V  I  *  *  F  L  K  I  H  K  R  S  R  T  S  Y  F  N  S  *  *  W  I  G  L  C  *  R  L  S  N  D  G  A  K  L  S  K  *  L  E  I  F  I  L  F  T  F  Q  S  N  Q  N  C  F  I  I  I  Q  K  *  N  H  V  L  L  G  N  S  E  V  L  *  *  P  K  C  *  Y  Y  *  *   : E  E  L  K  K  L  V  K  G  L  K  Y  V  G  G  F  M  F  K  K  D  V  S  F  V  E  F  L  N  R  V  R  S  G  E  L  E  L  Q  S  K  G  M  W  D  V  P  H  P  W  L  N  L  F  V  P  K  S  S  I  M  H  F  N  A  A  V  F  V  D  I  I  L  R  Q  N  K  T  N  G  P  I  L  V  Y  P  T  S  R  K  R :   W  D  D  R  M  S  A  I  I  P  E  E  E  T  F  Y  C  V  G  L  L  H  S  S  S  G  Y  N  E  C  K  I  L  D  N  Q  N  E  E  I  L  N  Y  C  D  K  V  G  L  N  I  K  Q  Y  L  P  H  Y  K  T  K  E  D  W  I  K  H  F  G  K  K  W  N  I  F  Q  Q  R  K  D  L  F  D  P  K  M  I  L  S  P  G  Q  R  I  F  N  *  V  F  I  N  K  *  Y  D  I  M  I  G  M  I  K  D  D  K  Y  F  V  K  L  V  E  M  C  K  S  W  L  E  H  Q  N  R  P  I  R  L  *  G  G  K  R  *  Q  I  F  R  E  I  S  *  T  M  *  K  L  I  R  T  S  E  S  L  R  V  G  G  R  V  V  S  F  *  L  L  E  L  M  Y  F  Y  F  I  L  F  W  C  V  R  K  I  N  *  M  M  *  S  F  F  S  Y  H  L  I  I  I  C  E  V  C  F  L  * </first_frame>
            <second_frame>  Y  F  *  *  F  P  F  F  F  L  S  S  I  M  A  K  F  F  L  S  Y  G  Y  N  I  I  I  F  F  I  I  T  H  L  M  S  I  L  G  K  L  K  P  W  N  P  S  I  P  Y  E  I  L  S  L  N  I  S  S  K  L  S  T  N  S  H  A  I  K  E  S  S  K  D  F  G  K  I  I  Q  E  I  L  P  A  A  V  L  Y  P  S  C  V  N  D  I  I  D  L  I  Q  F  S  Y  D  L  S  V  P  F  H  V  A  A  K  G  H  G  H  S  I  R  G  Q  A  M  A  K  N  G  V  I  V  E  M  S  S  L  N  N  N  N  N  E  N  C  G  V  R  V  S  W  D  S  D  L  G  F  Y  A  D  V  G  G  E  Q  L  W  I  D  V  L  H  N  T  L  E  Y  G  L  A  P  V  S  W  T  D  Y  L  Y  L  T  V  G  G  T  L  S  N  A  G  I  S  G  Q  T  F  R  Y  G  P  Q  I  S  N  V  H  E  M  D  V  I  T   : G  K  G  E  L  M  T  C  S  K  D  M  N  S  E  L  F  F  G  V  L  G  G  L  G  Q  F  G  I  I  T  R  A  R  I  V  L  D  K  A  P  T  R  :  V  K  W  V  R  M  L  Y  D  D  F  S  K  F  T  K  D  Q  E  H  L  I  S  I  H  N  N  G  L  D  Y  V  E  G  S  L  M  M  E  Q  S  S  L  N  N  W  R  S  S  F  Y  S  P  S  N  Q  T  K  I  A  S  L  L  S  K  N  K  I  M  Y  C  L  E  I  V  K  Y  Y  D  D  Q  N  A  N  T  I  D  K  :  R  S  *  R  S  W  *  K  D  *  S  M  *  V  D  L  C  S  R  K  M  *  V  L  W  N  F  *  I  E  L  E  V  G  N  *  S  Y  N  Q  K  E  C  G  M  F  H  I  H  G  S  I  C  L  Y  Q  S  L  L  S  C  I  L  M  L  L  F  L  W  T  *  S  S  D  K  T  R  Q  M  D  P  Y  L  S  T  Q  Q  V  G  K   : D  G  M  I  G  C  Q  Q  *  Y  Q  K  K  K  H  F  I  V  W  D  F  Y  I  L  Q  V  D  I  M  N  A  K  F  W  I  I  K  M  K  K  Y  *  I  I  V  I  K  L  A  S  I  *  S  N  I  F  H  I  T  R  Q  K  R  I  G  S  N  I  L  V  K  N  G  I  F  F  N  K  E  K  I  Y  L  I  Q  R  *  F  Y  H  Q  D  K  E  F  L  I  R  F  S  S  I  N  S  T  I  *  *  *  G  *  *  K  M  T  N  I  S  *  N  *  L  K  C  V  K  V  G  S  N  I  R  I  V  L  *  G  Y  R  V  V  K  G  D  R  Y  F  V  K  S  V  K  L  C  K  S  *  F  E  H  Q  N  R  *  G  *  E  G  G  L  *  V  F  N  C  W  S  *  C  I  F  I  L  F  Y  F  G  V  L  E  R  *  I  R  *  C  K  A  F  L  A  T  I  *  L  *  Y  V  K  F  V  F  Y   </second_frame>
            <third_frame>   T  S  N  N  F  L  F  F  F  F  L  L  L  W  L  S  F  F  Y  P  M  V  I  I  L  L  F  S  L  L  L  L  I  *  C  P  F  *  E  S  *  N  H  G  I  L  Q  F  L  M  K  F  F  H  L  I  F  H  Q  N  L  V  Q  I  L  M  L  L  K  N  L  P  K  I  L  E  K  L  F  K  K  Y  Y  Q  L  L  F  F  I  L  L  V  L  M  T  *  L  T  S  Y  N  F  L  M  T  F  L  S  L  F  M  *  Q  P  K  V  M  D  I  P  L  G  D  K  P  W  Q  K  M  G  *  L  W  K  *  V  L  *  I  I  I  I  M  R  I  V  V  L  G  F  L  G  I  R  I  *  G  F  T  R  M  L  E  V  N  N  Y  G  L  M  F  F  I  T  P  *  S  M  A  *  H  L  F  H  G  Q  I  I  C  T  L  P  L  V  V  H  S  L  M  L  E  L  V  V  K  L  F  D  M  V  L  K  *  V  T  F  M  R  W  M  L  L  Q  :  V  K  G  N  *  *  L  A  P  K  I  *  I  Q  N  C  F  L  E  F  *  E  V  W  D  S  L  E  *  *  Q  E  Q  E  L  S  W  I  K  H  Q  Q  E :   *  N  G  *  E  C  Y  M  M  I  S  Q  N  S  Q  K  I  K  N  I  L  F  Q  F  I  I  M  D  W  I  M  L  K  A  L  *  *  W  S  K  A  L  *  I  I  G  D  L  H  F  I  H  L  P  I  K  P  K  L  L  H  Y  Y  P  K  I  K  S  C  I  A  W  K  *  *  S  T  M  M  T  K  M  L  I  L  L  I  R :   G  V  E  E  V  G  K  R  I  E  V  C  R  W  I  Y  V  Q  E  R  C  E  F  C  G  I  F  E  *  S  *  K  W  G  I  R  V  T  I  K  R  N  V  G  C  S  T  S  M  A  Q  F  V  C  T  K  V  F  Y  H  A  F  *  C  C  C  F  C  G  H  N  P  Q  T  K  Q  D  K  W  T  H  T  C  L  P  N  K  *  E  K  :  M  G  *  *  D  V  S  N  N  T  R  R  R  N  I  L  L  C  G  T  F  T  F  F  K  W  I  *  *  M  Q  N  F  G  *  S  K  *  R  N  I  K  L  L  *  *  S  W  P  Q  Y  K  A  I  S  S  T  L  Q  D  K  R  G  L  D  Q  T  F  W  *  K  M  E  Y  F  S  T  K  K  R  S  I  *  S  K  D  D  S  I  T  R  T  K  N  F  *  L  G  F  H  Q  *  I  V  R  Y  N  D  R  D  D  K  R  *  Q  I  F  R  E  I  S  *  N  V  *  K  L  A  R  T  S  E  S  S  Y  K  A  I  G  W  *  K  V  T  D  I  S  *  N  Q  L  N  Y  V  K  A  D  S  N  I  R  I  V  K  G  R  R  E  G  C  K  F  L  I  V  G  V  D  V  F  L  F  Y  F  I  L  V  C  *  K  D  K  L  D  D  V  K  L  F  *  L  P  F  N  Y  N  M  *  S  L  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9892" stop="9235"/>
                    <exon start="8443" stop="8316"/>
                    <exon start="7953" stop="7690"/>
                    <exon start="7492" stop="7484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFFFLSSIMAKFFLSYGYNIIIFFIITHLMSILGKLKPWNPSIPYEILSLNISSKLSTNSHAIKESSKDFGKIIQEILPAAVLYPSCVNDIIDLIQFSYDLSVPFHVAAKGHGHSIRGQAMAKNGVIVEMSSLNNNNNENCGVRVSWDSDLGFYADVGGEQLWIDVLHNTLEYGLAPVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVHEMDVITGKGELMTCSKDMNSELFFGVLGGLGQFGIITRARIVLDKAPTRVKWVRMLYDDFSKFTKDQEHLISIHNNGLDYVEGSLMMEQSSLNNWRSSFYSPSNQTKIASLLSKNKIMYCLEIVKYYDDQNANTIDKRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7690" stop="7222"/>
                    <exon start="6380" stop="6089"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELKKLVKGLKYVGGFMFKKDVSFVEFLNRVRSGELELQSKGMWDVPHPWLNLFVPKSSIMHFNAAVFVDIILRQNKTNGPILVYPTSRKRWDDRMSAIIPEEETFYCVGLLHSSSGYNECKILDNQNEEILNYCDKVGLNIKQYLPHYKTKEDWIKHFGKKWNIFQQRKDLFDPKMILSPGQRIFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9905" e_stop="9478"/>
            <exon e_start="8636" e_stop="8605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="9905" e_stop="9478" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9477" i_stop="8637" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8636" e_stop="8605" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9852" stop="9478"/>
              <exon start="8636" stop="8605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATA : ATAATAATAATAATAATAATAATAATAATAAT</gDNA_template>
            <first_frame> L  L  L  I  I  S  F  F  F  S  F  F  Y  Y  G  *  V  F  F  I  L  W  L  *  Y  Y  Y  F  L  Y  Y  Y  S  F  N  V  H  F  R  K  V  K  T  M  E  S  F  N  S  L  *  N  S  F  T  *  Y  F  I  K  T  *  Y  K  F  S  C  Y  *  R  I  F  Q  R  F  W  K  N  Y  S  R  N  I  T  S  C  C  S  L  S  F  L  C  *  *  H  N  *  P  H  T  I  F  L  *  P  F  C  P  F  S  C  S  S  Q  R  S  W  T  F  H  *  G  T  S  H  G  K  K  W  G  N  C  G  N  E  F  F  K  *  *  *  * :   *  *  *  *  *  *  *  *  *  *  </first_frame>
            <second_frame>  Y  F  *  *  F  P  F  F  F  L  S  S  I  M  A  K  F  F  L  S  Y  G  Y  N  I  I  I  F  F  I  I  T  H  L  M  S  I  L  G  K  L  K  P  W  N  P  S  I  P  Y  E  I  L  S  L  N  I  S  S  K  L  S  T  N  S  H  A  I  K  E  S  S  K  D  F  G  K  I  I  Q  E  I  L  P  A  A  V  L  Y  P  S  C  V  N  D  I  I  D  L  I  Q  F  S  Y  D  L  S  V  P  F  H  V  A  A  K  G  H  G  H  S  I  R  G  Q  A  M  A  K  N  G  V  I  V  E  M  S  S  L  N  N  N  N   : N  N  N  N  N  N  N  N  N  N  N </second_frame>
            <third_frame>   T  S  N  N  F  L  F  F  F  F  L  L  L  W  L  S  F  F  Y  P  M  V  I  I  L  L  F  S  L  L  L  L  I  *  C  P  F  *  E  S  *  N  H  G  I  L  Q  F  L  M  K  F  F  H  L  I  F  H  Q  N  L  V  Q  I  L  M  L  L  K  N  L  P  K  I  L  E  K  L  F  K  K  Y  Y  Q  L  L  F  F  I  L  L  V  L  M  T  *  L  T  S  Y  N  F  L  M  T  F  L  S  L  F  M  *  Q  P  K  V  M  D  I  P  L  G  D  K  P  W  Q  K  M  G  *  L  W  K  *  V  L  *  I  I  I  I  :  I  I  I  I  I  I  I  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9892" stop="9478"/>
                    <exon start="8636" stop="8605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFFFLSSIMAKFFLSYGYNIIIFFIITHLMSILGKLKPWNPSIPYEILSLNISSKLSTNSHAIKESSKDFGKIIQEILPAAVLYPSCVNDIIDLIQFSYDLSVPFHVAAKGHGHSIRGQAMAKNGVIVEMSSLNNNNNNNNNNNNNNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9905" e_stop="9476"/>
            <exon e_start="8637" e_stop="8596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="9905" e_stop="9476" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9475" i_stop="8638" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="0.857">
            <gDNA_exon_boundary e_start="8637" e_stop="8596" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9476"/>
              <exon start="8637" stop="8596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAAT : AATAATAATAATAATAATAATAATAATAATAATATATTTTTT</gDNA_template>
            <first_frame> L  L  L  I  I  S  F  F  F  S  F  F  Y  Y  G  *  V  F  F  I  L  W  L  *  Y  Y  Y  F  L  Y  Y  Y  S  F  N  V  H  F  R  K  V  K  T  M  E  S  F  N  S  L  *  N  S  F  T  *  Y  F  I  K  T  *  Y  K  F  S  C  Y  *  R  I  F  Q  R  F  W  K  N  Y  S  R  N  I  T  S  C  C  S  L  S  F  L  C  *  *  H  N  *  P  H  T  I  F  L  *  P  F  C  P  F  S  C  S  S  Q  R  S  W  T  F  H  *  G  T  S  H  G  K  K  W  G  N  C  G  N  E  F  F  K  *  *  *  *   : *  *  *  *  *  *  *  *  *  *  *  Y  I  F  </first_frame>
            <second_frame>  Y  F  *  *  F  P  F  F  F  L  S  S  I  M  A  K  F  F  L  S  Y  G  Y  N  I  I  I  F  F  I  I  T  H  L  M  S  I  L  G  K  L  K  P  W  N  P  S  I  P  Y  E  I  L  S  L  N  I  S  S  K  L  S  T  N  S  H  A  I  K  E  S  S  K  D  F  G  K  I  I  Q  E  I  L  P  A  A  V  L  Y  P  S  C  V  N  D  I  I  D  L  I  Q  F  S  Y  D  L  S  V  P  F  H  V  A  A  K  G  H  G  H  S  I  R  G  Q  A  M  A  K  N  G  V  I  V  E  M  S  S  L  N  N  N  N  N  :  N  N  N  N  N  N  N  N  N  N  N  I  F  F </second_frame>
            <third_frame>   T  S  N  N  F  L  F  F  F  F  L  L  L  W  L  S  F  F  Y  P  M  V  I  I  L  L  F  S  L  L  L  L  I  *  C  P  F  *  E  S  *  N  H  G  I  L  Q  F  L  M  K  F  F  H  L  I  F  H  Q  N  L  V  Q  I  L  M  L  L  K  N  L  P  K  I  L  E  K  L  F  K  K  Y  Y  Q  L  L  F  F  I  L  L  V  L  M  T  *  L  T  S  Y  N  F  L  M  T  F  L  S  L  F  M  *  Q  P  K  V  M  D  I  P  L  G  D  K  P  W  Q  K  M  G  *  L  W  K  *  V  L  *  I  I  I  I  I :   I  I  I  I  I  I  I  I  I  I  I  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9892" stop="9476"/>
                    <exon start="8637" stop="8596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFFFLSSIMAKFFLSYGYNIIIFFIITHLMSILGKLKPWNPSIPYEILSLNISSKLSTNSHAIKESSKDFGKIIQEILPAAVLYPSCVNDIIDLIQFSYDLSVPFHVAAKGHGHSIRGQAMAKNGVIVEMSSLNNNNNNNNNNNNNNNNIFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5784" PGL_stop="6382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5784" e_stop="6382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5784" e_stop="6382" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5784" stop="6382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</gDNA_template>
            <first_frame> K  K  L  Y  I  I  *  F  I  F  L  T  H  Q  N  K  I  K  *  K  Y  I  N  S  N  N  *  K  L  T  T  L  P  P  T  L  N  D  S  D  V  R  I  S  F  Y  I  V  *  L  I  S  R  N  I  C  H  L  L  P  P  Y  S  L  I  G  R  F  *  C  S  S  Q  L  L  H  I  S  T  N  F  T  K  Y  L  S  S  F  I  I  P  I  I  I  S  Y  Y  L  L  M  K  T  *  L  K  I  L  C  P  G  D  R  I  I  F  G  S  N  R  S  F  L  C  *  K  I  F  H  F  L  P  K  C  L  I  Q  S  S  F  V  L  *  C  G  R  Y  C  F  I  L  R  P  T  L  S  Q  *  F  N  I  S  S  F  *  L  S  K  I  L  H  S  L  Y  P  L  E  E  C  K  S  P  T  Q  *  N  V  S  S  S  G  I  I  A  D  I  L  S  S  H   </first_frame>
            <second_frame>  K  S  F  T  S  S  N  L  S  F  *  H  T  K  I  K  *  N  K  N  T  S  T  P  T  I  K  N  L  Q  P  S  L  L  P  L  T  I  L  M  F  E  S  A  F  T  *  F  N  *  F  H  E  I  S  V  T  F  Y  H  P  I  A  L  *  D  D  S  D  V  R  A  N  F  Y  T  F  Q  L  I  S  R  N  I  C  H  L  L  S  S  L  S  L  Y  R  T  I  Y  *  *  K  P  N  *  K  F  F  V  L  V  I  E  S  S  L  D  Q  I  D  L  F  F  V  E  K  Y  S  I  F  Y  Q  N  V  *  S  N  P  L  L  S  C  N  V  E  D  I  A  L  Y  *  G  Q  L  Y  H  N  N  L  I  F  L  H  F  D  Y  P  K  F  C  I  H  Y  I  H  L  K  N  V  K  V  P  H  N  K  M  F  L  L  L  V  L  L  L  T  S  Y  H  P  I  </second_frame>
            <third_frame>   K  A  L  H  H  L  I  Y  L  S  N  T  P  K  *  N  K  I  K  I  H  Q  L  Q  Q  L  K  T  Y  N  P  P  S  Y  P  *  R  F  *  C  S  N  Q  L  L  H  S  L  T  D  F  T  K  Y  L  S  P  F  T  T  L  *  P  Y  R  T  I  L  M  F  E  P  T  F  T  H  F  N  *  F  H  E  I  F  V  I  F  Y  H  P  Y  H  Y  I  V  L  F  I  D  E  N  L  I  K  N  S  L  S  W  *  *  N  H  L  W  I  K  *  I  F  S  L  L  K  N  I  P  F  F  T  K  M  F  D  P  I  L  F  C  L  V  M  W  K  I  L  L  Y  I  E  A  N  F  I  T  I  I  *  Y  F  F  I  L  I  I  Q  N  F  A  F  I  I  S  T  *  R  M  *  K  S  H  T  I  K  C  F  F  F  W  Y  Y  C  *  H  P  I  I  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0011D12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24002" PGL_stop="29531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24002" e_stop="24267"/>
            <exon e_start="24404" e_stop="24466"/>
            <exon e_start="26641" e_stop="26702"/>
            <exon e_start="28157" e_stop="28238"/>
            <exon e_start="28334" e_stop="28401"/>
            <exon e_start="28479" e_stop="28562"/>
            <exon e_start="28638" e_stop="29168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24002" e_stop="24267" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24404" e_stop="24466" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26641" e_stop="26702" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28157" e_stop="28238" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.763">
            <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28334" e_stop="28401" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28479" e_stop="28562" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="28638" e_stop="29168" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24002" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24005" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24024" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24028" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24028" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24098" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24099" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="29089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24147" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24148" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="29168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG : ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG : GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA : GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG : GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG : GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT : GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCATAATAAAACTTTTTACTCATTCCTTCAATA</gDNA_template>
            <first_frame> K  I  L  *  G  E  K  D  V  V  V  L  R  D  D  S  S  S  S  F  S  E  F  I  G  A  T  N  R  S  F  F  F  S  L  S  F  C  F  N  G  G  K  A  S  N  S  *  G  S  I  L  W  S  L  R  F  T  C  *  V  L  *  I  R  I  R  I  *  E  M  Q  T  L  V  D  P  K  C  T  R  S  L  P  G  P  C  *  R :   F  *  F  E  R  S  *  *  G  H  *  S  A  P  V  D  F  N  L  G  R :   F  F  Y  I  *  E  R  R  S  Q  A  P  S  W  W  K  D  *  K  E   : R  *  T  G  D  N  Y  *  K  G  H  Q  K  Q  T  K  E  Y  H  Y  H  Q  G  P  *  N  L  W :   C  *  T  N  *  C  F  E  K  A  W  *  K  V  C  Y  W  S  F  C  G  *   : G  P  D  *  K  G  A  D  R  C  S  R  G  H  I  L  *  H  C  G  L  H  Y  R  N  L  A  R   : C  S  R  V  R  N  I  L  H  R  R  R  K  K  G  S  S  C  I  N  Y  G  D  D  I  P  V  P  S  R  V  F  P  K  Q  M  L  V  A  L  C  S  L  K  F  E  V  R  I  C  V  G  S  I  D  V  A  T  M  V  P  P  S  I  *  Q  I  I  *  K  S  K  E  T  R  R  I  T  *  C  R  P  F  L  V  K  V  H  V  I  N  R  S  D  L  L  E  I  E  A  *  L  C  F  W  H  F  E  H  I  Q  S  P  M  A  F  D  V  K  S  I  L  L  N  Q  K  N  Y  I  C  N  P  T  *  F  M  F  H  M  P  N  *  N  F  I  N  I  P  K  C  E  F  T  F  *  N  F  P  S  F  N  Y  I  H  H  Q  C  I  I  K  L  F  T  H  S  F  N  </first_frame>
            <second_frame>  R  Y  S  K  G  K  K  T  S  S  F  Y  E  T  I  R  L  Q  V  S  A  N  L  S  E  Q  R  I  G  V  F  S  F  L  *  V  F  A  L  M  A  E  K  L  Q  I  V  E  V  L  Y  C  G  V  C  G  L  P  A  E  Y  C  E  F  G  S  E  F  E  K  C  K  P  W  L  I  Q  N  A  P  D  L  Y  P  D  L  V  K   : D  S  N  L  K  E  A  D  K  V  T  D  Q  L  Q  S  T  S  I  S  E   : G  S  S  T  S  K  K  E  E  V  K  R  L  P  G  G  K  I  K  K  K  :  D  K  Q  E  I  I  I  E  K  V  T  R  N  R  R  K  S  I  T  T  I  K  G  L  E  I  F   : G  V  K  L  T  D  A  S  K  K  L  G  K  K  F  A  T  G  A  S  V  V  K  :  G  P  T  E  K  E  Q  I  D  V  Q  G  D  I  S  Y  D  I  V  D  F  I  T  E  T  W  P  D  :  V  P  E  S  A  I  F  F  I  E  D  G  K  K  V  P  A  A  *  T  T  E  M  T  S  L  F  P  A  E  C  F  P  S  K  C  S  *  H  C  V  R  *  N  L  R  *  E  Y  V  L  A  L  *  M  W  L  L  W  F  H  P  L  Y  S  K  *  Y  K  K  A  K  K  H  V  V  S  H  N  V  V  H  S  W  *  R  F  M  *  S  I  D  Q  T  C  L  R  *  R  R  S  C  V  F  G  I  L  S  T  S  N  H  Q  W  L  L  M  *  S  Q  F  C  *  T  K  K  I  T  F  V  T  P  P  S  L  C  F  T  C  L  I  K  I  L  L  T  F  L  S  V  N  L  H  S  K  I  S  Q  V  S  I  I  Y  T  I  N  A  *  *  N  F  L  L  I  P  S  I </second_frame>
            <third_frame>   D  T  L  R  G  K  R  R  R  R  F  T  R  R  F  V  F  K  F  Q  R  I  Y  R  S  N  E  S  E  F  F  L  F  F  E  F  L  L  *  W  R  K  S  F  K  *  L  R  F  Y  I  V  E  F  A  V  Y  L  L  S  I  V  N  S  D  P  N  L  R  N  A  N  P  G  *  S  K  M  H  P  I  S  T  R  T  L  L  K  :  I  L  I  *  K  K  L  I  R  S  L  I  S  S  S  R  L  Q  S  R  K  :  V  L  L  H  L  R  K  K  K  S  S  A  F  L  V  E  R  L  K  R  K :   I  N  R  R  *  L  L  K  R  S  P  E  T  D  E  R  V  S  L  P  S  R  A  L  K  S  L  :  V  L  N  *  L  M  L  R  K  S  L  V  K  S  L  L  L  E  L  L  W  L  R :   A  R  L  K  R  S  R  S  M  F  K  G  T  Y  P  M  T  L  W  T  S  L  Q  K  P  G  Q  M :   F  Q  S  P  Q  Y  S  S  *  K  T  E  K  R  F  Q  L  H  K  L  R  R  *  H  P  C  S  Q  Q  S  V  S  Q  A  N  A  R  S  T  V  F  V  E  I  *  G  E  N  M  C  W  L  Y  R  C  G  Y  Y  G  S  T  L  Y  I  A  N  N  I  K  K  Q  R  N  T  S  Y  H  I  M  S  S  I  L  G  E  G  S  C  N  Q  S  I  R  L  A  *  D  R  G  V  V  V  F  L  A  F  *  A  H  P  I  T  N  G  F  *  C  E  V  N  F  V  E  P  K  K  L  H  L  *  P  H  L  V  Y  V  S  H  A  *  L  K  F  Y  *  H  S  *  V  *  I  Y  I  L  K  F  P  K  F  Q  L  Y  T  P  S  M  H  N  K  T  F  Y  S  F  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24108" stop="24267"/>
                    <exon start="24404" stop="24466"/>
                    <exon start="26641" stop="26702"/>
                    <exon start="28157" stop="28238"/>
                    <exon start="28334" stop="28401"/>
                    <exon start="28479" stop="28562"/>
                    <exon start="28638" stop="28694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFALMAEKLQIVEVLYCGVCGLPAEYCEFGSEFEKCKPWLIQNAPDLYPDLVKDSNLKEADKVTDQLQSTSISEGSSTSKKEEVKRLPGGKIKKKDKQEIIIEKVTRNRRKSITTIKGLEIFGVKLTDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVDFITETWPDVPESAIFFIEDGKKVPAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24002" e_stop="24267"/>
            <exon e_start="24404" e_stop="24466"/>
            <exon e_start="26641" e_stop="26702"/>
            <exon e_start="28157" e_stop="28238"/>
            <exon e_start="28334" e_stop="28401"/>
            <exon e_start="28479" e_stop="28562"/>
            <exon e_start="28638" e_stop="29026"/>
            <exon e_start="29501" e_stop="29531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.677"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24002" e_stop="24267" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24404" e_stop="24466" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26641" e_stop="26702" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28157" e_stop="28238" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.763">
            <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28334" e_stop="28401" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28479" e_stop="28562" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="28638" e_stop="29026" e_length="389"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29027" i_stop="29500" i_length="474"/>
          </intron>
          <exon e_serial="8" e_score="0.677">
            <gDNA_exon_boundary e_start="29501" e_stop="29531" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24002" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24005" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24024" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24028" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24028" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24098" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24147" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24148" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28665" stop="29026"/>
              <exon start="29501" stop="29531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG : ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG : GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA : GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG : GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG : GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT : GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGT : TAAAAGTAAATTTAAAAAAAAAAATTAAAAT</gDNA_template>
            <first_frame> K  I  L  *  G  E  K  D  V  V  V  L  R  D  D  S  S  S  S  F  S  E  F  I  G  A  T  N  R  S  F  F  F  S  L  S  F  C  F  N  G  G  K  A  S  N  S  *  G  S  I  L  W  S  L  R  F  T  C  *  V  L  *  I  R  I  R  I  *  E  M  Q  T  L  V  D  P  K  C  T  R  S  L  P  G  P  C  *  R :   F  *  F  E  R  S  *  *  G  H  *  S  A  P  V  D  F  N  L  G  R :   F  F  Y  I  *  E  R  R  S  Q  A  P  S  W  W  K  D  *  K  E   : R  *  T  G  D  N  Y  *  K  G  H  Q  K  Q  T  K  E  Y  H  Y  H  Q  G  P  *  N  L  W :   C  *  T  N  *  C  F  E  K  A  W  *  K  V  C  Y  W  S  F  C  G  *   : G  P  D  *  K  G  A  D  R  C  S  R  G  H  I  L  *  H  C  G  L  H  Y  R  N  L  A  R   : C  S  R  V  R  N  I  L  H  R  R  R  K  K  G  S  S  C  I  N  Y  G  D  D  I  P  V  P  S  R  V  F  P  K  Q  M  L  V  A  L  C  S  L  K  F  E  V  R  I  C  V  G  S  I  D  V  A  T  M  V  P  P  S  I  *  Q  I  I  *  K  S  K  E  T  R  R  I  T  *  C  R  P  F  L  V  K  V  H  V  I  N  R  S  D  L  L  E  I  E  A  *  L  C  F  W  H  F  E  H  I  Q  S  P  M  A  F  D  V  K  S  I  L  L  N  Q  K  N  Y  I  C  :  *  K  *  I  *  K  K  K  L  K  </first_frame>
            <second_frame>  R  Y  S  K  G  K  K  T  S  S  F  Y  E  T  I  R  L  Q  V  S  A  N  L  S  E  Q  R  I  G  V  F  S  F  L  *  V  F  A  L  M  A  E  K  L  Q  I  V  E  V  L  Y  C  G  V  C  G  L  P  A  E  Y  C  E  F  G  S  E  F  E  K  C  K  P  W  L  I  Q  N  A  P  D  L  Y  P  D  L  V  K   : D  S  N  L  K  E  A  D  K  V  T  D  Q  L  Q  S  T  S  I  S  E   : G  S  S  T  S  K  K  E  E  V  K  R  L  P  G  G  K  I  K  K  K  :  D  K  Q  E  I  I  I  E  K  V  T  R  N  R  R  K  S  I  T  T  I  K  G  L  E  I  F   : G  V  K  L  T  D  A  S  K  K  L  G  K  K  F  A  T  G  A  S  V  V  K  :  G  P  T  E  K  E  Q  I  D  V  Q  G  D  I  S  Y  D  I  V  D  F  I  T  E  T  W  P  D  :  V  P  E  S  A  I  F  F  I  E  D  G  K  K  V  P  A  A  *  T  T  E  M  T  S  L  F  P  A  E  C  F  P  S  K  C  S  *  H  C  V  R  *  N  L  R  *  E  Y  V  L  A  L  *  M  W  L  L  W  F  H  P  L  Y  S  K  *  Y  K  K  A  K  K  H  V  V  S  H  N  V  V  H  S  W  *  R  F  M  *  S  I  D  Q  T  C  L  R  *  R  R  S  C  V  F  G  I  L  S  T  S  N  H  Q  W  L  L  M  *  S  Q  F  C  *  T  K  K  I  T  F  V :   K  S  K  F  K  K  K  N  *  N </second_frame>
            <third_frame>   D  T  L  R  G  K  R  R  R  R  F  T  R  R  F  V  F  K  F  Q  R  I  Y  R  S  N  E  S  E  F  F  L  F  F  E  F  L  L  *  W  R  K  S  F  K  *  L  R  F  Y  I  V  E  F  A  V  Y  L  L  S  I  V  N  S  D  P  N  L  R  N  A  N  P  G  *  S  K  M  H  P  I  S  T  R  T  L  L  K  :  I  L  I  *  K  K  L  I  R  S  L  I  S  S  S  R  L  Q  S  R  K  :  V  L  L  H  L  R  K  K  K  S  S  A  F  L  V  E  R  L  K  R  K :   I  N  R  R  *  L  L  K  R  S  P  E  T  D  E  R  V  S  L  P  S  R  A  L  K  S  L  :  V  L  N  *  L  M  L  R  K  S  L  V  K  S  L  L  L  E  L  L  W  L  R :   A  R  L  K  R  S  R  S  M  F  K  G  T  Y  P  M  T  L  W  T  S  L  Q  K  P  G  Q  M :   F  Q  S  P  Q  Y  S  S  *  K  T  E  K  R  F  Q  L  H  K  L  R  R  *  H  P  C  S  Q  Q  S  V  S  Q  A  N  A  R  S  T  V  F  V  E  I  *  G  E  N  M  C  W  L  Y  R  C  G  Y  Y  G  S  T  L  Y  I  A  N  N  I  K  K  Q  R  N  T  S  Y  H  I  M  S  S  I  L  G  E  G  S  C  N  Q  S  I  R  L  A  *  D  R  G  V  V  V  F  L  A  F  *  A  H  P  I  T  N  G  F  *  C  E  V  N  F  V  E  P  K  K  L  H  L   : L  K  V  N  L  K  K  K  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24108" stop="24267"/>
                    <exon start="24404" stop="24466"/>
                    <exon start="26641" stop="26702"/>
                    <exon start="28157" stop="28238"/>
                    <exon start="28334" stop="28401"/>
                    <exon start="28479" stop="28562"/>
                    <exon start="28638" stop="28694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFALMAEKLQIVEVLYCGVCGLPAEYCEFGSEFEKCKPWLIQNAPDLYPDLVKDSNLKEADKVTDQLQSTSISEGSSTSKKEEVKRLPGGKIKKKDKQEIIIEKVTRNRRKSITTIKGLEIFGVKLTDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVDFITETWPDVPESAIFFIEDGKKVPAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24002" e_stop="24267"/>
            <exon e_start="24404" e_stop="24466"/>
            <exon e_start="26641" e_stop="27105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="24002" e_stop="24267" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24404" e_stop="24466" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26641" e_stop="27105" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24002" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24005" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24200" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="27105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG : ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG : GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</gDNA_template>
            <first_frame> K  I  L  *  G  E  K  D  V  V  V  L  R  D  D  S  S  S  S  F  S  E  F  I  G  A  T  N  R  S  F  F  F  S  L  S  F  C  F  N  G  G  K  A  S  N  S  *  G  S  I  L  W  S  L  R  F  T  C  *  V  L  *  I  R  I  R  I  *  E  M  Q  T  L  V  D  P  K  C  T  R  S  L  P  G  P  C  *  R :   F  *  F  E  R  S  *  *  G  H  *  S  A  P  V  D  F  N  L  G  R :   F  F  Y  I  *  E  R  R  S  Q  A  P  S  W  W  K  D  *  K  E  S  K  K  F  P  A  F  V  V  L  S  N  V  Y  *  S  F  F  Q  N  G  M  A  L  C  H  P  C  D  I  I  S  S  K  K  I  *  *  V  K  F  L  *  S  S  H  C  I  H  V  L  K  L  F  I  I  V  P  C  K  P  S  S  *  D  F  N  L  T  N  I  L  *  I  R  I  I  L  I  E  K  F  L  S  F  A  L  R  Y  *  V  T  N  L  G  Y  I  I  Y  I  Q  I  L  D  G  Y  Y  S  P  S  *  T  N  L  K  L  L  Y  F  V  W  V  F  P  A  M  *  I  C  K  R  P  K  *   </first_frame>
            <second_frame>  R  Y  S  K  G  K  K  T  S  S  F  Y  E  T  I  R  L  Q  V  S  A  N  L  S  E  Q  R  I  G  V  F  S  F  L  *  V  F  A  L  M  A  E  K  L  Q  I  V  E  V  L  Y  C  G  V  C  G  L  P  A  E  Y  C  E  F  G  S  E  F  E  K  C  K  P  W  L  I  Q  N  A  P  D  L  Y  P  D  L  V  K   : D  S  N  L  K  E  A  D  K  V  T  D  Q  L  Q  S  T  S  I  S  E   : G  S  S  T  S  K  K  E  E  V  K  R  L  P  G  G  K  I  K  K  K  V  R  N  F  Q  H  L  S  F  C  L  M  Y  I  N  P  S  F  K  M  A  W  L  C  A  I  H  V  I  L  *  A  L  R  K  F  D  K  *  S  S  C  N  P  P  I  V  F  M  Y  *  N  F  S  L  L  F  P  V  S  H  H  L  K  I  L  I  *  P  T  Y  Y  E  S  G  S  F  *  L  K  S  F  S  L  L  L  *  D  I  K  L  Q  I  L  V  I  S  F  I  F  K  Y  W  M  D  T  I  H  L  V  E  L  T  *  S  C  Y  I  L  Y  G  F  S  L  Q  C  E  Y  A  S  V  L  S  S  </second_frame>
            <third_frame>   D  T  L  R  G  K  R  R  R  R  F  T  R  R  F  V  F  K  F  Q  R  I  Y  R  S  N  E  S  E  F  F  L  F  F  E  F  L  L  *  W  R  K  S  F  K  *  L  R  F  Y  I  V  E  F  A  V  Y  L  L  S  I  V  N  S  D  P  N  L  R  N  A  N  P  G  *  S  K  M  H  P  I  S  T  R  T  L  L  K  :  I  L  I  *  K  K  L  I  R  S  L  I  S  S  S  R  L  Q  S  R  K  :  V  L  L  H  L  R  K  K  K  S  S  A  F  L  V  E  R  L  K  R  K  *  E  I  S  S  I  C  R  F  V  *  C  I  L  I  L  L  S  K  W  H  G  S  V  P  S  M  *  Y  Y  K  L  *  E  N  L  I  S  E  V  L  V  I  L  P  L  Y  S  C  T  K  T  F  H  Y  C  S  L  *  A  I  I  L  R  F  *  F  D  Q  H  I  M  N  Q  D  H  S  N  *  K  V  S  L  F  C  F  E  I  L  S  Y  K  S  W  L  Y  H  L  Y  S  N  I  G  W  I  L  F  T  *  L  N  *  L  E  A  V  I  F  C  M  G  F  P  C  N  V  N  M  Q  A  S  *  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24108" stop="24267"/>
                    <exon start="24404" stop="24466"/>
                    <exon start="26641" stop="26795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFALMAEKLQIVEVLYCGVCGLPAEYCEFGSEFEKCKPWLIQNAPDLYPDLVKDSNLKEADKVTDQLQSTSISEGSSTSKKEEVKRLPGGKIKKKVRNFQHLSFCLMYINPSFKMAWLCAIHVIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30191" PGL_stop="33236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30191" e_stop="30257"/>
            <exon e_start="31294" e_stop="31692"/>
            <exon e_start="32287" e_stop="32467"/>
            <exon e_start="32567" e_stop="32655"/>
            <exon e_start="32748" e_stop="32835"/>
            <exon e_start="32941" e_stop="33236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.731" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30191" e_stop="30257" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.731" acc_prob="0.989">
            <gDNA_intron_boundary i_start="30258" i_stop="31293" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31294" e_stop="31692" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32287" e_stop="32467" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.897">
            <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32567" e_stop="32655" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32748" e_stop="32835" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.785" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="32941" e_stop="33236" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30191" stop="30257"/>
              <exon start="31294" stop="31692"/>
              <exon start="32287" stop="32467"/>
              <exon start="32567" stop="32653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31396" stop="31692"/>
              <exon start="32287" stop="32467"/>
              <exon start="32567" stop="32655"/>
              <exon start="32748" stop="32835"/>
              <exon start="32941" stop="32991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31397" stop="31692"/>
              <exon start="32287" stop="32467"/>
              <exon start="32567" stop="32603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31621" stop="31692"/>
              <exon start="32287" stop="32467"/>
              <exon start="32567" stop="32655"/>
              <exon start="32748" stop="32835"/>
              <exon start="32941" stop="33236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32328" stop="32467"/>
              <exon start="32567" stop="32655"/>
              <exon start="32748" stop="32835"/>
              <exon start="32941" stop="33079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG : GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG : GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT : ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG : GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT : AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</gDNA_template>
            <first_frame> S  F  E  E  K  K  G  L  G  F  Y  F  L  I  F  T  T  F  C  D  I  *   : G  Y  K  A  F  L  V  S  C  *  K  E  L  G  R  *  L  F  D  R  I  A  L  K  E  H  I  W  K  L  L  Y  N  R  I  M  K  S  I  R  *  Q  G  R  I  R  *  I  *  G  T  V  I  Q  R  N  *  C  *  R  P  H  Y  H  S  R  I  W  F  K  T  *  I  Y  Q  N  G  T  K  K  R  R  E  Q  Q  F  H  Y  P  S  L  R  F  C  F  L  H  D  L  L  V  S  L  M  L  L  L  L  S  F  R  K  C  I  R  V  I  G  Q  E  E  I  L  Q  I  V  L  L  W  L  K  N  Y   : G  G  R  L  W  I  S  Q  L  S  N  G  V  L  F  R  S  S  T  W  R  N  R  K  L  L  Y  R  G  G  L  E  H  V  H  E  L  P  K  L  V  K  D  C  Q  K  M  K  K  L  R  N  L  L  C  S  I  G  *  K  L :   L  I  H  D  T  G  M  V  T  T  Y  T  S  T  T  I  Y  G  S  K  V  K  A  L  N  L  S  S  T   : G  W  M  L  E  T  G  K  R  *  I  S  R  S  V  L  G  S  I  C  S  I  N  A  S  S  I  *  D  L :   K  N  V  N  R  M  K  *  L  F  R  T  G  N  L  S  I  N  K  T  V  S  L  W  R  Q  *  R  V  Q  N  G  S  L  F  L  A  Q  Q  E  H  C  T  *  E  K  R  R  K  V  C  F  N  T  R  V  S  Y  R  V  V  Q  L  L  L  L  V  D  S  L  L  M  V  A  F  *  R  L  F  G  H  T  A  D  T  I  T  P  R  K  R  T  S  G  N  S  L  V  </first_frame>
            <second_frame>  H  L  K  K  K  K  G  W  D  F  I  F  S  S  L  Q  L  F  V  I  F  E  :  V  I  R  L  F  *  Y  L  A  K  K  N  L  G  D  D  C  S  I  E  *  L  *  R  N  T  F  G  N  Y  Y  T  I  E  *  *  S  R  *  D  D  K  E  E  F  D  K  F  K  E  L  *  S  K  E  T  D  V  R  D  H  I  I  I  Q  E  S  G  S  R  L  R  Y  I  R  M  E  R  K  K  D  E  S  N  S  F  I  T  R  A  F  D  S  V  F  S  T  T  C  *  *  A  *  C  C  C  C  *  A  S  E  S  V  *  E  L  *  D  K  K  K  S  C  R  L  C  C  C  G  *  R  T  M  :  V  E  G  F  G  F  R  S  S  Q  T  E  F  C  F  V  L  Q  R  G  E  T  G  N  C  C  I  A  V  G  *  S  T  Y  T  S  C  Q  S  W  *  R  I  V  K  R  *  K  S  S  E  T  C  S  A  A  L  A  R  S   : Y  *  S  T  T  P  V  W  S  Q  L  T  L  L  L  R  Y  M  V  R  K  *  K  L  S  T  F  L  L  L  :  V  G  C  W  R  R  E  R  D  K  S  R  E  V  S  *  V  Q  S  A  A  S  M  H  Q  V  S  R  T   : *  R  T  *  I  V  *  S  S  Y  S  G  R  E  T  C  L  *  T  K  R  C  L  C  G  D  S  R  G  F  K  M  D  L  C  S  *  H  N  K  N  I  V  R  R  K  K  E  E  R  C  V  S  T  L  E  F  P  I  G  W  C  N  Y  C  C  W  *  T  R  C  S  W  W  R  F  E  G  Y  L  A  I  Q  R  T  L  S  P  H  G  R  E  L  P  G  I  H  *  F </second_frame>
            <third_frame>   I  *  R  K  K  R  V  G  I  L  F  S  H  L  Y  N  F  L  *  Y  L  R :   L  *  G  F  F  S  I  L  L  K  R  T  W  E  M  T  V  R  S  N  S  F  K  G  T  H  L  E  T  I  I  Q  S  N  N  E  V  D  K  M  T  R  K  N  S  I  N  L  R  N  C  D  P  K  K  L  M  L  E  T  T  L  S  F  K  N  L  V  Q  D  L  D  I  S  E  W  N  E  K  K  T  R  A  T  V  S  L  P  E  P  S  I  L  F  S  P  R  P  V  S  E  L  D  A  A  A  V  K  L  Q  K  V  Y  K  S  Y  R  T  R  R  N  L  A  D  C  A  V  V  V  E  E  L  W :   W  K  A  L  D  F  A  A  L  K  R  S  S  V  S  F  F  N  V  E  K  P  E  T  A  V  S  R  W  A  R  A  R  T  R  A  A  K  V  G  K  G  L  S  K  D  E  K  A  Q  K  L  A  L  Q  H  W  L  E  A  :  I  D  P  R  H  R  Y  G  H  N  L  H  F  Y  Y  D  I  W  F  E  S  E  S  S  Q  P  F  F  Y  W :   L  D  V  G  D  G  K  E  I  N  L  E  K  C  P  R  F  N  L  Q  H  Q  C  I  K  Y  L  G  P  :  K  E  R  E  S  Y  E  V  V  I  Q  D  G  K  L  V  Y  K  Q  N  G  V  F  V  E  T  V  E  G  S  K  W  I  F  V  L  S  T  T  R  T  L  Y  V  G  K  K  K  K  G  V  F  Q  H  S  S  F  L  S  G  G  A  T  T  A  A  G  R  L  V  A  H  G  G  V  L  K  A  I  W  P  Y  S  G  H  Y  H  P  T  E  E  N  F  R  E  F  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31301" stop="31692"/>
                    <exon start="32287" stop="32467"/>
                    <exon start="32567" stop="32655"/>
                    <exon start="32748" stop="32835"/>
                    <exon start="32941" stop="33234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFSILLKRTWEMTVRSNSFKGTHLETIIQSNNEVDKMTRKNSINLRNCDPKKLMLETTLSFKNLVQDLDISEWNEKKTRATVSLPEPSILFSPRPVSELDAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNVEKPETAVSRWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDIWFESESSQPFFYWLDVGDGKEINLEKCPRFNLQHQCIKYLGPKERESYEVVIQDGKLVYKQNGVFVETVEGSKWIFVLSTTRTLYVGKKKKGVFQHSSFLSGGATTAAGRLVAHGGVLKAIWPYSGHYHPTEENFREFIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34147" PGL_stop="33815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34147" e_stop="33815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="34147" e_stop="33815" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34147" stop="33815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGAGCTATCATTTCAACTTCAATTCATTGATGCTAAAAAATATGAAAAAAATTGTACAAAAATGTTAATCAAAGCCATCATTGAAAACTTTGATAAAAGATGATTAATTAGGCTAAATGAAGCCATCTTGTACAAATAAATCAAACATGAATGAACGAATAAATAACGATTTTAGTTAGTTTGTTGCATCTACTTCTCCATCTTTAGTCAGAGGTCAGGATACTATAAACGAACAAGTGAACATGACTCGTGGTCCTGATCAAGCAAAAGAAATGGGTCGGATACTAAAACCTGTTTTCGAGACATCCATCATCAGCTGGTGCAAATGTA</gDNA_template>
            <first_frame> *  R  A  I  I  S  T  S  I  H  *  C  *  K  I  *  K  K  L  Y  K  N  V  N  Q  S  H  H  *  K  L  *  *  K  M  I  N  *  A  K  *  S  H  L  V  Q  I  N  Q  T  *  M  N  E  *  I  T  I  L  V  S  L  L  H  L  L  L  H  L  *  S  E  V  R  I  L  *  T  N  K  *  T  *  L  V  V  L  I  K  Q  K  K  W  V  G  Y  *  N  L  F  S  R  H  P  S  S  A  G  A  N  V </first_frame>
            <second_frame>  K  E  L  S  F  Q  L  Q  F  I  D  A  K  K  Y  E  K  N  C  T  K  M  L  I  K  A  I  I  E  N  F  D  K  R  *  L  I  R  L  N  E  A  I  L  Y  K  *  I  K  H  E  *  T  N  K  *  R  F  *  L  V  C  C  I  Y  F  S  I  F  S  Q  R  S  G  Y  Y  K  R  T  S  E  H  D  S  W  S  *  S  S  K  R  N  G  S  D  T  K  T  C  F  R  D  I  H  H  Q  L  V  Q  M   </second_frame>
            <third_frame>   K  S  Y  H  F  N  F  N  S  L  M  L  K  N  M  K  K  I  V  Q  K  C  *  S  K  P  S  L  K  T  L  I  K  D  D  *  L  G  *  M  K  P  S  C  T  N  K  S  N  M  N  E  R  I  N  N  D  F  S  *  F  V  A  S  T  S  P  S  L  V  R  G  Q  D  T  I  N  E  Q  V  N  M  T  R  G  P  D  Q  A  K  E  M  G  R  I  L  K  P  V  F  E  T  S  I  I  S  W  C  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0011D12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44526" PGL_stop="35899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44526" e_stop="44351"/>
            <exon e_start="44274" e_stop="43890"/>
            <exon e_start="42511" e_stop="42431"/>
            <exon e_start="41671" e_stop="41598"/>
            <exon e_start="41515" e_stop="41440"/>
            <exon e_start="41228" e_stop="41161"/>
            <exon e_start="40388" e_stop="40265"/>
            <exon e_start="40083" e_stop="39997"/>
            <exon e_start="39270" e_stop="39202"/>
            <exon e_start="39118" e_stop="38982"/>
            <exon e_start="38285" e_stop="38204"/>
            <exon e_start="38081" e_stop="38061"/>
            <exon e_start="37892" e_stop="37830"/>
            <exon e_start="36853" e_stop="36806"/>
            <exon e_start="36673" e_stop="36611"/>
            <exon e_start="36440" e_stop="36387"/>
            <exon e_start="36293" e_stop="35899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.215" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.545" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44526" e_stop="44351" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44274" e_stop="43890" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42511" e_stop="42431" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.881">
            <gDNA_intron_boundary i_start="42430" i_stop="41672" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41671" e_stop="41598" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.825" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41515" e_stop="41440" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.906">
            <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41228" e_stop="41161" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40388" e_stop="40265" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.761">
            <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40083" e_stop="39997" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.883" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39996" i_stop="39271" i_length="726"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39270" e_stop="39202" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39118" e_stop="38982" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.669">
            <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38285" e_stop="38204" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.215">
            <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38081" e_stop="38061" e_length="21"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.545">
            <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37892" e_stop="37830" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="36853" e_stop="36806" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.099">
            <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="36673" e_stop="36611" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.937" acc_prob="0.959">
            <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="36387" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="0.922">
            <gDNA_exon_boundary e_start="36293" e_stop="35899" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44526" stop="44351"/>
              <exon start="44274" stop="44057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44494" stop="44351"/>
              <exon start="44274" stop="43890"/>
              <exon start="42511" stop="42431"/>
              <exon start="41671" stop="41598"/>
              <exon start="41515" stop="41477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44443" stop="44351"/>
              <exon start="44274" stop="43890"/>
              <exon start="42511" stop="42431"/>
              <exon start="41671" stop="41598"/>
              <exon start="41515" stop="41440"/>
              <exon start="41228" stop="41164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44408" stop="44351"/>
              <exon start="44274" stop="43890"/>
              <exon start="42511" stop="42433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41613" stop="41598"/>
              <exon start="41515" stop="41440"/>
              <exon start="41228" stop="41161"/>
              <exon start="40388" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39270" stop="39202"/>
              <exon start="39118" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41613" stop="41598"/>
              <exon start="41515" stop="41440"/>
              <exon start="41228" stop="41161"/>
              <exon start="40388" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39270" stop="39202"/>
              <exon start="39118" stop="39004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39017" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37830"/>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG : ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG : AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG : TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG : TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT : GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG : GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG : GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG : GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG : TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG : GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG : TATTGGAGACTTTGGAATATG : CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG : GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG : CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG : ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT : GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</gDNA_template>
            <first_frame> H  E  I  L  V  L  D  F  R  *  *  R  N  F  *  T  A  M  V  *  I  Q  Q  T  N  K  Q  I  L  L  Q  I  S  I  F  M  A  A  G  S  S  T  R  I  F  L  C  I  L  Q  Q  L  L  L  *  S  Q  I  R :   L  D  T  M  T  I  N  P  E  S  I  T  S  S  S  D  G  N  N  N  L  R  R  R  R  S  G  G  G  G  G  D  R  S  V  N  D  V  T  E  L  D  S  S  S  V  D  A  S  S  S  S  D  D  V  T  S  D  V  M  D  G  S  G  N  G  G  L  D  R  V  S  E  A  V  S  T  T  I  G  K  I  S  D  G  D  G  I  Q  E  E  Q  R  K  A  N  E  T  T  P  L  K  Y  V  Y  R  A  S  A  P  A  H  R  R  N  K  E  S  P  L  S  S  A  A  I  F  K  Q  :  S  H  A  G  L  L  N  L  C  I  V  V  L  I  A  V  N  S  R  L  I  I  E  N  L  M  K  :  Y  G  L  L  I  G  S  G  F  W  S  S  S  T  S  V  R  D  W  P  L  L  M  C  C :   L  S  L  P  I  F  P  L  A  A  F  L  V  E  K  M  A  Q  K  K  Y  M  T  E  H  :  V  V  V  T  L  H  I  I  I  T  T  A  S  I  L  Y  P  V  L  V  I  L  R :   C  D  S  A  F  L  S  G  V  T  L  M  M  F  A  C  I  V  W  M  K  L  V  S  Y  A  H  T  N  Y  D  M  R  Q  L  A  K  S  V  N  E  :  G  E  N  S  E  I  N  Y  S  Y  N  V  S  F  E  S  L  A  Y  F  M  V  A  P  T  L  C  Y  Q  :  G  W  L  A  R  Q  L  I  K  L  V  I  F  T  G  L  M  G  F  I  I  E  Q  :  Y  I  N  P  I  V  R  S  S  R  H  P  F  E  G  N  L  L  Y  A  I  E  R  V  L  K  L  S  V  P  I  L  Y  V  W  L  C  M  F  Y  S  L  F  H  L  W :   L  N  I  L  A  E  V  L  R  F  G  D  R  E  F  Y  K  D  W  W  N  A  K  T  I  D  E  :  Y  W  R  L  W  N  M  :  P  V  H  K  W  M  V  R  H  I  Y  F  P  C  L  R  N  G  I  P  K  :  G  V  A  M  V  I  S  F  F  I  S  A  V  F  H  E  :  L  C  I  A  V  P  C  R  L  F  K  F  W  A  F  L  G  I  M  F  Q  :  I  P  L  V  I  L  T  N  F  L  Q  N  K  F  K  N  S  N  :  V  G  N  M  T  F  W  C  F  F  C  I  V  G  Q  P  M  C  V  L  L  Y  Y  H  D  V  M  N  R  N  G  S  S  S  *  S  F  I  V  D  H  F  V  G  P  R  L  T  S  E  Y  R  S  F  E  L  S  D  A  L  L  I  C  L  K  W  R  K  F  F  S  K  I  *  H  Q  G  I  E  Q  N  C  C  F  V  L  Y  L  S  F  D  I  *  E  M  Y  I  I  F  C  *  G  K  M  *  *  A  Q  I  S  D  S  V  L  I  S  N  F  P  Y  L  L  F  D  M  H  Y  R  Y  I  H   </first_frame>
            <second_frame>  T  R  Y  L  F  W  I  F  V  D  K  E  T  S  K  R  L  W  C  E  F  N  K  Q  I  N  K  S  F  C  K  S  Q  F  S  W  R  R  E  A  L  H  V  F  S  F  V  Y  F  N  N  C  F  Y  R  V  K  F   : D  L  I  R  *  R  S  I  R  R  V  L  H  R  Q  A  T  A  I  T  T  S  E  G  G  V  A  A  A  A  A  V  I  D  L  *  M  M  *  R  S  W  I  R  A  L  W  M  L  R  V  A  R  M  M  *  R  V  T  S  W  M  E  V  E  T  E  D  W  I  G  *  V  R  L  *  V  R  R  L  G  R  L  V  M  E  M  E  F  R  R  S  R  G  K  R  M  K  R  R  R  *  S  M  F  I  E  R  R  H  R  L  T  G  G  T  R  K  V  L  L  V  R  P  L  F  S  N  R :   V  M  L  A  Y  S  I  S  V  *  W  C  L  L  P  *  T  A  G  *  L  L  R  I  *  *  S :   M  A  C  *  L  G  Q  A  S  G  V  V  Q  H  Q  *  E  I  G  H  F  *  C  A   : V  L  V  F  R  F  S  L  L  L  L  F  L  S  R  K  W  H  R  R  S  I  *  L  N  M :   *  L  S  L  F  T  *  L  *  R  Q  L  P  F  C  I  Q  F  W  S  S  S   : G  V  I  L  L  F  Y  R  V  S  H  *  *  C  L  L  A  L  C  G  *  N  *  F  L  M  H  I  Q  I  M  I  *  D  S  L  Q  S  L  *  M  R :   V  R  I  P  K  S  T  T  L  T  M  L  V  S  R  V  W  L  T  S  W  L  L  Q  L  Y  A  I  R :   V  G  W  P  A  N  S  S  S  W  *  F  L  Q  D  *  W  D  L  S  L  S  S :   I  L  T  R  L  C  E  A  H  D  I  H  L  K  E  T  F  Y  T  P  S  R  G  Y  *  S  F  Q  F  Q  F  Y  M  S  G  S  A  C  S  T  A  S  F  I  F   : G  *  I  Y  L  R  K  F  C  D  L  G  I  V  S  S  I  K  I  G  G  T  Q  K  Q  L  M  S :   I  G  D  F  G  I  C :   L  Y  I  S  G  W  F  V  T  S  I  S  H  A  *  E  M  A  Y  L  R :   E  L  Q  W  *  S  L  S  L  Y  L  L  F  S  M  S :   C  V  L  L  F  L  V  G  Y  S  S  F  G  H  S  L  E  S  C  F  R :   F  P  W  S  Y  *  R  T  S  C  K  T  S  S  K  T  R  M :   W  A  T  *  H  S  G  A  F  S  A  L  L  V  N  Q  C  V  C  F  C  I  T  M  M  *  *  I  E  M  V  A  Q  V  K  A  S  S  S  I  I  L  L  D  R  D  S  L  V  S  I  A  V  L  N  Y  L  M  L  Y  L  Y  A  *  N  G  E  N  S  F  L  K  F  D  T  K  E  L  N  R  I  V  A  L  Y  Y  I  F  L  L  I  F  K  K  C  I  S  F  F  V  E  V  K  C  N  K  L  K  L  V  I  V  F  *  F  R  I  F  P  I  Y  Y  L  T  C  I  I  V  I  Y  I  </second_frame>
            <third_frame>   R  D  T  C  S  G  F  S  L  I  K  K  L  L  N  G  Y  G  V  N  S  T  N  K  *  T  N  P  S  A  N  L  N  F  H  G  G  G  K  L  Y  T  Y  F  P  L  Y  T  S  T  I  A  F  I  E  S  N  S  :  T  *  Y  D  D  D  Q  S  G  E  Y  Y  I  V  K  R  R  Q  *  Q  P  P  K  A  A  *  R  R  R  R  R  *  *  I  C  E  *  C  D  G  V  G  F  E  L  C  G  C  F  E  *  L  G  *  C  N  E  *  R  H  G  W  K  W  K  R  R  I  G  *  G  E  *  G  C  E  Y  D  D  W  E  D  *  *  W  R  W  N  S  G  G  A  E  E  S  E  *  N  D  A  V  E  V  C  L  *  S  V  G  T  G  S  P  A  E  Q  G  K  S  S  *  F  G  R  Y  F  Q  T   : E  S  C  W  L  T  Q  S  L  Y  S  G  A  Y  C  R  K  Q  Q  A  D  Y  *  E  F  D  E   : V  W  L  V  N  W  V  R  L  L  E  *  F  N  I  S  K  R  L  A  T  S  D  V  L  :  S  *  S  S  D  F  P  S  C  C  F  S  C  R  E  N  G  T  E  E  V  Y  D  *  T   : C  S  C  H  S  S  H  N  Y  N  D  S  F  H  F  V  S  S  S  G  H  P  Q  :  V  *  F  C  F  S  I  G  C  H  T  D  D  V  C  L  H  C  V  D  E  T  S  F  L  C  T  Y  K  L  *  Y  E  T  A  C  K  V  C  E  *   : G  *  E  F  R  N  Q  L  L  L  Q  C  *  F  R  E  F  G  L  L  H  G  C  S  N  F  M  L  S   : G  L  A  G  P  P  T  H  Q  A  G  N  F  Y  R  I  N  G  I  Y  H  *  A   : V  Y  *  P  D  C  A  K  L  T  T  S  I  *  R  K  P  F  I  R  H  R  E  G  I  E  A  F  S  S  N  F  I  C  L  A  L  H  V  L  Q  P  L  S  S  L  :  V  K  Y  T  C  G  S  S  A  I  W  G  S  *  V  L  *  R  L  V  E  R  K  N  N  *  *   : V  L  E  T  L  E  Y   : A  C  T  *  V  D  G  S  S  H  L  F  P  M  L  K  K  W  H  T  *   : G  S  C  N  G  D  L  F  L  Y  I  C  C  F  P  *   : A  V  Y  C  C  S  L  S  A  I  Q  V  L  G  I  P  W  N  H  V  S   : D  S  L  G  H  T  N  E  L  P  A  K  Q  V  Q  K  L  E   : C  G  Q  H  D  I  L  V  L  F  L  H  C  W  S  T  N  V  C  A  S  V  L  P  *  C  D  E  *  K  W  *  L  K  L  K  L  H  R  R  S  F  C  W  T  A  T  H  *  *  V  S  Q  F  *  T  I  *  C  F  T  Y  M  L  E  M  E  K  I  L  F  *  N  L  T  P  R  N  *  T  E  L  L  L  C  I  I  S  F  F  *  Y  L  R  N  V  Y  H  F  L  L  R  *  N  V  I  S  S  N  *  *  *  C  S  N  F  E  F  S  L  F  T  I  *  H  A  L  S  L  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44361" stop="44351"/>
                    <exon start="44274" stop="43890"/>
                    <exon start="42511" stop="42431"/>
                    <exon start="41671" stop="41598"/>
                    <exon start="41515" stop="41440"/>
                    <exon start="41228" stop="41161"/>
                    <exon start="40388" stop="40265"/>
                    <exon start="40083" stop="39997"/>
                    <exon start="39270" stop="39202"/>
                    <exon start="39118" stop="38982"/>
                    <exon start="38285" stop="38204"/>
                    <exon start="38081" stop="38061"/>
                    <exon start="37892" stop="37830"/>
                    <exon start="36853" stop="36806"/>
                    <exon start="36673" stop="36611"/>
                    <exon start="36440" stop="36387"/>
                    <exon start="36293" stop="36189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIRLDTMTINPESITSSSDGNNNLRRRRSGGGGGDRSVNDVTELDSSSVDASSSSDDVTSDVMDGSGNGGLDRVSEAVSTTIGKISDGDGIQEEQRKANETTPLKYVYRASAPAHRRNKESPLSSAAIFKQSHAGLLNLCIVVLIAVNSRLIIENLMKYGLLIGSGFWSSSTSVRDWPLLMCCLSLPIFPLAAFLVEKMAQKKYMTEHVVVTLHIIITTASILYPVLVILRCDSAFLSGVTLMMFACIVWMKLVSYAHTNYDMRQLAKSVNEGENSEINYSYNVSFESLAYFMVAPTLCYQGWLARQLIKLVIFTGLMGFIIEQYINPIVRSSRHPFEGNLLYAIERVLKLSVPILYVWLCMFYSLFHLWLNILAEVLRFGDREFYKDWWNAKTIDEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAMVISFFISAVFHELCIAVPCRLFKFWAFLGIMFQIPLVILTNFLQNKFKNSNVGNMTFWCFFCIVGQPMCVLLYYHDVMNRNGSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44526" e_stop="44351"/>
            <exon e_start="44274" e_stop="43890"/>
            <exon e_start="42511" e_stop="42431"/>
            <exon e_start="41722" e_stop="41598"/>
            <exon e_start="41515" e_stop="41440"/>
            <exon e_start="41228" e_stop="41161"/>
            <exon e_start="40388" e_stop="40265"/>
            <exon e_start="40083" e_stop="39997"/>
            <exon e_start="39303" e_stop="39202"/>
            <exon e_start="39118" e_stop="38982"/>
            <exon e_start="38285" e_stop="38204"/>
            <exon e_start="38081" e_stop="38061"/>
            <exon e_start="37892" e_stop="37830"/>
            <exon e_start="36853" e_stop="36806"/>
            <exon e_start="36673" e_stop="36611"/>
            <exon e_start="36440" e_stop="36387"/>
            <exon e_start="36293" e_stop="35899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.969" e_score="0.944"/>
          <exon-intron don_prob="0.991" acc_prob="0.906" e_score="0.961"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="0.985"/>
          <exon-intron don_prob="0.991" acc_prob="0.761" e_score="0.919"/>
          <exon-intron don_prob="0.883" acc_prob="0.803" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.215" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.545" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44526" e_stop="44351" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44274" e_stop="43890" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42511" e_stop="42431" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42430" i_stop="41723" i_length="708"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="41722" e_stop="41598" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.825" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="41515" e_stop="41440" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.906">
            <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="41228" e_stop="41161" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="40388" e_stop="40265" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.761">
            <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40083" e_stop="39997" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.883" acc_prob="0.803">
            <gDNA_intron_boundary i_start="39996" i_stop="39304" i_length="693"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39303" e_stop="39202" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39118" e_stop="38982" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.669">
            <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38285" e_stop="38204" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.215">
            <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38081" e_stop="38061" e_length="21"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.545">
            <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37892" e_stop="37830" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="36853" e_stop="36806" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.099">
            <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="36673" e_stop="36611" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.937" acc_prob="0.959">
            <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="36387" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="0.922">
            <gDNA_exon_boundary e_start="36293" e_stop="35899" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44526" stop="44351"/>
              <exon start="44274" stop="44057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44408" stop="44351"/>
              <exon start="44274" stop="43890"/>
              <exon start="42511" stop="42433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42510" stop="42431"/>
              <exon start="41722" stop="41598"/>
              <exon start="41515" stop="41440"/>
              <exon start="41228" stop="41161"/>
              <exon start="40388" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39303" stop="39202"/>
              <exon start="39118" stop="39057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40273" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39303" stop="39202"/>
              <exon start="39118" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37830"/>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="36258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40273" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39303" stop="39202"/>
              <exon start="39118" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37830"/>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39017" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37830"/>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG : ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG : AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG : AGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG : TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT : GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG : GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG : GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG : CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG : TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG : GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG : TATTGGAGACTTTGGAATATG : CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG : GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG : CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG : ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT : GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</gDNA_template>
            <first_frame> H  E  I  L  V  L  D  F  R  *  *  R  N  F  *  T  A  M  V  *  I  Q  Q  T  N  K  Q  I  L  L  Q  I  S  I  F  M  A  A  G  S  S  T  R  I  F  L  C  I  L  Q  Q  L  L  L  *  S  Q  I  R :   L  D  T  M  T  I  N  P  E  S  I  T  S  S  S  D  G  N  N  N  L  R  R  R  R  S  G  G  G  G  G  D  R  S  V  N  D  V  T  E  L  D  S  S  S  V  D  A  S  S  S  S  D  D  V  T  S  D  V  M  D  G  S  G  N  G  G  L  D  R  V  S  E  A  V  S  T  T  I  G  K  I  S  D  G  D  G  I  Q  E  E  Q  R  K  A  N  E  T  T  P  L  K  Y  V  Y  R  A  S  A  P  A  H  R  R  N  K  E  S  P  L  S  S  A  A  I  F  K  Q  :  S  H  A  G  L  L  N  L  C  I  V  V  L  I  A  V  N  S  R  L  I  I  E  N  L  M  K  :  R  V  L  G  V  H  V  A  L  T  I  F  *  L  L  L  Q  Y  G  L  L  I  G  S  G  F  W  S  S  S  T  S  V  R  D  W  P  L  L  M  C  C :   L  S  L  P  I  F  P  L  A  A  F  L  V  E  K  M  A  Q  K  K  Y  M  T  E  H  :  V  V  V  T  L  H  I  I  I  T  T  A  S  I  L  Y  P  V  L  V  I  L  R :   C  D  S  A  F  L  S  G  V  T  L  M  M  F  A  C  I  V  W  M  K  L  V  S  Y  A  H  T  N  Y  D  M  R  Q  L  A  K  S  V  N  E  :  G  E  N  S  E  I  N  Y  S  Y  N  V  S  F  E  S  L  A  Y  F  M  V  A  P  T  L  C  Y  Q  :  L  S  Y  P  R  S  A  S  I  R  K  G  W  L  A  R  Q  L  I  K  L  V  I  F  T  G  L  M  G  F  I  I  E  Q  :  Y  I  N  P  I  V  R  S  S  R  H  P  F  E  G  N  L  L  Y  A  I  E  R  V  L  K  L  S  V  P  I  L  Y  V  W  L  C  M  F  Y  S  L  F  H  L  W :   L  N  I  L  A  E  V  L  R  F  G  D  R  E  F  Y  K  D  W  W  N  A  K  T  I  D  E  :  Y  W  R  L  W  N  M  :  P  V  H  K  W  M  V  R  H  I  Y  F  P  C  L  R  N  G  I  P  K  :  G  V  A  M  V  I  S  F  F  I  S  A  V  F  H  E  :  L  C  I  A  V  P  C  R  L  F  K  F  W  A  F  L  G  I  M  F  Q  :  I  P  L  V  I  L  T  N  F  L  Q  N  K  F  K  N  S  N  :  V  G  N  M  T  F  W  C  F  F  C  I  V  G  Q  P  M  C  V  L  L  Y  Y  H  D  V  M  N  R  N  G  S  S  S  *  S  F  I  V  D  H  F  V  G  P  R  L  T  S  E  Y  R  S  F  E  L  S  D  A  L  L  I  C  L  K  W  R  K  F  F  S  K  I  *  H  Q  G  I  E  Q  N  C  C  F  V  L  Y  L  S  F  D  I  *  E  M  Y  I  I  F  C  *  G  K  M  *  *  A  Q  I  S  D  S  V  L  I  S  N  F  P  Y  L  L  F  D  M  H  Y  R  Y  I  H   </first_frame>
            <second_frame>  T  R  Y  L  F  W  I  F  V  D  K  E  T  S  K  R  L  W  C  E  F  N  K  Q  I  N  K  S  F  C  K  S  Q  F  S  W  R  R  E  A  L  H  V  F  S  F  V  Y  F  N  N  C  F  Y  R  V  K  F   : D  L  I  R  *  R  S  I  R  R  V  L  H  R  Q  A  T  A  I  T  T  S  E  G  G  V  A  A  A  A  A  V  I  D  L  *  M  M  *  R  S  W  I  R  A  L  W  M  L  R  V  A  R  M  M  *  R  V  T  S  W  M  E  V  E  T  E  D  W  I  G  *  V  R  L  *  V  R  R  L  G  R  L  V  M  E  M  E  F  R  R  S  R  G  K  R  M  K  R  R  R  *  S  M  F  I  E  R  R  H  R  L  T  G  G  T  R  K  V  L  L  V  R  P  L  F  S  N  R :   V  M  L  A  Y  S  I  S  V  *  W  C  L  L  P  *  T  A  G  *  L  L  R  I  *  *  R :   G  F  L  V  F  M  L  H  *  Q  Y  S  D  Y  Y  C  S  M  A  C  *  L  G  Q  A  S  G  V  V  Q  H  Q  *  E  I  G  H  F  *  C  A   : V  L  V  F  R  F  S  L  L  L  L  F  L  S  R  K  W  H  R  R  S  I  *  L  N  M :   *  L  S  L  F  T  *  L  *  R  Q  L  P  F  C  I  Q  F  W  S  S  S   : G  V  I  L  L  F  Y  R  V  S  H  *  *  C  L  L  A  L  C  G  *  N  *  F  L  M  H  I  Q  I  M  I  *  D  S  L  Q  S  L  *  M  R :   V  R  I  P  K  S  T  T  L  T  M  L  V  S  R  V  W  L  T  S  W  L  L  Q  L  Y  A  I  S :   L  A  I  L  A  L  H  P  F  G  R  V  G  W  P  A  N  S  S  S  W  *  F  L  Q  D  *  W  D  L  S  L  S  S :   I  L  T  R  L  C  E  A  H  D  I  H  L  K  E  T  F  Y  T  P  S  R  G  Y  *  S  F  Q  F  Q  F  Y  M  S  G  S  A  C  S  T  A  S  F  I  F   : G  *  I  Y  L  R  K  F  C  D  L  G  I  V  S  S  I  K  I  G  G  T  Q  K  Q  L  M  S :   I  G  D  F  G  I  C :   L  Y  I  S  G  W  F  V  T  S  I  S  H  A  *  E  M  A  Y  L  R :   E  L  Q  W  *  S  L  S  L  Y  L  L  F  S  M  S :   C  V  L  L  F  L  V  G  Y  S  S  F  G  H  S  L  E  S  C  F  R :   F  P  W  S  Y  *  R  T  S  C  K  T  S  S  K  T  R  M :   W  A  T  *  H  S  G  A  F  S  A  L  L  V  N  Q  C  V  C  F  C  I  T  M  M  *  *  I  E  M  V  A  Q  V  K  A  S  S  S  I  I  L  L  D  R  D  S  L  V  S  I  A  V  L  N  Y  L  M  L  Y  L  Y  A  *  N  G  E  N  S  F  L  K  F  D  T  K  E  L  N  R  I  V  A  L  Y  Y  I  F  L  L  I  F  K  K  C  I  S  F  F  V  E  V  K  C  N  K  L  K  L  V  I  V  F  *  F  R  I  F  P  I  Y  Y  L  T  C  I  I  V  I  Y  I  </second_frame>
            <third_frame>   R  D  T  C  S  G  F  S  L  I  K  K  L  L  N  G  Y  G  V  N  S  T  N  K  *  T  N  P  S  A  N  L  N  F  H  G  G  G  K  L  Y  T  Y  F  P  L  Y  T  S  T  I  A  F  I  E  S  N  S  :  T  *  Y  D  D  D  Q  S  G  E  Y  Y  I  V  K  R  R  Q  *  Q  P  P  K  A  A  *  R  R  R  R  R  *  *  I  C  E  *  C  D  G  V  G  F  E  L  C  G  C  F  E  *  L  G  *  C  N  E  *  R  H  G  W  K  W  K  R  R  I  G  *  G  E  *  G  C  E  Y  D  D  W  E  D  *  *  W  R  W  N  S  G  G  A  E  E  S  E  *  N  D  A  V  E  V  C  L  *  S  V  G  T  G  S  P  A  E  Q  G  K  S  S  *  F  G  R  Y  F  Q  T   : E  S  C  W  L  T  Q  S  L  Y  S  G  A  Y  C  R  K  Q  Q  A  D  Y  *  E  F  D  E   : E  G  S  W  C  S  C  C  T  D  N  I  L  T  T  I  A  V  W  L  V  N  W  V  R  L  L  E  *  F  N  I  S  K  R  L  A  T  S  D  V  L  :  S  *  S  S  D  F  P  S  C  C  F  S  C  R  E  N  G  T  E  E  V  Y  D  *  T   : C  S  C  H  S  S  H  N  Y  N  D  S  F  H  F  V  S  S  S  G  H  P  Q  :  V  *  F  C  F  S  I  G  C  H  T  D  D  V  C  L  H  C  V  D  E  T  S  F  L  C  T  Y  K  L  *  Y  E  T  A  C  K  V  C  E  *   : G  *  E  F  R  N  Q  L  L  L  Q  C  *  F  R  E  F  G  L  L  H  G  C  S  N  F  M  L  S   : A  *  L  S  S  L  C  I  H  S  E  G  L  A  G  P  P  T  H  Q  A  G  N  F  Y  R  I  N  G  I  Y  H  *  A   : V  Y  *  P  D  C  A  K  L  T  T  S  I  *  R  K  P  F  I  R  H  R  E  G  I  E  A  F  S  S  N  F  I  C  L  A  L  H  V  L  Q  P  L  S  S  L  :  V  K  Y  T  C  G  S  S  A  I  W  G  S  *  V  L  *  R  L  V  E  R  K  N  N  *  *   : V  L  E  T  L  E  Y   : A  C  T  *  V  D  G  S  S  H  L  F  P  M  L  K  K  W  H  T  *   : G  S  C  N  G  D  L  F  L  Y  I  C  C  F  P  *   : A  V  Y  C  C  S  L  S  A  I  Q  V  L  G  I  P  W  N  H  V  S   : D  S  L  G  H  T  N  E  L  P  A  K  Q  V  Q  K  L  E   : C  G  Q  H  D  I  L  V  L  F  L  H  C  W  S  T  N  V  C  A  S  V  L  P  *  C  D  E  *  K  W  *  L  K  L  K  L  H  R  R  S  F  C  W  T  A  T  H  *  *  V  S  Q  F  *  T  I  *  C  F  T  Y  M  L  E  M  E  K  I  L  F  *  N  L  T  P  R  N  *  T  E  L  L  L  C  I  I  S  F  F  *  Y  L  R  N  V  Y  H  F  L  L  R  *  N  V  I  S  S  N  *  *  *  C  S  N  F  E  F  S  L  F  T  I  *  H  A  L  S  L  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41683" stop="41598"/>
                    <exon start="41515" stop="41440"/>
                    <exon start="41228" stop="41161"/>
                    <exon start="40388" stop="40265"/>
                    <exon start="40083" stop="39997"/>
                    <exon start="39303" stop="39202"/>
                    <exon start="39118" stop="38982"/>
                    <exon start="38285" stop="38204"/>
                    <exon start="38081" stop="38061"/>
                    <exon start="37892" stop="37830"/>
                    <exon start="36853" stop="36806"/>
                    <exon start="36673" stop="36611"/>
                    <exon start="36440" stop="36387"/>
                    <exon start="36293" stop="36189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLQYGLLIGSGFWSSSTSVRDWPLLMCCLSLPIFPLAAFLVEKMAQKKYMTEHVVVTLHIIITTASILYPVLVILRCDSAFLSGVTLMMFACIVWMKLVSYAHTNYDMRQLAKSVNEGENSEINYSYNVSFESLAYFMVAPTLCYQLSYPRSASIRKGWLARQLIKLVIFTGLMGFIIEQYINPIVRSSRHPFEGNLLYAIERVLKLSVPILYVWLCMFYSLFHLWLNILAEVLRFGDREFYKDWWNAKTIDEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAMVISFFISAVFHELCIAVPCRLFKFWAFLGIMFQIPLVILTNFLQNKFKNSNVGNMTFWCFFCIVGQPMCVLLYYHDVMNRNGSSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44361" stop="44351"/>
                    <exon start="44274" stop="43890"/>
                    <exon start="42511" stop="42431"/>
                    <exon start="41722" stop="41684"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIRLDTMTINPESITSSSDGNNNLRRRRSGGGGGDRSVNDVTELDSSSVDASSSSDDVTSDVMDGSGNGGLDRVSEAVSTTIGKISDGDGIQEEQRKANETTPLKYVYRASAPAHRRNKESPLSSAAIFKQSHAGLLNLCIVVLIAVNSRLIIENLMKRVLGVHVALTIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49544" PGL_stop="54946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49544" e_stop="50050"/>
            <exon e_start="50957" e_stop="51128"/>
            <exon e_start="51845" e_stop="51980"/>
            <exon e_start="52093" e_stop="52203"/>
            <exon e_start="52283" e_stop="52385"/>
            <exon e_start="52702" e_stop="52845"/>
            <exon e_start="52942" e_stop="53049"/>
            <exon e_start="53136" e_stop="53232"/>
            <exon e_start="53457" e_stop="53582"/>
            <exon e_start="53796" e_stop="53928"/>
            <exon e_start="54553" e_stop="54946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.424" acc_prob="0.598" e_score="0.988"/>
          <exon-intron don_prob="0.976" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.989" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.513" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.459" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="49544" e_stop="50050" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.424" acc_prob="0.598">
            <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50957" e_stop="51128" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51845" e_stop="51980" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.924">
            <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="52093" e_stop="52203" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="52283" e_stop="52385" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="52702" e_stop="52845" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52942" e_stop="53049" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.838">
            <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53136" e_stop="53232" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53457" e_stop="53582" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.705" acc_prob="0.513">
            <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53796" e_stop="53928" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.459">
            <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="54553" e_stop="54946" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49544" stop="50050"/>
              <exon start="50957" stop="51128"/>
              <exon start="51845" stop="51939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49548" stop="49903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49566" stop="49920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49610" stop="50050"/>
              <exon start="50957" stop="51128"/>
              <exon start="51845" stop="51901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49757" stop="50050"/>
              <exon start="50957" stop="51128"/>
              <exon start="51845" stop="51980"/>
              <exon start="52093" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53928"/>
              <exon start="54553" stop="54826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51845" stop="51980"/>
              <exon start="52093" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53928"/>
              <exon start="54553" stop="54946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52169" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="53928"/>
              <exon start="54553" stop="54936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTATAACTTATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG : TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG : ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG : GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAG : GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG : GTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG : GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG : GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG : GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG : CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG : GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACAATATTGCTAG</gDNA_template>
            <first_frame> P  Y  N  L  F  S  L  F  S  S  I  Q  K  K  T  A  K  F  P  K  S  I  S  N  *  S  S  I  L  A  N  F  F  K  I  F  Q  F  S  N  T  Q  L  T  K  I  M  E  K  D  L  R  F  *  T  F  L  K  K  K  E  A  K  K  L  R  *  K  G  I  Y  L  K  M  E  C  V  G  A  Q  N  V  G  A  M  A  V  F  T  R  P  R  L  K  P  L  V  G  R  R  V  M  P  R  K  K  Q  S  F  W  R  M  S  S  M  K  V  K  C  N  S  S  S  G  S  D  S  C  V  V  D  K  E  D  F  A  D  E  E  D  Y  I  K  A  G  G  S  Q  L  V  F  V  Q  M  Q  Q  K  K  D  M  D  Q  Q  S  K  L  S  D  E  :  L  R  Q  I  S  A  G  Q  T  V  L  D  L  V  V  I  G  C  G  P  A  G  L  A  L  A  A  E  S  A  K  L  G  L  N  V  G  L  V  G  P  D  L  P  F  T  N  N  Y  G  V  W  E  D  E  F  K   : D  L  G  L  Q  A  C  I  E  H  V  W  R  D  T  I  V  Y  L  D  D  D  E  P  I  L  I  G  R  A  Y  G  R  V  S  R  H  F  L  H  E  E  L  L  K  R :   C  V  E  A  G  V  L  Y  L  N  S  K  V  D  R  I  V  E  A  T  N  G  Q  S  L  V  E  C  E  G  D  V  V  I  P  C  R :   F  V  T  V  A  S  G  A  A  S  G  K  F  L  Q  Y  E  L  G  G  P  R  V  S  V  Q  T  A  Y  G  V  E  V  E  :  V  D  N  N  P  F  D  P  S  L  M  V  F  M  D  Y  R  D  Y  V  R  H  D  A  Q  S  L  E  A  K  Y  P  T  F  L  Y  A  M  P  M  S  P  T  R  V  F  F  E  :  E  T  C  L  A  S  K  D  A  M  P  F  D  L  L  K  K  K  L  M  L  R  L  N  T  L  G  V  R  I  K  E  I  Y  E  E  :  E  W  S  Y  I  P  V  G  G  S  L  P  N  T  E  Q  K  T  L  A  F  G  A  A  A  S  M  V  H  P  A  T   : G  Y  S  V  V  R  S  L  S  E  A  P  K  C  A  S  V  L  A  N  I  L  R  Q  H  Y  S  K  N  M  L  T  S  S  S  I  P  S  I  S  T  Q   : A  W  N  T  L  W  P  Q  E  R  K  R  Q  R  S  F  F  L  F  G  L  A  L  I  L  Q  L  D  I  E  G  I  R  S  F  F  R  A  F  F  R  V  P  K  W :   M  W  Q  G  F  L  G  S  S  L  S  S  A  D  L  M  L  F  A  F  Y  M  F  I  I  A  P  N  D  M  R  K  G  L  I  R  H  L  L  S  D  P  T  G  A  T  L  I  R  T  Y  L  T  F  *  S  K  L  L  L  Q  *  L  L  N  Q  R  P  H  Y  F  R  F  I  T  E  I  A  V  S  R  G  I  V  Y  N  I  F  T  S  L  I  C  L  N  K  L  H  S  F  S  F  C  I  C  F  F  F  C  P  R  S  C  I  D  P  I  Y  I  H  C  Q  Y  I  *  I  L  Q  Y  C  * </first_frame>
            <second_frame>  R  I  T  Y  S  L  C  F  P  P  S  K  K  K  Q  Q  N  S  Q  N  L  Y  Q  I  N  L  Q  F  L  Q  I  S  S  R  F  F  S  F  R  T  P  N  *  L  K  *  W  K  K  I  S  D  F  E  H  F  *  R  K  K  K  Q  R  S  *  D  K  R  G  Y  T  *  K  W  S  V  L  E  L  K  M  L  E  Q  W  Q  F  L  R  V  R  D  *  N  R  W  S  G  G  E  L  C  Q  E  K  S  N  L  F  G  V  *  A  V  *  K  *  N  V  I  A  V  V  V  V  T  V  V  *  L  I  K  K  I  L  L  M  K  K  I  I  *  K  P  V  V  R  N  L  Y  L  F  K  C  S  R  K  K  I  W  I  S  S  L  S  F  L  M  S :   Y  D  K  Y  L  L  D  K  P  Y  W  I  *  W  *  S  A  V  V  L  L  V  L  L  L  P  R  S  Q  L  N  W  G  *  T  W  G  S  L  G  L  I  F  L  S  Q  T  T  M  V  Y  G  R  T  S  S  K  :  I  L  V  F  K  P  A  L  N  M  F  G  G  I  P  L  Y  I  L  M  M  M  N  L  F  L  L  A  V  P  M  E  E  L  V  A  I  F  C  T  R  S  Y  S  K   : G  V  W  R  Q  V  F  C  I  *  T  R  K  W  I  G  L  L  R  P  Q  M  A  R  V  L  *  S  A  R  V  M  L  *  F  P  A   : G  L  *  L  L  H  R  G  Q  P  R  G  N  S  C  S  M  S  W  E  V  L  E  F  L  F  K  Q  L  M  E  W  K  L  R :   L  I  T  I  H  L  T  R  A  *  W  F  S  W  I  I  E  I  M  S  D  T  T  L  N  L  *  K  L  N  I  Q  H  F  F  M  P  C  P  C  L  Q  H  E  S  F  S  R :   K  L  V  W  L  Q  K  M  Q  C  H  S  I  C  *  R  K  N  *  C  Y  D  *  T  P  L  V  *  E  L  K  K  F  T  R  R :   N  G  L  T  Y  R  L  V  D  L  C  Q  I  Q  N  K  K  H  L  H  L  V  L  L  L  A  W  F  I  Q  P  Q  :  V  I  Q  S  S  D  H  F  L  K  L  Q  N  A  P  L  Y  L  Q  I  Y  Y  D  N  I  I  A  R  T  C  L  P  V  Q  V  S  R  V  Y  Q  L  K  :  L  G  T  L  F  G  H  K  N  E  N  D  K  D  R  F  S  Y  L  D  W  L  *  Y  C  S  W  I  L  R  G  *  G  H  F  S  A  H  S  S  V  C  Q  N   : G  C  G  R  D  F  L  V  Q  V  F  L  Q  Q  T  S  C  Y  L  P  S  T  C  L  L  L  H  Q  M  T  *  E  K  A  *  S  D  I  F  Y  L  I  L  L  V  Q  H  *  *  E  L  I  L  H  F  R  V  N  S  S  Y  N  N  C  *  I  R  G  L  I  T  S  D  S  *  Q  K  S  R  S  L  E  A  L  Y  I  T  F  S  L  A  *  Y  A  *  I  S  C  I  V  S  V  F  V  S  A  S  F  F  V  L  D  H  V  L  I  Q  S  I  Y  I  A  N  I  Y  K  F  Y  N  I  A   </second_frame>
            <third_frame>   V  *  L  I  L  S  V  F  L  H  P  K  K  N  S  K  I  P  K  I  Y  I  K  L  I  F  N  S  C  K  F  L  Q  D  F  S  V  F  E  H  P  I  D  *  N  N  G  K  R  S  Q  I  L  N  I  F  E  E  K  R  S  K  E  A  K  I  K  G  D  I  L  E  N  G  V  C  W  S  S  K  C  W  S  N  G  S  F  Y  A  S  E  I  E  T  V  G  R  E  E  S  Y  A  K  K  K  A  I  F  L  A  Y  E  Q  Y  E  S  K  M  *  *  Q  *  W  *  *  Q  L  C  S  *  *  R  R  F  C  *  *  R  R  L  Y  K  S  R  W  F  A  T  C  I  C  S  N  A  A  E  K  R  Y  G  S  A  V  *  A  F  *  *   : V  T  T  N  I  C  W  T  N  R  T  G  F  S  G  N  R  L  W  S  C  W  S  C  S  C  R  G  V  S  *  I  G  V  E  R  G  A  R  W  A  *  S  S  F  H  K  Q  L  W  C  M  G  G  R  V  Q  R :   S  W  S  S  S  L  H  *  T  C  L  A  G  Y  H  C  I  S  *  *  *  *  T  Y  S  Y  W  P  C  L  W  K  S  *  S  P  F  S  A  R  G  V  T  Q  K  :  V  C  G  G  R  C  F  V  S  K  L  E  S  G  *  D  C  *  G  H  K  W  P  E  S  C  R  V  R  G  *  C  C  D  S  L  Q  :  V  C  D  C  C  I  G  G  S  L  G  E  I  L  A  V  *  V  G  R  S  *  S  F  C  S  N  S  L  W  S  G  S  *   : G  *  *  Q  S  I  *  P  E  P  D  G  F  H  G  L  *  R  L  C  Q  T  R  R  S  I  F  R  S  *  I  S  N  I  S  L  C  H  A  H  V  S  N  T  S  L  F  R   : G  N  L  F  G  F  K  R  C  N  A  I  R  S  V  K  E  K  T  D  A  T  I  E  H  P  W  C  K  N  *  R  N  L  R  G   : G  M  V  L  H  T  G  W  W  I  F  A  K  Y  R  T  K  N  T  C  I  W  C  C  C  *  H  G  S  S  S  H  R :   L  F  S  R  Q  I  T  F  *  S  S  K  M  R  L  C  T  C  K  Y  I  T  T  T  L  *  Q  E  H  A  Y  Q  F  K  Y  P  E  Y  I  N  S  S :   L  E  H  S  L  A  T  R  T  K  T  T  K  I  V  F  P  I  W  T  G  S  D  I  A  A  G  Y  *  G  D  K  V  I  F  P  R  I  L  P  C  A  K  M  :  D  V  A  G  I  S  W  F  K  S  F  F  S  R  P  H  V  I  C  L  L  H  V  Y  Y  C  T  K  *  H  E  K  R  L  D  Q  T  S  F  I  *  S  Y  W  C  N  I  D  K  N  L  S  Y  I  L  E  *  T  P  P  T  I  I  V  E  S  E  A  S  L  L  Q  I  H  N  R  N  R  G  L  S  R  H  C  I  *  H  F  H  *  L  N  M  L  E  *  V  A  *  F  Q  F  L  Y  L  L  L  F  L  S  *  I  M  Y  *  S  N  L  Y  T  L  P  I  Y  I  N  F  T  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49745" stop="50050"/>
                    <exon start="50957" stop="51128"/>
                    <exon start="51845" stop="51980"/>
                    <exon start="52093" stop="52203"/>
                    <exon start="52283" stop="52385"/>
                    <exon start="52702" stop="52845"/>
                    <exon start="52942" stop="53049"/>
                    <exon start="53136" stop="53232"/>
                    <exon start="53457" stop="53582"/>
                    <exon start="53796" stop="53928"/>
                    <exon start="54553" stop="54718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGIYLKMECVGAQNVGAMAVFTRPRLKPLVGRRVMPRKKQSFWRMSSMKVKCNSSSGSDSCVVDKEDFADEEDYIKAGGSQLVFVQMQQKKDMDQQSKLSDELRQISAGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLVGPDLPFTNNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASGAASGKFLQYELGGPRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRDYVRHDAQSLEAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50822" e_stop="51128"/>
            <exon e_start="51845" e_stop="51980"/>
            <exon e_start="52093" e_stop="52203"/>
            <exon e_start="52283" e_stop="52385"/>
            <exon e_start="52702" e_stop="52845"/>
            <exon e_start="52942" e_stop="53049"/>
            <exon e_start="53136" e_stop="53232"/>
            <exon e_start="53457" e_stop="53582"/>
            <exon e_start="53796" e_stop="53928"/>
            <exon e_start="54553" e_stop="54946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="0.989" acc_prob="0.838" e_score="0.981"/>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="0.705" acc_prob="0.513" e_score="0.937"/>
          <exon-intron don_prob="0.996" acc_prob="0.459" e_score="0.992"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="50822" e_stop="51128" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51845" e_stop="51980" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.924">
            <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="52093" e_stop="52203" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="52283" e_stop="52385" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="52702" e_stop="52845" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="52942" e_stop="53049" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.838">
            <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="53136" e_stop="53232" e_length="97"/>
          </exon>
          <intron i_serial="7" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="0.937">
            <gDNA_exon_boundary e_start="53457" e_stop="53582" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.705" acc_prob="0.513">
            <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="53796" e_stop="53928" e_length="133"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.459">
            <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="54553" e_stop="54946" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50822" stop="51128"/>
              <exon start="51845" stop="51980"/>
              <exon start="52093" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51845" stop="51980"/>
              <exon start="52093" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53928"/>
              <exon start="54553" stop="54946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52169" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="53928"/>
              <exon start="54553" stop="54936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG : ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG : GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAG : GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG : GTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG : GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG : GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG : GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG : CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG : GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACAATATTGCTAG</gDNA_template>
            <first_frame> I  P  Y  K  D  R  G  K  V  C  V  H  T  T  L  L  G  P  H  L  W  D  Y  T  E  Y  V  V  V  L  *  H  T  I  L  L  C  S  S  Y  Y  L  S  L  Q  L  R  Q  I  S  A  G  Q  T  V  L  D  L  V  V  I  G  C  G  P  A  G  L  A  L  A  A  E  S  A  K  L  G  L  N  V  G  L  V  G  P  D  L  P  F  T  N  N  Y  G  V  W  E  D  E  F  K   : D  L  G  L  Q  A  C  I  E  H  V  W  R  D  T  I  V  Y  L  D  D  D  E  P  I  L  I  G  R  A  Y  G  R  V  S  R  H  F  L  H  E  E  L  L  K  R :   C  V  E  A  G  V  L  Y  L  N  S  K  V  D  R  I  V  E  A  T  N  G  Q  S  L  V  E  C  E  G  D  V  V  I  P  C  R :   F  V  T  V  A  S  G  A  A  S  G  K  F  L  Q  Y  E  L  G  G  P  R  V  S  V  Q  T  A  Y  G  V  E  V  E  :  V  D  N  N  P  F  D  P  S  L  M  V  F  M  D  Y  R  D  Y  V  R  H  D  A  Q  S  L  E  A  K  Y  P  T  F  L  Y  A  M  P  M  S  P  T  R  V  F  F  E  :  E  T  C  L  A  S  K  D  A  M  P  F  D  L  L  K  K  K  L  M  L  R  L  N  T  L  G  V  R  I  K  E  I  Y  E  E  :  E  W  S  Y  I  P  V  G  G  S  L  P  N  T  E  Q  K  T  L  A  F  G  A  A  A  S  M  V  H  P  A  T   : G  Y  S  V  V  R  S  L  S  E  A  P  K  C  A  S  V  L  A  N  I  L  R  Q  H  Y  S  K  N  M  L  T  S  S  S  I  P  S  I  S  T  Q   : A  W  N  T  L  W  P  Q  E  R  K  R  Q  R  S  F  F  L  F  G  L  A  L  I  L  Q  L  D  I  E  G  I  R  S  F  F  R  A  F  F  R  V  P  K  W :   M  W  Q  G  F  L  G  S  S  L  S  S  A  D  L  M  L  F  A  F  Y  M  F  I  I  A  P  N  D  M  R  K  G  L  I  R  H  L  L  S  D  P  T  G  A  T  L  I  R  T  Y  L  T  F  *  S  K  L  L  L  Q  *  L  L  N  Q  R  P  H  Y  F  R  F  I  T  E  I  A  V  S  R  G  I  V  Y  N  I  F  T  S  L  I  C  L  N  K  L  H  S  F  S  F  C  I  C  F  F  F  C  P  R  S  C  I  D  P  I  Y  I  H  C  Q  Y  I  *  I  L  Q  Y  C  * </first_frame>
            <second_frame>  Y  L  T  K  I  G  V  R  F  A  Y  I  P  P  S  S  D  H  T  C  G  I  T  L  S  M  L  L  Y  C  S  I  L  Y  C  F  V  H  H  T  I  S  A  C  S  Y  D  K  Y  L  L  D  K  P  Y  W  I  *  W  *  S  A  V  V  L  L  V  L  L  L  P  R  S  Q  L  N  W  G  *  T  W  G  S  L  G  L  I  F  L  S  Q  T  T  M  V  Y  G  R  T  S  S  K  :  I  L  V  F  K  P  A  L  N  M  F  G  G  I  P  L  Y  I  L  M  M  M  N  L  F  L  L  A  V  P  M  E  E  L  V  A  I  F  C  T  R  S  Y  S  K   : G  V  W  R  Q  V  F  C  I  *  T  R  K  W  I  G  L  L  R  P  Q  M  A  R  V  L  *  S  A  R  V  M  L  *  F  P  A   : G  L  *  L  L  H  R  G  Q  P  R  G  N  S  C  S  M  S  W  E  V  L  E  F  L  F  K  Q  L  M  E  W  K  L  R :   L  I  T  I  H  L  T  R  A  *  W  F  S  W  I  I  E  I  M  S  D  T  T  L  N  L  *  K  L  N  I  Q  H  F  F  M  P  C  P  C  L  Q  H  E  S  F  S  R :   K  L  V  W  L  Q  K  M  Q  C  H  S  I  C  *  R  K  N  *  C  Y  D  *  T  P  L  V  *  E  L  K  K  F  T  R  R :   N  G  L  T  Y  R  L  V  D  L  C  Q  I  Q  N  K  K  H  L  H  L  V  L  L  L  A  W  F  I  Q  P  Q  :  V  I  Q  S  S  D  H  F  L  K  L  Q  N  A  P  L  Y  L  Q  I  Y  Y  D  N  I  I  A  R  T  C  L  P  V  Q  V  S  R  V  Y  Q  L  K  :  L  G  T  L  F  G  H  K  N  E  N  D  K  D  R  F  S  Y  L  D  W  L  *  Y  C  S  W  I  L  R  G  *  G  H  F  S  A  H  S  S  V  C  Q  N   : G  C  G  R  D  F  L  V  Q  V  F  L  Q  Q  T  S  C  Y  L  P  S  T  C  L  L  L  H  Q  M  T  *  E  K  A  *  S  D  I  F  Y  L  I  L  L  V  Q  H  *  *  E  L  I  L  H  F  R  V  N  S  S  Y  N  N  C  *  I  R  G  L  I  T  S  D  S  *  Q  K  S  R  S  L  E  A  L  Y  I  T  F  S  L  A  *  Y  A  *  I  S  C  I  V  S  V  F  V  S  A  S  F  F  V  L  D  H  V  L  I  Q  S  I  Y  I  A  N  I  Y  K  F  Y  N  I  A   </second_frame>
            <third_frame>   T  L  Q  R  *  G  *  G  L  R  T  Y  H  P  P  R  T  T  L  V  G  L  H  *  V  C  C  C  T  V  A  Y  Y  I  A  L  F  I  I  L  S  Q  L  A  V  T  T  N  I  C  W  T  N  R  T  G  F  S  G  N  R  L  W  S  C  W  S  C  S  C  R  G  V  S  *  I  G  V  E  R  G  A  R  W  A  *  S  S  F  H  K  Q  L  W  C  M  G  G  R  V  Q  R :   S  W  S  S  S  L  H  *  T  C  L  A  G  Y  H  C  I  S  *  *  *  *  T  Y  S  Y  W  P  C  L  W  K  S  *  S  P  F  S  A  R  G  V  T  Q  K  :  V  C  G  G  R  C  F  V  S  K  L  E  S  G  *  D  C  *  G  H  K  W  P  E  S  C  R  V  R  G  *  C  C  D  S  L  Q  :  V  C  D  C  C  I  G  G  S  L  G  E  I  L  A  V  *  V  G  R  S  *  S  F  C  S  N  S  L  W  S  G  S  *   : G  *  *  Q  S  I  *  P  E  P  D  G  F  H  G  L  *  R  L  C  Q  T  R  R  S  I  F  R  S  *  I  S  N  I  S  L  C  H  A  H  V  S  N  T  S  L  F  R   : G  N  L  F  G  F  K  R  C  N  A  I  R  S  V  K  E  K  T  D  A  T  I  E  H  P  W  C  K  N  *  R  N  L  R  G   : G  M  V  L  H  T  G  W  W  I  F  A  K  Y  R  T  K  N  T  C  I  W  C  C  C  *  H  G  S  S  S  H  R :   L  F  S  R  Q  I  T  F  *  S  S  K  M  R  L  C  T  C  K  Y  I  T  T  T  L  *  Q  E  H  A  Y  Q  F  K  Y  P  E  Y  I  N  S  S :   L  E  H  S  L  A  T  R  T  K  T  T  K  I  V  F  P  I  W  T  G  S  D  I  A  A  G  Y  *  G  D  K  V  I  F  P  R  I  L  P  C  A  K  M  :  D  V  A  G  I  S  W  F  K  S  F  F  S  R  P  H  V  I  C  L  L  H  V  Y  Y  C  T  K  *  H  E  K  R  L  D  Q  T  S  F  I  *  S  Y  W  C  N  I  D  K  N  L  S  Y  I  L  E  *  T  P  P  T  I  I  V  E  S  E  A  S  L  L  Q  I  H  N  R  N  R  G  L  S  R  H  C  I  *  H  F  H  *  L  N  M  L  E  *  V  A  *  F  Q  F  L  Y  L  L  L  F  L  S  *  I  M  Y  *  S  N  L  Y  T  L  P  I  Y  I  N  F  T  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50915" stop="51128"/>
                    <exon start="51845" stop="51980"/>
                    <exon start="52093" stop="52203"/>
                    <exon start="52283" stop="52385"/>
                    <exon start="52702" stop="52845"/>
                    <exon start="52942" stop="53049"/>
                    <exon start="53136" stop="53232"/>
                    <exon start="53457" stop="53582"/>
                    <exon start="53796" stop="53928"/>
                    <exon start="54553" stop="54718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTILLCSSYYLSLQLRQISAGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLVGPDLPFTNNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASGAASGKFLQYELGGPRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRDYVRHDAQSLEAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52109" e_stop="52175"/>
            <exon e_start="52352" e_stop="52385"/>
            <exon e_start="52702" e_stop="52845"/>
            <exon e_start="52942" e_stop="53049"/>
            <exon e_start="53136" e_stop="53232"/>
            <exon e_start="53457" e_stop="53582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.722" acc_prob="0.000" e_score="0.970"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="0.989" acc_prob="0.838" e_score="0.972"/>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="0.979"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="52109" e_stop="52175" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.722" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52176" i_stop="52351" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52352" e_stop="52385" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="52702" e_stop="52845" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="52942" e_stop="53049" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.838">
            <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="53136" e_stop="53232" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="53457" e_stop="53582" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52109" stop="52175"/>
              <exon start="52352" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52109" stop="52175"/>
              <exon start="52352" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGT : TTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG : GTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG : GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG : GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG : GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG</gDNA_template>
            <first_frame> V  L  Y  L  N  S  K  V  D  R  I  V  E  A  T  N  G  Q  S  L  V  E   : F  L  F  K  Q  L  M  E  W  K  L  R :   L  I  T  I  H  L  T  R  A  *  W  F  S  W  I  I  E  I  M  S  D  T  T  L  N  L  *  K  L  N  I  Q  H  F  F  M  P  C  P  C  L  Q  H  E  S  F  S  R :   K  L  V  W  L  Q  K  M  Q  C  H  S  I  C  *  R  K  N  *  C  Y  D  *  T  P  L  V  *  E  L  K  K  F  T  R  R :   N  G  L  T  Y  R  L  V  D  L  C  Q  I  Q  N  K  K  H  L  H  L  V  L  L  L  A  W  F  I  Q  P  Q  :  V  I  Q  S  S  D  H  F  L  K  L  Q  N  A  P  L  Y  L  Q  I  Y  Y  D  N  I  I  A  R  T  C  L  P  V  Q  V  S  R  V  Y  Q  L  K </first_frame>
            <second_frame>  F  C  I  *  T  R  K  W  I  G  L  L  R  P  Q  M  A  R  V  L  *  S  :  F  C  S  N  S  L  W  S  G  S  *   : G  *  *  Q  S  I  *  P  E  P  D  G  F  H  G  L  *  R  L  C  Q  T  R  R  S  I  F  R  S  *  I  S  N  I  S  L  C  H  A  H  V  S  N  T  S  L  F  R   : G  N  L  F  G  F  K  R  C  N  A  I  R  S  V  K  E  K  T  D  A  T  I  E  H  P  W  C  K  N  *  R  N  L  R  G   : G  M  V  L  H  T  G  W  W  I  F  A  K  Y  R  T  K  N  T  C  I  W  C  C  C  *  H  G  S  S  S  H  R :   L  F  S  R  Q  I  T  F  *  S  S  K  M  R  L  C  T  C  K  Y  I  T  T  T  L  *  Q  E  H  A  Y  Q  F  K  Y  P  E  Y  I  N  S   </second_frame>
            <third_frame>   F  V  S  K  L  E  S  G  *  D  C  *  G  H  K  W  P  E  S  C  R  V :   S  V  Q  T  A  Y  G  V  E  V  E  :  V  D  N  N  P  F  D  P  S  L  M  V  F  M  D  Y  R  D  Y  V  R  H  D  A  Q  S  L  E  A  K  Y  P  T  F  L  Y  A  M  P  M  S  P  T  R  V  F  F  E  :  E  T  C  L  A  S  K  D  A  M  P  F  D  L  L  K  K  K  L  M  L  R  L  N  T  L  G  V  R  I  K  E  I  Y  E  E  :  E  W  S  Y  I  P  V  G  G  S  L  P  N  T  E  Q  K  T  L  A  F  G  A  A  A  S  M  V  H  P  A  T   : G  Y  S  V  V  R  S  L  S  E  A  P  K  C  A  S  V  L  A  N  I  L  R  Q  H  Y  S  K  N  M  L  T  S  S  S  I  P  S  I  S  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52147" stop="52175"/>
                    <exon start="52352" stop="52385"/>
                    <exon start="52702" stop="52845"/>
                    <exon start="52942" stop="53049"/>
                    <exon start="53136" stop="53232"/>
                    <exon start="53457" stop="53581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHKWPESCRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRDYVRHDAQSLEAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59036" PGL_stop="61557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59036" e_stop="59239"/>
            <exon e_start="59842" e_stop="60588"/>
            <exon e_start="60695" e_stop="61557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.996"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59036" e_stop="59239" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.914">
            <gDNA_intron_boundary i_start="59240" i_stop="59841" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59842" e_stop="60588" e_length="747"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="60589" i_stop="60694" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="60695" e_stop="61557" e_length="863"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59036" stop="59239"/>
              <exon start="59842" stop="60378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59037" stop="59239"/>
              <exon start="59842" stop="60160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60374" stop="60588"/>
              <exon start="60695" stop="61206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60979" stop="61557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAG : GTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTCAATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAG : GAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAGATTGCTT</gDNA_template>
            <first_frame> D  A  L  L  S  S  D  G  R  Y  R  R  F  T  R  R  E  I  E  V  A  T  D  Y  F  S  E  S  K  M  I  G  E  G  A  Y  G  K  V  Y  K  G  D  L  D  H  T  P  V  A  I  K  V  L  H  S  D  A  S  E  K  K  E  E  F  L  K  E  :  V  E  V  L  S  Q  L  H  H  P  H  I  V  L  L  L  G  A  C  P  E  N  G  C  L  A  Y  E  Y  M  E  N  G  N  L  E  D  Y  I  L  E  R  N  S  K  P  L  P  W  F  S  R  F  R  I  L  F  E  V  A  C  A  L  A  F  L  H  N  S  K  P  E  P  V  I  H  R  D  L  K  P  G  N  I  L  L  D  K  N  F  V  S  K  I  G  D  V  G  L  A  K  I  I  S  D  V  V  P  E  N  V  T  E  Y  R  N  S  V  L  A  G  T  L  G  Y  M  D  P  E  Y  Q  R  T  G  T  L  R  P  K  S  D  L  Y  A  F  G  I  I  I  L  Q  L  L  T  A  R  R  P  N  G  L  I  M  K  F  E  N  A  I  N  C  N  S  L  V  D  I  L  D  K  S  V  P  D  W  P  L  I  E  V  E  E  L  G  R  M  A  L  K  C  C  M  L  R  C  R  E  R  P  D  L  D  T  E  V  L  P  L  L  K  R  L  A  G  Y  A  D  M  H  S  N  E  E  K  N  L  I  H  A  P  I  Q  Y  L  C  P  I  L  Q  :  E  V  M  E  D  P  Q  I  A  A  D  G  Y  T  Y  E  H  R  A  I  K  L  W  F  D  R  Y  S  V  S  P  M  T  K  Q  R  L  Q  H  K  L  V  T  P  N  H  T  L  R  L  A  I  Q  E  W  R  S  T  F  N  N  I  Q  I  E  K  N  *  *  L  L  W  I  V  Q  G  R  V  S  H  L  L  I  S  N  S  F  T  C  G  L  V  *  M  L  H  N  I  I  F  N  H  T  S  T  V  L  P  V  Q  R  V  K  T  F  M  M  I  S  S  Q  N  N  N  *  R  N  Q  E  K  K  E  K  *  *  D  C  C  I  H  K  *  L  Q  N  K  V  V  K  Y  Y  V  C  I  Y  T  L  L  P  S  V  H  *  Q  L  *  I  F  *  S  I  V  K  L  L  I  V  G  N  Q  *  K  I  C  A  K  F  N  I  I  L  R  V  R  P  Y  I  L  I  H  D  S  S  G  R  S  L  K  Y  C  L  E  M  I  *  Y  D  M  T  Q  F  Q  F  T  V  D  M  T  L  D  R  R  K  *  I  M  I  E  G  *  *  I  V  E  N  *  L  V  S  R  Y  *  L  V  G  V  Y  V  F  R  F  L  L  L  F  V  V  Y  C  T  S  M  I  L  V  F  R  C  S  L  C  S  F  F  L  D  C   </first_frame>
            <second_frame>  M  H  Y  Y  H  L  M  A  D  I  E  G  L  L  D  E  R  L  R  L  Q  L  T  T  F  P  S  L  R  *  L  V  K  E  H  T  G  K  F  T  K  A  I  L  I  T  P  L  L  P  S  K  F  F  I  L  M  H  Q  K  R  K  R  N  F  *  K  R :   W  R  F  L  A  S  Y  I  T  H  T  L  F  Y  C  L  E  P  V  L  K  M  V  A  L  L  M  S  I  W  R  M  E  T  W  K  I  T  Y  W  N  G  T  A  N  H  Y  L  G  F  L  D  S  G  Y  F  L  K  W  H  V  L  L  H  S  Y  T  T  Q  S  L  S  L  L  F  I  E  I  *  N  Q  E  I  Y  C  W  T  K  I  L  *  A  K  *  E  M  *  V  *  Q  R  L  Y  Q  M  L  Y  Q  K  M  L  Q  N  T  G  T  L  F  L  L  A  P  L  V  T  W  I  Q  S  I  K  E  L  A  H  S  D  Q  N  L  I  C  M  L  L  E  *  *  Y  F  N  Y  *  L  L  V  V  L  M  A  L  *  *  N  L  R  M  L  *  I  V  I  H  *  W  I  Y  L  I  S  Q  F  L  I  G  R  *  L  K  *  R  S  *  V  G  W  R  *  N  A  A  C  L  D  A  E  R  D  L  T  S  I  L  K  F  F  H  F  *  K  D  L  L  D  M  L  T  C  I  A  M  K  R  R  T  L  Y  T  H  L  F  S  T  Y  A  R  S  F  R :   K  *  W  K  I  H  R  *  Q  L  M  A  I  R  M  S  I  E  Q  *  S  Y  G  L  T  D  T  V  Y  H  P  *  Q  N  R  D  Y  S  T  S  *  S  R  Q  T  T  H  C  D  L  L  Y  K  S  G  D  Q  H  S  T  T  F  R  *  R  K  T  S  D  C  C  G  *  F  K  V  E  S  L  I  Y  L  F  L  I  H  S  L  V  D  W  F  E  C  C  I  T  S  S  S  T  I  P  P  L  Y  F  R  C  K  G  S  K  R  S  *  *  Y  Q  A  K  T  I  T  R  E  T  K  K  R  R  K  S  N  R  T  V  V  Y  T  S  D  F  R  T  K  S  S  S  I  M  F  A  Y  I  H  Y  Y  R  V  C  I  S  N  C  K  S  F  E  V  L  *  S  S  *  L  *  E  T  S  R  K  Y  V  Q  N  L  T  *  F  *  E  *  D  H  T  F  *  F  M  I  L  L  V  G  V  *  S  I  A  *  R  *  F  D  M  T  *  H  N  F  S  L  L  W  T  *  P  *  I  G  G  N  R  L  *  *  K  V  S  R  *  *  R  I  D  S  F  L  V  T  S  *  L  E  F  M  S  F  D  F  C  Y  Y  L  L  F  I  A  L  R  *  F  *  Y  F  V  V  V  C  A  P  F  F  *  I  A  </second_frame>
            <third_frame>   C  T  I  I  I  *  W  Q  I  *  K  V  Y  *  T  R  D  *  G  C  N  *  L  L  F  R  V  *  D  D  W  *  R  S  I  R  E  S  L  Q  R  R  S  *  S  H  P  C  C  H  Q  S  S  S  F  *  C  I  R  K  E  R  G  I  S  K  R   : G  G  G  S  *  P  V  T  S  P  T  H  C  F  T  A  W  S  L  S  *  K  W  L  P  C  L  *  V  Y  G  E  W  K  P  G  R  L  H  I  G  T  E  Q  Q  T  I  T  L  V  F  S  I  Q  D  T  F  *  S  G  M  C  S  C  I  P  T  Q  L  K  A  *  A  C  Y  S  S  R  S  E  T  R  K  Y  I  V  G  Q  K  F  C  E  Q  N  R  R  C  R  S  S  K  D  Y  I  R  C  C  T  R  K  C  Y  R  I  Q  E  L  C  S  C  W  H  P  W  L  H  G  S  R  V  S  K  N  W  H  T  Q  T  K  I  *  S  V  C  F  W  N  N  N  T  S  I  T  N  C  S  S  S  *  W  P  Y  N  E  I  *  E  C  Y  K  L  *  F  I  S  G  Y  T  *  *  V  S  S  *  L  A  V  D  *  S  R  G  A  R  *  D  G  A  K  M  L  H  A  *  M  P  R  E  T  *  P  R  Y  *  S  S  S  T  S  E  K  T  C  W  I  C  *  H  A  *  Q  *  R  E  E  P  Y  T  R  T  Y  S  V  L  M  P  D  P  S   : G  S  N  G  R  S  T  D  S  S  *  W  L  Y  V  *  A  *  S  N  K  V  M  V  *  Q  I  Q  C  I  T  H  D  K  T  E  T  T  A  Q  A  S  H  A  K  P  H  I  A  T  C  Y  T  R  V  E  I  N  I  Q  Q  H  S  D  R  E  K  L  V  I  A  V  D  S  S  R  *  S  L  S  F  T  Y  F  *  F  I  H  L  W  T  G  L  N  A  A  *  H  H  L  Q  P  Y  L  H  C  T  S  G  A  K  G  Q  N  V  H  D  D  I  K  P  K  Q  *  L  E  K  P  R  K  E  G  K  V  I  G  L  L  Y  T  Q  V  T  S  E  Q  S  R  Q  V  L  C  L  H  I  Y  I  I  T  E  C  A  L  A  T  V  N  L  L  K  Y  C  K  A  P  D  C  R  K  P  V  E  N  M  C  K  I  *  H  N  S  E  S  E  T  I  H  S  D  S  *  F  F  W  *  E  F  E  V  L  P  R  D  D  L  I  *  H  D  T  I  S  V  Y  C  G  H  D  L  R  *  E  E  I  D  Y  D  R  R  L  V  D  S  R  E  L  T  R  F  S  L  L  V  S  W  S  L  C  L  S  I  S  V  T  I  C  C  L  L  H  F  D  D  S  S  I  S  L  *  F  V  L  L  F  F  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59036" stop="59239"/>
                    <exon start="59842" stop="60588"/>
                    <exon start="60695" stop="60898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DALLSSDGRYRRFTRREIEVATDYFSESKMIGEGAYGKVYKGDLDHTPVAIKVLHSDASEKKEEFLKEVEVLSQLHHPHIVLLLGACPENGCLAYEYMENGNLEDYILERNSKPLPWFSRFRILFEVACALAFLHNSKPEPVIHRDLKPGNILLDKNFVSKIGDVGLAKIISDVVPENVTEYRNSVLAGTLGYMDPEYQRTGTLRPKSDLYAFGIIILQLLTARRPNGLIMKFENAINCNSLVDILDKSVPDWPLIEVEELGRMALKCCMLRCRERPDLDTEVLPLLKRLAGYADMHSNEEKNLIHAPIQYLCPILQEVMEDPQIAADGYTYEHRAIKLWFDRYSVSPMTKQRLQHKLVTPNHTLRLAIQEWRSTFNNIQIEKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="61265" PGL_stop="60979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61265" e_stop="60979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="61265" e_stop="60979" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61265" stop="60979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTATGTTAAATTTTGCACATATTTTCTACTGGTTTCCTACAATCAGGAGCTTTACAATACTTCAAAAGATTTACAGTTGCTAATGCACACTCGGTAATAATGTATATATGCAAACATAATACTTGACGACTTTGTTCTGAAGTCACTTGTGTATACAACAGTCCTATTACTTTTCCTTCTTTTCTTGGTTTCTCTAGTTATTGTTTTGGCTTGATATCATCATGAACGTTTTGACCCTTTGCACCGGAAGTACAGTGGAGGTATGGTTGAAGATGATGTTATGC</gDNA_template>
            <first_frame> E  L  C  *  I  L  H  I  F  S  T  G  F  L  Q  S  G  A  L  Q  Y  F  K  R  F  T  V  A  N  A  H  S  V  I  M  Y  I  C  K  H  N  T  *  R  L  C  S  E  V  T  C  V  Y  N  S  P  I  T  F  P  S  F  L  G  F  S  S  Y  C  F  G  L  I  S  S  *  T  F  *  P  F  A  P  E  V  Q  W  R  Y  G  *  R  *  C  Y   </first_frame>
            <second_frame>  N  Y  V  K  F  C  T  Y  F  L  L  V  S  Y  N  Q  E  L  Y  N  T  S  K  D  L  Q  L  L  M  H  T  R  *  *  C  I  Y  A  N  I  I  L  D  D  F  V  L  K  S  L  V  Y  T  T  V  L  L  L  F  L  L  F  L  V  S  L  V  I  V  L  A  *  Y  H  H  E  R  F  D  P  L  H  R  K  Y  S  G  G  M  V  E  D  D  V  M  </second_frame>
            <third_frame>   I  M  L  N  F  A  H  I  F  Y  W  F  P  T  I  R  S  F  T  I  L  Q  K  I  Y  S  C  *  C  T  L  G  N  N  V  Y  M  Q  T  *  Y  L  T  T  L  F  *  S  H  L  C  I  Q  Q  S  Y  Y  F  S  F  F  S  W  F  L  *  L  L  F  W  L  D  I  I  M  N  V  L  T  L  C  T  G  S  T  V  E  V  W  L  K  M  M  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0011D12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65878" PGL_stop="63881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65878" e_stop="65441"/>
            <exon e_start="63944" e_stop="63881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.703"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="65878" e_stop="65441" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65440" i_stop="63945" i_length="1496"/>
          </intron>
          <exon e_serial="2" e_score="0.703">
            <gDNA_exon_boundary e_start="63944" e_stop="63881" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65878" stop="65441"/>
              <exon start="63944" stop="63881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299720" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACACCATGATCAAAATCAAATTTTTGGTTCTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGTGCGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAGAAAGTCGAGTTCTTGAAAAAAGTTTAGAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTCTTAATTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACACACAAGAAGTA : AAAAAAAAAAAAGAAAGGAAGAAAAGAGAAAAAAAAAGAAAGAAAAAAAAGGAGGAAAGAAAAA</gDNA_template>
            <first_frame> I  L  I  G  I  F  T  N  T  F  S  A  R  D  N  T  M  I  K  I  K  F  L  V  L  V  I  K  K  G  V  I  F  N  *  F  *  F  W  V  R  F  V  F  D  T  Q  K  F  I  *  D  F  L  N  W  V  V  I  K  I  V  N  F  Y  L  F  R  H  G  L  M  M  M  M  I  R  R  W  R  K  K  V  E  F  L  K  K  V  *  R  I  E  I  F  L  *  W  K  *  R  R  K  R  S  D  F  H  S  N  N  E  A  F  F  S  *  F  F  *  S  F  S  R  C  E  S  I  *  R  F  C  Q  I  *  N  K  E  K  C  V  N  T  Q  E  V  :  K  K  K  K  E  R  K  K  R  E  K  K  R  K  K  K  K  E  E  R  K  </first_frame>
            <second_frame>  F  S  L  A  F  S  R  T  R  L  V  P  E  T  T  P  *  S  K  S  N  F  W  F  L  *  S  K  R  V  *  F  S  T  D  F  D  S  G  C  V  S  F  S  T  P  R  N  L  F  R  I  S  S  T  G  L  *  S  K  S  L  I  F  I  F  F  D  M  D  *  *  *  *  *  S  E  D  G  E  R  K  S  S  S  *  K  K  F  R  E  L  K  S  S  C  D  G  N  E  E  E  K  E  V  I  S  I  Q  I  M  K  L  F  F  L  N  S  F  N  L  F  P  G  V  K  V  F  E  D  F  V  K  Y  E  T  K  K  S  V  *  T  H  K  K  * :   K  K  K  K  K  G  R  K  E  K  K  K  E  R  K  K  R  R  K  E  K </second_frame>
            <third_frame>   S  H  W  H  F  H  E  H  V  *  C  Q  R  Q  H  H  D  Q  N  Q  I  F  G  S  C  N  Q  K  G  C  D  F  Q  L  I  L  I  L  G  A  F  R  F  R  H  P  E  I  Y  L  G  F  P  Q  L  G  C  D  Q  N  R  *  F  L  S  F  S  T  W  I  D  D  D  D  D  Q  K  M  E  K  E  S  R  V  L  E  K  S  L  E  N  *  N  L  L  V  M  E  M  K  K  K  K  K  *  F  P  F  K  *  *  S  F  F  F  L  I  L  L  I  F  F  Q  V  *  K  Y  L  K  I  L  S  N  M  K  Q  R  K  V  C  E  H  T  R  S   : K  K  K  K  R  K  E  E  K  R  K  K  K  K  E  K  K  G  G  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0011D12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65418" PGL_stop="67383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65418" e_stop="67383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="65418" e_stop="67383" e_length="1966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65418" stop="67224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747391" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65454" stop="66087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65455" stop="66222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65455" stop="66097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65455" stop="65877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65455" stop="65866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65455" stop="65830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65458" stop="65938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65459" stop="65906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65459" stop="65873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65464" stop="65867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="66208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65595" stop="66087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65671" stop="65945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65899" stop="66431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65899" stop="66335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65899" stop="66309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65956" stop="66780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65991" stop="66622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66147" stop="66575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66178" stop="66826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66178" stop="66746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66251" stop="66725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66374" stop="66989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66402" stop="66826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66513" stop="66866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66744" stop="67383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTAATTTTCTTCAATTCATTACTTCTTGTGTGTTCACACACTTTTCTTTGTTTCATATTTGACAAAATCTTCAAATACTTTCACACCTGGAAAAAGATTAAAAGAATTAAGAAAAAAAAGCTTCATTATTTGAATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAACTTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATGTCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAATTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTTTTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGTGTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGCTCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGATCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAAGCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTGACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGCATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGTATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATGGCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAAATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATCGCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAGACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTTTGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTATGAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCATTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCTTTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAAGCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTTCTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAAGAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATGAACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGGACTAGTTTTCTATGATGAAATATGGAAATTCAAGATTTAGTTTACATGTTTTAGAGCTTGAATATTAGGGGTAATTCTTTTACATGGTTTATTTGAGTCATGTTATAGAATAAGTTATTATTGATCTTCATAGAAGATTTGCTTTTCCATTTCAAGTATTTCATATTGTTTAGGACATTATGAATTGGACTCAATTCTTTATCAAAGAAATTTAGCCAAAAAAATTGGAAGTTTCTCTTTGTTGCCATTGTTCTTTTTCTCCTTTTGATTTCTTCATTGTTGTGTTCTCTACCAATACTTGTCTTTTTAGACGATTTACTATCTTAAACAACCTTTCTTCTTTCTCAAAGACAGGGGTAAGGTTGCGTATATCACTCTCTTCAATTACA</gDNA_template>
            <first_frame> I  F  N  F  L  Q  F  I  T  S  C  V  F  T  H  F  S  L  F  H  I  *  Q  N  L  Q  I  L  S  H  L  E  K  D  *  K  N  *  E  K  K  A  S  L  F  E  W  K  S  L  L  F  L  L  H  F  H  H  K  K  I  S  I  L  *  T  F  F  K  N  S  T  F  F  L  H  L  L  I  I  I  I  I  N  P  C  R  K  R  *  K  L  T  I  L  I  T  T  Q  L  R  K  S  *  I  N  F  W  V  S  K  T  K  R  T  Q  N  Q  N  Q  L  K  I  T  P  F  L  I  T  R  T  K  N  L  I  L  I  M  V  L  S  L  A  L  N  V  F  V  K  M  P  M  R  M  K  M  V  *  L  R  L  S  L  V  L  A  L  V  L  V  I  L  S  S  H  Y  S  R  G  G  Y  G  *  K  T  D  Q  M  R  G  G  S  N  V  T  V  L  I  S  L  K  R  N  L  R  K  H  F  I  W  A  K  L  R  L  I  L  Y  V  L  K  *  N  Q  *  *  Q  K  R  T  R  C  Y  V  W  R  Y  L  F  V  N  V  *  L  Y  A  F  G  D  W  L  Q  E  S  H  S  E  K  C  L  G  D  L  G  *  V  Y  L  L  V  I  S  S  C  S  R  Y  A  Q  L  *  E  G  C  *  W  R  N  S  Y  N  G  L  M  N  L  R  W  R  K  L  N  T  S  L  K  S  F  P  G  *  K  M  *  V  D  Q  C  T  R  H  M  Y  Q  L  S  R  L  R  K  V  S  R  V  T  S  T  K  G  I  L  R  G  I  R  R  H  L  T  P  L  Q  Y  K  G  L  L  I  Q  R  G  F  S  Q  M  F  V  *  D  G  L  V  R  *  Q  M  I  K  S  W  K  N  R  Y  F  M  K  E  Q  T  E  E  T  *  M  V  L  T  L  L  G  V  Q  D  F  H  *  R  I  G  F  *  F  R  L  L  I  R  M  L  H  G  H  N  M  L  L  M  R  K  *  M  M  F  K  E  L  P  K  K  R  L  *  D  *  K  Q  D  G  V  V  *  R  K  E  Q  K  *  N  F  K  I  C  L  L  F  L  E  L  V  V  H  F  T  I  S  V  R  L  E  V  K  N  Y  V  K  N  *  G  S  I  W  L  M  M  K  *  S  R  K  L  L  *  D  Q  *  T  R  *  K  *  E  I  R  L  L  T  N  Y  Y  I  I  I  T  Q  G  L  V  F  Y  D  E  I  W  K  F  K  I  *  F  T  C  F  R  A  *  I  L  G  V  I  L  L  H  G  L  F  E  S  C  Y  R  I  S  Y  Y  *  S  S  *  K  I  C  F  S  I  S  S  I  S  Y  C  L  G  H  Y  E  L  D  S  I  L  Y  Q  R  N  L  A  K  K  I  G  S  F  S  L  L  P  L  F  F  F  S  F  *  F  L  H  C  C  V  L  Y  Q  Y  L  S  F  *  T  I  Y  Y  L  K  Q  P  F  F  F  L  K  D  R  G  K  V  A  Y  I  T  L  F  N  Y  </first_frame>
            <second_frame>  F  L  I  F  F  N  S  L  L  L  V  C  S  H  T  F  L  C  F  I  F  D  K  I  F  K  Y  F  H  T  W  K  K  I  K  R  I  K  K  K  K  L  H  Y  L  N  G  N  H  F  F  F  F  F  I  S  I  T  R  R  F  Q  F  S  K  L  F  S  R  T  R  L  S  F  S  I  F  *  S  S  S  S  S  I  H  V  E  K  D  K  N  *  R  F  *  S  Q  P  S  *  G  N  P  K  *  I  S  G  C  R  K  R  N  A  P  R  I  K  I  S  *  K  S  H  P  F  *  L  Q  E  P  K  I  *  F  *  S  W  C  C  L  W  H  *  T  C  S  *  K  C  Q  *  E  *  R  W  S  S  *  G  Y  L  W  F  W  L  W  F  W  L  F  S  A  A  I  T  A  E  E  V  M  G  E  K  Q  I  K  C  V  V  G  A  M  *  P  S  *  F  P  *  R  G  I  *  E  S  I  S  Y  G  Q  S  Y  V  *  F  Y  M  F  *  N  R  I  S  S  D  K  K  G  H  D  V  T  Y  G  D  T  C  S  S  T  C  S  C  M  H  L  E  I  G  Y  R  R  A  T  P  R  S  V  *  A  I  W  V  R  Y  I  Y  L  S  *  A  R  A  R  G  M  H  S  Y  K  R  G  V  N  G  E  I  H  T  M  A  *  *  T  *  D  G  G  N  *  T  R  V  *  N  P  F  R  D  R  K  C  R  W  I  N  V  H  D  T  C  T  N  Y  R  A  *  G  K  C  R  E  L  L  Q  Q  K  A  Y  *  E  E  S  E  D  I  L  L  R  Y  S  T  R  G  C  *  S  K  G  D  F  H  R  C  L  Y  R  M  A  W  F  D  D  R  *  S  S  L  G  K  I  D  T  L  *  K  S  K  Q  R  K  L  E  W  Y  L  H  C  W  E  F  R  I  S  I  N  G  L  D  F  S  S  V  Y  S  S  E  C  Y  M  D  T  T  C  F  *  *  E  S  E  *  C  S  K  S  C  Q  R  S  V  Y  E  I  E  S  K  M  E  L  F  K  E  K  N  R  S  E  T  S  R  F  A  C  C  S  W  S  L  L  Y  T  S  Q  Y  L  *  D  *  R  *  R  I  T  S  R  I  K  V  R  F  G  *  *  *  N  D  P  G  S  C  C  E  I  N  E  R  D  E  S  K  R  S  D  C  S  Q  T  I  T  S  *  S  L  R  D  *  F  S  M  M  K  Y  G  N  S  R  F  S  L  H  V  L  E  L  E  Y  *  G  *  F  F  Y  M  V  Y  L  S  H  V  I  E  *  V  I  I  D  L  H  R  R  F  A  F  P  F  Q  V  F  H  I  V  *  D  I  M  N  W  T  Q  F  F  I  K  E  I  *  P  K  K  L  E  V  S  L  C  C  H  C  S  F  S  P  F  D  F  F  I  V  V  F  S  T  N  T  C  L  F  R  R  F  T  I  L  N  N  L  S  S  F  S  K  T  G  V  R  L  R  I  S  L  S  S  I  T </second_frame>
            <third_frame>   F  *  F  S  S  I  H  Y  F  L  C  V  H  T  L  F  F  V  S  Y  L  T  K  S  S  N  T  F  T  P  G  K  R  L  K  E  L  R  K  K  S  F  I  I  *  M  E  I  T  S  F  S  S  S  F  P  S  Q  E  D  F  N  S  L  N  F  F  Q  E  L  D  F  L  S  P  S  S  D  H  H  H  H  Q  S  M  S  K  K  I  K  I  N  D  F  D  H  N  P  V  E  E  I  L  N  K  F  L  G  V  E  N  E  T  H  P  E  S  K  S  V  E  N  H  T  L  F  D  Y  K  N  Q  K  F  D  F  D  H  G  V  V  S  G  T  K  R  V  R  E  N  A  N  E  N  E  D  G  L  V  E  V  I  S  G  S  G  S  G  S  G  Y  S  Q  Q  P  L  Q  Q  R  R  L  W  V  K  N  R  S  N  A  W  W  E  Q  C  N  R  P  D  F  P  E  E  E  F  K  K  A  F  H  M  G  K  A  T  F  D  F  I  C  S  E  I  E  S  V  V  T  K  K  D  T  M  L  R  M  A  I  P  V  R  Q  R  V  A  V  C  I  W  R  L  A  T  G  E  P  L  R  E  V  S  R  R  F  G  L  G  I  S  T  C  H  K  L  V  L  E  V  C  T  A  I  R  G  V  L  M  A  K  F  I  Q  W  P  D  E  L  K  M  E  E  I  K  H  E  F  E  I  L  S  G  I  E  N  V  G  G  S  M  Y  T  T  H  V  P  I  I  A  P  K  E  S  V  A  S  Y  F  N  K  R  H  T  E  R  N  Q  K  T  S  Y  S  V  T  V  Q  G  V  V  D  P  K  G  I  F  T  D  V  C  I  G  W  P  G  S  M  T  D  D  Q  V  L  E  K  S  I  L  Y  E  R  A  N  R  G  N  L  N  G  T  Y  I  V  G  S  S  G  F  P  L  T  D  W  I  L  V  P  F  T  H  Q  N  V  T  W  T  Q  H  A  F  N  E  K  V  N  D  V  Q  R  V  A  K  E  A  F  M  R  L  K  A  R  W  S  C  L  K  K  R  T  E  V  K  L  Q  D  L  P  V  V  L  G  A  C  C  T  L  H  N  I  C  E  I  R  G  E  E  L  R  Q  E  L  R  F  D  L  V  D  D  E  M  I  P  E  V  V  V  R  S  M  N  A  M  K  V  R  D  Q  I  A  H  K  L  L  H  H  N  H  S  G  T  S  F  L  *  *  N  M  E  I  Q  D  L  V  Y  M  F  *  S  L  N  I  R  G  N  S  F  T  W  F  I  *  V  M  L  *  N  K  L  L  L  I  F  I  E  D  L  L  F  H  F  K  Y  F  I  L  F  R  T  L  *  I  G  L  N  S  L  S  K  K  F  S  Q  K  N  W  K  F  L  F  V  A  I  V  L  F  L  L  L  I  S  S  L  L  C  S  L  P  I  L  V  F  L  D  D  L  L  S  *  T  T  F  L  L  S  Q  R  Q  G  *  G  C  V  Y  H  S  L  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65555" stop="67009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEITSFSSSFPSQEDFNSLNFFQELDFLSPSSDHHHHQSMSKKIKINDFDHNPVEEILNKFLGVENETHPESKSVENHTLFDYKNQKFDFDHGVVSGTKRVRENANENEDGLVEVISGSGSGSGYSQQPLQQRRLWVKNRSNAWWEQCNRPDFPEEEFKKAFHMGKATFDFICSEIESVVTKKDTMLRMAIPVRQRVAVCIWRLATGEPLREVSRRFGLGISTCHKLVLEVCTAIRGVLMAKFIQWPDELKMEEIKHEFEILSGIENVGGSMYTTHVPIIAPKESVASYFNKRHTERNQKTSYSVTVQGVVDPKGIFTDVCIGWPGSMTDDQVLEKSILYERANRGNLNGTYIVGSSGFPLTDWILVPFTHQNVTWTQHAFNEKVNDVQRVAKEAFMRLKARWSCLKKRTEVKLQDLPVVLGACCTLHNICEIRGEELRQELRFDLVDDEMIPEVVVRSMNAMKVRDQIAHKLLHHNHSGTSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="67219" PGL_stop="66519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67219" e_stop="66519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="67219" e_stop="66519" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67219" stop="66519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTTTGGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCATAATGTCCTAAACAATATGAAATACTTGAAATGGAAAAGCAAATCTTCTATGAAGATCAATAATAACTTATTCTATAACATGACTCAAATAAACCATGTAAAAGAATTACCCCTAATATTCAAGCTCTAAAACATGTAAACTAAATCTTGAATTTCCATATTTCATCATAGAAAACTAGTCCCTGAGTGATTATGATGTAATAGTTTGTGAGCAATCTGATCTCTTACTTTCATCGCGTTCATTGATCTCACAACAACTTCCGGGATCATTTCATCATCAACCAAATCGAACCTTAATTCTTGACGTAATTCTTCACCTCTAATCTCACAGATATTGTGAAGTGTACAACAAGCTCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAACGCTTCTTTGGCAACTCTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCATGTAACATTCTGATGAGTAAACGGAACTAAAATCCAATCCGTTAATGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCATAAAGTATCGATTTTTCCAAGACTTGATCATCTGTCATCGAACCAGGCCATCCTA</gDNA_template>
            <first_frame> I  F  L  A  K  F  L  *  *  R  I  E  S  N  S  *  C  P  K  Q  Y  E  I  L  E  M  E  K  Q  I  F  Y  E  D  Q  *  *  L  I  L  *  H  D  S  N  K  P  C  K  R  I  T  P  N  I  Q  A  L  K  H  V  N  *  I  L  N  F  H  I  S  S  *  K  T  S  P  *  V  I  M  M  *  *  F  V  S  N  L  I  S  Y  F  H  R  V  H  *  S  H  N  N  F  R  D  H  F  I  I  N  Q  I  E  P  *  F  L  T  *  F  F  T  S  N  L  T  D  I  V  K  C  T  T  S  S  K  N  N  R  Q  I  L  K  F  H  F  C  S  F  L  *  T  T  P  S  C  F  Q  S  H  K  R  F  F  G  N  S  L  N  I  I  H  F  L  I  K  S  M  L  C  P  C  N  I  L  M  S  K  R  N  *  N  P  I  R  *  W  K  S  *  T  P  N  N  V  S  T  I  Q  V  S  S  V  C  S  F  I  K  Y  R  F  F  Q  D  L  I  I  C  H  R  T  R  P  S   </first_frame>
            <second_frame>  F  F  W  L  N  F  F  D  K  E  L  S  P  I  H  N  V  L  N  N  M  K  Y  L  K  W  K  S  K  S  S  M  K  I  N  N  N  L  F  Y  N  M  T  Q  I  N  H  V  K  E  L  P  L  I  F  K  L  *  N  M  *  T  K  S  *  I  S  I  F  H  H  R  K  L  V  P  E  *  L  *  C  N  S  L  *  A  I  *  S  L  T  F  I  A  F  I  D  L  T  T  T  S  G  I  I  S  S  S  T  K  S  N  L  N  S  *  R  N  S  S  P  L  I  S  Q  I  L  *  S  V  Q  Q  A  P  R  T  T  G  K  S  *  S  F  T  S  V  L  F  F  K  Q  L  H  L  A  F  N  L  I  N  A  S  L  A  T  L  *  T  S  F  T  F  S  L  K  A  C  C  V  H  V  T  F  *  *  V  N  G  T  K  I  Q  S  V  N  G  N  P  E  L  P  T  M  *  V  P  F  K  F  P  L  F  A  L  S  *  S  I  D  F  S  K  T  *  S  S  V  I  E  P  G  H  P  </second_frame>
            <third_frame>   F  F  G  *  I  S  L  I  K  N  *  V  Q  F  I  M  S  *  T  I  *  N  T  *  N  G  K  A  N  L  L  *  R  S  I  I  T  Y  S  I  T  *  L  K  *  T  M  *  K  N  Y  P  *  Y  S  S  S  K  T  C  K  L  N  L  E  F  P  Y  F  I  I  E  N  *  S  L  S  D  Y  D  V  I  V  C  E  Q  S  D  L  L  L  S  S  R  S  L  I  S  Q  Q  L  P  G  S  F  H  H  Q  P  N  R  T  L  I  L  D  V  I  L  H  L  *  S  H  R  Y  C  E  V  Y  N  K  L  Q  E  Q  Q  A  N  L  E  V  S  L  L  F  F  S  L  N  N  S  I  L  L  S  I  S  *  T  L  L  W  Q  L  F  E  H  H  S  L  S  H  *  K  H  V  V  S  M  *  H  S  D  E  *  T  E  L  K  S  N  P  L  M  E  I  L  N  S  Q  Q  C  K  Y  H  S  S  F  L  C  L  L  F  H  K  V  S  I  F  P  R  L  D  H  L  S  S  N  Q  A  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0011D12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="74263" PGL_stop="78142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74263" e_stop="74624"/>
            <exon e_start="76659" e_stop="76833"/>
            <exon e_start="77522" e_stop="77605"/>
            <exon e_start="77747" e_stop="77988"/>
            <exon e_start="78099" e_stop="78142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.129" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74263" e_stop="74624" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76659" e_stop="76833" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77522" e_stop="77605" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.994">
            <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="77747" e_stop="77988" e_length="242"/>
          </exon>
          <intron i_serial="4" don_prob="0.129" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77989" i_stop="78098" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78099" e_stop="78142" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74263" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74263" stop="74624"/>
              <exon start="76659" stop="76686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74267" stop="74624"/>
              <exon start="76659" stop="76810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74272" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74272" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74272" stop="74624"/>
              <exon start="76659" stop="76831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74272" stop="74624"/>
              <exon start="76659" stop="76687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74273" stop="74624"/>
              <exon start="76659" stop="76742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74274" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74274" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74278" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74278" stop="74624"/>
              <exon start="76659" stop="76829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74288" stop="74624"/>
              <exon start="76659" stop="76685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74306" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74624"/>
              <exon start="76659" stop="76829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74340" stop="74624"/>
              <exon start="76659" stop="76752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74371" stop="74624"/>
              <exon start="76659" stop="76830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74379" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74383" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74562" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77988"/>
              <exon start="78099" stop="78142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG : GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG : GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG : GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACCG : GGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</gDNA_template>
            <first_frame> F  P  P  S  N  S  I  F  I  S  P  F  *  R  I  F  V  L  K  R  K  I  I  I  E  F  L  I  L  L  L  L  H  C  L  R  R  F  A  Q  S  S  P  *  *  K  G  R  R  L  I  E  D  F  F  K  K  I  M  A  K  N  R  E  E  E  E  Q  Q  Q  H  I  M  V  A  L  T  E  E  E  E  E  E  L  E  E  Q  L  G  S  S  L  T  L  E  R  V  A  A  A  K  K  L  I  E  D  H  Y  K  S  H  M  K  L  I  Q  D  R  K  Q  R :   R  S  L  L  E  R  K  L  E  G  S  G  V  P  K  E  E  Q  M  N  L  L  K  E  L  E  R  K  E  T  E  Y  I  R  L  K  R  H  K  I  S  V  D  D  F  E  L  L  T  I  I  G  R  G  A  F  G  E  :  V  R  L  C  R  D  K  V  S  K  N  I  Y  A  M  K  K  L  K  K  A  E  M  L  S  R  G  Q  :  V  E  H  V  R  A  E  R  N  L  L  A  E  V  A  S  H  F  I  V  K  L  F  Y  S  F  Q  D  A  D  Y  L  Y  L  V  M  E  Y  L  P  G  G  D  M  M  T  L  L  I  R  E  E  T  L  T  E  T  V  A  R  F  Y  I  A  Q  S  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  N  G  H  </first_frame>
            <second_frame>  S  L  R  P  I  L  S  S  F  L  L  F  N  G  F  S  Y  *  K  E  K  *  *  S  N  F  S  S  F  F  F  F  I  V  F  A  D  S  L  N  R  R  P  D  K  K  E  D  D  *  S  K  I  F  L  K  K  L  W  R  R  T  E  R  R  K  S  N  N  N  I  *  W  *  R  *  R  R  R  K  R  K  N  W  R  S  N  *  V  L  V  *  L  *  N  E  S  L  L  R  R  N  *  S  K  I  I  I  N  R  I  *  N  *  S  R  I  V  N  K   : G  V  H  C  *  K  G  N  W  K  A  L  V  Y  Q  K  R  N  K  *  T  F  *  R  N  W  R  E  K  R  Q  S  I  S  D  *  S  V  T  R  F  L  S  M  I  L  S  F  *  Q  S  L  G  E  E  L  L  E  R :   S  D  C  A  G  T  K  Y  L  K  I  Y  M  Q  *  K  N  *  R  R  L  K  C  *  V  E  G  R :   L  N  M  L  G  P  K  G  I  C  L  L  K  *  R  A  T  L  L  *  N  F  F  I  L  S  K  M  L  T  T  C  I  W  *  W  N  I  C  L  V  V  I  *  *  H  C  *  S  G  R  R  H  *  L  R  Q  S  Q  D  F  T  L  L  K  V  F  W  P  *  S  L  F  I  S  I  T  T  F  T   : G  I  *  N  L  T  I  F  F  W  T  K  M  V  T </second_frame>
            <third_frame>   P  S  V  Q  F  Y  L  H  F  S  F  L  T  D  F  R  I  E  K  K  N  N  N  R  I  S  H  P  S  S  S  S  L  S  S  P  I  R  S  I  V  A  L  I  K  R  K  T  I  D  R  R  F  F  *  K  N  Y  G  E  E  Q  R  G  G  R  A  T  T  T  Y  N  G  S  V  N  G  G  G  R  G  R  I  G  G  A  I  R  F  *  F  D  S  R  T  S  R  C  C  E  E  I  D  R  R  S  L  *  I  A  Y  E  T  N  P  G  S  *  T  K  :  A  F  T  A  R  K  E  I  G  R  L  W  C  T  K  R  G  T  N  E  P  S  K  G  I  G  E  K  R  D  R  V  Y  P  T  K  A  S  Q  D  F  C  R  *  F  *  A  F  D  N  H  W  E  R  S  F  W  R   : G  Q  I  V  P  G  Q  S  I  *  K  Y  I  C  N  E  K  I  E  E  G  *  N  A  K  *  R  A   : G  *  T  C  *  G  R  K  E  F  A  C  *  S  S  E  P  L  Y  C  K  T  F  L  F  F  P  R  C  *  L  L  V  S  G  N  G  I  S  A  W  W  *  Y  D  D  I  A  D  Q  G  G  D  I  N  *  D  S  R  K  I  L  H  C  S  K  C  F  G  H  R  V  Y  S  *  A  *  L  H  S  P  :  G  Y  K  T  *  Q  S  S  F  G  Q  K  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74398" stop="74624"/>
                    <exon start="76659" stop="76833"/>
                    <exon start="77522" stop="77605"/>
                    <exon start="77747" stop="77988"/>
                    <exon start="78099" stop="78141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGRRLIEDFFKKIMAKNREEEEQQQHIMVALTEEEEEELEEQLGSSLTLERVAAAKKLIEDHYKSHMKLIQDRKQRRSLLERKLEGSGVPKEEQMNLLKELERKETEYIRLKRHKISVDDFELLTIIGRGAFGEVRLCRDKVSKNIYAMKKLKKAEMLSRGQVEHVRAERNLLAEVASHFIVKLFYSFQDADYLYLVMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="78150" PGL_stop="84118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78150" e_stop="78303"/>
            <exon e_start="79424" e_stop="79503"/>
            <exon e_start="79692" e_stop="79776"/>
            <exon e_start="80105" e_stop="80236"/>
            <exon e_start="80310" e_stop="80423"/>
            <exon e_start="80864" e_stop="80908"/>
            <exon e_start="81001" e_stop="81085"/>
            <exon e_start="83606" e_stop="84118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.888" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="78150" e_stop="78303" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78304" i_stop="79423" i_length="1120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79424" e_stop="79503" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79504" i_stop="79691" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79692" e_stop="79776" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.598" acc_prob="0.973">
            <gDNA_intron_boundary i_start="79777" i_stop="80104" i_length="328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80105" e_stop="80236" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="80237" i_stop="80309" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80310" e_stop="80423" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.662">
            <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80864" e_stop="80908" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.502">
            <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81001" e_stop="81085" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="83606" e_stop="84118" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78150" stop="78303"/>
              <exon start="79424" stop="79503"/>
              <exon start="79692" stop="79776"/>
              <exon start="80105" stop="80236"/>
              <exon start="80310" stop="80423"/>
              <exon start="80864" stop="80908"/>
              <exon start="81001" stop="81085"/>
              <exon start="83606" stop="83735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78151" stop="78303"/>
              <exon start="79424" stop="79503"/>
              <exon start="79692" stop="79776"/>
              <exon start="80105" stop="80223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80105" stop="80236"/>
              <exon start="80310" stop="80423"/>
              <exon start="80864" stop="80908"/>
              <exon start="81001" stop="81085"/>
              <exon start="83606" stop="83980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80362" stop="80423"/>
              <exon start="80864" stop="80908"/>
              <exon start="81001" stop="81085"/>
              <exon start="83606" stop="84118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAGGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTA : GCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTG : GTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAG : ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAG : GCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG : GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG : AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG : GTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAGTTCTACAACAAAACTAGACAATCAACATGCCATTTTTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTTCTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTACCCTTTTAGGAAGAGCTAAGAATGACTTAAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAATCAGTTTCT</gDNA_template>
            <first_frame> V  *  F  W  S  M  Q  A  P  *  L  F  E  F  I  S  Y  K  *  K  *  S  D  *  W  *  G  K  G  I  C  *  Q  V  E  *  L  P  *  T  N  A  A  L  A  N  K  Q  E  K  I   : S  I  F  N  S  G  H  S  *  L  Y  C  S  *  G  F  T  E  E  R  L  W  S  G  M  *  L  :  V  V  T  W  R  H  H  V  *  D  A  R  W  L  S  P  F  L  L  R  R  P  N  N  N  M  *  K   : D  S  S  L  E  K  S  H  K  I  S  R  G  S  K  I  N  S  *  S  Q  R  P  D  L  *  V  A  L  *  C  *  K  S  S  W  L  S  R  S  R  A  N  K   : G  S  P  L  V  Q  R  H  K  V  G  *  T  L  *  H  G  G  S  I  *  A  R  S  Q  *  C  S  *  H  S  K  F  H  E  V  *  *   : G  K  S  S  T  S  K  K  *  F  R  T  Q  S  K   : E  A  S  D  S  R  R  F  K  F  C  W  L  Y  L  Q  E  F  *  G  C  E  G  I  K  T  F  F  R :   *  F  C  S  G  Y  L  R  Q  V  F  N  R  *  Q  *  N  A  C  P  R  C  C  I  S  R  Y  C  N  S  L  M  S  I  Q  V  L  Q  Q  N  *  T  I  N  M  P  F  L  W  F  F  L  E  V  I  T  L  S  V  Q  F  E  F  R  P  L  L  L  C  P  Q  K  Q  I  A  I  Y  N  T  L  K  C  K  K  *  Q  I  Q  D  L  W  V  G  F  M  Q  L  S  L  G  V  F  F  F  F  L  F  Q  T  *  K  L  C  I  Q  T  L  S  I  *  L  D  Y  P  F  R  K  S  *  E  *  L  K  S  Y  L  S  R  T  L  L  S  S  Y  S  Q  I  L  Y  I  H  T  A  V  P  R  K  W  G  N  Q  I  V  C  F  L  L  N  Q  F   </first_frame>
            <second_frame>  S  D  F  G  L  C  K  P  L  D  C  S  N  L  S  P  I  N  E  N  E  V  I  D  G  E  E  K  G  S  A  N  K  W  N  S  S  L  E  Q  M  Q  H  W  Q  I  N  R  R  K  L  :  A  F  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  V  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  E  D  P  I  T  T  C  R  K  :  I  V  H  W  R  N  H  I  K  F  P  E  E  A  R  L  T  P  E  A  K  D  L  I  C  K  L  L  C  D  A  E  N  R  L  G  C  R  G  A  E  Q  I  K  :  A  H  P  W  F  K  D  I  K  W  D  K  L  Y  N  M  E  A  A  Y  K  P  E  V  N  D  A  L  D  T  Q  N  F  M  K  F  D  E  :  A  N  Q  A  P  A  K  N  S  S  G  P  N  R  K  :  K  R  L  I  P  E  D  L  S  F  V  G  Y  T  Y  K  N  F  E  A  V  K  G  L  R  H  S  S   : G  D  S  A  V  D  I  S  G  K  C  S  I  D  D  N  E  M  L  V  L  A  A  A  S  A  D  T  V  T  L  *  *  A  S  K  F  Y  N  K  T  R  Q  S  T  C  H  F  Y  G  F  S  W  R  *  *  H  *  V  F  N  S  S  S  D  H  C  S  F  V  H  K  S  R  L  P  F  T  T  L  *  N  V  K  S  D  K  Y  R  I  S  G  *  V  S  C  S  Y  H  *  E  F  F  S  F  F  F  F  K  L  E  N  C  V  Y  K  H  *  A  F  N  L  T  T  L  L  G  R  A  K  N  D  L  N  H  I  C  L  E  P  F  *  V  L  T  P  R  F  C  T  F  T  Q  L  Y  Q  E  N  G  E  I  K  *  Y  A  F  F  *  I  S  F  </second_frame>
            <third_frame>   L  I  L  V  Y  A  S  P  L  T  V  R  I  Y  L  L  *  M  K  M  K  *  L  M  V  R  K  R  D  L  L  T  S  G  I  A  P  L  N  K  C  S  I  G  K  *  T  G  E  N  * :   H  F  Q  Q  W  A  L  L  T  I  L  L  L  R  F  Y  *  R  K  A  M  E  W  N  V  I   : G  G  H  L  A  P  S  C  M  R  C  S  L  V  I  P  L  S  T  P  K  T  Q  *  Q  H  V  E  R :   *  F  I  G  E  I  T  *  N  F  Q  R  K  Q  D  *  L  L  K  P  K  T  *  S  V  S  C  F  V  M  L  K  I  V  L  V  V  E  E  Q  S  K  *  R :   L  T  P  G  S  K  T  *  S  G  I  N  F  I  T  W  R  Q  H  I  S  Q  K  S  M  M  L  L  T  L  K  I  S  *  S  L  M  R :   Q  I  K  H  Q  Q  K  I  V  Q  D  P  I  E  R :   S  V  *  F  P  K  I  *  V  L  L  A  I  P  T  R  I  L  R  L  *  R  D  *  D  I  L  Q  :  V  I  L  Q  W  I  S  Q  A  S  V  Q  S  M  T  M  K  C  L  S  S  L  L  H  Q  Q  I  L  *  L  S  D  E  H  P  S  S  T  T  K  L  D  N  Q  H  A  I  F  M  V  F  P  G  G  N  N  I  E  C  S  I  R  V  P  T  I  A  P  L  S  T  K  A  D  C  H  L  Q  H  F  K  M  *  K  V  T  N  T  G  S  L  G  R  F  H  A  A  I  T  R  S  F  F  L  F  S  F  S  N  L  K  I  V  Y  T  N  I  K  H  L  T  *  L  P  F  *  E  E  L  R  M  T  *  I  I  S  V  *  N  P  F  E  F  L  L  P  D  F  V  H  S  H  S  C  T  K  K  M  G  K  S  N  S  M  L  S  S  K  S  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78151" stop="78303"/>
                    <exon start="79424" stop="79503"/>
                    <exon start="79692" stop="79776"/>
                    <exon start="80105" stop="80236"/>
                    <exon start="80310" stop="80423"/>
                    <exon start="80864" stop="80908"/>
                    <exon start="81001" stop="81085"/>
                    <exon start="83606" stop="83700"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDFGLCKPLDCSNLSPINENEVIDGEEKGSANKWNSSLEQMQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSEDPITTCRKIVHWRNHIKFPEEARLTPEAKDLICKLLCDAENRLGCRGAEQIKAHPWFKDIKWDKLYNMEAAYKPEVNDALDTQNFMKFDEANQAPAKNSSGPNRKKRLIPEDLSFVGYTYKNFEAVKGLRHSSGDSAVDISGKCSIDDNEMLVLAAASADTVTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90375" PGL_stop="83899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90375" e_stop="89897"/>
            <exon e_start="89729" e_stop="89645"/>
            <exon e_start="88472" e_stop="88338"/>
            <exon e_start="87557" e_stop="87333"/>
            <exon e_start="87250" e_stop="87068"/>
            <exon e_start="86654" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="83916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.970" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90375" e_stop="89897" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89729" e_stop="89645" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.904">
            <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88472" e_stop="88338" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87557" e_stop="87333" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.322">
            <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87250" e_stop="87068" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.217" acc_prob="0.952">
            <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86654" e_stop="86431" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="84781" e_stop="83916" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90375" stop="89986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90268" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90253" stop="89897"/>
              <exon start="89729" stop="89669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90199" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90137" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90133" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90125" stop="89938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90120" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90096" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87556" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87386" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87376" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86318" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84441" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT : GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT : CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG : GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG : GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT : CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAA</gDNA_template>
            <first_frame> L  L  L  F  A  R  L  L  H  R  V  F  Q  L  T  Q  L  S  R  N  A  P  K  L  P  N  F  F  Q  H  I  F  F  F  S  K  K  I  I  I  *  E  *  T  F  N  *  N  T  K  N  S  V  A  W  K  Q  F  H  L  *  S  F  K  I  S  I  K  E  *  T  L  S  R  I  S  K  T  P  F  A  *  K  Q  L  S  F  W  V  F  K  I  S  I  K  K  K  *  F  L  R  R  I  Q  D  F  N  K  K  V  I  F  K  K  N  S  R  T  Q  V  S  Q  E  A  I  F  T  V  I  L  Q  D  L  A  M  K  K  G  S  F  A  P  N  L  K  L  S  L  P  P  P  D  E  V  A  L  S  K  F  L :   T  E  S  G  T  F  K  D  G  D  L  L  V  N  R  D  G  V  R  I  V  S  Q  S  E  V  A  A  :  P  S  V  I  Q  P  S  D  N  Q  L  C  L  A  D  F  E  A  V  K  V  I  G  K  G  N  G  G  I  V  R  L  V  Q  H  K  W  T  G  Q  F  F  A  L  K  :  V  I  Q  M  N  I  D  E  S  M  R  K  H  I  A  Q  E  L  R  I  N  Q  S  S  Q  C  P  Y  V  V  I  C  Y  Q  S  F  F  D  N  G  A  I  S  L  I  L  E  Y  M  D  G  G  S  L  A  D  F  L  K  K  V  K  T  I  P  E  R  F  L  A  V  I  C  K  Q  :  V  L  K  G  L  W  Y  L  H  H  E  K  H  I  I  H  R  D  L  K  P  S  N  L  L  I  N  H  R  G  D  V  K  I  T  D  F  G  V  S  A  V  L  A  S  T  S  G  L  A  N  T  F  V  G  T  Y  N  Y  M  S  :  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E  C  K  T  F  K  I  P  F  L  L  M  R  S  F  *  R  P  I  N  S  S  R  I  Y  Q  K  Q  P  L  L  P  T  K  L  R  V  R  S  M  *  I  L  P  S  L  D  S  T  C  G  I  T  P  L  G  M  P  L  F  L  *  W  L  S  L  Y  Y  T  P  S  I  *  M  *  V  T  *  I  *  L  I  L  Y  G  T  S  L  H  K  L  E  A  S  I  I  I  Q  L  A  H  L  T  P  L  A  V  G  K  R  Y  R  N  *  F  R  R  K  H  T  I  *  F  P  H  F  L  G  T  A  V  *  M  Y  K  I  W  E  *  E  L  K  R  V  L  D  R  Y  D  L  S  H  S  *  L  F  L  K  G  *  S  S  *  M  L  N  V  C  I  H  N  F  Q  V  *  K  R  K   </first_frame>
            <second_frame>  C  Y  Y  L  Q  D  F  Y  I  E  S  F  S  *  P  S  *  A  E  M  P  L  S  S  P  I  F  S  N  I  Y  F  F  F  Q  K  K  *  S  Y  R  S  E  L  L  T  R  I  Q  K  T  Q  L  P  G  S  N  F  I  F  D  L  S  R  F  L  *  K  S  E  L  *  A  E  L  A  K  P  H  L  P  E  S  N  F  H  F  G  C  S  R  F  Q  *  K  K  S  D  F  *  E  E  F  K  I  S  I  K  K  *  F  L  R  R  I  Q  E  P  K  F  P  K  K  Q  F  L  L  *  F  Y  K  I  *  L  *  R  K  D  L  L  H  L  I  L  N  S  L  F  L  L  L  M  K  L  L  S  P  N  S   : *  L  N  Q  E  H  L  R  M  E  I  F  W  *  I  E  M  E  F  E  L  F  R  R  V  K  L  Q  L :   L  Q  L  Y  S  H  Q  T  T  S  Y  A  *  L  I  L  K  Q  *  K  L  L  E  R  E  M  V  V  *  C  G  W  F  S  I  N  G  Q  G  N  F  S  L  S  R :   L  F  R  *  I  L  M  S  L  C  A  N  I  L  L  K  N  *  E  L  I  S  H  P  S  V  H  M  L  S  Y  A  I  S  R  S  S  T  M  V  L  Y  P  *  F  W  S  I  W  M  V  V  P  *  Q  I  F  *  K  R  S  K  Q  Y  L  N  D  F  L  L  L  S  A  N  R :   F  S  K  A  C  G  I  F  I  M  R  S  I  L  F  T  G  I  *  N  L  R  I  C  *  S  I  T  E  V  M  S  K  S  Q  T  L  V  *  V  Q  Y  *  Q  A  H  L  D  W  P  I  P  L  S  A  H  T  T  I  C  L :   Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  V  K  L  L  R  S  H  F  S  L  *  D  H  F  R  D  L  S  T  H  Q  G  S  I  R  N  N  L  S  Y  P  Q  S  *  G  *  G  L  C  K  S  Y  P  P  *  I  R  H  V  G  L  H  H  L  V  C  R  C  S  C  N  G  Y  R  Y  T  I  P  H  Q  Y  K  C  K  S  H  R  Y  S  *  S  C  M  E  P  A  F  I  S  W  K  P  P  L  *  F  S  S  L  I  *  H  L  W  L  L  E  K  D  T  E  T  D  L  E  E  S  I  L  F  D  F  P  I  F  L  V  Q  L  C  E  C  T  K  S  G  S  K  N  S  K  G  F  *  T  D  M  I  *  V  I  L  S  S  S  *  K  G  S  Q  V  K  C  L  M  F  V  Y  T  I  F  K  F  E  K  E  K  </second_frame>
            <third_frame>   A  I  I  C  K  T  S  T  *  S  L  S  V  D  P  A  K  Q  K  C  P  *  A  P  Q  F  F  P  T  Y  I  F  F  F  K  K  N  N  H  I  G  V  N  F  *  L  E  Y  K  K  L  S  C  L  E  A  I  S  S  L  I  F  Q  D  F  Y  K  R  V  N  F  K  Q  N  *  Q  N  P  I  C  L  K  A  T  F  I  L  G  V  Q  D  F  N  K  K  K  V  I  F  K  K  N  S  R  F  Q  *  K  S  D  F  *  E  E  F  K  N  P  S  F  P  R  S  N  F  Y  C  D  F  T  R  F  S  Y  E  E  R  I  F  C  T  *  S  *  T  L  S  S  S  S  *  *  S  C  S  L  Q  I  P  :  D  *  I  R  N  I  *  G  W  R  S  S  G  E  *  R  W  S  S  N  C  F  A  E  *  S  C  S   : S  F  S  Y  T  A  I  R  Q  P  V  M  L  S  *  F  *  S  S  K  S  Y  W  K  G  K  W  W  Y  S  A  A  G  S  A  *  M  D  R  A  I  F  R  S  Q   : G  Y  S  D  E  Y  *  *  V  Y  A  Q  T  Y  C  S  R  T  E  N  *  S  V  I  P  V  S  I  C  C  H  M  L  S  V  V  L  R  Q  W  C  Y  I  L  D  F  G  V  Y  G  W  W  F  L  S  R  F  S  E  K  G  Q  N  N  T  *  T  I  S  C  C  Y  L  Q  T   : G  S  Q  R  L  V  V  S  S  S  *  E  A  Y  Y  S  Q  G  F  E  T  F  E  F  A  N  Q  S  Q  R  *  C  Q  N  H  R  L  W  C  E  C  S  T  S  K  H  I  W  T  G  Q  Y  L  C  R  H  I  Q  L  Y  V   : S  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M  *  N  F  *  D  P  I  S  P  Y  E  I  I  L  E  T  Y  Q  L  I  K  D  L  S  E  T  T  S  L  T  H  K  A  K  G  K  V  Y  V  N  P  T  L  L  R  F  D  M  W  D  Y  T  T  W  Y  A  V  V  P  V  M  V  I  V  I  L  Y  P  I  N  I  N  V  S  H  I  D  I  A  N  P  V  W  N  Q  P  S  *  A  G  S  L  H  Y  N  S  A  R  S  F  D  T  S  G  C  W  K  K  I  Q  K  L  I  *  K  K  A  Y  Y  L  I  S  P  F  S  W  Y  S  C  V  N  V  Q  N  L  G  V  R  T  Q  K  G  S  R  Q  I  *  F  K  S  F  L  A  L  P  K  R  V  V  K  L  N  A  *  C  L  Y  T  Q  F  S  S  L  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="89897"/>
                    <exon start="89729" stop="89645"/>
                    <exon start="88472" stop="88338"/>
                    <exon start="87557" stop="87333"/>
                    <exon start="87250" stop="87068"/>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRRIQDFNKKVIFKKNSRTQVSQEAIFTVILQDLAMKKGSFAPNLKLSLPPPDEVALSKFLTESGTFKDGDLLVNRDGVRIVSQSEVAAPSVIQPSDNQLCLADFEAVKVIGKGNGGIVRLVQHKWTGQFFALKVIQMNIDESMRKHIAQELRINQSSQCPYVVICYQSFFDNGAISLILEYMDGGSLADFLKKVKTIPERFLAVICKQVLKGLWYLHHEKHIIHRDLKPSNLLINHRGDVKITDFGVSAVLASTSGLANTFVGTYNYMSPERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84434" stop="84183"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPISPYEIILETYQLIKDLSETTSLTHKAKGKVYVNPTLLRFDMWDYTTWYAVVPVMVIVILYPININVSHIDIANPVWNQPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90375" e_stop="89897"/>
            <exon e_start="89729" e_stop="89645"/>
            <exon e_start="88472" e_stop="88338"/>
            <exon e_start="87557" e_stop="87333"/>
            <exon e_start="87250" e_stop="87068"/>
            <exon e_start="86654" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="84411"/>
            <exon e_start="83931" e_stop="83899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.970" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90375" e_stop="89897" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89729" e_stop="89645" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.904">
            <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88472" e_stop="88338" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87557" e_stop="87333" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.322">
            <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87250" e_stop="87068" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.217" acc_prob="0.952">
            <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86654" e_stop="86431" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="84781" e_stop="84411" e_length="371"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84410" i_stop="83932" i_length="479"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="83931" e_stop="83899" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90375" stop="89986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90268" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90253" stop="89897"/>
              <exon start="89729" stop="89669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90199" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90137" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90133" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90125" stop="89938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90120" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90096" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87556" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87386" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87376" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86182" stop="86084"/>
              <exon start="84781" stop="84411"/>
              <exon start="83931" stop="83899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT : GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT : CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG : GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG : GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT : CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATC : TTTGAAAAAGAAAAAAGAAAAAAACTCCTAGTG</gDNA_template>
            <first_frame> L  L  L  F  A  R  L  L  H  R  V  F  Q  L  T  Q  L  S  R  N  A  P  K  L  P  N  F  F  Q  H  I  F  F  F  S  K  K  I  I  I  *  E  *  T  F  N  *  N  T  K  N  S  V  A  W  K  Q  F  H  L  *  S  F  K  I  S  I  K  E  *  T  L  S  R  I  S  K  T  P  F  A  *  K  Q  L  S  F  W  V  F  K  I  S  I  K  K  K  *  F  L  R  R  I  Q  D  F  N  K  K  V  I  F  K  K  N  S  R  T  Q  V  S  Q  E  A  I  F  T  V  I  L  Q  D  L  A  M  K  K  G  S  F  A  P  N  L  K  L  S  L  P  P  P  D  E  V  A  L  S  K  F  L :   T  E  S  G  T  F  K  D  G  D  L  L  V  N  R  D  G  V  R  I  V  S  Q  S  E  V  A  A  :  P  S  V  I  Q  P  S  D  N  Q  L  C  L  A  D  F  E  A  V  K  V  I  G  K  G  N  G  G  I  V  R  L  V  Q  H  K  W  T  G  Q  F  F  A  L  K  :  V  I  Q  M  N  I  D  E  S  M  R  K  H  I  A  Q  E  L  R  I  N  Q  S  S  Q  C  P  Y  V  V  I  C  Y  Q  S  F  F  D  N  G  A  I  S  L  I  L  E  Y  M  D  G  G  S  L  A  D  F  L  K  K  V  K  T  I  P  E  R  F  L  A  V  I  C  K  Q  :  V  L  K  G  L  W  Y  L  H  H  E  K  H  I  I  H  R  D  L  K  P  S  N  L  L  I  N  H  R  G  D  V  K  I  T  D  F  G  V  S  A  V  L  A  S  T  S  G  L  A  N  T  F  V  G  T  Y  N  Y  M  S  :  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E  C  K  T  F  K  I  P  F  L  L  M  R  S :   L  K  K  K  K  E  K  N  S  *   </first_frame>
            <second_frame>  C  Y  Y  L  Q  D  F  Y  I  E  S  F  S  *  P  S  *  A  E  M  P  L  S  S  P  I  F  S  N  I  Y  F  F  F  Q  K  K  *  S  Y  R  S  E  L  L  T  R  I  Q  K  T  Q  L  P  G  S  N  F  I  F  D  L  S  R  F  L  *  K  S  E  L  *  A  E  L  A  K  P  H  L  P  E  S  N  F  H  F  G  C  S  R  F  Q  *  K  K  S  D  F  *  E  E  F  K  I  S  I  K  K  *  F  L  R  R  I  Q  E  P  K  F  P  K  K  Q  F  L  L  *  F  Y  K  I  *  L  *  R  K  D  L  L  H  L  I  L  N  S  L  F  L  L  L  M  K  L  L  S  P  N  S   : *  L  N  Q  E  H  L  R  M  E  I  F  W  *  I  E  M  E  F  E  L  F  R  R  V  K  L  Q  L :   L  Q  L  Y  S  H  Q  T  T  S  Y  A  *  L  I  L  K  Q  *  K  L  L  E  R  E  M  V  V  *  C  G  W  F  S  I  N  G  Q  G  N  F  S  L  S  R :   L  F  R  *  I  L  M  S  L  C  A  N  I  L  L  K  N  *  E  L  I  S  H  P  S  V  H  M  L  S  Y  A  I  S  R  S  S  T  M  V  L  Y  P  *  F  W  S  I  W  M  V  V  P  *  Q  I  F  *  K  R  S  K  Q  Y  L  N  D  F  L  L  L  S  A  N  R :   F  S  K  A  C  G  I  F  I  M  R  S  I  L  F  T  G  I  *  N  L  R  I  C  *  S  I  T  E  V  M  S  K  S  Q  T  L  V  *  V  Q  Y  *  Q  A  H  L  D  W  P  I  P  L  S  A  H  T  T  I  C  L :   Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  V  K  L  L  R  S  H  F  S  L  *  D   : L  *  K  R  K  K  K  K  T  P  S  </second_frame>
            <third_frame>   A  I  I  C  K  T  S  T  *  S  L  S  V  D  P  A  K  Q  K  C  P  *  A  P  Q  F  F  P  T  Y  I  F  F  F  K  K  N  N  H  I  G  V  N  F  *  L  E  Y  K  K  L  S  C  L  E  A  I  S  S  L  I  F  Q  D  F  Y  K  R  V  N  F  K  Q  N  *  Q  N  P  I  C  L  K  A  T  F  I  L  G  V  Q  D  F  N  K  K  K  V  I  F  K  K  N  S  R  F  Q  *  K  S  D  F  *  E  E  F  K  N  P  S  F  P  R  S  N  F  Y  C  D  F  T  R  F  S  Y  E  E  R  I  F  C  T  *  S  *  T  L  S  S  S  S  *  *  S  C  S  L  Q  I  P  :  D  *  I  R  N  I  *  G  W  R  S  S  G  E  *  R  W  S  S  N  C  F  A  E  *  S  C  S   : S  F  S  Y  T  A  I  R  Q  P  V  M  L  S  *  F  *  S  S  K  S  Y  W  K  G  K  W  W  Y  S  A  A  G  S  A  *  M  D  R  A  I  F  R  S  Q   : G  Y  S  D  E  Y  *  *  V  Y  A  Q  T  Y  C  S  R  T  E  N  *  S  V  I  P  V  S  I  C  C  H  M  L  S  V  V  L  R  Q  W  C  Y  I  L  D  F  G  V  Y  G  W  W  F  L  S  R  F  S  E  K  G  Q  N  N  T  *  T  I  S  C  C  Y  L  Q  T   : G  S  Q  R  L  V  V  S  S  S  *  E  A  Y  Y  S  Q  G  F  E  T  F  E  F  A  N  Q  S  Q  R  *  C  Q  N  H  R  L  W  C  E  C  S  T  S  K  H  I  W  T  G  Q  Y  L  C  R  H  I  Q  L  Y  V   : S  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M  *  N  F  *  D  P  I  S  P  Y  E  I  :  F  E  K  E  K  R  K  K  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="89897"/>
                    <exon start="89729" stop="89645"/>
                    <exon start="88472" stop="88338"/>
                    <exon start="87557" stop="87333"/>
                    <exon start="87250" stop="87068"/>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRRIQDFNKKVIFKKNSRTQVSQEAIFTVILQDLAMKKGSFAPNLKLSLPPPDEVALSKFLTESGTFKDGDLLVNRDGVRIVSQSEVAAPSVIQPSDNQLCLADFEAVKVIGKGNGGIVRLVQHKWTGQFFALKVIQMNIDESMRKHIAQELRINQSSQCPYVVICYQSFFDNGAISLILEYMDGGSLADFLKKVKTIPERFLAVICKQVLKGLWYLHHEKHIIHRDLKPSNLLINHRGDVKITDFGVSAVLASTSGLANTFVGTYNYMSPERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90375" e_stop="89897"/>
            <exon e_start="89729" e_stop="89645"/>
            <exon e_start="88472" e_stop="88338"/>
            <exon e_start="87557" e_stop="87333"/>
            <exon e_start="87250" e_stop="87068"/>
            <exon e_start="86654" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="84448"/>
            <exon e_start="83928" e_stop="83910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.970" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="0.991"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.278" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90375" e_stop="89897" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89729" e_stop="89645" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.904">
            <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88472" e_stop="88338" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87557" e_stop="87333" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.322">
            <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87250" e_stop="87068" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.217" acc_prob="0.952">
            <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="86654" e_stop="86431" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="84781" e_stop="84448" e_length="334"/>
          </exon>
          <intron i_serial="9" don_prob="0.278" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84447" i_stop="83929" i_length="519"/>
          </intron>
          <exon e_serial="10" e_score="0.842">
            <gDNA_exon_boundary e_start="83928" e_stop="83910" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90375" stop="89986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90347" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90268" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90253" stop="89897"/>
              <exon start="89729" stop="89669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90199" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90173" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90137" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90133" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90126" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90125" stop="89938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90120" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90096" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87556" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87386" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87376" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86288" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84448"/>
              <exon start="83928" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324436" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT : GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT : CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG : GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG : GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT : CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAAT : GAAAAAGAAAAAAGAAAAA</gDNA_template>
            <first_frame> L  L  L  F  A  R  L  L  H  R  V  F  Q  L  T  Q  L  S  R  N  A  P  K  L  P  N  F  F  Q  H  I  F  F  F  S  K  K  I  I  I  *  E  *  T  F  N  *  N  T  K  N  S  V  A  W  K  Q  F  H  L  *  S  F  K  I  S  I  K  E  *  T  L  S  R  I  S  K  T  P  F  A  *  K  Q  L  S  F  W  V  F  K  I  S  I  K  K  K  *  F  L  R  R  I  Q  D  F  N  K  K  V  I  F  K  K  N  S  R  T  Q  V  S  Q  E  A  I  F  T  V  I  L  Q  D  L  A  M  K  K  G  S  F  A  P  N  L  K  L  S  L  P  P  P  D  E  V  A  L  S  K  F  L :   T  E  S  G  T  F  K  D  G  D  L  L  V  N  R  D  G  V  R  I  V  S  Q  S  E  V  A  A  :  P  S  V  I  Q  P  S  D  N  Q  L  C  L  A  D  F  E  A  V  K  V  I  G  K  G  N  G  G  I  V  R  L  V  Q  H  K  W  T  G  Q  F  F  A  L  K  :  V  I  Q  M  N  I  D  E  S  M  R  K  H  I  A  Q  E  L  R  I  N  Q  S  S  Q  C  P  Y  V  V  I  C  Y  Q  S  F  F  D  N  G  A  I  S  L  I  L  E  Y  M  D  G  G  S  L  A  D  F  L  K  K  V  K  T  I  P  E  R  F  L  A  V  I  C  K  Q  :  V  L  K  G  L  W  Y  L  H  H  E  K  H  I  I  H  R  D  L  K  P  S  N  L  L  I  N  H  R  G  D  V  K  I  T  D  F  G  V  S  A  V  L  A  S  T  S  G  L  A  N  T  F  V  G  T  Y  N  Y  M  S  :  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E   : *  K  R  K  K  K   </first_frame>
            <second_frame>  C  Y  Y  L  Q  D  F  Y  I  E  S  F  S  *  P  S  *  A  E  M  P  L  S  S  P  I  F  S  N  I  Y  F  F  F  Q  K  K  *  S  Y  R  S  E  L  L  T  R  I  Q  K  T  Q  L  P  G  S  N  F  I  F  D  L  S  R  F  L  *  K  S  E  L  *  A  E  L  A  K  P  H  L  P  E  S  N  F  H  F  G  C  S  R  F  Q  *  K  K  S  D  F  *  E  E  F  K  I  S  I  K  K  *  F  L  R  R  I  Q  E  P  K  F  P  K  K  Q  F  L  L  *  F  Y  K  I  *  L  *  R  K  D  L  L  H  L  I  L  N  S  L  F  L  L  L  M  K  L  L  S  P  N  S   : *  L  N  Q  E  H  L  R  M  E  I  F  W  *  I  E  M  E  F  E  L  F  R  R  V  K  L  Q  L :   L  Q  L  Y  S  H  Q  T  T  S  Y  A  *  L  I  L  K  Q  *  K  L  L  E  R  E  M  V  V  *  C  G  W  F  S  I  N  G  Q  G  N  F  S  L  S  R :   L  F  R  *  I  L  M  S  L  C  A  N  I  L  L  K  N  *  E  L  I  S  H  P  S  V  H  M  L  S  Y  A  I  S  R  S  S  T  M  V  L  Y  P  *  F  W  S  I  W  M  V  V  P  *  Q  I  F  *  K  R  S  K  Q  Y  L  N  D  F  L  L  L  S  A  N  R :   F  S  K  A  C  G  I  F  I  M  R  S  I  L  F  T  G  I  *  N  L  R  I  C  *  S  I  T  E  V  M  S  K  S  Q  T  L  V  *  V  Q  Y  *  Q  A  H  L  D  W  P  I  P  L  S  A  H  T  T  I  C  L :   Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  :  E  K  E  K  R  K  </second_frame>
            <third_frame>   A  I  I  C  K  T  S  T  *  S  L  S  V  D  P  A  K  Q  K  C  P  *  A  P  Q  F  F  P  T  Y  I  F  F  F  K  K  N  N  H  I  G  V  N  F  *  L  E  Y  K  K  L  S  C  L  E  A  I  S  S  L  I  F  Q  D  F  Y  K  R  V  N  F  K  Q  N  *  Q  N  P  I  C  L  K  A  T  F  I  L  G  V  Q  D  F  N  K  K  K  V  I  F  K  K  N  S  R  F  Q  *  K  S  D  F  *  E  E  F  K  N  P  S  F  P  R  S  N  F  Y  C  D  F  T  R  F  S  Y  E  E  R  I  F  C  T  *  S  *  T  L  S  S  S  S  *  *  S  C  S  L  Q  I  P  :  D  *  I  R  N  I  *  G  W  R  S  S  G  E  *  R  W  S  S  N  C  F  A  E  *  S  C  S   : S  F  S  Y  T  A  I  R  Q  P  V  M  L  S  *  F  *  S  S  K  S  Y  W  K  G  K  W  W  Y  S  A  A  G  S  A  *  M  D  R  A  I  F  R  S  Q   : G  Y  S  D  E  Y  *  *  V  Y  A  Q  T  Y  C  S  R  T  E  N  *  S  V  I  P  V  S  I  C  C  H  M  L  S  V  V  L  R  Q  W  C  Y  I  L  D  F  G  V  Y  G  W  W  F  L  S  R  F  S  E  K  G  Q  N  N  T  *  T  I  S  C  C  Y  L  Q  T   : G  S  Q  R  L  V  V  S  S  S  *  E  A  Y  Y  S  Q  G  F  E  T  F  E  F  A  N  Q  S  Q  R  *  C  Q  N  H  R  L  W  C  E  C  S  T  S  K  H  I  W  T  G  Q  Y  L  C  R  H  I  Q  L  Y  V   : S  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M :   K  K  K  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="89897"/>
                    <exon start="89729" stop="89645"/>
                    <exon start="88472" stop="88338"/>
                    <exon start="87557" stop="87333"/>
                    <exon start="87250" stop="87068"/>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRRIQDFNKKVIFKKNSRTQVSQEAIFTVILQDLAMKKGSFAPNLKLSLPPPDEVALSKFLTESGTFKDGDLLVNRDGVRIVSQSEVAAPSVIQPSDNQLCLADFEAVKVIGKGNGGIVRLVQHKWTGQFFALKVIQMNIDESMRKHIAQELRINQSSQCPYVVICYQSFFDNGAISLILEYMDGGSLADFLKKVKTIPERFLAVICKQVLKGLWYLHHEKHIIHRDLKPSNLLINHRGDVKITDFGVSAVLASTSGLANTFVGTYNYMSPERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="90183" e_stop="90119"/>
            <exon e_start="90068" e_stop="89897"/>
            <exon e_start="89729" e_stop="89645"/>
            <exon e_start="88472" e_stop="88338"/>
            <exon e_start="87557" e_stop="87333"/>
            <exon e_start="87250" e_stop="87068"/>
            <exon e_start="86654" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="83916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.849"/>
          <exon-intron don_prob="0.970" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="0.985"/>
          <exon-intron don_prob="0.679" acc_prob="0.322" e_score="0.991"/>
          <exon-intron don_prob="0.217" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="0.973"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="90183" e_stop="90119" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90118" i_stop="90069" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.849">
            <gDNA_exon_boundary e_start="90068" e_stop="89897" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89729" e_stop="89645" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.904">
            <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="88472" e_stop="88338" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="87557" e_stop="87333" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="0.679" acc_prob="0.322">
            <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87250" e_stop="87068" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.217" acc_prob="0.952">
            <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="86654" e_stop="86431" e_length="224"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="10" e_score="0.970">
            <gDNA_exon_boundary e_start="84781" e_stop="83916" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90183" stop="90119"/>
              <exon start="90068" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90182" stop="90119"/>
              <exon start="90068" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87556" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87386" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87376" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86318" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84441" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTC : TTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT : GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT : CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG : GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG : GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT : CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAA</gDNA_template>
            <first_frame> I  S  I  K  E  *  T  L  S  R  I  S  K  T  P  F  A  *  K  Q  L  S :   S  R  F  Q  *  K  S  D  F  *  E  E  F  K  N  P  S  F  P  R  S  N  F  Y  C  D  F  T  R  F  S  Y  E  E  R  I  F  C  T  *  S  *  T  L  S  S  S  S  *  *  S  C  S  L  Q  I  P  :  D  *  I  R  N  I  *  G  W  R  S  S  G  E  *  R  W  S  S  N  C  F  A  E  *  S  C  S   : S  F  S  Y  T  A  I  R  Q  P  V  M  L  S  *  F  *  S  S  K  S  Y  W  K  G  K  W  W  Y  S  A  A  G  S  A  *  M  D  R  A  I  F  R  S  Q   : G  Y  S  D  E  Y  *  *  V  Y  A  Q  T  Y  C  S  R  T  E  N  *  S  V  I  P  V  S  I  C  C  H  M  L  S  V  V  L  R  Q  W  C  Y  I  L  D  F  G  V  Y  G  W  W  F  L  S  R  F  S  E  K  G  Q  N  N  T  *  T  I  S  C  C  Y  L  Q  T   : G  S  Q  R  L  V  V  S  S  S  *  E  A  Y  Y  S  Q  G  F  E  T  F  E  F  A  N  Q  S  Q  R  *  C  Q  N  H  R  L  W  C  E  C  S  T  S  K  H  I  W  T  G  Q  Y  L  C  R  H  I  Q  L  Y  V   : S  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M  *  N  F  *  D  P  I  S  P  Y  E  I  I  L  E  T  Y  Q  L  I  K  D  L  S  E  T  T  S  L  T  H  K  A  K  G  K  V  Y  V  N  P  T  L  L  R  F  D  M  W  D  Y  T  T  W  Y  A  V  V  P  V  M  V  I  V  I  L  Y  P  I  N  I  N  V  S  H  I  D  I  A  N  P  V  W  N  Q  P  S  *  A  G  S  L  H  Y  N  S  A  R  S  F  D  T  S  G  C  W  K  K  I  Q  K  L  I  *  K  K  A  Y  Y  L  I  S  P  F  S  W  Y  S  C  V  N  V  Q  N  L  G  V  R  T  Q  K  G  S  R  Q  I  *  F  K  S  F  L  A  L  P  K  R  V  V  K  L  N  A  *  C  L  Y  T  Q  F  S  S  L  K  K  K  K </first_frame>
            <second_frame>  F  L  *  K  S  E  L  *  A  E  L  A  K  P  H  L  P  E  S  N  F   : L  Q  D  F  N  K  K  V  I  F  K  K  N  S  R  T  Q  V  S  Q  E  A  I  F  T  V  I  L  Q  D  L  A  M  K  K  G  S  F  A  P  N  L  K  L  S  L  P  P  P  D  E  V  A  L  S  K  F  L :   T  E  S  G  T  F  K  D  G  D  L  L  V  N  R  D  G  V  R  I  V  S  Q  S  E  V  A  A  :  P  S  V  I  Q  P  S  D  N  Q  L  C  L  A  D  F  E  A  V  K  V  I  G  K  G  N  G  G  I  V  R  L  V  Q  H  K  W  T  G  Q  F  F  A  L  K  :  V  I  Q  M  N  I  D  E  S  M  R  K  H  I  A  Q  E  L  R  I  N  Q  S  S  Q  C  P  Y  V  V  I  C  Y  Q  S  F  F  D  N  G  A  I  S  L  I  L  E  Y  M  D  G  G  S  L  A  D  F  L  K  K  V  K  T  I  P  E  R  F  L  A  V  I  C  K  Q  :  V  L  K  G  L  W  Y  L  H  H  E  K  H  I  I  H  R  D  L  K  P  S  N  L  L  I  N  H  R  G  D  V  K  I  T  D  F  G  V  S  A  V  L  A  S  T  S  G  L  A  N  T  F  V  G  T  Y  N  Y  M  S  :  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E  C  K  T  F  K  I  P  F  L  L  M  R  S  F  *  R  P  I  N  S  S  R  I  Y  Q  K  Q  P  L  L  P  T  K  L  R  V  R  S  M  *  I  L  P  S  L  D  S  T  C  G  I  T  P  L  G  M  P  L  F  L  *  W  L  S  L  Y  Y  T  P  S  I  *  M  *  V  T  *  I  *  L  I  L  Y  G  T  S  L  H  K  L  E  A  S  I  I  I  Q  L  A  H  L  T  P  L  A  V  G  K  R  Y  R  N  *  F  R  R  K  H  T  I  *  F  P  H  F  L  G  T  A  V  *  M  Y  K  I  W  E  *  E  L  K  R  V  L  D  R  Y  D  L  S  H  S  *  L  F  L  K  G  *  S  S  *  M  L  N  V  C  I  H  N  F  Q  V  *  K  R  K   </second_frame>
            <third_frame>   F  Y  K  R  V  N  F  K  Q  N  *  Q  N  P  I  C  L  K  A  T  F  :  F  K  I  S  I  K  K  *  F  L  R  R  I  Q  E  P  K  F  P  K  K  Q  F  L  L  *  F  Y  K  I  *  L  *  R  K  D  L  L  H  L  I  L  N  S  L  F  L  L  L  M  K  L  L  S  P  N  S   : *  L  N  Q  E  H  L  R  M  E  I  F  W  *  I  E  M  E  F  E  L  F  R  R  V  K  L  Q  L :   L  Q  L  Y  S  H  Q  T  T  S  Y  A  *  L  I  L  K  Q  *  K  L  L  E  R  E  M  V  V  *  C  G  W  F  S  I  N  G  Q  G  N  F  S  L  S  R :   L  F  R  *  I  L  M  S  L  C  A  N  I  L  L  K  N  *  E  L  I  S  H  P  S  V  H  M  L  S  Y  A  I  S  R  S  S  T  M  V  L  Y  P  *  F  W  S  I  W  M  V  V  P  *  Q  I  F  *  K  R  S  K  Q  Y  L  N  D  F  L  L  L  S  A  N  R :   F  S  K  A  C  G  I  F  I  M  R  S  I  L  F  T  G  I  *  N  L  R  I  C  *  S  I  T  E  V  M  S  K  S  Q  T  L  V  *  V  Q  Y  *  Q  A  H  L  D  W  P  I  P  L  S  A  H  T  T  I  C  L :   Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  V  K  L  L  R  S  H  F  S  L  *  D  H  F  R  D  L  S  T  H  Q  G  S  I  R  N  N  L  S  Y  P  Q  S  *  G  *  G  L  C  K  S  Y  P  P  *  I  R  H  V  G  L  H  H  L  V  C  R  C  S  C  N  G  Y  R  Y  T  I  P  H  Q  Y  K  C  K  S  H  R  Y  S  *  S  C  M  E  P  A  F  I  S  W  K  P  P  L  *  F  S  S  L  I  *  H  L  W  L  L  E  K  D  T  E  T  D  L  E  E  S  I  L  F  D  F  P  I  F  L  V  Q  L  C  E  C  T  K  S  G  S  K  N  S  K  G  F  *  T  D  M  I  *  V  I  L  S  S  S  *  K  G  S  Q  V  K  C  L  M  F  V  Y  T  I  F  K  F  E  K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90158" stop="90119"/>
                    <exon start="90068" stop="89897"/>
                    <exon start="89729" stop="89645"/>
                    <exon start="88472" stop="88338"/>
                    <exon start="87557" stop="87333"/>
                    <exon start="87250" stop="87068"/>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AELAKPHLPESNFLQDFNKKVIFKKNSRTQVSQEAIFTVILQDLAMKKGSFAPNLKLSLPPPDEVALSKFLTESGTFKDGDLLVNRDGVRIVSQSEVAAPSVIQPSDNQLCLADFEAVKVIGKGNGGIVRLVQHKWTGQFFALKVIQMNIDESMRKHIAQELRINQSSQCPYVVICYQSFFDNGAISLILEYMDGGSLADFLKKVKTIPERFLAVICKQVLKGLWYLHHEKHIIHRDLKPSNLLINHRGDVKITDFGVSAVLASTSGLANTFVGTYNYMSPERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84434" stop="84183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPISPYEIILETYQLIKDLSETTSLTHKAKGKVYVNPTLLRFDMWDYTTWYAVVPVMVIVILYPININVSHIDIANPVWNQPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="86778" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="83916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="0.997"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86778" e_stop="86431" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="84781" e_stop="83916" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86778" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86318" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84441" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCATCAAGGATCTATCAGAAACAACCTCTCTTACCCACAAAGCTAAGGGTAAGGTCTATGTAAATCCTACCCTCCTTAGATTCGACATGTGGGATTACACCACTTGGTATGCCGTTGTTCCTGTAATGGTTATCGTTATACTATACCCCATCAATATAAATGTAAGTCACATAGATATAGCTAATCCTGTATGGAACCAGCCTTCATAAGCTGGAAGCCTCCATTATAATTCAGCTCGCTCATTTGACACCTCTGGCTGTTGGAAAAAGATACAGAAACTGATTTAGAAGAAAGCATACTATTTGATTTCCCCATTTTCTTGGTACAGCTGTGTGAATGTACAAAATCTGGGAGTAAGAACTCAAAAGGGTTCTAGACAGATATGATTTAAGTCATTCTTAGCTCTTCCTAAAAGGGTAGTCAAGTTAAATGCTTAATGTTTGTATACACAATTTTCAAGTTTGAAAAAGAAAAAA</gDNA_template>
            <first_frame> F  S  L  L  N  F  R  A  K  S  K  L  D  K  Q  I  E  I  E  G  A  L  Q  S  A  Y  A  K  N  L  Q  V  A  A  D  V  L  L  F  A  I  A  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M  *  N  F  *  D  P  I  S  P  Y  E  I  I  L  E  T  Y  Q  L  I  K  D  L  S  E  T  T  S  L  T  H  K  A  K  G  K  V  Y  V  N  P  T  L  L  R  F  D  M  W  D  Y  T  T  W  Y  A  V  V  P  V  M  V  I  V  I  L  Y  P  I  N  I  N  V  S  H  I  D  I  A  N  P  V  W  N  Q  P  S  *  A  G  S  L  H  Y  N  S  A  R  S  F  D  T  S  G  C  W  K  K  I  Q  K  L  I  *  K  K  A  Y  Y  L  I  S  P  F  S  W  Y  S  C  V  N  V  Q  N  L  G  V  R  T  Q  K  G  S  R  Q  I  *  F  K  S  F  L  A  L  P  K  R  V  V  K  L  N  A  *  C  L  Y  T  Q  F  S  S  L  K  K  K  K </first_frame>
            <second_frame>  F  L  Y  L  I  S  V  P  S  Q  N  *  T  N  K  L  K  *  R  E  H  Y  N  L  P  M  L  K  T  S  K  L  L  L  M  F  C  C  L  L  *  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E  C  K  T  F  K  I  P  F  L  L  M  R  S  F  *  R  P  I  N  S  S  R  I  Y  Q  K  Q  P  L  L  P  T  K  L  R  V  R  S  M  *  I  L  P  S  L  D  S  T  C  G  I  T  P  L  G  M  P  L  F  L  *  W  L  S  L  Y  Y  T  P  S  I  *  M  *  V  T  *  I  *  L  I  L  Y  G  T  S  L  H  K  L  E  A  S  I  I  I  Q  L  A  H  L  T  P  L  A  V  G  K  R  Y  R  N  *  F  R  R  K  H  T  I  *  F  P  H  F  L  G  T  A  V  *  M  Y  K  I  W  E  *  E  L  K  R  V  L  D  R  Y  D  L  S  H  S  *  L  F  L  K  G  *  S  S  *  M  L  N  V  C  I  H  N  F  Q  V  *  K  R  K   </second_frame>
            <third_frame>   F  F  T  *  F  P  C  Q  V  K  T  R  Q  T  N  *  N  R  G  S  I  T  I  C  L  C  *  K  P  P  S  C  C  *  C  S  V  V  C  Y  S  Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  V  K  L  L  R  S  H  F  S  L  *  D  H  F  R  D  L  S  T  H  Q  G  S  I  R  N  N  L  S  Y  P  Q  S  *  G  *  G  L  C  K  S  Y  P  P  *  I  R  H  V  G  L  H  H  L  V  C  R  C  S  C  N  G  Y  R  Y  T  I  P  H  Q  Y  K  C  K  S  H  R  Y  S  *  S  C  M  E  P  A  F  I  S  W  K  P  P  L  *  F  S  S  L  I  *  H  L  W  L  L  E  K  D  T  E  T  D  L  E  E  S  I  L  F  D  F  P  I  F  L  V  Q  L  C  E  C  T  K  S  G  S  K  N  S  K  G  F  *  T  D  M  I  *  V  I  L  S  S  S  *  K  G  S  Q  V  K  C  L  M  F  V  Y  T  I  F  K  F  E  K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84434" stop="84183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPISPYEIILETYQLIKDLSETTSLTHKAKGKVYVNPTLLRFDMWDYTTWYAVVPVMVIVILYPININVSHIDIANPVWNQPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="94209" PGL_stop="97644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94209" e_stop="94590"/>
            <exon e_start="96912" e_stop="97644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94209" e_stop="94590" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96912" e_stop="97644" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94209" stop="94590"/>
              <exon start="96912" stop="97241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94229" stop="94590"/>
              <exon start="96912" stop="97436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94229" stop="94590"/>
              <exon start="96912" stop="97368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94234" stop="94590"/>
              <exon start="96912" stop="97479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94234" stop="94590"/>
              <exon start="96912" stop="97061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94240" stop="94590"/>
              <exon start="96912" stop="97367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94241" stop="94590"/>
              <exon start="96912" stop="97116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96987" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97207" stop="97644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97246" stop="97644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCATTAGGGTTCAATTCTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT : GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTTATTTTCGAATTTGATTTAATATAAATATTTTCATGATAGA</gDNA_template>
            <first_frame> I  F  I  R  V  Q  F  S  T  Q  S  K  N  R  H  E  T  S  F  T  *  Q  C  D  K  C  S  R  R  F  H  L  V  G  G  V  G  P  V  D  G  G  I  S  S  V  A  S  H  R  R  S  *  R  N  C  E  V  M  G  P  E  *  L  R  L  C  S  N  F  H  R  S  L  S  R  R  C  I  C  C  Y  T  S  Y  S  *  N  C  C  I  C  F  Y  R  *  L  Y  *  S  F  *  G  *  Y  *  *  H  Y  C  Y  S  R  S  S  S  F  *  S  L  A  I  A  I  *  S  K   : W  *  Q  S  G  S  S  W  R  W  *  F  I  S  Q  G  V  G  Y  *  S  V  G  T  C  Y  H  D  V  H  S  S  S  R  S  P  T  T  I  *  *  K  H  Q  Q  E  I  C  P  F  S  C  M  E  S  *  W  *  S  S  C  L  W  I  S  *  W  D  Y  L  C  F  *  C  S  S  R  Q  V  P  S  L  L  R  W  P  Y  H  A  C  S  F  S  R  V  F  T  F  T  S  R  L  K  N  T  L  L  S  I  R  *  R  S  C  A  Y  V  *  C  *  G  E  N  I  A  H  V  F  I  G  S  C  K  L  G  S  E  C  *  Y  L  S  R  R  G  S  N  C  N  G  V  K  *  Q  D  G  *  A  M  G  S  *  D  E  S  G  Y  A  N  F  N  Q  P  Y  R  S  G  L  G  C  G  F  W  T  N  I  K  D  *  C  *  V  L  Y  A  C  K  C  V  *  *  Q  E  F  I  I  L  S  V  L  L  T  V  A  A  I  A  C  F  V  C  W  Y  D  V  S  R  K  Y  L  T  Y  F  R  I  *  F  N  I  N  I  F  M  I   </first_frame>
            <second_frame>  F  S  L  G  F  N  S  L  P  N  P  K  I  A  M  K  L  A  S  L  D  S  V  T  N  A  H  D  D  S  I  W  S  A  A  W  V  R  S  T  E  E  Y  P  A  L  L  L  T  G  G  L  D  E  T  V  R  L  W  D  P  S  N  F  A  C  V  Q  T  F  T  G  H  C  L  G  V  V  S  V  A  T  H  P  T  R  R  I  A  A  S  A  S  I  D  S  F  I  R  V  F  E  V  D  T  N  N  T  I  A  T  L  E  A  P  P  S  E  V  W  Q  L  Q  F  S  P  S  :  G  S  N  L  A  A  A  G  G  G  S  S  S  V  K  V  W  D  T  N  R  W  E  L  V  T  T  M  S  I  P  R  Q  G  A  P  Q  P  S  D  K  S  T  N  K  K  F  V  L  S  V  A  W  S  P  D  G  S  L  L  A  C  G  S  V  D  G  T  I  S  V  F  D  V  A  R  A  K  F  L  H  F  L  D  G  H  T  M  P  V  R  S  L  V  F  S  P  S  L  H  D  S  R  I  L  F  S  A  S  D  D  G  H  V  H  M  Y  D  A  E  G  K  T  L  L  T  S  L  S  G  H  A  S  W  V  L  S  V  D  I  S  P  D  G  A  A  I  A  T  G  S  S  D  K  T  V  R  L  W  D  L  K  M  R  A  A  T  Q  T  L  T  N  H  T  D  Q  V  W  A  V  A  F  G  P  T  S  R  T  D  V  R  S  C  M  L  A  S  V  S  D  D  K  S  L  S  F  Y  Q  Y  S  *  Q  L  Q  P  L  H  A  L  Y  V  G  M  M  S  Q  E  N  I  *  L  I  F  E  F  D  L  I  *  I  F  S  *  *  </second_frame>
            <third_frame>   F  H  *  G  S  I  L  Y  P  I  Q  K  S  P  *  N  *  L  H  L  T  V  *  Q  M  L  T  T  I  P  F  G  R  R  R  G  S  G  R  R  R  N  I  Q  R  C  F  S  P  E  V  L  T  K  L  *  G  Y  G  T  R  V  T  S  L  V  F  K  L  S  P  V  I  V  S  A  L  Y  L  L  L  H  I  L  L  V  E  L  L  H  L  L  L  *  I  A  L  L  E  F  L  R  L  I  L  I  T  L  L  L  L  S  K  L  L  L  L  K  S  G  N  C  N  L  V  Q  V :   V  A  I  W  Q  Q  L  E  V  V  V  H  Q  S  R  C  G  I  L  I  G  G  N  L  L  P  R  C  P  F  L  V  K  E  P  H  N  H  L  I  K  A  P  T  R  N  L  S  F  Q  L  H  G  V  L  M  V  V  F  L  L  V  D  Q  L  M  G  L  S  L  F  L  M  *  L  A  P  S  S  F  T  S  *  M  A  I  P  C  L  F  V  L  S  C  F  H  L  H  F  T  T  Q  E  Y  S  S  Q  H  Q  M  T  V  M  C  I  C  M  M  L  R  G  K  H  C  S  R  L  Y  R  V  M  Q  V  G  F  *  V  L  I  S  L  Q  T  G  Q  Q  L  Q  R  G  Q  V  T  R  R  L  G  Y  G  I  L  R  *  E  R  L  R  K  L  *  P  T  I  Q  I  R  F  G  L  W  L  L  D  Q  H  Q  G  L  M  L  G  P  V  C  L  Q  V  C  L  M  T  R  V  Y  H  S  I  S  T  L  N  S  C  S  H  C  M  L  C  M  L  V  *  C  L  K  K  I  F  D  L  F  S  N  L  I  *  Y  K  Y  F  H  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94210" stop="94590"/>
                    <exon start="96912" stop="97544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLGFNSLPNPKIAMKLASLDSVTNAHDDSIWSAAWVRSTEEYPALLLTGGLDETVRLWDPSNFACVQTFTGHCLGVVSVATHPTRRIAASASIDSFIRVFEVDTNNTIATLEAPPSEVWQLQFSPSGSNLAAAGGGSSSVKVWDTNRWELVTTMSIPRQGAPQPSDKSTNKKFVLSVAWSPDGSLLACGSVDGTISVFDVARAKFLHFLDGHTMPVRSLVFSPSLHDSRILFSASDDGHVHMYDAEGKTLLTSLSGHASWVLSVDISPDGAAIATGSSDKTVRLWDLKMRAATQTLTNHTDQVWAVAFGPTSRTDVRSCMLASVSDDKSLSFYQYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 260 chains have been computed
$ 
$ memory statistics:
$ 593832 bytes spliced alignments in total
$ 163 spliced alignments have been stored
$ 3643 bytes was the average size of a spliced alignment
$ 31136 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1831 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 284 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 08:47:17
-->
