<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:25:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582753" ref_strand="+" ref_description="SGN-U582753 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|169977312|emb|CAQ18903.1| (e_value=5e-180) chromomethylase; (*ATH) AT1G69770.1 (e_value=4e-138) | Symbol: None | chromomethylase 3 (CMT3), nearly identical to chromomethylase CMT3 (Arabidopsis thaliana) GI:14583092, GI:14647157 | chr1:26251990-26257248 REVERSE | Aliases: T6C23.3, T6C23_3; (*SWP) sp|Q9AXT8|CMT1_MAIZE (e_value=3e-147) DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A; ">
      <seq>cagagaaaatcagtgagtttgtggtgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtgggttcaatcgttttaggaataaagaaaatccgatgcaggatcccaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaatgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgtagggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgttttcatgtttggagctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtgaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcagtcagggatctcgagttaaagaaagaactctttcttggtgatgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcattcaattccatgtaacatttcaagttgtaaactgtcagaaaacatttagacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17834" stop="14382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17533" g_stop="17475" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="389" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="458" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="545" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="633" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16315" g_stop="16227" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="722" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="827" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="871" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="941" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1045" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15120" g_stop="14682" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1484" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U582753" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17533" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</genome_strand>
        <mrna_strand>CAGAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTCAGAAAACATTTAGACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582652" ref_strand="+" ref_description="SGN-U582652 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|115451683|ref|NP_001049442.1| (e_value=2e-34) Os03g0226800; (*ATH) AT1G69770.1 (e_value=3e-28) | Symbol: None | chromomethylase 3 (CMT3), nearly identical to chromomethylase CMT3 (Arabidopsis thaliana) GI:14583092, GI:14647157 | chr1:26251990-26257248 REVERSE | Aliases: T6C23.3, T6C23_3; (*SWP) sp|Q9ARI6|CMT2_MAIZE (e_value=9e-15) DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5; ">
      <seq>gctctctcttatattccctcatcctcccgccactgtacacactgcacgttcgccgccgccgctgcgacctactacttcatcttttcagatatcccaatgccaagcaaacggaaatcttctccggctacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaagaccagatccagtagtagctcaaccatctgattccgattttgaaccggaacctgttttatcatcaaagaagaaatccacgagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccaactgttgaaaaggcagaatctggtgtagcttcaccagctgatagagatttcgtatctgagtctgattcggagacgccgagcaagaaatccacgaggcgagctgcagtaaaggtggaacctttggtggattctgtagctgggagtgattttgtggaagaggaagaagtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttccaaaaggaagcctaagagggctgagaaagttaaagatgaagagtgtgtacttgccggtgaccctgttccggatgcagaagctagactgaagtggcctcatcgctataataaagggaaagaaaatggtaccaagagcttaaatggtcaagatgatccggaccagttaattcaagctaagtgccattttagtcgagcagatgttgatggtcagatatattatctcgaggatgatgcacatgtgaaggctgctgatggtgaggacgattacatttgcaagattgttgaattctttgaagcagttgacggagtgcagtatttttacagctcagtggttttacagagctaaggatactgttattaaaagccatgatcagttcattgacaaaaaacgtgtattcctttctgaaatcaaggatgacaatcctcttgattgccttgtgaccaaactaaagattgttcctgtgcccctcaatgcaacttcacagttcaagggaaaatgtaaaatcaaattgtgatttctactatgacatgaagtacttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21765" stop="18290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21465" g_stop="20809" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20537" g_stop="20500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="695" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20406" g_stop="20307" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="795" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20306" i_stop="19051" i_length="1256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19050" g_stop="18943" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="904" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83">
            <donor d_prob="0.793" d_score="0.96"/>
            <acceptor a_prob="0.487" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18859" g_stop="18740" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="1024" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80">
            <donor d_prob="0.706" d_score="0.94"/>
            <acceptor a_prob="0.820" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18659" g_stop="18590" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1025" r_stop="1095" r_length="71" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U582652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1093</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21465" e_stop="20809"/>
          <exon e_start="20537" e_stop="20500"/>
          <exon e_start="20406" e_stop="20307"/>
          <exon e_start="19050" e_stop="18943"/>
          <exon e_start="18859" e_stop="18740"/>
          <exon e_start="18659" e_stop="18590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCTTATATTCCCTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTA-TTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCACAGTTCAA-GGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTC</genome_strand>
        <mrna_strand>GCTCTCTCTTATATTCCCTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT...................................................................................GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCCTCAAT................................................................................GCAACTTCACAGTTCAAGGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570973" ref_strand="+" ref_description="SGN-U570973 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157348018|emb|CAO22605.1| (e_value=3e-29) unnamed; (*ATH) AT3G63390.1 (e_value=1e-25) | Symbol: None | expressed protein | chr3:23422141-23422943 REVERSE | Aliases: MAA21.20; ">
      <seq>gcaactctttctctctatcaatttgtagatgcatttactggtgatgatatcaattcagccttgagaaaactactttgagtatcctgatattggtttcgtctcttcaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgaatctcaagtcactcaacaatgtgaatctggagctaggattggttgctctatcgcagcctcagacaaatgtaaaactccttggtggaaatcattcactggcagtgcttccaatcaagactttgcagagagggcgagatgcgaagaacgtgaaatggaggcttgccttgaagcagcaaatgggaagtgccatgaatttgcaaagcagaagtgcttcccagcatttcgtgatgcatggattggtgtaaaaggattgagtcccaaagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="22298" stop="25061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22597" g_stop="22624" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24111" g_stop="24761" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="679" r_length="651" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U570973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22597" e_stop="22624"/>
          <exon e_start="24111" e_stop="24761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCTTTCTCTCTATCAATTTGTAGGTATGTTTATGGTTTGTTCGTTCATTTTTTAAAAAATATATTCTTCAACTTTTTATTTTTAAACTTAATTGGAATGGAATGTTCTGTTTGGATAGTGTTCTTTTGGTAAAATATATCTGTTTGATTGTTCACTCTATGTGCAAGTTTACATGTTTCTCGATTGAGATCTTTAAAGGAAATGAAGCAAACACTATTCCAATTCACAGTAAACAAGATTCATTGATTGTATTATTACTCTAATAAACTGAAATAAGGAATATAAGCATTACTATTATTTATTGATTGGAAGGATACAAGGATAAAGAAATTAGATTAGAAAGAAGATGAAAATCCCAAAACCTTTGTCACGTGCTTCCGTACTCAACCTGGATCCCAAGTAAGTCCCTAGTTCGAATAACTGGTCAATAAGAATTATGTGAGTTGTCCATGTCATTTATATACAAAAATTAAACTTGGAAAGGGATTTCTGAGATCCCCTGATGAAGATATCAGCGATGGGAATTCGGCAACAATTTTGTTGGGCGTGCAAACAAAGTGGTAGCTTAAAAAGACTGGAAAGCTACATATGAGGTGTGTGAGGCCTTTTGAAAAAAAACCATGTGGATTTGGCCAAAGCGGACAATATTACACCATGTTAAAAGCTTCATTCAGTTGATTTAGCCAACAAAACTTAAGGTGGCTATGGTTTTGATCTTCTTCCCTAACTGCATCTCCTTGACTCGTACTGCCAACACAGCTGCTTTTCCTTTTAGCTACATATACCACTCTTCATCATCTTTCCCTGCCTCACTGAATGTTGATCTGGTTGTTTTGCTTCTGTTTGTTTCTAAACTGAAGTCCTCTGAGTGAAGCGCTCAACAGTAATACATACCTCTATGCATAGAAATGATATAACATTCTGAAATGATTTAAAGATTACATGAAAATGCTTTTAATGCTTATTGTTTTTATTTATTGATCTTATGAAATGTAACACTTATCGTATATCATGAATTTTATGTATCCCTTAAAGTATCGTTCCAACCTTATCGAAAGGAGACAGCGATACTTAGGGGGGTACAATTTTTTATATTGTACCCAGCCCCTTCTTCCCGCGGGCATATACATATTATCAGTTTATTCAGTCCCCTGCAGTTTATGTCACTTGGCATGATTCCATGAAGTATGAGCCCCTTGTGTTGGGAGAACTTCTAGATACTCGTGATATAGACACTTTGTGGTGTTTGAATTTGGGATGTTTTCCAATGAAGTTTTTTCCAAAACAACTCTCATGTCTATTTCAAAAACCAAACTTGTTATTGGAAGACAATCCAAAAACGTTGATGGAGTACCAGTAGCAAAAAATTCTGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAG</genome_strand>
        <mrna_strand>GCAACTCTTTCTCTCTATCAATTTGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577307" ref_strand="+" ref_description="SGN-U577307 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157337674|emb|CAO22020.1| (e_value=0) unnamed; (*ATH) AT3G13670.1 (e_value=0) | Symbol: None | protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain | chr3:4469229-4473696 FORWARD | Aliases: MMM17.17; (*SWP) sp|P40234|CKI2_SCHPO (e_value=5e-48) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe GN=cki2; ">
      <seq>gcttttgttgatatttcttttggatgtttcttcaacaaaccctagcatcaagacctctttaatcttactgctcattcatctttctatttgtttcgatcgctgttgaaaacttgttgaagaattcaaacgatcaattttgtattgatgatggtcactttgggttttgttctacttgcattgtttgtaaagaacgctaatgcctgtaggtgttgaaaaaccagcagccagcgggaagggaagaagtttcgtaaagacctgtgctgctaaggcaaaagcagaagagttgaagaggaaatgggggatcagagcggtgggttgagtgctaataacaaaggaactgagcaagatgatgatggtaaaaactctcctatccctaaaaaggtgaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagcgtgcattataaagggagggtaggagactattacgtaatggttatggacatgctagggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactctgcaggagaagaagttgttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttgattttctttatccaagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcacaaaattacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="26386" stop="36507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26685" g_stop="27065" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28092" g_stop="28220" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="510" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28331" g_stop="28404" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="584" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28490" g_stop="28559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="654" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30422" g_stop="30477" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="710" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30633" g_stop="30704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="782" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30852" g_stop="30946" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="877" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31030" g_stop="31096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="944" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31183" g_stop="31312" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1074" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1293" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1430" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1431" r_stop="1605" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1606" r_stop="1696" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1697" r_stop="1854" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="35518" g_stop="35706" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1855" r_stop="2043" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="35966" g_stop="36207" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="2044" r_stop="2286" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U577307" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26685" e_stop="27065"/>
          <exon e_start="28092" e_stop="28220"/>
          <exon e_start="28331" e_stop="28404"/>
          <exon e_start="28490" e_stop="28559"/>
          <exon e_start="30422" e_stop="30477"/>
          <exon e_start="30633" e_stop="30704"/>
          <exon e_start="30852" e_stop="30946"/>
          <exon e_start="31030" e_stop="31096"/>
          <exon e_start="31183" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35706"/>
          <exon e_start="35966" e_stop="36207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAGGTGGGTTCTTTGTGATTTCATTGTTTTTTTTGTATACATGCTTAAAGCCATCAACCATAAGGTGTAAACCTGAACAGAGCTGAGGCAATGGCCGCTGTCGATGATACAAGATTTCAATCTAGGGGTTCCGAAAAAAAAAGTTGTAGTCCTTGGTATTTGAACTTAGGAACCCCTAAACCACTAAGCCATCCGCTAGTCTATCAGAAGATTCAAAATCTATATGATACGTAAATAAAAAATAACCACTGTGCAAATGTTGAGGGAATTCGGATGAACACCCTCACGCCCTTGGCTACCTCCTACCAATATAGGTACATGATGACTTTGCTTTTACCAAGACTTAGACAAATGAGAAGAAGTCAAGTAGCTTTTTCGTATATTTGAACCTTGGTCTCCAAGTTTTTAGTCCACTTCATTGACCTCTTTATGACAAGCTTGGGTGCTAAATTCTTAATGTTGTCGACTCGTGGCACGTGACGTGTAATATAGCTTGTCAAAATTATTTTATCGTTCGAAACTTTATAAATTAATTAACTATGCCTCATTCCATAATTAGCAGGAACCAGCTAATGATACATTGGTGTCCGTTGGTTAGTTAAAGTTTGACTATTTGTATGATGGCTGTCAACCTATTGCAACCCTCCTCCTACATGTGAATCTCAAATAGACCGATTAATTATTTTATTTAGCATGTTCTTTTATATGATTGAGTGGTCAAAGAAAAAACTTTTCCAATTAGGAATCATTATCATCAAATTCCAAACATAGTATTATGTCGTTCTCTTGTGCATTGTTTTGATTATATTAGCCACTCTAGTTAGATTAGTTATAAGCTTGTGATTTTATGAACTTAAGGAATGAAGATAGAAGCATCATATTTGTATGAAGGTTACTTATGAATTGAATTGCTTGCATTTGGATTTGCTGTAATTGCAACTTTAACCATTTTCTGCTTTGATGAATCCAGCAGGGATTTAACTTGTAAAGTGAACTTATCTTTTGTTTCTGGTTGAATTTGACTTTCAGGTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGC-AAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAAT</genome_strand>
        <mrna_strand>GCTTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592207" ref_strand="+" ref_description="SGN-U592207 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147766588|emb|CAN69523.1| (e_value=4e-55) hypothetical; (*ATH) AT3G13670.1 (e_value=1e-55) | Symbol: None | protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain | chr3:4469229-4473696 FORWARD | Aliases: MMM17.17; (*SWP) sp|P29295|HRR25_YEAST (e_value=1e-13) Casein kinase I homolog HRR25 OS=Saccharomyces cerevisiae GN=HRR25; ">
      <seq>ggttcggtatgcttgtgctcatgcacacttgggaaggagtgccactggaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgcttcgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataacgcctatcaacactgctggtgcgcacaccattcttcaagttggccaaaagcgggggagattaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30890" stop="32066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31189" g_stop="31312" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="343" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31766" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="382" r_length="39" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U592207" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31189" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATT-AAATGT</genome_strand>
        <mrna_strand>GGTTCGGTATGCTTGTGCTCATGCACACTTGGGAAGGAGTGCCACTGGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTCGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAACGCCTATCAACACTGCTGGTGCGCACACC........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568128" ref_strand="+" ref_description="SGN-U568128 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341509|emb|CAO62064.1| (e_value=3e-101) unnamed; (*ATH) AT2G44150.1 (e_value=8e-97)  Symbol: None | SET domain-containing protein (ASHH3), low similarity to huntingtin interacting protein 1 (Homo sapiens) GI:12697196; contains Pfam profile PF00856: SET domain; identical to cDNA ASH1-like protein 3 (ASHH3) partial cds GI:15488419 | c... ; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=7e-96) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3; ">
      <seq>cgggaaccggtcaaggttgaaatttaactgggatgagcaataacaggctaagtggtcattagctcagatcagcttttcaggttatagtcaatcagtgttatatccagtgccagtcaaggtgatgcctgctatgaagactgctattcatggtgggattgggcacgtattcagcaaactaataaaggagattggtgatcctgttgactttgaacttccagattggttaaataaatggcagtcaatgccctatacctttattaagcgcaatatatacctcactaagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagctcaacggcagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaagactgaaaaatgtggctctggaattgtggcagatgaagatatcaaacgaggagactttgttatagagtatgttggagaagttattgatgacaaaacatgtgaagagaggctttggaaaatgaagcatagtggagaaacaaacttctacttgtgtgaaatcaatcgggatatggtgattgatgccacttacaagggcaacaaatcccgatacattaatcatagttgttgtccaaatactgagatgcagaaatggatgattgatggtgaaacaagaattggcatatttgcaacacgagacattaaaaggggcgagcatctgacctatgattaccaatttgttcagtttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="57554" stop="49116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57253" g_stop="57183" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="80" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56831" g_stop="56776" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="136" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="54990" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="266" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54730" g_stop="54619" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="378" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52354" g_stop="52255" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="478" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49956" g_stop="49878" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="557" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49877" i_stop="49782" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.468" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49781" g_stop="49610" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="729" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49609" i_stop="49502" i_length="108">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49501" g_stop="49421" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="810" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49420" i_stop="49292" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.305" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49291" g_stop="49275" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="827" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U568128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57253" e_stop="57183"/>
          <exon e_start="56831" e_stop="56776"/>
          <exon e_start="55119" e_stop="54990"/>
          <exon e_start="54730" e_stop="54619"/>
          <exon e_start="52354" e_stop="52255"/>
          <exon e_start="49956" e_stop="49878"/>
          <exon e_start="49781" e_stop="49610"/>
          <exon e_start="49501" e_stop="49421"/>
          <exon e_start="49291" e_stop="49275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAGGTACACTCAAGAAATACTATGAATATAGATGAAGTGGTGGATAACGTATGGCGGAGAAAACTGAAGAGTCGAAATTCTATACTTGTCTTAAGATTATCCATTAAATGAGAGTAGCATGTGAAAGGAAGTGGTAATTTTGTGGTTGCATTATCAGAAACTTCATTGTCCCAGCAATGGCATAAATAAAACTGCTGAAGTCCTTAATTTATGCATTTTATTTTCATGAACTTCTTTTTAGTCTGCAATTTTATACTGATTGATGTGGTATTTTGTAAATCTTAATCTGCAATTTTCTACTTTGTATATCAGCTTCTCTGCACATCAATTGATTCCTTGTTTTACCATTATTAGGTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAGGTTCAGATACTAACTTTTTCTGGTTCATACTCTTTGTCTGCATGTTGTCTATATCAATTTAACTTACAGAGATATTATGTCGAGTGATATCATATGCTGTGCTATATACTTATAATAATTATATTATGTGCTATACAAGTTACATTTTTTGTTCTACATATTTGAATCTCAATAATTTCTGCTCCCTCTTGGTATTTTTGTAATCAATGAAGCAACATAACTAGACCTCTAAAGGAGAAGATTTGGTGCGAGGCATTTGGTAAAGTCAGGACGTTTTGATATACTGCAAATTAAATAGTAAATTGACAGCTGCTGTAGTGACTCCAGTAAAGCCAAAAGACTAGCTAGCAGCTAGCCAGTGGCTTGAATTCAAGTCTGAGTTCAGTTCCTATCGAGGATAAAAGTGGGAATATTTATTTTGGAAGCATTAGTTTCTTCATTACCGCGGTGGGGACGAGTTCGCTTTTTCTACTTTCCATGGGTTAGGGGTGGGTGGTGTTTGCAGGTTTCGATTGGAACTCCAATTTGTCAAAATGCATTTTTCACAGCTTTAAATCATAAAATGCCCACTCCCTTGGACATGGTGATGTCCACTTAAATAATAGAATTGGGCATCCGAGTGTTGAAGACCAGAAAGAGTCAAATACGAGCATTCCTAGTGGACAATCGAGGAAACAAAACTTTCCTCCGAAGCTAATTAGGGATTCCTTTTTTCCCGGTTAATAATTAGGGGTTCCATTGCAATATATTTTCCTTGTAGTTCTACTCCAATTCAAGAAGTCTGAAACTTTTTCAAGTTGGTGATTCAGTAGCTTTTAGAACATATAATTTCTTATTCTGCTGGCTGGTTTGTCTGATTTAGGCATTTGCTTTTGTCTCCACATTCGTCCTTCATGTTTGCGAAATGTGAAGAAGAGAGTTTAATGATTTTTAATCCTGTTCGATTTAAATATATAGGAAATTGAGATACTCTTTTATGTTATTTGCATGACTAGCTAATATAGGCGAACATAGTGGATATGTAATCCTTGATTTCAATCCATCCACTACACACTTCCAGTCCTATGTGATGGTTCCATTTTCCTTTTTCCTATTTATTTTAGTGAAAGATCCTTGCATTTTATGTTGGCCTGAGATGCACCCAAGGGGGTGTGTGGCTTAGTGGTTAATGAAGTGGTTGAAAAACCATGAGATCTTGGGTTAAAATCCTAGTGGATGCAAAAAACATGGGGCAATTTCTTTCCATTTGGTTATGTGGCACGTGCCTTGGGCCATGTCCTTATGCTGATTGTGAAATTTTTTTGCCCGTAGTGCCGACAATGTTTGTTGGAACATTTTTTGAGTTAAATTTTGTAGTAGTTTTTATTTGATTATTATATTTGTAATTATTTTGATAATATATTGTAGCTAGAAAGATCCACTTAATGTAATTACAAAGCCCATTCCTTTTGTTTTTTTGGATGTTGGATTGTATTTAAGAAAAAATGGTTCTCTATGATTTAGTTCTTGAGCTTCTTTTACTTATTGACATATATAAAAAGTTGGGAATGCCATTGCTGATTCCGATCGTCTCAATCAATTGATTGGGAAGAGATTACTTTAGAATGCAAAAAAATATATCATCTTGTTAATATGCCTTTTTCTTTCCGTGGCCAGACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCAGTATCCTTTCATTTGATGGTCTTGATATTTGTGACCTATGATATTCTTCACCTATCTATTAGATGTTCTTTCATATTGTGATAGTTTACATCTTACACGTACACTGTTCACTTCTGCATCTCTTGGATAAGATCTTTGTGCTTCATCTCATTTCCTTTTTCATTAAGGTTTTCTGTCTGACCTTCATAGTCCTTTATCTTTGTGATCTTTCTTTGTATCCTCTTTTTTTTCCTCTTCTGTTGGTATTAACTACTTGAAGATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAGGTGAGTTATTTCACTTTTTGATTATATTTTGAGGAATAATTTATGTTTTGTGCATTCTGAACTTCATTTAGCAAGGAAATATGCTTACCACTGCAGTTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATGGTATAGAAATAGCTAAATAATTAATCGTACTTCTATATTCTCAACCTCCATTCCCAGAGATTCAACTCTATATTACATTTCATTTCCATGTCCGCCTTTTTCTTTTAGGATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCAGTATGAAGCTGCTCTTTAATTTTACTTATTTCTTTTCCACCTGTAAGGTGTGCAGTGTGTTATTCTTCTGAGAGATTAAATAAACCTTCTTGGAATGTACATTGCATTTGAATCTAACAAGTGTAGCAGGTTTGTTCAGTTTGGTG</genome_strand>
        <mrna_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAGTGGTCATTAGCTCAGATCAGCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA...................................................................................................................................................................................................................................................................ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG................................................................................................TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG............................................................................................................GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCA.................................................................................................................................ATTTGTTCAGTTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U604720" ref_strand="+" ref_description="SGN-U604720 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gagataattgtgtgtaattatatatcataggtgcatgttgcctagcaaaggtaaacgactttcataattatgttacaatctccatataattagaattgtaattatgtgacaagtatacaacaatttcaacatctcacttaattaaactcccttaattatattagtataagggttatattctagaaaatcaatttaagtaattttagaagttaaggaaggagccctaaacctaatattttcctttgtagtctaaatagtgtaatataataatatggtaccgtagattcaaagtggactcctttattttttgagttatttaagttaccttttataatcttcgtccataacaataataacatatttggttagattataagtagggtctatgaagagtagtgcgtacataaatctaagagtttccaatagatctttattttaatgattgctgatatatggagtgataaataatacacgaaatatttgaatatataaaaataatttttttaaaatcaccctttttcttgcactagcttaaaaggagatcaatatgtaatttaaaacaaattttacgtacctagtcatttcgttaaaaaaaatgtattttaagtacatgtgttgttaaaaataatgaactacttagttgttttacaaagaaattaaactcaaagtgatttgatatcaataggaaaaacaaactttgattagtcaaatatgttatgcgtaactaatactacttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="60833" stop="59494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60533" g_stop="59794" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U604720" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60533" e_stop="59794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTA</genome_strand>
        <mrna_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACGAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTAAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U585357" ref_strand="+" ref_description="SGN-U585357 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|23451057|gb|AAN32641.1|AF416732_1 (e_value=1e-51) putative; (*ATH) AT3G55310.1 (e_value=2e-53)  Symbol: None | similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:At3g55290.2); similar to putative short-chain type alcohol dehydrogenase [Solanum tuberosum] (GB:AAK29646.1); contains InterPro domain Gl... ; (*SWP) sp|Q21929|DCXR_CAEEL (e_value=4e-14) Probable L-xylulose reductase OS=Caenorhabditis elegans GN=dhs-21; ">
      <seq>gccggggnnataacttaatggagccgtggaaggaccttaccgggaaagtagtgatggtgacaggggcatcctctggaatcgggcttgagttttgtctggacttggccaaagctggttgcagcataattgctgctgctcgtcgtattgacaggctggaatctctctgcaacgacatgaattcagagggtattcggcgagcatttgccctcaagcttgatgtcatgtccaatggtgccaccatggaggccgctgtagaaagagcttgggatgcctttggacatatcaatgtcttgattaacaatgctggcataagaggtcctgtgagctctccactggaattgtcagaggaggaatgggaacatacctttaacacaaatcttagaggggcatggttgctgtccaaatatgtgtgtagacgcatgcgtgatgccaaattacagggcggaggatctgttattaatatctcttcagtttctggtctgaatcgagtactagtacccgggggtcttgcttacgcttgttcaaagatggctctggacatgcccactaggatgatggcacttgaattgggantacncnatatcanagtgaactcantannaccangagttttcaaatctncanataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="61225" stop="62609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61525" g_stop="61830" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="315" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61831" i_stop="61913" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61914" g_stop="62149" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="551" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62150" i_stop="62231" i_length="82">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62232" g_stop="62309" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="630" r_length="79" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U585357" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61525" e_stop="61830"/>
          <exon e_start="61914" e_stop="62149"/>
          <exon e_start="62232" e_stop="62309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTAATGGAGCCGTGGAAGGACCTTACCGGGAAAGTAGTGATGGTGACAGGGGCATCCTCTGGAATCGGGCTTGAGTTTTGTCTGGACTTGGCCAAAGCTGGTTGCAGCATAATTGCTGCTGCTCGTCGTATTGACAGGCTGGAATCTCTCTGCAACGACATGAATTCAGAGGGTATTCGGCGAGCATTTGCCCTCAAGCTTGATGTCATGTCCAATGGTGCCACCATGGAGGCCGCTGTAGAAAGAGCTTGGGATGCCTTTGGACATATCAATGTCTTGATTAACAATGCTGGCATAAGAGGTAAAAAGTATGATCACATATTTAAATTTCTAAAGAGTATCATCATTAATATATGATATATATATATATATATATATATATAGGTCCTGTGAGCTCTCCACTGGAATTGTCAGAGGAGGAATGGGAACATACCTTTAACACAAATCTTAGAGGGGCATGGTTGCTGTCCAAATATGTGTGTAGACGCATGCGTGATGCCAAATTACAGGGCGGAGGATCTGTTATTAATATCTCTTCAGTTTCTGGTCTGAATCGAGTACTAGTACCCGGGGGTCTTGCTTACGCTTGTTCAAAGATGGCTCTGGACATGCTCACTAGGGTACGTACTGGCTATTGTCTTAAAACGTGCAAGGTCATCACTTGATAAAATGTACATTTATTTTCTTCTCAAATAATGGCAGATGATGGCACTTGAATTGGGAGTACACAATATCAGAGTGAACTCAGTAGCACCAGGAGTTTTCAAATCT-CAGATAACA</genome_strand>
        <mrna_strand>ATAACTTAATGGAGCCGTGGAAGGACCTTACCGGGAAAGTAGTGATGGTGACAGGGGCATCCTCTGGAATCGGGCTTGAGTTTTGTCTGGACTTGGCCAAAGCTGGTTGCAGCATAATTGCTGCTGCTCGTCGTATTGACAGGCTGGAATCTCTCTGCAACGACATGAATTCAGAGGGTATTCGGCGAGCATTTGCCCTCAAGCTTGATGTCATGTCCAATGGTGCCACCATGGAGGCCGCTGTAGAAAGAGCTTGGGATGCCTTTGGACATATCAATGTCTTGATTAACAATGCTGGCATAAGAG...................................................................................GTCCTGTGAGCTCTCCACTGGAATTGTCAGAGGAGGAATGGGAACATACCTTTAACACAAATCTTAGAGGGGCATGGTTGCTGTCCAAATATGTGTGTAGACGCATGCGTGATGCCAAATTACAGGGCGGAGGATCTGTTATTAATATCTCTTCAGTTTCTGGTCTGAATCGAGTACTAGTACCCGGGGGTCTTGCTTACGCTTGTTCAAAGATGGCTCTGGACATGCCCACTAGG..................................................................................ATGATGGCACTTGAATTGGGANTACNCNATATCANAGTGAACTCANTANNACCANGAGTTTTCAAATCTNCANATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577635" ref_strand="+" ref_description="SGN-U577635 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|157328180|emb|CAO17291.1| (e_value=0) unnamed; (*ATH) AT1G02205.2 (e_value=0) | Symbol: None | CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) | chr1:418778-422438 FORWARD | Aliases: None; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=6e-101) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2; ">
      <seq>gtaaacggacatggcttctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttgacaaatttaaaagaccattattacctaaacacaaacatataaagatccatttttcattacaaaaatcaactttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68510" stop="64984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68210" g_stop="68141" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="282" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="515" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67153" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="735" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67070" g_stop="66689" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="1117" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66615" g_stop="66508" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1118" r_stop="1225" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66368" g_stop="66165" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1226" r_stop="1429" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66070" g_stop="65969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1430" r_stop="1531" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65882" g_stop="65709" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1532" r_stop="1705" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65624" g_stop="65284" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1706" r_stop="2046" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U577635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2046</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68210" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67153"/>
          <exon e_start="67070" e_stop="66689"/>
          <exon e_start="66615" e_stop="66508"/>
          <exon e_start="66368" e_stop="66165"/>
          <exon e_start="66070" e_stop="65969"/>
          <exon e_start="65882" e_stop="65709"/>
          <exon e_start="65624" e_stop="65284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACGGACATGGCTTCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACTATAAT</genome_strand>
        <mrna_strand>GTAAACGGACATGGCTTCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAAGATCCATTTTTCATTACAAAAATCAACTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577341" ref_strand="+" ref_description="SGN-U577341 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147781102|emb|CAN60676.1| (e_value=3e-58) hypothetical; (*ATH) AT1G02205.2 (e_value=7e-55) | Symbol: None | CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) | chr1:418778-422438 FORWARD | Aliases: None; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=2e-19) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2; ">
      <seq>gggatgtattttgacagcatttattcatccggttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67689" stop="66495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67389" g_stop="66795" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U577341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67389" e_stop="66795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATG</genome_strand>
        <mrna_strand>GGGATGTATTTTGACAGCATTTATTCATCCGGTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574777" ref_strand="+" ref_description="SGN-U574777 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|157087398|gb|ABV21586.1| (e_value=0) fatty; (*ATH) AT3G12120.2 (e_value=2e-166) |; (*SWP) sp|P46313|FAD6E_ARATH (e_value=2e-165) Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2; ">
      <seq>gaattagagttaagacatatcccttatctctctttaacttatacaaaagagtaaggctaaaagaattctcttttgatctttgctttttgctttgctttaatttagattaagcgcttatcattatatcaaaaaacattttaactttaacattttcttttcctaataatgaaatatttaagtttgatttgccatgcatggttgaattgtattctaacttctgtttaataatattaatttcatattacttgatagagttaagacatatatctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcctgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggttcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgcttcattgccacattatgattcatcggagtgggattatctaagaggagctttagctaccgtagatagagactatggtatactaaacaaggtgttccataatgttactgatactcatgtcttgcatcatatattctcatacatatcacattaccatgcaatggaggcgaccaacgcgattaagccattgctaggagattattaccaagttgatgataccccaattttaaaggcaatgtggagggatacaaaggagtgcatctatgtagagaaggatgaaggatctcaaggtagaggtgtttattggtataaaaacaagctttgaaagtagaataccaagtaattggttaaatgttttaacctaataagaagatgcaagtattttgaataattatgtgtgtttttgttgtattttattgttaaatgttggttttagttgtcactaatgtattgttaaaataaaatatctacttatatgtaacaatcaatttggtatgaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73998" stop="71537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73700" g_stop="73559" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73558" i_stop="73459" i_length="100">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73458" g_stop="71951" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="1643" r_length="1501" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U574777" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1650</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73700" e_stop="73559"/>
          <exon e_start="73458" e_stop="71951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAGAGTTAAGACATATATCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATA-TTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAATTAGAGTTAAGACATATCCCTTATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTAGATTAAGCGCTTATCATTATATCAAAAAACATTTTAAC....................................................................................................TTTAACATTTTCTTTTCCTAATAATG-AAA---TATTTAAGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTGATAGAGTTAAGAC-AT-ATATCTCATCTCTCT-TTAACTT-ATACAAAAGAATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCTGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGTTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGATGAAGGATCTCAAGGTAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATGTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGTCACTAATGTATTGTTAAAATAAAATATCTACTTATATGTAACAATCAATTTGGTATGAAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574775" ref_strand="+" ref_description="SGN-U574775 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|8886726|gb|AAF80560.1|AF192486_1 (e_value=8e-173) omega-6; (*ATH) AT3G12120.2 (e_value=3e-154) |; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=1e-156) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2; ">
      <seq>tttgaactttgagatttaggatatagcaaaagcaaaaatgggaggtggtggtaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttctggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgttgttatttgtattttggatggtgtgttatcataataataataatactgttacattaataaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76599" stop="78489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76813" g_stop="76825" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76913" g_stop="78197" g_length="1285"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="1298" r_length="1285" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U574775" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76813" e_stop="76825"/>
          <exon e_start="76913" e_stop="78197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGT</genome_strand>
        <mrna_strand>TTTGAACTTTGAG.......................................................................................ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATACTGTTACATTAATAAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588608" ref_strand="+" ref_description="SGN-U588608 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|51556906|gb|AAT72296.2| (e_value=5e-14) microsomal omega-6-desaturase [Nicotiana tabacum]; (*ATH) AT3G12120.2 (e_value=5e-12) |; (*SWP) sp|P48630|FD6E1_SOYBN (e_value=2e-13) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1; ">
      <seq>acatataattaaagtaacaatattattattattatgatagcacattttccaaaatacaaataacaacaacaactcatgcattggctaacacattcgtaagccagttgttattaatgaatattatgtgttgtaatttgtataccaaaaaataccctgatgttgagatgcttcatctttctccacatattgacactcattaaaatccctccatattgctttgtaaaatggagttccatcaaattggtagtattctcctagtagctgcatgatggccttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="78497" stop="77619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78197" g_stop="77916" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U588608" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78197" e_stop="77916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAATTAAAGTAACAATATTATTATTATTATGATAACACACCATCCAAAATACAAATAACAACAACAACTCATGCATTGGCTAACACATTCGTAAGCCAGTTGTTATTAATGAATATTATGTGTTGTAATTTGTATACCAGAAAATACCCTGATGTTGAGATGCTTCATCTTTCTCCACATATTGACACTCATTAAAATCCCTCCATATTGCTTTGTAAAATGGAGTTCCATCAAATTGGTAGTATTCTCCTAGTAACGGCTTGATGGCCTTGGTTG</genome_strand>
        <mrna_strand>AC-ATATAATTAAAGTAACAATATTATTATTATTATGATAGCACATTTTCCAAAATACAAATAACAACAACAACTCATGCATTGGCTAACACATTCGTAAGCCAGTTGTTATTAATGAATATTATGTGTTGTAATTTGTATACCAAAAAATACCCTGATGTTGAGATGCTTCATCTTTCTCCACATATTGACACTCATTAAAATCCCTCCATATTGCTTTGTAAAATGGAGTTCCATCAAATTGGTAGTATTCTCCTAGTAGCTGCATGATGGCCTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574779" ref_strand="+" ref_description="SGN-U574779 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>acctattattaaagtaacaatattattattattatgataaccccttatgaaaaatacaaataacaacaacaactcatgcattggctaacacattcgtaagccagttgttattaatgccttttatgtgttgtaatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="78493" stop="77759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78197" g_stop="78059" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U574779" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>139</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78197" e_stop="78059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAATTAAAGTAACAATATTATTATTATTATGATAACACACCATCCAAAATACAAATAACAACAACAACTCATGCATTGGCTAACACATTCGTAAGCCAGTTGTTATTAATGAATATTATGTGTTGTAATTTGT</genome_strand>
        <mrna_strand>ACC-TATTATTAAAGTAACAATATTATTATTATTATGATAACCCCTTATGAAAAATACAAATAACAACAACAACTCATGCATTGGCTAACACATTCGTAAGCCAGTTGTTATTAATGCCTTTTATGTGTTGTAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568593" ref_strand="+" ref_description="SGN-U568593 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|115467830|ref|NP_001057514.1| (e_value=8e-102) Os06g0320700; (*ATH) AT5G13030.1 (e_value=5e-103) | Symbol: None | expressed protein, contains Pfam profile PF02696: Uncharacterized ACR, YdiU/UPF0061 family | chr5:4133219-4136921 FORWARD | Aliases: T19L5.1, AT5G13040; (*SWP) sp|Q5NYD9|Y3800_AZOSE (e_value=5e-72) UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000; ">
      <seq>attcaacccataaattatcaaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttccaccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcatggtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctctggggcatcaccattggtgggagcgataccttatgcccaaaattatggaggacatcagtttggcatgtgggccgggcagttaggggatggtagggcaataactcttggagagatattgaattcaaagtcacaaaggtgggagctgcagcttaagggtgctggaaagaccccatatagtcgttttgctgatggtcttgcagtgcttcgtagtagcatccgagaattcctttgtagtgaagcaatgcacggtcttggaatcccaacaacacgagcactttgtctagtgacgacgggaaaagatgttatgagggatatgttttatgatggaaatcccaaagatgaacctggtgcaattgtctgcagagttgctcaatcgtttctgcgttttggttcttatcaactgcatggctctagaggaaaaaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88750" stop="92065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89050" g_stop="89398" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="459" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="516" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91354" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="816" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91355" i_stop="91662" i_length="308">
            <donor d_prob="0.156" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91663" g_stop="91765" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="920" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U568593" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89050" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91354"/>
          <exon e_start="91663" e_stop="91765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGAGTATGTTCCTCAGCGACAATTTTTTATGCTGTTTGATAAGTTGCATAAATCAGCAAGAAATCATCTTGCTAGCCTGAATTGTATTTCGTGTTCTCTTCATTATGTGTAGCATCTTTGCCTTCAAATCTTCTATGCCTTTGGAAGAATGAAACTGTGAGGAAGTTTGATGAGAAGCAGACTTCTTTATGGGAGGTTTGGAGTCTGCATAGTAATTCATGTCTTAGAATTATACTCCGCATAATTGTTACTTTGTACATTCTAGTGCATTTTCGTTTCCACTATTGATTATTGTCTTCTGTCTCATGCAGTGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTGCATGCCTCTAGAGG-AAAAAAGGAT</genome_strand>
        <mrna_strand>ATTCAACCCATAAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCACCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGA....................................................................................................................................................................................................................................................................................................................TGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTGCATGGCTCTAGAGGAAAAAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571090" ref_strand="+" ref_description="SGN-U571090 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|115467830|ref|NP_001057514.1| (e_value=3e-139) Os06g0320700; (*ATH) AT5G13030.1 (e_value=4e-136) | Symbol: None | expressed protein, contains Pfam profile PF02696: Uncharacterized ACR, YdiU/UPF0061 family | chr5:4133219-4136921 FORWARD | Aliases: T19L5.1, AT5G13040; (*SWP) sp|Q5NYD9|Y3800_AZOSE (e_value=1e-58) UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000; ">
      <seq>cccccatttggagaatatgactaggagtgaaagcatatcagctaacacagacgtggatttaacttcaaacaagtatgcagcttgggcagtggaagttgctgagaggactgcgtccatgattgccaggtggcaggatgttggtttcacacatggagtcatgaacactgataatatgagcgtgttaggactcactattgactatggtccctttggctttttagattcttttgatcccagttacacaccaaataccactgatcttcctggcagaagatattgttttgcaaatcagccagatgtaggtttatggaatattgcgcagtttacctctgctctatctactgccgagttgcttagtgataaagaggcagattatgctatggaaagatatggtaacaaattcatggatgattatcaagatatcatgaccaggaaacttggtctgacaaagtacaataaaaagttgattggtgaactactcaagaatatggtctccgataaagttgattacacaaatttctttcgatctctatcaaacatcaaagctgatcctgcaattccagaggaccaattattgattcctctcaaagatgttctcttagatattggtatggaacgcagggaagcctggactaactggataaagtcatatatacaagagctctccacaactggtgtattagatgaggagaggaaagtttcaatgaattttgtaaatccaaagtacatcctcagaaactatctatgccagaatgccattgatgcagcagaacaaggcgattttgaggaggttcggcagttattgaaggttatgcaatgtccatttgatgaacagcctggtatggagaaatatgcacgcttgcctccagcttgggctcatcgtccgggtgtatgcatgctttcttgttcctcataaggtttccgggtgtatgcttatgctttcttgttcctcataatatctccactatgtaataccagagtttcacttgtatatatataactagtctcccggcacgtgcgttgcacgtgtattccaaataaaaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="91513" stop="95045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91813" g_stop="91892" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91893" i_stop="92312" i_length="420">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92313" g_stop="92619" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="387" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92620" i_stop="92728" i_length="109">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92729" g_stop="93002" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="661" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93003" i_stop="94357" i_length="1355">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94358" g_stop="94745" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="1049" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-U571090" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1049</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91813" e_stop="91892"/>
          <exon e_start="92313" e_stop="92619"/>
          <exon e_start="92729" e_stop="93002"/>
          <exon e_start="94358" e_stop="94745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAGGTAAATATAAAGGCTATCTTGAAGATAATATAGGGATTCCCTCTTTCTCAAAAAAAAATAATATAGTGATTCCCTTGCCTATGAAAAAACTAATCTCCTTATAAAGACGGCACGTAGAGTGCGCAAGGAGAGTAATGGTAGTTATTCATTGAGGACTAATCAGTGTTTCAAACTTCTCCATTTTTGGTGACACTCTTTATCATATACAAATACTCCCTCCGTTTCAATACATTTGTCTTACTTTCCTTTTTATTCCGTTTAAGAAAGAATGGCTATTTCTTTTTTTGACGCAACTCTAATTTTTTTACTTTCCACATGTCATGGACCACAAGATTTAGAAAGAATATAAGTGCAACAGTCCATGTATACTTTTGACAATTTGCTTCCCTACATCCTATTGATTTGGGTGCATCATTTCAGCTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAGGTATGTGACAATGAATTTCCTTATTCAAATAATACAATGCCGCCGCCTCAATCCCAGGGGTCGGCTATATTAATCCTCACTGTCTATGTCTGGTCCATTTATGCTCATTTCAGTCCAATATTATTCAATTTTCCCAAATAGAATGAAGCATATAATGTGTTTAGAATTAGTTTAGCTACTTGAGCTCAACATTGCAGTGAGTAGGGTAATATAAGGTCGGGTAACATAAGGTCCTTTGAAATCGGACTTTGTCCTGGAACCACCCGTATTTGAATAGTTATTCACTTCAATAATAAGTTGTTATGGTTTTGTTCTTTAAACTGTTGTCAAATGTTCTTTTAGGATAGCTGGTTGCTCACCTTGTTTGTTCCTTAGATACCAGTAATGGTAGGTGGTAATGGATAGCAGTTTCCATCCATGGGAAGATGTTCAATTTCATTCCTCCTCTGCCTTGTTCTTCAAGGTTTCCATCTTTCCAGTCTCTTCTACCCTGGGCCCAAAAAAGCAAGAAGAAAGTCATAAAGGAAATAACAGATAGTAGACGTAAGCAATGGGTGAGAAGTAGTTGTGACAACGTTTTTGTATGGCATTGAGTGTGACTCTTATATTCTCATCAATTGAAATGGCTTGTCATGTTAGCTTCCTGCTTCTTCCTCTTTTATGTCTAACACCTTGTGCTCAGATTGTGCTGTGGAAGAGACATCCTTCTACAAGAGGTGTCAGATGACTTGTATGTAGGTAATAGTGTGGTCACCCATTAGGTGGGAGAGGGAGGAAGCTTGCCCCATATCCTTTTTCTCCTTATTAGTAGTAATATTTAGTAATCACATAGTTTCTTATTCTTCATGTGTGTCTACTATTTGTTGCTTCGTTTTGCTTTATATCTTGATATTTGTTGTCATTTTTTTCTGCTTGCAACACTTCCATGAATAACTTCCCTTTTAAGCCGAGGATCTATCGGAAACCTCTCCACCCCACAGAGGTAGGGTAAGGTCTGCATACATCTCACTCTCTCCAGACCCCACTTGTGGGATTACATTGAGTATGTTGTGTTGTATGTAAGTAGTGTTTTTTCTTGAAAAAGAAAGTATCGATATATAAGGCTGATACAACTTGAAAAGCAATGTCAGAGTAAACAACAATTTGAAGCAAAGCCTTGTAACTTACGCAACTTAGACGGTAACTCATTTGCAAATTGAGTTGTTGAATTGTGGTAATAGACAGACAATGCTTGCGTAAAATCCTGCATACACCATTGTTTTATGCGGTTGTTTTTGTGGACTCTTTTCTGGAAATTATCAAGTTCCATTCTTGTATGTGAGGTACTCATGGTGTCACTTTTCTACCTCTTGCAGCTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAAT</genome_strand>
        <mrna_strand>CCCCCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG.............................................................................................................ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U600952" ref_strand="+" ref_description="SGN-U600952 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|75326590|sp|Q76CU2|PDR1_TOBAC (e_value=4e-50) Pleiotropic; (*ATH) AT1G15520.1 (e_value=8e-29)  Symbol: PDR12 | ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. | chr1:5331988-5338170 REVERSE | Aliases: T16N11.3, T16N11_3, PDR12, PLEIO... ; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=3e-51) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1; ">
      <seq>ttgcagttgtaagatcccgagggtttttcccaaatgcatactggtactggataggtgtcagcgcacttattggtttcataatcgtctttaacatcttctacagacttgcactcgtttttctcaacccatttggtaagccgcaaggtatgatatcagaagacagtgatgatgccaaaacacaaacactgagaaagaagtatccactagtgagggccagaataagaaaaagggaatggttcttcaatttgaaccgcattccatcaccttcaatgaagttacgtactctgttgacatgcctcaggaaatgaaaaatcaaggtgccactgaagatagattggtacttctgaatggtgtatgcggagctttcaggcccggtgttttgacagcattgatgggagttagtggcgctggaaaaacaacgttaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="99121" stop="97936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98821" g_stop="98696" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98695" i_stop="98620" i_length="76">
            <donor d_prob="0.967" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98619" g_stop="98444" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="301" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98443" i_stop="98365" i_length="79">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98364" g_stop="98236" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="430" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U600952" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98821" e_stop="98696"/>
          <exon e_start="98619" e_stop="98444"/>
          <exon e_start="98364" e_stop="98236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATTGTAAGATCCCGAGGTTTTTTCCCAAATGCATACTGGTACTGGATTGGTGTCGGTGCACTTATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTTTCTTAACCGTGAGTATCTTTAGAGTTTTTCCATTTATTTTCCCTTAAAGGCGTATACATTGAATGTTTAGTTGAATATCTACAGCACTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAACAACAAACACTGGGAAAGAAGTACCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCCATCACCTTCAATGAAGTTACATACTCTGTTGACATGCCTCAGGTAACTAGCTGGGAATTGTTGTAGGATATAAAAATTATGATACTTTCAGTGATACTGAACTTTCCAATGATACTTTCAGGAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</genome_strand>
        <mrna_strand>TTGCAGTTGTAAGATCCCGAGGGTTTTTCCCAAATGCATACTGGTACTGGATAGGTGTCAGCGCACTTATTGGTTTCATAATCGTCTTTAACATCTTCTACAGACTTGCACTCGTTTTTCTCAACC............................................................................CATTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAAC-ACAAACACTGAGAAAGAAGTATCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCAATTTGAACCGCATTCCATCACCTTCAATGAAGTTACGTACTCTGTTGACATGCCTCAG...............................................................................GAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564807" ref_strand="+" ref_description="SGN-U564807 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|75326590|sp|Q76CU2|PDR1_TOBAC (e_value=2e-79) Pleiotropic; (*ATH) AT1G15520.1 (e_value=4e-71)  Symbol: PDR12 | ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. | chr1:5331988-5338170 REVERSE | Aliases: T16N11.3, T16N11_3, PDR12, PLEIO... ; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=1e-80) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1; ">
      <seq>cgttgcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="105288" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104994" g_stop="104922" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104921" i_stop="104852" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104851" g_stop="104597" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="326" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104596" i_stop="104504" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104503" g_stop="104093" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="737" r_length="411" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U564807" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104994" e_stop="104922"/>
          <exon e_start="104851" e_stop="104597"/>
          <exon e_start="104503" e_stop="104093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCAATATCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCTGTAAGTTGTTGAAACAATTCCATTTTGTTTTACATGAAAATCAATTTAGAGCTTGAAAATGATGACATGTTTTCATTGATTTTAAATAACCAGAGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</genome_strand>
        <mrna_strand>CGTTG--CGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT.............................................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U589762" ref_strand="-" ref_description="SGN-U589762 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>catttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccaagggaacaagtatatatatgttctgtttgttttgtatttatcgactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="104586" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104286" g_stop="104108" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="184" polyA_stop="197"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U589762" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589762" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104286" e_stop="104108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAA</genome_strand>
        <mrna_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCAAGGGAACAAGTATATATATGTTCTGTTTGTTTTGTATTTATCGACTATGCAGTGAAATGATTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574714" ref_strand="+" ref_description="SGN-U574714 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|20522008|dbj|BAB92011.1| (e_value=0) pleiotropic drug resistance like protein [Nicotiana tabacum]; (*ATH) AT1G15520.1 (e_value=0)  Symbol: PDR12 | ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. | chr1:5331988-5338170 REVERSE | Aliases: T16N11.3, T16N11_3, PDR12, PLEIO... ; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1; ">
      <seq>gtttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcaaagaattgacagagttgggatagatttgcctgaaatagaagtaagatatgagcatttaactattgaggcagatgcatatgtaggaagtagagctttgcctacatttatcaactttatctctaatttttttgaggatatattgaactctgtccatatcctaccgagtcgaaagaggaaactaactattcttaatgatgtgagtggtatcattaagcctcgcagattgactttgcttttaggacctccaagttccgggaaaactacattattattagctttggccggaaagctcgactctgcccttaaggttactggaaaagtgacctataatggacatgaaatgaatgagtttgtgccgcaaagaacagctgcttatattagccagtatgatttacatattggagaaatgactgtgagagaaaccttggaattctccgccagatgccagggagttggatcgagttatgagatgttggttgaactgtcaagaagagagaaagcagctaaaatcaagccagatcctgatattgatattttcatgaaggcattagcaacagagggacaagaagccgtttttgttacagattatgttctgaagcttttggggctggatatttgtgcagatactatggtgggagatgaaatgattaggggaatttcaggaggacaaaagaagcgtgtgacaaccggtgaaatgctcgttggaccgtccaaggcacttttcatggatgaaatctcaactggattggatagttctactacttactcaatagtgaactcactaagacaatctgtgcaaatcttgcacggaactgctgtgatatctctcttgcagccagcacccgagacgtacaacttgttcgacgacattattctgttatcagatgagaaaattgtctatcagggacctcgagaggatgtccttggcttctttgagtccatggggttcaaatgtccagacagaaaaggcgtggccgacttcttgcaagaagtgacttcaaagaaagatcaacagcaatattgggtgaggagggatgaaacttaccggtttatcacttcaaaagaatttgctgaggcacatcaatcgttccatgttgggaggaaactcgcggataagcttgcagcttcatatgacaagagcaaaagccatcctgctgctttgtcaactcaaaagtatggtatagggaagaaacaactcttaaaggtctgcactgaacgagaactcttactaatgaagaggaactcatttgtttacatcttcaagttcattcagcttacaattgtggcactcatatcaatgactctctttttccgtactaagatgccgcgtgatacaactgaagatggagtaaaatatgttggtgccctctttttggttgtcactcagattatgtttaacggaatggctgagatcgccctgacaatttacaaacttcctgtcttctacaagcaaagggaccttctcttttacccttcatgggcttatgcaatgcccacatggatactcaaaatgcctataacatttgctgaagttggactttgggtgttcctcacttactatgtcataggatttgatccgagtgctgcaagattattcaaacagtttttgctactcatattactaaaccagatggcgtcagcattgtttcgcttcattggggcagctggaaggaccatgggagttgctaatacatttggaacatttgttctgcttttacagtttgcattgggtggattcgttctttcacgagttgatgtgaagaaatggtggttatggggttactggtcatcaccgatgatgtatgctatgaattcaattcttgtgaatgaatttgatggaaaaaagtggaaacaaattgcaccaaatggaactgattcacttggagttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="110233" stop="105762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109933" g_stop="109548" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109026" g_stop="108906" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="507" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108905" i_stop="108818" i_length="88">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108817" g_stop="108644" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="681" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108643" i_stop="108502" i_length="142">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108501" g_stop="108342" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="841" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108341" i_stop="108001" i_length="341">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108000" g_stop="107924" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="918" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107923" i_stop="107863" i_length="61">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107862" g_stop="107809" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="972" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107808" i_stop="107713" i_length="96">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107712" g_stop="107320" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1365" r_length="393" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107319" i_stop="107238" i_length="82">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107237" g_stop="106956" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1366" r_stop="1647" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="106955" i_stop="106860" i_length="96">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="106859" g_stop="106543" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1648" r_stop="1964" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="106542" i_stop="106448" i_length="95">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="106447" g_stop="106287" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1965" r_stop="2125" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="106286" i_stop="106203" i_length="84">
            <donor d_prob="0.358" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="106202" g_stop="106062" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="2126" r_stop="2266" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U574714" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>2266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109933" e_stop="109548"/>
          <exon e_start="109026" e_stop="108906"/>
          <exon e_start="108817" e_stop="108644"/>
          <exon e_start="108501" e_stop="108342"/>
          <exon e_start="108000" e_stop="107924"/>
          <exon e_start="107862" e_stop="107809"/>
          <exon e_start="107712" e_stop="107320"/>
          <exon e_start="107237" e_stop="106956"/>
          <exon e_start="106859" e_stop="106543"/>
          <exon e_start="106447" e_stop="106287"/>
          <exon e_start="106202" e_stop="106062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAGGTAAAAAGAAAATCTTGATTTCGAATCTTGAACAAAAAGGATGTTTGTAACTAACTTTTTTTTTTAAAAATTTTTTTGGGATTCATAGGATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAGGTATCACCATTAGTTCTATGTATCCAAGACTGACAGTTCAAGGATTAGCTAGCTGTCATTTTTGTCGTTCCGACAATTAATATATATTCTTCTTATTATAGACTGTCAATGCATAAAACTCATTTGTTTGTGTGGAAAACAGGTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATGGTTAGAATTTGTCTCCTTTTTCCTTAATCACTAAACCAGTAATGAGCTTTAACGAAAATAACTTAATTGCCACTAAAAATGTGCATGGTTTGTAAATGTCCCTAAAGCCTATAGCGGTATTGGATCCAATAACAATGAATCAATTAATGCTCGTAAAGCCTTTAGCACTTTTTATTATATGCATATTTAATTTATTGCCACTAAAATTAAAGTTGTTTTTTTATTGTAGTGAATCTTGATCATACTTCAAACTTCTTGTTCTTTAAAAAAAGCATTTTGTGTTGAAATTTAACTAACGTGGATGATATATCGATTGATCTTTCTCGGAATTATTGTTGCAGAGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAGGTAAGCAACTAGAATATTTCCTTTCTCGAAAAGAAATGCTTATAGTTATTTTGGGATGTAGGCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAGGTAACAGAAATATGTTTCACTAATTTCTCAAAATTTCCGACGATCAGAAGGCTGAGGAAAATTTGATAACTAAGTGATTTGTGTATTCCACTGCAGCTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAAGTATGTCTTATAATAAACAAATAAGAATGACAATCATTGATCTATTTTCCCTTCTGATGGTGGAAATTTAAATTCGTTGCAGGTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAGGTGACAACTTGTCAATGAAAATATTAAATTTCAAGTCTCCGGCTCATCATATTTGTTCGCAAGTACTAATGCCTCATGGTTTTGATCTGTTCACAGCTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAGGTAAGAGAAGAAATAGATGATGCAGTATAAAGATCAGGTTACCTTCAACAGCTTCCTTTTTCCCGTGATTACTTAACATCAGTCTATTATTGCAGATTTTTCAAACAGTTTTTGCTACTCATATCACTAAACCAGATGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGATTCGTTCTTTCACGAGGTATATTTGGTGATTTATGTGTTAGTAGAAGCTTTAATCTTGCAAAAACCAACTACTGCTAACAGACTACTGCTGATGTTGTAGTTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</genome_strand>
        <mrna_strand>GTTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG........................................................................................GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG..............................................................................................................................................GTTACTGGAAAAGTGACCTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCTGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG.....................................................................................................................................................................................................................................................................................................................................................AGATGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG.............................................................GCATTAGCAACAGAGGGACAAGAAGCCGTTTTTGTTACAGATTATGTTCTGAAG................................................................................................CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGAATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATAGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTTGAGTCCATGGGGTTCAAATGTCCAGACAGAAAAGGCGTGGCCGACTTCTTGCAAGAA..................................................................................GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG................................................................................................CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAACTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAATGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGTGCTGCAAG...............................................................................................ATTATTCAAACAGTTTTTGCTACTCATATTACTAAACCAGATGGCGTCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTACAGTTTGCATTGGGTGGATTCGTTCTTTCACGAG....................................................................................TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571430" ref_strand="+" ref_description="SGN-U571430 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcattggtaggggttggatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="115499" stop="114243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115199" g_stop="114543" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-U571430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115199" e_stop="114543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGT</genome_strand>
        <mrna_strand>CCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTC-ATTGGTAGGGGTTGGATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17533" PGL_stop="14682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17533" e_stop="17475"/>
            <exon e_start="17344" e_stop="17015"/>
            <exon e_start="16915" e_stop="16847"/>
            <exon e_start="16765" e_stop="16679"/>
            <exon e_start="16586" e_stop="16499"/>
            <exon e_start="16315" e_stop="16227"/>
            <exon e_start="16139" e_stop="16035"/>
            <exon e_start="15961" e_stop="15918"/>
            <exon e_start="15812" e_stop="15743"/>
            <exon e_start="15649" e_stop="15546"/>
            <exon e_start="15120" e_stop="14682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="17533" e_stop="17475" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17344" e_stop="17015" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16915" e_stop="16847" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16765" e_stop="16679" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16586" e_stop="16499" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.826" acc_prob="0.880">
            <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16315" e_stop="16227" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16139" e_stop="16035" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.779" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15961" e_stop="15918" e_length="44"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15812" e_stop="15743" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15649" e_stop="15546" e_length="104"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425"/>
          </intron>
          <exon e_serial="11" e_score="0.998">
            <gDNA_exon_boundary e_start="15120" e_stop="14682" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17533" stop="17475"/>
              <exon start="17344" stop="17015"/>
              <exon start="16915" stop="16847"/>
              <exon start="16765" stop="16679"/>
              <exon start="16586" stop="16499"/>
              <exon start="16315" stop="16227"/>
              <exon start="16139" stop="16035"/>
              <exon start="15961" stop="15918"/>
              <exon start="15812" stop="15743"/>
              <exon start="15649" stop="15546"/>
              <exon start="15120" stop="14682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT : GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG : AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG : TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG : GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG : GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG : GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG : GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA : ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG : ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG : GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</gDNA_template>
            <first_frame> R  R  K  S  V  S  L  W  *  K  A  S  K  Q  I  F  C  R  C  L :   V  M  L  M  L  Y  A  V  D  H  L  A  K  E  S  V  G  S  I  V  L  G  I  K  K  I  R  C  R  I  P  K  I  N  N  L  M  S  T  W  T  L  W  I  S  *  N  P  G  L  Y  *  W  R  M  W  W  T  L  S  N  S  P  M  V  S  L  G  D  M  H  *  A  D  L  *  G  *  T  T  K  H  G  W  E  *  W  Q  L  V  R  M  V  F  H  N  F  V  C  V  F  S  C  L  E  L  F  H  Q  R :   S  C  H  N  I  H  C  P  H  I  K  L  L  *  G  V  L  F  P  *  N  L  S :   Q  T  Q  L  R  M  I  Q  S  G  I  S  S  *  R  K  N  S  F  L  V  M  H  F  L  I  S  L  W :   W  R  T  M  S  Q  E  M  K  C  L  T  L  M  S  L  N  L  I  S  S  I  L  *  E  W  G  G  M  :  G  C  W  E  A  Y  Y  M  I  I  V  L  F  S  *  T  K  M  I  I  S  V  Y  V  K  F  Q  S  G  R :   V  Q  T  S  G  T  C  P  E  F  V  F  G  Q  I  I  K  L  N  G  T  Q  T  W  R  E  *  S  Y  L  L  G  S  L  W :   S  L  T  M  R  *  A  S  L  V  V  V  P  Q   : N  H  L  V  V  C  G  G  M  K  L  S  Q  Q  L  *  R  E  L  N  P  I  I  R :   P  *  Y  I  H  Y  K  I  E  C  S  Q  F  V  K  M  Q  G  S  K  V  F  L  T  T  T  S  *  *  V  Q  *  K  K   : G  T  C  K  *  V  M  Q  L  Q  F  Q  L  P  E  H  W  A  I  L  W  P  C  Q  *  R  D  Y  L  E  K  H  H  C  S  P  C  Q  K  I  S  L  L  M  R  I  R  I  V  M  K  C  H  N  N  L  N  I  N  *  L  R  L  P  N  Y  L  S  P  S  V  W  G  M  I  I  F  R  I  L  V  L  L  I  N  L  P  S  D  I  V  S  Q  Y  N  H  A  N  V  E  A  G  E  G  V  G  L  C  N  S  K  V  N  M  C  H  V  L  F  *  F  P  E  N  V  F  *  A  F  N  S  M  *  H  F  K  L  *  T  V  R  K  H  L  D  T   </first_frame>
            <second_frame>  E  E  N  Q  *  V  C  G  E  R  L  Q  S  K  S  F  A  V  A   : W  *  C  *  C  C  M  R  W  T  T  L  P  R  N  Q  W  V  Q  S  F  *  E  *  R  K  S  D  A  G  S  Q  K  *  T  T  *  C  L  H  G  H  C  G  F  L  E  T  Q  V  C  I  N  G  E  C  G  G  P  C  Q  I  L  Q  W  F  P  W  A  I  C  I  E  Q  T  C  R  D  E  L  P  S  T  D  G  N  D  G  S  W  C  V  W  S  S  T  I  S  Y  A  C  F  H  V  W  S  S  F  I  R   : E  V  A  T  I  S  I  A  H  T  *  S  Y  C  E  G  C  Y  S  R  R  I  *   : V  K  H  S  C  V  *  F  S  Q  G  S  R  V  K  E  R  T  L  S  W  *  C  T  F  *  S  P  F   : G  G  E  Q  *  A  K  R  *  N  A  L  H  *  *  A  *  I  *  F  P  A  F  Y  K  N  G  E  G  W :   V  V  G  K  R  T  I  *  S  S  S  S  S  V  E  R  R  *  S  S  A  C  M  S  N  S  K  A  E   : G  C  K  L  Q  G  L  A  R  S  S  C  S  A  R  *  *  S  *  M  G  P  R  R  G  E  S  K  A  T  F  W  E  A  F   : G  P  *  L  C  D  E  L  R  W  W  *  F  L  K  :  T  I  W  S  F  V  V  G  *  N  C  P  N  S  C  D  E  S  *  T  P  *  S   : D  H  S  T  S  T  T  R  *  S  A  H  N  S  *  K  C  K  A  P  R  F  S  *  L  L  Q  V  D  R  S  N  K  R  K  :  V  H  A  S  R  *  C  S  C  S  S  S  C  P  S  I  G  L  F  F  G  H  V  N  K  G  I  I  W  R  N  T  I  V  H  L  A  K  K  F  P  F  S  *  G  S  E  L  *  *  S  V  T  I  I  *  T  L  T  N  *  D  Y  Q  T  I  F  H  P  L  Y  G  G  *  L  F  L  G  S  *  F  Y  *  L  I  C  L  Q  T  L  F  H  N  T  I  M  P  M  L  K  L  V  K  A  W  V  Y  V  I  A  R  *  T  C  V  M  F  Y  S  S  S  Q  K  M  Y  F  E  H  S  I  P  C  N  I  S  S  C  K  L  *  E  N  I  *  T  H  </second_frame>
            <third_frame>   K  K  I  S  E  F  V  V  K  G  F  K  A  N  L  L  P  L  P  :  G  D  V  D  V  V  C  G  G  P  P  C  Q  G  I  S  G  F  N  R  F  R  N  K  E  N  P  M  Q  D  P  K  N  K  Q  L  D  V  Y  M  D  I  V  D  F  L  K  P  R  F  V  L  M  E  N  V  V  D  L  V  K  F  S  N  G  F  L  G  R  Y  A  L  S  R  L  V  G  M  N  Y  Q  A  R  M  G  M  M  A  A  G  A  Y  G  L  P  Q  F  R  M  R  V  F  M  F  G  A  L  S  S  E  :  K  L  P  Q  Y  P  L  P  T  H  K  V  I  V  R  G  V  I  P  V  E  F  E  :  S  N  T  V  A  Y  D  S  V  R  D  L  E  L  K  K  E  L  F  L  G  D  A  L  S  D  L  P  L  :  V  E  N  N  E  P  R  D  E  M  P  Y  T  D  E  P  K  S  D  F  Q  H  F  I  R  M  G  R  D   : G  L  L  G  S  V  L  Y  D  H  R  P  L  Q  L  N  E  D  D  H  Q  R  V  C  Q  I  P  K  R  K  :  G  A  N  F  R  D  L  P  G  V  R  V  R  P  D  N  K  V  E  W  D  P  D  V  E  R  V  K  L  P  S  G  K  P  L  :  V  P  D  Y  A  M  S  F  V  G  G  S  S  S  K :   P  F  G  R  L  W  W  D  E  T  V  P  T  V  V  T  R  A  E  P  H  N  Q  :  T  I  V  H  P  L  Q  D  R  V  L  T  I  R  E  N  A  R  L  Q  G  F  P  D  Y  Y  K  L  I  G  P  I  K  E  R :   Y  M  Q  V  G  N  A  V  A  V  P  V  A  R  A  L  G  Y  S  L  A  M  S  I  K  G  L  S  G  E  T  P  L  F  T  L  P  K  N  F  P  S  H  E  D  Q  N  C  N  E  V  S  Q  *  F  K  H  *  L  I  E  I  T  K  L  S  F  T  L  C  M  G  D  D  Y  F  *  D  L  S  F  I  D  *  F  A  F  R  H  C  F  T  I  Q  S  C  Q  C  *  S  W  *  R  R  G  F  M  *  *  Q  G  E  H  V  S  C  S  I  L  V  P  R  K  C  I  L  S  I  Q  F  H  V  T  F  Q  V  V  N  C  E  K  T  F  R  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17531" stop="17475"/>
                    <exon start="17344" stop="17015"/>
                    <exon start="16915" stop="16847"/>
                    <exon start="16765" stop="16679"/>
                    <exon start="16586" stop="16499"/>
                    <exon start="16315" stop="16227"/>
                    <exon start="16139" stop="16035"/>
                    <exon start="15961" stop="15918"/>
                    <exon start="15812" stop="15743"/>
                    <exon start="15649" stop="15546"/>
                    <exon start="15120" stop="14958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKISEFVVKGFKANLLPLPGDVDVVCGGPPCQGISGFNRFRNKENPMQDPKNKQLDVYMDIVDFLKPRFVLMENVVDLVKFSNGFLGRYALSRLVGMNYQARMGMMAAGAYGLPQFRMRVFMFGALSSEKLPQYPLPTHKVIVRGVIPVEFESNTVAYDSVRDLELKKELFLGDALSDLPLVENNEPRDEMPYTDEPKSDFQHFIRMGRDGLLGSVLYDHRPLQLNEDDHQRVCQIPKRKGANFRDLPGVRVRPDNKVEWDPDVERVKLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDETVPTVVTRAEPHNQTIVHPLQDRVLTIRENARLQGFPDYYKLIGPIKERYMQVGNAVAVPVARALGYSLAMSIKGLSGETPLFTLPKNFPSHEDQNCNEVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21465" PGL_stop="18590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21465" e_stop="20809"/>
            <exon e_start="20537" e_stop="20500"/>
            <exon e_start="20406" e_stop="20307"/>
            <exon e_start="19050" e_stop="18943"/>
            <exon e_start="18859" e_stop="18740"/>
            <exon e_start="18659" e_stop="18590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.487" e_score="0.981"/>
          <exon-intron don_prob="0.706" acc_prob="0.820" e_score="0.975"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21465" e_stop="20809" e_length="657"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20537" e_stop="20500" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20406" e_stop="20307" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20306" i_stop="19051" i_length="1256"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="19050" e_stop="18943" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.793" acc_prob="0.487">
            <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="18859" e_stop="18740" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.706" acc_prob="0.820">
            <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="18659" e_stop="18590" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21465" stop="20809"/>
              <exon start="20537" stop="20500"/>
              <exon start="20406" stop="20307"/>
              <exon start="19050" stop="18943"/>
              <exon start="18859" stop="18740"/>
              <exon start="18659" stop="18590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCTCTCTTATATTCCCTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT : AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG : TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG : GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT : GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT : GCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTC</gDNA_template>
            <first_frame> A  L  S  Y  I  P  S  S  S  R  H  C  T  H  C  T  F  A  A  A  A  A  T  Y  Y  F  I  F  S  D  I  P  M  P  S  K  R  K  S  S  P  A  T  K  P  E  S  S  S  G  S  R  K  S  K  R  L  V  V  E  R  P  D  P  V  V  A  Q  P  S  D  S  D  F  E  P  E  P  V  L  S  S  K  K  K  S  T  R  R  T  T  A  E  S  S  V  V  A  C  Q  S  E  S  N  N  K  K  L  K  K  P  T  V  E  K  A  E  S  G  V  A  S  P  A  D  R  D  F  V  S  E  S  D  S  E  T  P  S  K  K  S  T  R  R  A  A  V  K  V  E  P  L  V  D  S  V  A  G  S  D  F  V  E  E  E  E  V  D  G  M  E  L  G  S  L  K  K  S  L  S  I  S  P  S  K  R  K  P  K  R  A  E  K  V  K  D  E  E  C  V  L  A  G  D  P  V  P  D  A  E  A  R  L  K  W  P  H  R  Y  :  N  K  G  K  E  N  G  T  K  S  L  N  G :   Q  D  D  P  D  Q  L  I  Q  A  K  C  H  F  S  R  A  D  V  D  G  Q  I  Y  Y  L  E  D  D  A  H  V  K  :  A  A  D  G  E  D  D  Y  I  C  K  I  V  E  F  F  E  A  V  D  G  V  Q  Y  F  T  A  Q  W  F  Y  R  A  K  D  T  :  V  I  K  S  H  D  Q  F  I  D  K  K  R  V  F  L  S  E  I  K  D  D  N  P  L  D  C  L  V  T  K  L  K  I  V  P  V  P  S  N  :  A  T  S  Q  F  K  E  N  V  K  S  N  C  D  F  Y  Y  D  M  K  Y  L  L  </first_frame>
            <second_frame>  L  S  L  I  F  P  H  P  P  A  T  V  H  T  A  R  S  P  P  P  L  R  P  T  T  S  S  F  Q  I  S  Q  C  Q  A  N  G  N  L  L  R  L  Q  S  Q  S  L  H  P  A  V  G  S  R  R  D  L  *  L  K  D  Q  I  Q  *  *  L  N  H  L  I  P  I  L  N  R  N  L  F  Y  H  Q  R  R  N  P  R  D  E  Q  Q  L  K  V  Q  W  *  L  V  N  R  K  A  I  T  R  S  *  R  S  Q  L  L  K  R  Q  N  L  V  *  L  H  Q  L  I  E  I  S  Y  L  S  L  I  R  R  R  R  A  R  N  P  R  G  E  L  Q  *  R  W  N  L  W  W  I  L  *  L  G  V  I  L  W  K  R  K  K  *  M  E  W  S  *  G  V  *  R  R  A  C  R  F  H  L  P  K  G  S  L  R  G  L  R  K  L  K  M  K  S  V  Y  L  P  V  T  L  F  R  M  Q  K  L  D  *  S  G  L  I  A  I :   I  K  G  K  K  M  V  P  R  A  *  M   : V  K  M  I  R  T  S  *  F  K  L  S  A  I  L  V  E  Q  M  L  M  V  R  Y  I  I  S  R  M  M  H  M  *  R :   L  L  M  V  R  T  I  T  F  A  R  L  L  N  S  L  K  Q  L  T  E  C  S  I  L  Q  L  S  G  F  T  E  L  R  I  L :   L  L  K  A  M  I  S  S  L  T  K  N  V  Y  S  F  L  K  S  R  M  T  I  L  L  I  A  L  *  P  N  *  R  L  F  L  C  P  Q  M :   Q  L  H  S  S  R  K  M  *  N  Q  I  V  I  S  T  M  T  *  S  T  C  F </second_frame>
            <third_frame>   S  L  L  Y  S  L  I  L  P  P  L  Y  T  L  H  V  R  R  R  R  C  D  L  L  L  H  L  F  R  Y  P  N  A  K  Q  T  E  I  F  S  G  Y  K  A  R  V  F  I  R  Q  *  E  V  E  E  T  C  S  *  K  T  R  S  S  S  S  S  T  I  *  F  R  F  *  T  G  T  C  F  I  I  K  E  E  I  H  E  T  N  N  S  *  K  F  S  G  S  L  S  I  G  K  Q  *  Q  E  V  E  E  A  N  C  *  K  G  R  I  W  C  S  F  T  S  *  *  R  F  R  I  *  V  *  F  G  D  A  E  Q  E  I  H  E  A  S  C  S  K  G  G  T  F  G  G  F  C  S  W  E  *  F  C  G  R  G  R  S  R  W  N  G  A  R  E  S  E  E  E  L  V  D  F  T  F  Q  K  E  A  *  E  G  *  E  S  *  R  *  R  V  C  T  C  R  *  P  C  S  G  C  R  S  *  T  E  V  A  S  S  L   : *  *  R  E  R  K  W  Y  Q  E  L  K  W  :  S  R  *  S  G  P  V  N  S  S  *  V  P  F  *  S  S  R  C  *  W  S  D  I  L  S  R  G  *  C  T  C  E   : G  C  *  W  *  G  R  L  H  L  Q  D  C  *  I  L  *  S  S  *  R  S  A  V  F  Y  S  S  V  V  L  Q  S  *  G  Y   : C  Y  *  K  P  *  S  V  H  *  Q  K  T  C  I  P  F  *  N  Q  G  *  Q  S  S  *  L  P  C  D  Q  T  K  D  C  S  C  A  L  K   : C  N  F  T  V  Q  G  K  C  K  I  K  L  *  F  L  L  *  H  E  V  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21465" stop="20809"/>
                    <exon start="20537" stop="20500"/>
                    <exon start="20406" stop="20307"/>
                    <exon start="19050" stop="18943"/>
                    <exon start="18859" stop="18740"/>
                    <exon start="18659" stop="18591"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSYIPSSSRHCTHCTFAAAAATYYFIFSDIPMPSKRKSSPATKPESSSGSRKSKRLVVERPDPVVAQPSDSDFEPEPVLSSKKKSTRRTTAESSVVACQSESNNKKLKKPTVEKAESGVASPADRDFVSESDSETPSKKSTRRAAVKVEPLVDSVAGSDFVEEEEVDGMELGSLKKSLSISPSKRKPKRAEKVKDEECVLAGDPVPDAEARLKWPHRYNKGKENGTKSLNGQDDPDQLIQAKCHFSRADVDGQIYYLEDDAHVKAADGEDDYICKIVEFFEAVDGVQYFTAQWFYRAKDTVIKSHDQFIDKKRVFLSEIKDDNPLDCLVTKLKIVPVPSNATSQFKENVKSNCDFYYDMKYLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22597" PGL_stop="24761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22597" e_stop="22624"/>
            <exon e_start="24111" e_stop="24761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="0.964"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="22597" e_stop="22624" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.956">
            <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24111" e_stop="24761" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22597" stop="22624"/>
              <exon start="24111" stop="24761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACTCTTTCTCTCTATCAATTTGTAG : ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAG</gDNA_template>
            <first_frame> P  T  L  S  L  Y  Q  F  V   : D  A  F  T  G  D  D  I  N  S  A  L  R  K  L  L  *  V  S  *  Y  W  F  R  L  F  R  T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  I  Q  G  L  *  I  S  S  H  S  T  M  *  I  W  S  *  D  W  L  L  Y  R  S  L  R  Q  M  *  N  S  L  V  E  I  I  H  W  Q  C  F  Q  S  R  L  C  R  E  G  E  M  R  R  T  *  N  G  G  L  P  *  S  S  K  W  E  V  P  *  I  C  K  A  E  V  L  P  S  I  S  *  C  M  D  W  C  K  R  I  E  S  Q  S  E  </first_frame>
            <second_frame>  Q  L  F  L  S  I  N  L  *  :  M  H  L  L  V  M  I  S  I  Q  P  *  E  N  Y  F  E  Y  P  D  I  G  F  V  S  S  G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A  Y  K  A  C  E  S  Q  V  T  Q  Q  C  E  S  G  A  R  I  G  C  S  I  A  A  S  D  K  C  K  T  P  W  W  K  S  F  T  G  S  A  S  N  Q  D  F  A  E  R  A  R  C  E  E  R  E  M  E  A  C  L  E  A  A  N  G  K  C  H  E  F  A  K  Q  K  C  F  P  A  F  R  D  A  W  I  G  V  K  G  L  S  P  K  V  K </second_frame>
            <third_frame>   N  S  F  S  L  S  I  C  R :   C  I  Y  W  *  *  Y  Q  F  S  L  E  K  T  T  L  S  I  L  I  L  V  S  S  L  Q  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L  H  T  R  L  V  N  L  K  S  L  N  N  V  N  L  E  L  G  L  V  A  L  S  Q  P  Q  T  N  V  K  L  L  G  G  N  H  S  L  A  V  L  P  I  K  T  L  Q  R  G  R  D  A  K  N  V  K  W  R  L  A  L  K  Q  Q  M  G  S  A  M  N  L  Q  S  R  S  A  S  Q  H  F  V  M  H  G  L  V  *  K  D  *  V  P  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24147" stop="24761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENYFEYPDIGFVSSGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASAYKACESQVTQQCESGARIGCSIAASDKCKTPWWKSFTGSASNQDFAERARCEEREMEACLEAANGKCHEFAKQKCFPAFRDAWIGVKGLSPKVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26685" PGL_stop="36207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26685" e_stop="27065"/>
            <exon e_start="28092" e_stop="28220"/>
            <exon e_start="28331" e_stop="28404"/>
            <exon e_start="28490" e_stop="28559"/>
            <exon e_start="30422" e_stop="30477"/>
            <exon e_start="30633" e_stop="30704"/>
            <exon e_start="30852" e_stop="30946"/>
            <exon e_start="31030" e_stop="31096"/>
            <exon e_start="31183" e_stop="31312"/>
            <exon e_start="31422" e_stop="31640"/>
            <exon e_start="31729" e_stop="31865"/>
            <exon e_start="33757" e_stop="33931"/>
            <exon e_start="34200" e_stop="34290"/>
            <exon e_start="34495" e_stop="34652"/>
            <exon e_start="35518" e_stop="35706"/>
            <exon e_start="35966" e_stop="36207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26685" e_stop="27065" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28092" e_stop="28220" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28331" e_stop="28404" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28490" e_stop="28559" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.625" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30422" e_stop="30477" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.992">
            <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30633" e_stop="30704" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30852" e_stop="30946" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.946">
            <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31030" e_stop="31096" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.976">
            <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31183" e_stop="31312" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.932">
            <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31422" e_stop="31640" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31729" e_stop="31865" e_length="137"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33757" e_stop="33931" e_length="175"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="34200" e_stop="34290" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.713" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="34495" e_stop="34652" e_length="158"/>
          </exon>
          <intron i_serial="14" don_prob="0.970" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="35518" e_stop="35706" e_length="189"/>
          </exon>
          <intron i_serial="15" don_prob="0.925" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259"/>
          </intron>
          <exon e_serial="16" e_score="0.992">
            <gDNA_exon_boundary e_start="35966" e_stop="36207" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26685" stop="27065"/>
              <exon start="28092" stop="28220"/>
              <exon start="28331" stop="28404"/>
              <exon start="28490" stop="28559"/>
              <exon start="30422" stop="30477"/>
              <exon start="30633" stop="30704"/>
              <exon start="30852" stop="30946"/>
              <exon start="31030" stop="31096"/>
              <exon start="31183" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31865"/>
              <exon start="33757" stop="33931"/>
              <exon start="34200" stop="34290"/>
              <exon start="34495" stop="34652"/>
              <exon start="35518" stop="35706"/>
              <exon start="35966" stop="36207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31189" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG : GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG : GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG : GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC : GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG : TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG : CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG : AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG : GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG : ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG : GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG : GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG : GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG : GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG : GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAAT</gDNA_template>
            <first_frame> T  F  V  D  I  S  F  G  C  F  F  N  K  P  *  H  Q  D  L  F  N  L  T  A  H  S  S  F  Y  L  F  R  S  L  L  K  T  C  *  R  I  Q  T  I  N  F  V  L  M  M  V  T  L  G  F  V  L  L  A  L  F  V  K  N  A  N  A  C  R  C  *  K  T  S  S  Q  R  E  G  K  K  F  R  K  D  L  C  C  *  G  K  S  R  R  V  E  E  E  M  G  D  Q  S  G  G  L  S  A  N  N  K  G  T  E  Q  D  D  D  G  K  N  S  P  I  P  K  K  :  V  K  V  G  M  S  P  V  Y  Q  V  E  R  K  L  G  K  G  G  F  G  Q  V  F  L  G  R  R  L  S  G  G  N  E  S  S  N  G  Q  G  A  V  E  :  V  A  L  K  F  E  H  M  K  S  K  G  C  N  Y  G  P  P  H  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  S  V  H  Y  K  G  R  V  G  D  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  A :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  S  I  M  H  A  Q  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  L  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  R  E  N  V  K  G  P  H  V  V  Y  D  Q  R  P  D  M  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  F  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  S  P  L  R  E  F  L  D  I  V  I  N  M  K  F  D  E  E  P  N  Y  S  K  L  I  S  L  F  G  S  L  L  G  P  D  P  A  I  R  P  I  N  T  D  G  A  Q  K  :  I  L  Q  V  G  Q  K  R  G  R  L  N  V  E  E  G  E  E  Q  P  R  K  K  V  R  I  G  V  P  A  S  Q  W  I  S  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  T  D  T  R  L  A  E  H  V  E  K  G  T  E  D  G  L  Y  I  S  C  V  A  S  C  S  D  F  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  Q  S  F  L  H  K  :  E  W  V  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  A  T  N  G  S  S  L  V  V  M  S  K   : G  T  Q  F  S  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  N  V  T  S  M  A  T  A  G  S  R  W  A  V  V  M  S  R  N  S  G  V  S  N  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  L  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  A  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  E  D  G  K  S  D  V  G  H  F  S  F  T  P  F  I  F  S  L  S  V  N  C  K  K  *  G  N  L  N  Y  G  G  T  C  F  F  *  L  V  W  I  V  A  N  F  L  V  S  C  V  H  T  I  N  S  T  K  L  Q   </first_frame>
            <second_frame>  L  L  L  I  F  L  L  D  V  S  S  T  N  P  S  I  K  T  S  L  I  L  L  L  I  H  L  S  I  C  F  D  R  C  *  K  L  V  E  E  F  K  R  S  I  L  Y  *  *  W  S  L  W  V  L  F  Y  L  H  C  L  *  R  T  L  M  P  V  G  V  E  K  P  A  A  S  G  K  G  R  S  F  V  K  T  C  A  A  K  A  K  A  E  E  L  K  R  K  W  G  I  R  A  V  G  *  V  L  I  T  K  E  L  S  K  M  M  M  V  K  T  L  L  S  L  K  R :   *  K  *  E  C  R  Q  F  I  R  L  K  G  S  *  V  K  V  G  L  V  R  S  F  W  V  V  V  F  L  V  E  M  N  L  Q  M  V  K  G  L  L  R :   L  H  *  N  L  S  I  *  K  A  K  A  V  T  M  V  L  H  M  S  G  K  F  T   : I  L  L  E  A  A  M  E  C  L  A  C  I  I  K  G  G  *  E  T  I  T  *  W :   L  W  T  C  *  G  L  A  Y  G  M  Y  G  I  P  L  G  R   : R  C  L  Q  K  W  *  H  V  L  Q  L  S  L  C  Q  F  *  A  *  C  M  H  K   : V  M  C  M  E  M  *  S  Q  R  T  F  C  L  V  S  H  Q  L  C  R  R  R  S  C  S  L  S  T  W  D  *  :  Q  Q  S  G  E  R  M  *  K  V  R  M  W  Y  M  I  S  D  L  T  C  L   : E  G  L  F  G  M  Q  V  L  M  H  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  S  F  F  F  T  E  A  G  C  H  G  K  D  F  R :   E  I  T  N  R  F  W  S  A  K  R  R  W  Q  H  L  Q  K  C  F  A  V  S  V  H  H  L  *  E  N  F  L  I  *  *  *  T  *  N  L  M  K  N  L  I  I  R  S  *  S  P  Y  L  G  A  C  L  D  L  I  L  L  *  G  Q  S  T  L  M  V  P  K  R :   F  F  K  L  A  K  S  G  G  D  *  M  *  R  R  G  K  S  S  L  E  R  R  F  A  S  E  F  L  H  H  S  G  F  R  F  T  M  L  G  S  P  *  N  R   : G  T  I  I  M  *  Q  I  Q  D  *  Q  S  M  W  R  K  G  L  K  M  D  Y  T  *  V  V  W  H  L  V  P  T  S  G  L  L  S  W  M  L  E  P  I  S  L  A  K  F  M  S  Y  H  N  H  S  C  T  R :   S  G  L  W  N  S  G  R  R  T  I  I  L  V  L  L  L  V  L  P  M  E  A  L  L  L  *  C  Q  K  :  A  H  S  S  V  S  S  L  I  K  *  V  S  H  S  H  S  S  G  *  A  R  S  G  K  K  G  S  M  *  P  P  W  Q  L  L  E  V  G  G  R  L  L  C  L  V  I  Q  V  S  V  T  R :   *  W  S  L  I  F  F  I  Q  V  K  A  F  I  N  D  G  T  M  V  I  V  L  Q  Q  Q  L  L  H  *  I  K  L  L  L  S  *  V  C  L  D  E  G  L  A  M  R  L  R  R  H  *  E  H  L  S  F  Q  A  H  M  L  R :   K  N  G  Q  K  I  S  I  F  P  V  S  A  M  D  E  L  Y  L  E  R  M  E  N  L  M  L  D  I  F  P  S  P  L  L  F  S  H  C  Q  S  I  V  K  S  E  E  I  L  I  M  V  A  L  A  S  F  S  L  F  G  *  W  Q  T  F  S  S  L  V  Y  I  Q  L  T  A  Q  N  Y  K  </second_frame>
            <third_frame>   F  C  *  Y  F  F  W  M  F  L  Q  Q  T  L  A  S  R  P  L  *  S  Y  C  S  F  I  F  L  F  V  S  I  A  V  E  N  L  L  K  N  S  N  D  Q  F  C  I  D  D  G  H  F  G  F  C  S  T  C  I  V  C  K  E  R  *  C  L  *  V  L  K  N  Q  Q  P  A  G  R  E  E  V  S  *  R  P  V  L  L  R  Q  K  Q  K  S  *  R  G  N  G  G  S  E  R  W  V  E  C  *  *  Q  R  N  *  A  R  *  *  W  *  K  L  S  Y  P  *  K   : G  E  S  R  N  V  A  S  L  S  G  *  K  E  V  R  *  R  W  V  W  S  G  L  F  G  S  S  S  F  W  W  K  *  I  F  K  W  S  R  G  C  *   : G  C  T  E  I  *  A  Y  E  K  Q  R  L  *  L  W  S  S  T  *  V  A  S  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  R  A  L  *  R  E  G  R  R  L  L  R  N   : G  Y  G  H  A  R  A  *  L  M  G  C  M  E  F  L  W  A  G  :  D  V  C  R  N  G  S  M  Y  C  S  *  V  S  V  N  F  K  H  N  A  C  T  R  :  L  C  A  W  R  C  K  A  R  E  L  F  A  W  S  A  I  N  S  A  G  E  E  V  V  P  C  R  L  G  T  S :   N  K  V  E  R  E  C  E  R  S  A  C  G  I  *  S  A  T  *  H  V  *  :  R  D  C  S  V  C  K  C  S  C  T  L  G  K  D  C  Q  *  K  R  *  S  G  I  T  C  I  Y  T  H  F  S  S  Q  R  Q  V  A  M  A  R  I  S   : G  R  *  Q  I  V  F  G  L  Q  K  E  D  G  N  I  S  R  N  A  L  L  F  L  S  I  T  S  E  R  I  S  *  Y  S  N  K  H  E  I  *  *  R  T  *  L  F  E  V  N  L  L  I  W  E  L  A  W  T  *  S  C  Y  K  A  N  Q  H  *  W  C  P  K   : D  S  S  S  W  P  K  A  G  E  I  K  C  R  G  G  G  R  A  A  *  K  E  G  S  H  R  S  S  C  I  T  V  D  F  D  L  Q  C  *  E  A  H  E  T  E  :  V  P  L  *  C  N  R  Y  K  T  S  R  A  C  G  E  R  D  *  R  W  I  I  H  K  L  C  G  I  L  F  R  L  L  G  Y  Y  H  G  C  W  N  Q  F  H  *  P  S  L  *  A  I  T  I  I  L  A  Q   : G  V  G  Y  G  T  V  G  E  E  L  L  Y  *  F  S  C  W  C  Y  Q  W  K  L  S  C  C  N  V  K  R :   H  T  V  Q  S  A  V  L  *  S  K  *  V  I  P  I  Q  V  D  K  Q  E  V  E  R  R  V  Q  C  N  L  H  G  N  C  W  K  *  V  G  G  C  Y  V  S  *  F  R  C  Q  *  P   : G  S  G  A  *  F  S  L  S  K  *  R  H  S  *  T  M  G  Q  W  L  S  Y  Y  S  N  S  C  Y  I  R  S  S  C  S  Y  P  E  C  A  S  T  K  A  W  R  *  D  S  G  D  I  E  N  I  S  V  S  K  H  T  C  *   : G  K  M  G  K  K  S  L  S  F  L  S  L  L  W  T  N  C  I  L  R  G  W  K  I  *  C  W  T  F  F  L  H  P  F  Y  F  L  I  V  S  Q  L  *  K  V  R  K  S  *  L  W  W  H  L  L  L  L  A  C  L  D  S  G  K  L  S  R  L  L  C  T  Y  N  *  Q  H  K  I  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26952" stop="27065"/>
                    <exon start="28092" stop="28220"/>
                    <exon start="28331" stop="28404"/>
                    <exon start="28490" stop="28559"/>
                    <exon start="30422" stop="30477"/>
                    <exon start="30633" stop="30704"/>
                    <exon start="30852" stop="30946"/>
                    <exon start="31030" stop="31096"/>
                    <exon start="31183" stop="31312"/>
                    <exon start="31422" stop="31640"/>
                    <exon start="31729" stop="31865"/>
                    <exon start="33757" stop="33931"/>
                    <exon start="34200" stop="34290"/>
                    <exon start="34495" stop="34652"/>
                    <exon start="35518" stop="35706"/>
                    <exon start="35966" stop="36025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1833</number_coding_nucleotides>
                  <number_encoded_amino_acids>611</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKSRRVEEEMGDQSGGLSANNKGTEQDDDGKNSPIPKKVKVGMSPVYQVERKLGKGGFGQVFLGRRLSGGNESSNGQGAVEVALKFEHMKSKGCNYGPPHEWQVYNTLGGSHGVPSVHYKGRVGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVACIAVESLSILSIMHAQGYVHGDVKPENFLLGQPSTLQEKKLFLVDLGLATKWRENVKGPHVVYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDNKSFLVCKKKMATSPEMLCCFCPSPLREFLDIVINMKFDEEPNYSKLISLFGSLLGPDPAIRPINTDGAQKILQVGQKRGRLNVEEGEEQPRKKVRIGVPASQWISIYNARKPMKQRYHYNVTDTRLAEHVEKGTEDGLYISCVASCSDFWAIIMDAGTNFTSQVYELSQSFLHKEWVMEQWEKNYYISSLAGATNGSSLVVMSKGTQFSQQSYKVSESFPFKWISKKWKEGFNVTSMATAGSRWAVVMSRNSGVSNQVVELDFLYPSEGIHKRWDNGYRITATAATLDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWAKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="57253" PGL_stop="49275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57253" e_stop="57183"/>
            <exon e_start="56831" e_stop="56776"/>
            <exon e_start="55119" e_stop="54990"/>
            <exon e_start="54730" e_stop="54619"/>
            <exon e_start="52354" e_stop="52255"/>
            <exon e_start="49956" e_stop="49878"/>
            <exon e_start="49781" e_stop="49610"/>
            <exon e_start="49501" e_stop="49421"/>
            <exon e_start="49291" e_stop="49275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="0.921" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.468" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.305" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="57253" e_stop="57183" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="0.921">
            <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56831" e_stop="56776" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55119" e_stop="54990" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54730" e_stop="54619" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52354" e_stop="52255" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49956" e_stop="49878" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.468">
            <gDNA_intron_boundary i_start="49877" i_stop="49782" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49781" e_stop="49610" e_length="172"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49609" i_stop="49502" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49501" e_stop="49421" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.305">
            <gDNA_intron_boundary i_start="49420" i_stop="49292" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="0.941">
            <gDNA_exon_boundary e_start="49291" e_stop="49275" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57253" stop="57183"/>
              <exon start="56831" stop="56776"/>
              <exon start="55119" stop="54990"/>
              <exon start="54730" stop="54619"/>
              <exon start="52354" stop="52255"/>
              <exon start="49956" stop="49878"/>
              <exon start="49781" stop="49610"/>
              <exon start="49501" stop="49421"/>
              <exon start="49291" stop="49275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAG : GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG : ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA : ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG : CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG : ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG : TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG : GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCA : GTTTGTTCAGTTTGGTG</gDNA_template>
            <first_frame> V  K  V  E  I  *  L  G  *  A  I  T  G  *  M  V  I  S  S  D  Q  L  F  R :   L  *  S  I  S  V  I  S  S  A  S  Q  G  D  A  C  Y  E   : D  C  Y  S  W  W  D  W  A  R  I  Q  Q  T  N  K  G  D  W  *  S  C  *  L  *  T  S  R  L  V  K  *  M  A  V  N  A  L  Y  L  Y  *  A  Q :   Y  I  P  H  *  E  G  K  A  T  S  G  R  *  W  Y  I  L  F  L  Q  L  N  G  R  N  F  C  C  V  W  Q  G  L  S  L  W  :  H  N  V  V  *  L  L  L  G  L  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  I  S  E   : D  *  K  M  W  L  W  N  C  G  R  *  R  Y  Q  T  R  R  L  C  Y  R  V  C  W  R  S :   Y  *  *  Q  N  M  *  R  E  A  L  E  N  E  A  *  W  R  N  K  L  L  L  V  *  N  Q  S  G  Y  G  D  *  C  H  L  Q  G  Q  Q  I  P  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  N  K  N  W  H  I  C  N  T  R  H  *  K  G  R  A  S  D  L  *  L  P  :  V  C  S  V  W   </first_frame>
            <second_frame>  S  R  L  K  F  N  W  D  E  Q  *  Q  A  K  W  S  L  A  Q  I  S  F  S   : G  Y  S  Q  S  V  L  Y  P  V  P  V  K  V  M  P  A  M  K  :  T  A  I  H  G  G  I  G  H  V  F  S  K  L  I  K  E  I  G  D  P  V  D  F  E  L  P  D  W  L  N  K  W  Q  S  M  P  Y  T  F  I  K  R   : N  I  Y  L  T  K  K  V  K  R  R  L  E  D  D  G  I  F  C  S  C  S  S  T  A  E  T  S  V  V  C  G  K  D  C  L  C  G :   I  M  L  S  S  C  S  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  L  V  K  :  T  E  K  C  G  S  G  I  V  A  D  E  D  I  K  R  G  D  F  V  I  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  M  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  K  W :   M  I  D  G  E  T  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  </second_frame>
            <third_frame>   Q  G  *  N  L  T  G  M  S  N  N  R  L  N  G  H  *  L  R  S  A  F  Q  :  V  I  V  N  Q  C  Y  I  Q  C  Q  S  R  *  C  L  L  *  R :   L  L  F  M  V  G  L  G  T  Y  S  A  N  *  *  R  R  L  V  I  L  L  T  L  N  F  Q  I  G  *  I  N  G  S  Q  C  P  I  P  L  L  S  A  :  I  Y  T  S  L  R  R  *  S  D  V  W  K  M  M  V  Y  F  V  P  A  A  Q  R  Q  K  L  L  L  C  V  A  R  I  V  S  V   : A  *  C  C  L  A  A  P  R  V  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  N  *  *  R :   L  K  N  V  A  L  E  L  W  Q  M  K  I  S  N  E  E  T  L  L  *  S  M  L  E  K  :  L  L  M  T  K  H  V  K  R  G  F  G  K  *  S  I  V  E  K  Q  T  S  T  C  V  K  S  I  G  I  W  *  L  M  P  L  T  R  A  T  N  P  D  T  L  I  I  V  V  V  Q  I  L  R  C  R  N   : G  *  L  M  V  K  Q  E  L  A  Y  L  Q  H  E  T  L  K  G  A  S  I  *  P  M  I  T   : S  L  F  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57219" stop="57183"/>
                    <exon start="56831" stop="56776"/>
                    <exon start="55119" stop="54990"/>
                    <exon start="54730" stop="54619"/>
                    <exon start="52354" stop="52255"/>
                    <exon start="49956" stop="49878"/>
                    <exon start="49781" stop="49610"/>
                    <exon start="49501" stop="49421"/>
                    <exon start="49291" stop="49276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAKWSLAQISFSGYSQSVLYPVPVKVMPAMKTAIHGGIGHVFSKLIKEIGDPVDFELPDWLNKWQSMPYTFIKRNIYLTKKVKRRLEDDGIFCSCSSTAETSVVCGKDCLCGIMLSSCSSGCKCGSSCLNKPFHQRPVKKMKLVKTEKCGSGIVADEDIKRGDFVIEYVGEVIDDKTCEERLWKMKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWMIDGETRIGIFATRDIKRGEHLTYDYQFVQFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60533" PGL_stop="59794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60533" e_stop="59794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="60533" e_stop="59794" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60533" stop="59794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTA</gDNA_template>
            <first_frame> E  I  I  V  C  N  Y  I  S  *  V  H  V  A  *  Q  R  *  T  T  F  I  I  M  L  Q  S  P  Y  N  *  N  C  N  Y  V  T  S  I  Q  Q  F  Q  H  L  T  *  L  N  S  L  N  Y  I  S  I  R  V  I  F  *  K  I  N  L  S  N  F  R  S  *  G  R  S  P  K  P  N  I  F  L  C  S  L  N  S  V  I  *  *  Y  G  T  V  D  S  K  W  T  P  L  F  F  E  L  F  K  L  P  F  I  I  F  V  H  N  N  N  N  I  F  G  *  I  I  S  R  V  Y  E  E  *  C  V  H  K  S  K  S  F  Q  *  I  F  I  L  M  I  A  D  I  W  S  D  K  *  Y  T  K  Y  L  N  I  *  K  *  F  F  *  N  H  P  F  S  C  T  S  L  K  G  D  Q  Y  V  I  *  N  K  F  Y  V  P  S  H  F  V  K  K  N  V  F  *  V  H  V  L  L  K  I  M  N  Y  L  V  V  L  Q  R  N  *  T  Q  S  D  L  I  S  I  G  K  T  N  F  D  *  S  N  M  L  C  V  T  N  T  T  S   </first_frame>
            <second_frame>  R  *  L  C  V  I  I  Y  H  R  C  M  L  P  S  K  G  K  R  L  S  *  L  C  Y  N  L  H  I  I  R  I  V  I  M  *  Q  V  Y  N  N  F  N  I  S  L  N  *  T  P  L  I  I  L  V  *  G  L  Y  S  R  K  S  I  *  V  I  L  E  V  K  E  G  A  L  N  L  I  F  S  F  V  V  *  I  V  *  Y  N  N  M  V  P  *  I  Q  S  G  L  L  Y  F  L  S  Y  L  S  Y  L  L  *  S  S  S  I  T  I  I  T  Y  L  V  R  L  *  V  G  S  M  K  S  S  A  Y  I  N  L  R  V  S  N  R  S  L  F  *  *  L  L  I  Y  G  V  I  N  N  T  P  N  I  *  I  Y  K  N  N  F  F  K  I  T  L  F  L  A  L  A  *  K  E  I  N  M  *  F  K  T  N  F  T  Y  L  V  I  S  L  K  K  M  Y  F  K  Y  M  C  C  *  K  *  *  T  T  *  L  F  Y  K  E  I  E  L  K  V  I  *  Y  Q  *  E  K  Q  T  L  I  S  Q  I  C  Y  A  *  L  I  L  L  P  </second_frame>
            <third_frame>   D  N  C  V  *  L  Y  I  I  G  A  C  C  L  A  K  V  N  D  F  H  N  Y  V  T  I  S  I  *  L  E  L  *  L  C  D  K  Y  T  T  I  S  T  S  H  L  I  K  L  P  *  L  Y  *  Y  K  G  Y  I  L  E  N  Q  F  K  *  F  *  K  L  R  K  E  P  *  T  *  Y  F  P  L  *  S  K  *  C  N  I  I  I  W  Y  R  R  F  K  V  D  S  F  I  F  *  V  I  *  V  T  F  Y  N  L  R  P  *  Q  *  *  H  I  W  L  D  Y  K  *  G  L  *  R  V  V  R  T  *  I  *  E  F  P  I  D  L  Y  F  N  D  C  *  Y  M  E  *  *  I  I  H  Q  I  F  E  Y  I  K  I  I  F  L  K  S  P  F  F  L  H  *  L  K  R  R  S  I  C  N  L  K  Q  I  L  R  T  *  S  F  R  *  K  K  C  I  L  S  T  C  V  V  K  N  N  E  L  L  S  C  F  T  K  K  L  N  S  K  *  F  D  I  N  R  K  N  K  L  *  L  V  K  Y  V  M  R  N  *  Y  Y  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61525" PGL_stop="62309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61525" e_stop="61830"/>
            <exon e_start="61914" e_stop="62149"/>
            <exon e_start="62232" e_stop="62309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="0.859"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61525" e_stop="61830" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61831" i_stop="61913" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="61914" e_stop="62149" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62150" i_stop="62231" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.859">
            <gDNA_exon_boundary e_start="62232" e_stop="62309" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61525" stop="61830"/>
              <exon start="61914" stop="62149"/>
              <exon start="62232" stop="62309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAACTTAATGGAGCCGTGGAAGGACCTTACCGGGAAAGTAGTGATGGTGACAGGGGCATCCTCTGGAATCGGGCTTGAGTTTTGTCTGGACTTGGCCAAAGCTGGTTGCAGCATAATTGCTGCTGCTCGTCGTATTGACAGGCTGGAATCTCTCTGCAACGACATGAATTCAGAGGGTATTCGGCGAGCATTTGCCCTCAAGCTTGATGTCATGTCCAATGGTGCCACCATGGAGGCCGCTGTAGAAAGAGCTTGGGATGCCTTTGGACATATCAATGTCTTGATTAACAATGCTGGCATAAGAG : GTCCTGTGAGCTCTCCACTGGAATTGTCAGAGGAGGAATGGGAACATACCTTTAACACAAATCTTAGAGGGGCATGGTTGCTGTCCAAATATGTGTGTAGACGCATGCGTGATGCCAAATTACAGGGCGGAGGATCTGTTATTAATATCTCTTCAGTTTCTGGTCTGAATCGAGTACTAGTACCCGGGGGTCTTGCTTACGCTTGTTCAAAGATGGCTCTGGACATGCTCACTAGG : ATGATGGCACTTGAATTGGGAGTACACAATATCAGAGTGAACTCAGTAGCACCAGGAGTTTTCAAATCTCAGATAACA</gDNA_template>
            <first_frame> I  T  *  W  S  R  G  R  T  L  P  G  K  *  *  W  *  Q  G  H  P  L  E  S  G  L  S  F  V  W  T  W  P  K  L  V  A  A  *  L  L  L  L  V  V  L  T  G  W  N  L  S  A  T  T  *  I  Q  R  V  F  G  E  H  L  P  S  S  L  M  S  C  P  M  V  P  P  W  R  P  L  *  K  E  L  G  M  P  L  D  I  S  M  S  *  L  T  M  L  A  *  E  :  V  L  *  A  L  H  W  N  C  Q  R  R  N  G  N  I  P  L  T  Q  I  L  E  G  H  G  C  C  P  N  M  C  V  D  A  C  V  M  P  N  Y  R  A  E  D  L  L  L  I  S  L  Q  F  L  V  *  I  E  Y  *  Y  P  G  V  L  L  T  L  V  Q  R  W  L  W  T  C  S  L  G :   *  W  H  L  N  W  E  Y  T  I  S  E  *  T  Q  *  H  Q  E  F  S  N  L  R  *   </first_frame>
            <second_frame>  *  L  N  G  A  V  E  G  P  Y  R  E  S  S  D  G  D  R  G  I  L  W  N  R  A  *  V  L  S  G  L  G  Q  S  W  L  Q  H  N  C  C  C  S  S  Y  *  Q  A  G  I  S  L  Q  R  H  E  F  R  G  Y  S  A  S  I  C  P  Q  A  *  C  H  V  Q  W  C  H  H  G  G  R  C  R  K  S  L  G  C  L  W  T  Y  Q  C  L  D  *  Q  C  W  H  K  R :   S  C  E  L  S  T  G  I  V  R  G  G  M  G  T  Y  L  *  H  K  S  *  R  G  M  V  A  V  Q  I  C  V  *  T  H  A  *  C  Q  I  T  G  R  R  I  C  Y  *  Y  L  F  S  F  W  S  E  S  S  T  S  T  R  G  S  C  L  R  L  F  K  D  G  S  G  H  A  H  *   : D  D  G  T  *  I  G  S  T  Q  Y  Q  S  E  L  S  S  T  R  S  F  Q  I  S  D  N  </second_frame>
            <third_frame>   N  L  M  E  P  W  K  D  L  T  G  K  V  V  M  V  T  G  A  S  S  G  I  G  L  E  F  C  L  D  L  A  K  A  G  C  S  I  I  A  A  A  R  R  I  D  R  L  E  S  L  C  N  D  M  N  S  E  G  I  R  R  A  F  A  L  K  L  D  V  M  S  N  G  A  T  M  E  A  A  V  E  R  A  W  D  A  F  G  H  I  N  V  L  I  N  N  A  G  I  R   : G  P  V  S  S  P  L  E  L  S  E  E  E  W  E  H  T  F  N  T  N  L  R  G  A  W  L  L  S  K  Y  V  C  R  R  M  R  D  A  K  L  Q  G  G  G  S  V  I  N  I  S  S  V  S  G  L  N  R  V  L  V  P  G  G  L  A  Y  A  C  S  K  M  A  L  D  M  L  T  R  :  M  M  A  L  E  L  G  V  H  N  I  R  V  N  S  V  A  P  G  V  F  K  S  Q  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61527" stop="61830"/>
                    <exon start="61914" stop="62149"/>
                    <exon start="62232" stop="62309"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLMEPWKDLTGKVVMVTGASSGIGLEFCLDLAKAGCSIIAAARRIDRLESLCNDMNSEGIRRAFALKLDVMSNGATMEAAVERAWDAFGHINVLINNAGIRGPVSSPLELSEEEWEHTFNTNLRGAWLLSKYVCRRMRDAKLQGGGSVINISSVSGLNRVLVPGGLAYACSKMALDMLTRMMALELGVHNIRVNSVAPGVFKSQIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="68210" PGL_stop="65284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68210" e_stop="68141"/>
            <exon e_start="67972" e_stop="67761"/>
            <exon e_start="67675" e_stop="67443"/>
            <exon e_start="67372" e_stop="67153"/>
            <exon e_start="67070" e_stop="66689"/>
            <exon e_start="66615" e_stop="66508"/>
            <exon e_start="66368" e_stop="66165"/>
            <exon e_start="66070" e_stop="65969"/>
            <exon e_start="65882" e_stop="65709"/>
            <exon e_start="65624" e_stop="65284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.680" e_score="0.986"/>
          <exon-intron don_prob="0.982" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="68210" e_stop="68141" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.680">
            <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67972" e_stop="67761" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.561">
            <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67675" e_stop="67443" e_length="233"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67372" e_stop="67153" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.890">
            <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="66689" e_length="382"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66508" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66368" e_stop="66165" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66070" e_stop="65969" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65882" e_stop="65709" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="65624" e_stop="65284" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68210" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67153"/>
              <exon start="67070" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAACGGACATGGCTTCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG : TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG : GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG : CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC : GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACTATAAT</gDNA_template>
            <first_frame> A  N  G  H  G  F  *  T  W  N  S  L  R  M  A  M  G  K  P  W  Q  L  *   : V  L  G  V  G  T  I  C  W  S  *  H  I  L  I  L  E  G  W  R  Y  W  I  H  S  H  T  S  I  S  T  L  Q  I  Y  S  Q  P  D  M  D  I  V  I  A  P  Q  D  C  *  G  *  *  *  N  C  *  *  K  H  *  V  *  S  S  *  *  R  K  Q  L  :  G  *  S  N  Y  I  *  R  A  I  I  L  C  W  I  P  E  N  G  T  S  S  S  L  A  S  M  E  K  W  W  I  H  C  N  C  I  G  P  Y  W  S  C  *  V  Y  L  L  L  V  S  *  S  S  A  S  P  F  S  L  F  A  L  S  F  S  S  S  L  L  Y  C  Y  S  T  Y  Q  C :   I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  :  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  Y  N </first_frame>
            <second_frame>  Q  T  D  M  A  S  K  P  G  I  L  S  E  W  P  W  A  N  L  G  N  F  K  :  Y  L  V  L  A  P  F  V  G  H  S  I  Y  S  F  L  R  D  G  D  I  G  Y  I  A  I  L  P  F  L  L  F  R  F  I  H  N  Q  I  W  I  S  L  S  R  H  R  T  A  K  G  N  N  R  I  V  D  R  S  I  E  F  D  Q  V  D  R  E  N  N  W :   D  D  Q  I  I  F  N  G  L  L  Y  Y  V  G  Y  L  R  M  E  Q  V  H  H  L  P  L  W  R  S  G  G  F  I  V  T  A  L  A  H  I  G  P  V  E  F  I  Y  Y  W  F  H  R  A  L  H  H  H  F  L  Y  S  R  Y  H  S  H  H  H  S  S  I  V  T  Q  P  I  S   : A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S :   Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T  I   </second_frame>
            <third_frame>   K  R  T  W  L  L  N  L  E  F  S  Q  N  G  H  G  Q  T  L  A  T  L  S :   T  W  C  W  H  H  L  L  V  I  A  Y  T  H  S  *  G  M  E  I  L  D  T  *  P  Y  F  H  F  Y  S  S  D  L  F  T  T  R  Y  G  Y  R  Y  R  A  T  G  L  L  R  V  I  I  E  L  L  I  E  A  L  S  L  I  K  L  I  E  K  T  T   : G  M  I  K  L  Y  L  T  G  Y  Y  T  M  L  D  T  *  E  W  N  K  F  I  T  C  L  Y  G  E  V  V  D  S  L  *  L  H  W  P  I  L  V  L  L  S  L  S  I  I  G  F  I  E  L  C  I  T  I  F  S  I  R  V  I  I  L  I  I  T  P  L  L  L  L  N  L  S  V  :  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P   : R  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68209" stop="68141"/>
                    <exon start="67972" stop="67761"/>
                    <exon start="67675" stop="67443"/>
                    <exon start="67372" stop="67153"/>
                    <exon start="67070" stop="66689"/>
                    <exon start="66615" stop="66508"/>
                    <exon start="66368" stop="66165"/>
                    <exon start="66070" stop="65969"/>
                    <exon start="65882" stop="65709"/>
                    <exon start="65624" stop="65457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1869</number_coding_nucleotides>
                  <number_encoded_amino_acids>623</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTDMASKPGILSEWPWANLGNFKYLVLAPFVGHSIYSFLRDGDIGYIAILPFLLFRFIHNQIWISLSRHRTAKGNNRIVDRSIEFDQVDRENNWDDQIIFNGLLYYVGYLRMEQVHHLPLWRSGGFIVTALAHIGPVEFIYYWFHRALHHHFLYSRYHSHHHSSIVTQPISAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSSYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67389" e_stop="66795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67389" e_stop="66795" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67389" stop="66795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATG</gDNA_template>
            <first_frame> G  M  Y  F  D  S  I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  V  S  N  L  L  T  S  P  Y  T  Y  T  L  *  R  I  F  T  L  S  Q  P  V  D  V  T  A  G  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  </first_frame>
            <second_frame>  G  C  I  L  T  A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S  *  V  I  F  L  P  L  P  T  H  I  L  S  D  E  F  L  H  Y  H  N  L  S  M  S  L  Q  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M </second_frame>
            <third_frame>   D  V  F  *  Q  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P  R  E  *  S  S  Y  L  S  L  H  I  Y  S  L  T  N  F  Y  T  I  T  T  C  R  C  H  C  R  Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67144" stop="66797"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYLSLHIYSLTNFYTITTCRCHCRYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67388" stop="67149"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCILTAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="73700" PGL_stop="71951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73700" e_stop="73559"/>
            <exon e_start="73458" e_stop="71951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="73700" e_stop="73559" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73558" i_stop="73459" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="73458" e_stop="71951" e_length="1508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73700" stop="73559"/>
              <exon start="73458" stop="71951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATCAGAGTTAAGACATATATCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAAC : TTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> P  S  E  L  R  H  I  S  H  L  S  L  T  Y  T  K  E  *  G  *  K  N  S  L  L  I  F  A  F  C  F  A  L  I  L  I  K  R  L  S  L  Y  Q  K  T  F  *   : L  *  H  F  L  I  L  I  M  K  I  L  F  M  F  D  L  P  C  M  V  E  L  Y  S  N  F  C  L  I  I  L  I  S  Y  Y  F  L  Y  Y  N  Y  H  S  K  P  K  S  K  L  N  W  C  R  S  I  L  G  L  I  K  R  P  W  E  L  V  E  I  C  L  L  Q  Q  L  K  K  V  I  S  K  E  F  H  L  R  S  P  L  L  H  L  A  M  *  R  R  P  F  L  L  T  A  S  N  V  L  L  F  D  P  S  L  I  L  F  K  I  S  Y  L  S  P  S  S  I  I  L  P  T  L  T  S  I  S  F  H  L  H  *  L  T  L  P  G  P  L  I  G  S  R  K  V  V  F  P  L  G  Y  G  S  L  D  T  N  V  V  I  M  A  S  V  I  T  N  G  *  M  T  L  L  V  S  S  Y  I  L  H  F  *  H  H  T  L  H  G  S  I  V  I  G  V  I  M  P  T  L  A  P  L  R  M  M  K  C  T  Y  L  G  L  N  P  N  *  D  G  T  T  N  T  *  T  I  H  *  D  E  Y  S  Y  L  P  S  P  S  P  L  P  G  L  Y  T  *  C  S  I  S  Q  A  K  N  M  N  V  L  H  V  T  M  I  Q  I  A  Q  S  I  L  T  A  R  E  C  K  S  T  F  Q  M  Q  V  *  L  Q  L  L  M  Y  Y  T  A  L  L  *  H  K  G  *  L  G  F  C  V  C  T  E  C  L  S  L  S  *  M  D  L  *  C  *  S  L  L  C  T  T  L  M  L  H  C  H  I  M  I  H  R  S  G  I  I  *  E  E  L  *  L  P  *  I  E  T  M  V  Y  *  T  R  C  S  I  M  L  L  I  L  M  S  C  I  I  Y  S  H  T  Y  H  I  T  M  Q  W  R  R  P  T  R  L  S  H  C  *  E  I  I  T  K  L  M  I  P  Q  F  *  R  Q  C  G  G  I  Q  R  S  A  S  M  *  R  R  T  K  D  L  K  E  E  V  F  I  G  I  K  T  S  F  E  S  R  I  P  S  N  W  L  N  L  L  T  *  *  E  D  A  S  I  L  N  N  Y  V  C  F  C  C  I  L  L  L  N  V  G  F  S  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  H  Q  S  *  D  I  Y  L  I  S  L  *  L  I  Q  K  S  K  A  K  R  I  L  F  *  S  L  L  F  A  L  L  *  F  *  L  S  A  Y  H  Y  I  K  K  H  F  N  :  F  N  T  F  L  S  *  *  *  K  F  Y  L  C  L  I  C  H  A  W  L  N  C  I  L  T  S  V  *  *  Y  *  F  H  I  T  F  Y  I  I  T  I  I  V  N  Q  N  P  N  L  I  G  A  D  L  F  *  D  *  S  R  D  H  G  S  W  W  K  Y  V  Y  S  N  N  *  K  K  S  S  P  K  S  S  I  F  E  A  P  F  Y  T  W  R  C  E  E  G  H  S  S  S  L  L  P  T  F  S  Y  S  I  L  L  L  S  Y  S  R  S  H  T  C  L  R  L  L  L  Y  C  Q  H  L  L  P  S  P  S  I  S  I  N  L  P  C  L  A  R  L  L  D  R  A  R  L  C  F  H  W  D  M  G  H  W  T  R  M  W  S  S  W  L  Q  *  L  P  M  G  R  *  H  C  W  S  H  P  T  F  C  T  F  N  T  I  L  C  M  E  A  *  S  S  A  S  S  C  Q  H  W  L  P  *  E  *  *  S  V  H  T  *  V  *  I  Q  T  E  M  V  L  Q  I  L  E  Q  S  I  R  T  S  I  R  T  C  L  H  P  H  L  C  L  A  F  I  L  D  V  Q  Y  L  R  Q  K  I  *  T  F  C  M  S  L  *  S  K  *  P  N  L  F  *  P  R  E  N  A  N  L  H  F  R  C  R  C  D  C  S  Y  L  C  I  I  P  P  C  Y  D  T  R  A  N  L  G  S  V  Y  V  R  S  A  S  P  Y  R  E  W  I  Y  S  V  D  H  S  Y  A  P  H  S  C  F  I  A  T  L  *  F  I  G  V  G  L  S  K  R  S  F  S  Y  R  R  *  R  L  W  Y  T  K  Q  G  V  P  *  C  Y  *  Y  S  C  L  A  S  Y  I  L  I  H  I  T  L  P  C  N  G  G  D  Q  R  D  *  A  I  A  R  R  L  L  P  S  *  *  Y  P  N  F  K  G  N  V  E  G  Y  K  G  V  H  L  C  R  E  G  R  R  I  S  R  K  R  C  L  L  V  *  K  Q  A  L  K  V  E  Y  Q  V  I  G  *  I  F  *  P  N  K  K  M  Q  V  F  *  I  I  M  C  V  F  V  V  F  Y  C  *  M  L  V  L  V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  R  V  K  T  Y  I  S  S  L  F  N  L  Y  K  R  V  R  L  K  E  F  S  F  D  L  C  F  L  L  C  F  N  F  D  *  A  L  I  I  I  S  K  N  I  L  T :   L  T  L  S  Y  P  N  N  E  N  F  I  Y  V  *  F  A  M  H  G  *  I  V  F  *  L  L  F  N  N  I  N  F  I  L  L  F  I  L  *  L  S  *  *  T  K  I  Q  T  *  L  V  Q  I  Y  F  R  I  D  Q  E  T  M  G  A  G  G  N  M  S  T  P  T  T  K  K  S  H  L  Q  R  V  P  S  S  K  P  P  F  T  L  G  D  V  K  K  A  I  P  P  H  C  F  Q  R  S  L  I  R  S  F  S  Y  L  I  Q  D  L  I  L  V  S  V  F  Y  Y  I  A  N  T  Y  F  H  L  L  P  S  P  L  T  Y  L  A  W  P  A  Y  W  I  A  Q  G  C  V  S  T  G  I  W  V  I  G  H  E  C  G  H  H  G  F  S  D  Y  Q  W  V  D  D  T  V  G  L  I  L  H  S  A  L  L  T  P  Y  F  A  W  K  H  S  H  R  R  H  H  A  N  T  G  S  L  E  N  D  E  V  Y  I  P  R  F  K  S  K  L  R  W  Y  Y  K  Y  L  N  N  P  L  G  R  V  F  V  L  A  F  T  L  T  F  A  W  P  L  Y  L  M  F  N  I  S  G  K  K  Y  E  R  F  A  C  H  Y  D  P  N  S  P  I  Y  S  N  R  E  R  M  Q  I  Y  I  S  D  A  G  V  I  A  A  T  Y  V  L  Y  R  L  A  M  T  Q  G  L  T  W  V  L  C  M  Y  G  V  P  L  L  I  V  N  G  F  I  V  L  I  T  L  M  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  D  Y  L  R  G  A  L  A  T  V  D  R  D  Y  G  I  L  N  K  V  F  H  N  V  T  D  T  H  V  L  H  H  I  F  S  Y  I  S  H  Y  H  A  M  E  A  T  N  A  I  K  P  L  L  G  D  Y  Y  Q  V  D  D  T  P  I  L  K  A  M  W  R  D  T  K  E  C  I  Y  V  E  K  D  E  G  S  Q  G  R  G  V  Y  W  Y  K  N  K  L  *  K  *  N  T  K  *  L  V  K  S  F  N  L  I  R  R  C  K  Y  F  E  *  L  C  V  F  L  L  Y  F  I  V  K  C  W  F  *  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73307" stop="72132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQIYFRIDQETMGAGGNMSTPTTKKSHLQRVPSSKPPFTLGDVKKAIPPHCFQRSLIRSFSYLIQDLILVSVFYYIANTYFHLLPSPLTYLAWPAYWIAQGCVSTGIWVIGHECGHHGFSDYQWVDDTVGLILHSALLTPYFAWKHSHRRHHANTGSLENDEVYIPRFKSKLRWYYKYLNNPLGRVFVLAFTLTFAWPLYLMFNISGKKYERFACHYDPNSPIYSNRERMQIYISDAGVIAATYVLYRLAMTQGLTWVLCMYGVPLLIVNGFIVLITLMHHTHASLPHYDSSEWDYLRGALATVDRDYGILNKVFHNVTDTHVLHHIFSYISHYHAMEATNAIKPLLGDYYQVDDTPILKAMWRDTKECIYVEKDEGSQGRGVYWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="76813" PGL_stop="78197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76813" e_stop="76825"/>
            <exon e_start="76913" e_stop="78197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76813" e_stop="76825" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="76913" e_stop="78197" e_length="1285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76813" stop="76825"/>
              <exon start="76913" stop="78197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACTTTGAG : ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGT</gDNA_template>
            <first_frame> F  E  L  *   : D  L  G  Y  S  K  S  K  N  G  R  W  W  *  F  Y  E  *  S  N  N  *  K  S  S  S  K  F  K  A  P  F  Y  D  W  *  Y  Q  E  G  Y  P  S  S  L  L  S  T  L  S  R  S  L  L  F  L  S  Y  L  R  S  H  T  C  L  H  L  L  L  H  R  L  Y  L  F  P  R  P  S  K  T  V  L  S  I  P  S  M  A  Y  L  L  D  R  S  R  M  C  L  H  R  T  M  G  H  C  P  *  M  W  P  P  I  L  *  *  L  P  M  D  K  *  H  Y  R  F  Y  P  P  L  C  T  F  N  T  I  L  L  M  E  I  *  S  S  S  S  S  L  Q  Y  *  F  P  *  A  *  *  K  S  C  A  Q  T  *  S  Q  T  K  M  V  H  *  I  I  R  E  *  S  T  W  T  I  I  I  N  C  L  H  T  H  C  W  L  T  F  I  L  C  H  Q  Y  S  R  *  T  L  *  S  F  C  K  S  L  *  S  I  *  P  Y  L  Q  *  P  *  E  T  T  N  L  H  L  R  C  R  C  D  C  N  Y  L  F  I  I  S  R  C  S  N  T  R  P  N  L  G  Y  M  H  L  W  S  T  P  C  N  C  E  W  V  H  S  V  N  N  F  T  A  S  H  S  C  F  I  A  T  L  *  F  I  R  V  E  L  A  K  R  S  S  S  Y  G  R  *  R  L  W  C  P  K  *  G  V  S  S  Y  R  R  Y  T  R  S  T  S  S  I  F  K  Y  T  T  L  S  C  C  R  G  N  Q  G  H  Q  A  V  T  R  R  I  L  P  I  *  W  N  S  I  L  Q  S  N  M  E  G  F  *  *  V  S  I  C  G  E  R  *  S  I  S  T  S  G  Y  F  L  V  Y  K  L  Q  H  I  I  F  I  N  N  N  W  L  T  N  V  L  A  N  A  *  V  V  V  V  I  C  I  L  D  G  V  L  S  *  *  *  *  Y  C  Y  F  N  F  I   </first_frame>
            <second_frame>  L  N  F  E  :  I  *  D  I  A  K  A  K  M  G  G  G  G  N  S  M  S  N  P  T  T  K  N  R  V  P  S  S  K  P  P  F  T  I  G  D  I  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  S  S  Y  L  I  Y  D  L  I  L  V  F  I  F  Y  Y  I  A  S  T  Y  F  H  V  L  P  K  P  Y  Y  P  Y  L  A  W  P  I  Y  W  I  V  Q  G  C  V  C  T  A  L  W  V  I  A  H  E  C  G  H  Q  S  F  S  D  Y  Q  W  I  N  D  T  I  G  F  I  L  H  S  A  L  L  T  P  Y  F  S  W  K  Y  S  H  R  R  H  H  S  N  T  N  S  L  E  H  D  E  N  H  V  P  K  L  E  V  K  L  K  W  Y  T  K  L  Y  V  N  N  P  L  G  R  L  L  L  I  V  F  T  L  T  A  G  L  P  L  Y  Y  A  I  N  I  A  G  R  P  Y  D  R  F  A  S  H  Y  D  P  Y  S  P  I  Y  N  D  R  E  R  L  Q  I  Y  I  S  D  A  G  V  I  A  T  I  Y  L  L  Y  R  V  A  L  T  Q  G  L  T  W  V  I  C  I  Y  G  V  P  L  V  I  V  N  G  F  I  V  L  I  T  L  L  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  S  W  L  K  G  A  L  A  T  V  D  R  D  Y  G  V  L  N  K  V  F  H  H  I  V  D  T  H  V  L  H  H  L  F  S  S  I  P  H  Y  H  A  V  E  A  T  K  A  I  K  P  L  L  G  E  Y  Y  Q  F  D  G  T  P  F  Y  K  A  I  W  R  D  F  N  E  C  Q  Y  V  E  K  D  E  A  S  Q  H  Q  G  I  F  W  Y  T  N  Y  N  T  *  Y  S  L  I  T  T  G  L  R  M  C  *  P  M  H  E  L  L  L  L  F  V  F  W  M  V  C  Y  H  N  N  N  N  I  V  T  L  I  L  L  </second_frame>
            <third_frame>   *  T  L  R :   F  R  I  *  Q  K  Q  K  W  E  V  V  V  I  L  *  V  I  Q  Q  L  K  I  E  F  Q  V  Q  S  P  L  L  R  L  V  I  S  R  R  L  S  L  L  I  A  F  N  A  L  S  F  A  P  L  P  I  L  F  T  I  S  Y  L  S  S  S  S  I  T  S  P  L  L  I  S  T  S  F  Q  N  R  I  I  H  T  *  H  G  L  F  I  G  S  F  K  D  V  F  A  P  H  Y  G  S  L  P  M  N  V  A  T  N  P  L  V  I  T  N  G  *  M  T  L  S  V  L  S  S  T  L  H  F  *  H  H  T  S  H  G  N  I  V  I  V  V  I  T  P  I  L  I  P  L  S  M  M  K  I  M  C  P  N  L  K  S  N  *  N  G  T  L  N  Y  T  *  I  I  H  L  D  D  Y  Y  *  L  S  S  H  S  L  L  A  Y  L  Y  T  M  P  S  I  *  P  V  D  L  M  I  V  L  Q  V  I  M  I  H  I  A  L  S  T  M  T  V  R  D  Y  K  F  T  S  Q  M  Q  V  *  L  Q  L  F  I  Y  Y  I  A  L  L  *  H  K  A  *  L  G  L  Y  A  S  M  E  Y  P  L  *  L  *  M  G  S  *  C  *  *  L  Y  C  I  T  L  M  L  H  C  H  I  M  I  H  Q  S  G  V  G  *  K  E  L  *  L  R  *  I  E  T  M  V  S  *  I  R  C  F  I  I  S  *  I  H  T  F  Y  I  I  Y  F  Q  V  Y  H  I  I  M  L  S  R  Q  P  R  P  S  S  R  Y  *  E  N  T  T  N  L  M  E  L  H  F  T  K  Q  Y  G  G  I  L  M  S  V  N  M  W  R  K  M  K  H  L  N  I  R  V  F  S  G  I  Q  I  T  T  H  N  I  H  *  *  Q  L  A  Y  E  C  V  S  Q  C  M  S  C  C  C  Y  L  Y  F  G  W  C  V  I  I  I  I  I  I  L  L  L  *  F  Y  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76919" stop="78076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIAKAKMGGGGNSMSNPTTKNRVPSSKPPFTIGDIKKAIPPHCFQRSLVRSSSYLIYDLILVFIFYYIASTYFHVLPKPYYPYLAWPIYWIVQGCVCTALWVIAHECGHQSFSDYQWINDTIGFILHSALLTPYFSWKYSHRRHHSNTNSLEHDENHVPKLEVKLKWYTKLYVNNPLGRLLLIVFTLTAGLPLYYAINIAGRPYDRFASHYDPYSPIYNDRERLQIYISDAGVIATIYLLYRVALTQGLTWVICIYGVPLVIVNGFIVLITLLHHTHASLPHYDSSEWSWLKGALATVDRDYGVLNKVFHHIVDTHVLHHLFSSIPHYHAVEATKAIKPLLGEYYQFDGTPFYKAIWRDFNECQYVEKDEASQHQGIFWYTNYNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78197" PGL_stop="77916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78197" e_stop="77916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="78197" e_stop="77916" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78197" stop="77916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78197" stop="78059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATAAAATTAAAGTAACAATATTATTATTATTATGATAACACACCATCCAAAATACAAATAACAACAACAACTCATGCATTGGCTAACACATTCGTAAGCCAGTTGTTATTAATGAATATTATGTGTTGTAATTTGTATACCAGAAAATACCCTGATGTTGAGATGCTTCATCTTTCTCCACATATTGACACTCATTAAAATCCCTCCATATTGCTTTGTAAAATGGAGTTCCATCAAATTGGTAGTATTCTCCTAGTAACGGCTTGATGGCCTTGGTTG</gDNA_template>
            <first_frame> T  I  K  L  K  *  Q  Y  Y  Y  Y  Y  D  N  T  P  S  K  I  Q  I  T  T  T  T  H  A  L  A  N  T  F  V  S  Q  L  L  L  M  N  I  M  C  C  N  L  Y  T  R  K  Y  P  D  V  E  M  L  H  L  S  P  H  I  D  T  H  *  N  P  S  I  L  L  C  K  M  E  F  H  Q  I  G  S  I  L  L  V  T  A  *  W  P  W  L </first_frame>
            <second_frame>  Q  *  N  *  S  N  N  I  I  I  I  M  I  T  H  H  P  K  Y  K  *  Q  Q  Q  L  M  H  W  L  T  H  S  *  A  S  C  Y  *  *  I  L  C  V  V  I  C  I  P  E  N  T  L  M  L  R  C  F  I  F  L  H  I  L  T  L  I  K  I  P  P  Y  C  F  V  K  W  S  S  I  K  L  V  V  F  S  *  *  R  L  D  G  L  G   </second_frame>
            <third_frame>   N  K  I  K  V  T  I  L  L  L  L  *  *  H  T  I  Q  N  T  N  N  N  N  N  S  C  I  G  *  H  I  R  K  P  V  V  I  N  E  Y  Y  V  L  *  F  V  Y  Q  K  I  P  *  C  *  D  A  S  S  F  S  T  Y  *  H  S  L  K  S  L  H  I  A  L  *  N  G  V  P  S  N  W  *  Y  S  P  S  N  G  L  M  A  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89050" PGL_stop="91765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89050" e_stop="89398"/>
            <exon e_start="90725" e_stop="90834"/>
            <exon e_start="90917" e_stop="90973"/>
            <exon e_start="91055" e_stop="91354"/>
            <exon e_start="91663" e_stop="91765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="0.994"/>
          <exon-intron don_prob="0.845" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.156" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="89050" e_stop="89398" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90725" e_stop="90834" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.949">
            <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90917" e_stop="90973" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91055" e_stop="91354" e_length="300"/>
          </exon>
          <intron i_serial="4" don_prob="0.156" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91355" i_stop="91662" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="91663" e_stop="91765" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89050" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91354"/>
              <exon start="91663" stop="91765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG : GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA : ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC : GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGA : TGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTGCATGCCTCTAGAGGAAAAAAGGAT</gDNA_template>
            <first_frame> I  Q  P  I  N  Y  Q  K  N  A  F  L  P  F  S  H  L  F  F  H  H  R  F  L  P  L  F  L  R  Q  I  S  P  T  Q  I  L  F  L  S  F  P  V  P  N  S  S  K  T  T  P  F  S  V  F  S  *  H  S  S  F  N  G  L  G  C  H  R  *  F  S  C  *  *  F  K  E  T  K  L  K  R  S  *  N  *  A  *  I  E  S  R  R  A  *  L  G  *  L  F  C  S  *  T  T  W  R  P  Q  K  *  *  Y  S  K  R   : G  V  A  C  L  L  H  E  S  V  T  L  C  T  G  Q  *  P  S  A  C  S  M  V  R  I  S  G  G  V  T  *  I  G  S  *  R  :  I  *  E  A  *  F  S  P  Y  F  L  W  G  I  T  I  G  G  S  :  D  T  L  C  P  K  L  W  R  T  S  V  W  H  V  G  R  A  V  R  G  W  *  G  N  N  S  W  R  D  I  E  F  K  V  T  K  V  G  A  A  A  *  G  C  W  K  D  P  I  *  S  F  C  *  W  S  C  S  A  S  *  *  H  P  R  I  P  L  *  *  S  N  A  R  S  W  N  P  N  N  T  S  T  L  S  S  D  D  G  K  R  C  Y  E  G  Y  V  L  *  :  W  K  S  Q  R  *  T  W  C  N  C  L  Q  S  C  S  I  V  S  A  F  W  F  L  S  T  A  C  L  *  R  K  K  G  </first_frame>
            <second_frame>  F  N  P  S  I  I  K  K  M  L  S  S  L  S  H  T  S  S  S  T  T  A  F  F  L  S  S  S  A  K  F  L  R  P  R  F  S  S  C  P  F  Q  F  P  I  H  Q  K  R  H  R  S  L  F  S  H  S  T  A  A  S  M  D  S  A  A  T  V  D  S  V  A  D  D  L  K  K  Q  N  L  K  G  V  E  I  K  L  K  L  N  L  E  E  L  N  W  D  N  S  F  V  R  E  L  P  G  D  P  R  S  D  S  I  P  R  E  :  V  L  H  A  C  Y  T  K  V  L  P  S  V  P  V  N  N  P  Q  L  V  A  W  S  E  S  V  A  E  L  L  E  L  D  P  R  E :   F  E  R  P  D  F  P  L  I  F  S  G  A  S  P  L  V  G  A :   I  P  Y  A  Q  N  Y  G  G  H  Q  F  G  M  W  A  G  Q  L  G  D  G  R  A  I  T  L  G  E  I  L  N  S  K  S  Q  R  W  E  L  Q  L  K  G  A  G  K  T  P  Y  S  R  F  A  D  G  L  A  V  L  R  S  S  I  R  E  F  L  C  S  E  A  M  H  G  L  G  I  P  T  T  R  A  L  C  L  V  T  T  G  K  D  V  M  R  D  M  F  Y  D :   G  N  P  K  D  E  P  G  A  I  V  C  R  V  A  Q  S  F  L  R  F  G  S  Y  Q  L  H  A  S  R  G  K  K  D </second_frame>
            <third_frame>   S  T  H  Q  L  S  K  K  C  F  P  P  F  L  T  P  L  L  P  P  P  L  S  S  S  L  P  P  P  N  F  S  D  P  D  S  L  L  V  L  S  S  S  Q  F  I  K  N  D  T  V  L  C  F  L  I  A  Q  Q  L  Q  W  T  R  L  P  P  L  I  Q  L  L  M  I  *  R  N  K  T  *  K  E  L  K  L  S  L  N  *  I  S  K  S  L  I  G  I  T  L  L  F  V  N  Y  L  A  T  P  E  V  I  V  F  Q  E  R :   C  C  M  L  A  T  R  K  C  Y  P  L  Y  R  S  I  T  L  S  L  *  H  G  Q  N  Q  W  R  S  Y  L  N  W  I  L  E   : N  L  R  G  L  I  F  P  L  F  S  L  G  H  H  H  W  W  E   : R  Y  L  M  P  K  I  M  E  D  I  S  L  A  C  G  P  G  S  *  G  M  V  G  Q  *  L  L  E  R  Y  *  I  Q  S  H  K  G  G  S  C  S  L  R  V  L  E  R  P  H  I  V  V  L  L  M  V  L  Q  C  F  V  V  A  S  E  N  S  F  V  V  K  Q  C  T  V  L  E  S  Q  Q  H  E  H  F  V  *  *  R  R  E  K  M  L  *  G  I  C  F  M   : M  E  I  P  K  M  N  L  V  Q  L  S  A  E  L  L  N  R  F  C  V  L  V  L  I  N  C  M  P  L  E  E  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89051" stop="89398"/>
                    <exon start="90725" stop="90834"/>
                    <exon start="90917" stop="90973"/>
                    <exon start="91055" stop="91354"/>
                    <exon start="91663" stop="91765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNPSIIKKMLSSLSHTSSSTTAFFLSSSAKFLRPRFSSCPFQFPIHQKRHRSLFSHSTAASMDSAATVDSVADDLKKQNLKGVEIKLKLNLEELNWDNSFVRELPGDPRSDSIPREVLHACYTKVLPSVPVNNPQLVAWSESVAELLELDPREFERPDFPLIFSGASPLVGAIPYAQNYGGHQFGMWAGQLGDGRAITLGEILNSKSQRWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHGLGIPTTRALCLVTTGKDVMRDMFYDGNPKDEPGAIVCRVAQSFLRFGSYQLHASRGKKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="91813" PGL_stop="94745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91813" e_stop="91892"/>
            <exon e_start="92313" e_stop="92619"/>
            <exon e_start="92729" e_stop="93002"/>
            <exon e_start="94358" e_stop="94745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91813" e_stop="91892" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91893" i_stop="92312" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92313" e_stop="92619" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92620" i_stop="92728" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92729" e_stop="93002" e_length="274"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93003" i_stop="94357" i_length="1355"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="94358" e_stop="94745" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91813" stop="91892"/>
              <exon start="92313" stop="92619"/>
              <exon start="92729" stop="93002"/>
              <exon start="94358" stop="94745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAG : CTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG : ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG : CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAAT</gDNA_template>
            <first_frame> P  P  F  G  E  Y  D  *  E  *  K  H  I  S  *  H  R  R  G  F  N  F  K  Q  V  C  S :   L  G  S  G  S  C  *  E  D  C  V  H  D  C  Q  V  A  G  C  W  F  H  T  W  S  H  E  H  *  *  Y  E  R  V  R  T  H  Y  *  L  W  S  L  W  L  F  R  F  F  *  S  Q  L  H  T  K  Y  H  *  S  S  W  Q  K  I  L  F  C  K  S  A  R  C  R  F  M  E  Y  C  A  V  Y  L  C  S  I  Y  C  R  V  A  *  *  *  R  G  R  L  C  Y  G  K  :  I  W  *  Q  I  H  G  *  L  S  R  Y  H  D  Q  E  T  W  S  D  K  V  Q  *  K  V  D  W  *  T  T  Q  E  Y  G  L  R  *  S  *  L  H  K  F  L  S  I  S  I  K  H  Q  S  *  S  C  N  S  R  G  P  I  I  D  S  S  Q  R  C  S  L  R  Y  W  Y  G  T  Q  G  S  L  D  *  L  D  K  V  I  Y  T  R   : A  L  H  N  W  C  I  R  *  G  E  E  S  F  N  E  F  C  K  S  K  V  H  P  Q  K  L  S  M  P  E  C  H  *  C  S  R  T  R  R  F  *  G  G  S  A  V  I  E  G  Y  A  M  S  I  *  *  T  A  W  Y  G  E  I  C  T  L  A  S  S  L  G  S  S  S  G  C  M  H  A  F  L  F  L  I  R  F  P  G  V  C  L  C  F  L  V  P  H  N  I  S  T  M  *  Y  Q  S  F  T  C  I  Y  I  T  S  L  P  A  R  A  L  H  V  Y  S  K  *  K  S   </first_frame>
            <second_frame>  P  H  L  E  N  M  T  R  S  E  S  I  S  A  N  T  D  V  D  L  T  S  N  K  Y  A   : A  W  A  V  E  V  A  E  R  T  A  S  M  I  A  R  W  Q  D  V  G  F  T  H  G  V  M  N  T  D  N  M  S  V  L  G  L  T  I  D  Y  G  P  F  G  F  L  D  S  F  D  P  S  Y  T  P  N  T  T  D  L  P  G  R  R  Y  C  F  A  N  Q  P  D  V  G  L  W  N  I  A  Q  F  T  S  A  L  S  T  A  E  L  L  S  D  K  E  A  D  Y  A  M  E  R :   Y  G  N  K  F  M  D  D  Y  Q  D  I  M  T  R  K  L  G  L  T  K  Y  N  K  K  L  I  G  E  L  L  K  N  M  V  S  D  K  V  D  Y  T  N  F  F  R  S  L  S  N  I  K  A  D  P  A  I  P  E  D  Q  L  L  I  P  L  K  D  V  L  L  D  I  G  M  E  R  R  E  A  W  T  N  W  I  K  S  Y  I  Q  E  :  L  S  T  T  G  V  L  D  E  E  R  K  V  S  M  N  F  V  N  P  K  Y  I  L  R  N  Y  L  C  Q  N  A  I  D  A  A  E  Q  G  D  F  E  E  V  R  Q  L  L  K  V  M  Q  C  P  F  D  E  Q  P  G  M  E  K  Y  A  R  L  P  P  A  W  A  H  R  P  G  V  C  M  L  S  C  S  S  *  G  F  R  V  Y  A  Y  A  F  L  F  L  I  I  S  P  L  C  N  T  R  V  S  L  V  Y  I  *  L  V  S  R  H  V  R  C  T  C  I  P  N  K  N  Q  </second_frame>
            <third_frame>   P  I  W  R  I  *  L  G  V  K  A  Y  Q  L  T  Q  T  W  I  *  L  Q  T  S  M  Q  :  L  G  Q  W  K  L  L  R  G  L  R  P  *  L  P  G  G  R  M  L  V  S  H  M  E  S  *  T  L  I  I  *  A  C  *  D  S  L  L  T  M  V  P  L  A  F  *  I  L  L  I  P  V  T  H  Q  I  P  L  I  F  L  A  E  D  I  V  L  Q  I  S  Q  M  *  V  Y  G  I  L  R  S  L  P  L  L  Y  L  L  P  S  C  L  V  I  K  R  Q  I  M  L  W  K   : D  M  V  T  N  S  W  M  I  I  K  I  S  *  P  G  N  L  V  *  Q  S  T  I  K  S  *  L  V  N  Y  S  R  I  W  S  P  I  K  L  I  T  Q  I  S  F  D  L  Y  Q  T  S  K  L  I  L  Q  F  Q  R  T  N  Y  *  F  L  S  K  M  F  S  *  I  L  V  W  N  A  G  K  P  G  L  T  G  *  S  H  I  Y  K  S :   S  P  Q  L  V  Y  *  M  R  R  G  K  F  Q  *  I  L  *  I  Q  S  T  S  S  E  T  I  Y  A  R  M  P  L  M  Q  Q  N  K  A  I  L  R  R  F  G  S  Y  *  R  L  C  N  V  H  L  M  N  S  L  V  W  R  N  M  H  A  C  L  Q  L  G  L  I  V  R  V  Y  A  C  F  L  V  P  H  K  V  S  G  C  M  L  M  L  S  C  S  S  *  Y  L  H  Y  V  I  P  E  F  H  L  Y  I  Y  N  *  S  P  G  T  C  V  A  R  V  F  Q  I  K  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91814" stop="91892"/>
                    <exon start="92313" stop="92619"/>
                    <exon start="92729" stop="93002"/>
                    <exon start="94358" stop="94612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHLENMTRSESISANTDVDLTSNKYAAWAVEVAERTASMIARWQDVGFTHGVMNTDNMSVLGLTIDYGPFGFLDSFDPSYTPNTTDLPGRRYCFANQPDVGLWNIAQFTSALSTAELLSDKEADYAMERYGNKFMDDYQDIMTRKLGLTKYNKKLIGELLKNMVSDKVDYTNFFRSLSNIKADPAIPEDQLLIPLKDVLLDIGMERREAWTNWIKSYIQELSTTGVLDEERKVSMNFVNPKYILRNYLCQNAIDAAEQGDFEEVRQLLKVMQCPFDEQPGMEKYARLPPAWAHRPGVCMLSCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="98821" PGL_stop="98236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98821" e_stop="98696"/>
            <exon e_start="98619" e_stop="98444"/>
            <exon e_start="98364" e_stop="98236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.913"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.966"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="98821" e_stop="98696" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98695" i_stop="98620" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="98619" e_stop="98444" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98443" i_stop="98365" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98364" e_stop="98236" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98821" stop="98696"/>
              <exon start="98619" stop="98444"/>
              <exon start="98364" stop="98236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAATTGTAAGATCCCGAGGTTTTTTCCCAAATGCATACTGGTACTGGATTGGTGTCGGTGCACTTATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTTTCTTAACC : CACTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAACAACAAACACTGGGAAAGAAGTACCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCCATCACCTTCAATGAAGTTACATACTCTGTTGACATGCCTCAG : GAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</gDNA_template>
            <first_frame> L  Q  L  *  D  P  E  V  F  S  Q  M  H  T  G  T  G  L  V  S  V  H  L  L  V  S  Q  S  S  L  T  S  A  T  V  L  H  S  L  F  L  T  :  H  L  V  S  R  K  V  *  Y  Q  K  T  V  M  M  P  K  Q  Q  T  L  G  K  K  Y  P  L  V  R  A  R  I  R  K  R  E  W  F  F  H  L  N  R  I  P  S  P  S  M  K  L  H  T  L  L  T  C  L  R :   K  *  K  I  K  V  P  L  K  I  D  W  Y  F  *  M  V  Y  A  E  L  S  G  P  V  F  *  Q  H  *  W  E  L  V  A  L  E  K  Q  R  *  W   </first_frame>
            <second_frame>  C  N  C  K  I  P  R  F  F  P  K  C  I  L  V  L  D  W  C  R  C  T  Y  W  F  H  N  R  L  *  H  L  L  Q  Y  C  T  R  F  S  *  P :   T  W  *  A  A  R  Y  D  I  R  R  Q  *  *  C  Q  N  N  K  H  W  E  R  S  T  H  *  *  G  P  E  *  E  K  G  N  G  S  S  I  *  T  A  F  H  H  L  Q  *  S  Y  I  L  C  *  H  A  S   : G  N  E  K  S  R  C  H  *  R  *  I  G  T  S  E  W  C  M  R  S  F  Q  A  R  C  F  D  S  I  D  G  S  *  W  R  W  K  N  N  V  N  G  </second_frame>
            <third_frame>   A  I  V  R  S  R  G  F  F  P  N  A  Y  W  Y  W  I  G  V  G  A  L  I  G  F  T  I  V  F  N  I  C  Y  S  I  A  L  A  F  L  N   : P  L  G  K  P  Q  G  M  I  S  E  D  S  D  D  A  K  T  T  N  T  G  K  E  V  P  T  S  E  G  Q  N  K  K  K  G  M  V  L  P  F  E  P  H  S  I  T  F  N  E  V  T  Y  S  V  D  M  P  Q  :  E  M  K  N  Q  G  A  T  E  D  R  L  V  L  L  N  G  V  C  G  A  F  R  P  G  V  L  T  A  L  M  G  V  S  G  A  G  K  T  T  L  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98819" stop="98696"/>
                    <exon start="98619" stop="98444"/>
                    <exon start="98364" stop="98236"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIVRSRGFFPNAYWYWIGVGALIGFTIVFNICYSIALAFLNPLGKPQGMISEDSDDAKTTNTGKEVPTSEGQNKKKGMVLPFEPHSITFNEVTYSVDMPQEMKNQGATEDRLVLLNGVCGAFRPGVLTALMGVSGAGKTTLMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="104994" PGL_stop="104093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104994" e_stop="104922"/>
            <exon e_start="104851" e_stop="104597"/>
            <exon e_start="104503" e_stop="104093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.379" e_score="0.959"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.988"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="104994" e_stop="104922" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.379">
            <gDNA_intron_boundary i_start="104921" i_stop="104852" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="104851" e_stop="104597" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="104596" i_stop="104504" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="104503" e_stop="104093" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104994" stop="104922"/>
              <exon start="104851" stop="104597"/>
              <exon start="104503" stop="104093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104286" stop="104108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589762" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA : ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT : AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</gDNA_template>
            <first_frame> C  *  A  Y  S  I  L  Q  R  K  S  C  W  N  V  F  F  P  P  L  C  L  W  T   : N  F  H  *  N  T  I  C  L  C  A  S  C  Y  L  C  C  Y  H  L  C  Y  D  R  I  *  M  D  S  E  Q  I  L  L  V  L  V  Y  H  V  F  H  F  L  V  F  H  L  L  W  Y  D  E  C  C  R  F  P  K  S  K  Y  C  A  N  C  L  S  L  R  L  F  N  V  E  S  F  L  R  I  H  D  S  A  T   : *  Y  A  H  M  V  E  M  V  L  L  G  *  S  C  C  L  D  I  V  W  F  G  C  I  A  I  R  R  P  P  R  *  N  Y  *  Y  R  *  D  I  Q  T  I  L  E  A  L  L  W  V  Q  A  *  F  S  W  S  S  C  S  C  D  C  C  I  C  C  C  F  C  L  H  I  W  F  G  H  *  V  F  Q  L  P  E  K  I  E  E  L  T  C  *  R  W  N  I  H  E  M  V  I  K  L  V  Y  S  G  Y  H  L  N  K  Y  I  Y  V  L  F  V  L  Y  R  T  T  M  Q  *  N  D  F  V  S  L  N  R  L  </first_frame>
            <second_frame>  V  E  R  T  V  F  Y  R  E  R  A  A  G  M  Y  S  S  L  P  Y  A  F  G  Q  :  T  F  I  E  I  P  Y  V  F  V  Q  A  V  T  Y  A  V  I  I  Y  A  M  I  G  F  E  W  T  V  S  K  F  F  W  Y  L  F  I  M  Y  F  T  F  L  Y  F  T  F  Y  G  M  M  S  V  A  V  S  P  N  Q  N  I  A  Q  I  V  S  L  F  G  Y  S  M  W  N  L  F  S  G  F  M  I  P  R  P  :  S  M  P  I  W  W  R  W  Y  Y  W  A  D  P  V  A  W  T  L  Y  G  L  V  V  S  Q  F  G  D  L  Q  D  K  I  T  D  I  D  E  T  S  K  Q  F  L  R  R  Y  F  G  F  K  H  D  F  L  G  V  V  A  A  V  T  V  A  Y  A  V  V  F  A  F  T  F  G  L  A  I  K  F  F  N  F  Q  K  R  *  K  S  L  P  A  E  D  G  T  F  M  K  W  L  *  N  *  C  I  Q  V  T  T  *  T  S  I  Y  M  F  C  L  F  C  I  A  L  L  C  S  E  M  I  L  *  V  *  I  D  C </second_frame>
            <third_frame>   L  S  V  Q  Y  F  T  E  K  E  L  L  E  C  I  L  P  S  P  M  P  L  D  K :   L  S  L  K  Y  H  M  S  L  C  K  L  L  P  M  L  L  S  S  M  L  *  S  D  L  N  G  Q  *  A  N  S  F  G  T  C  L  S  C  I  S  L  S  C  I  S  P  S  M  V  *  *  V  L  P  F  P  Q  I  K  I  L  R  K  L  S  L  S  S  A  I  Q  C  G  I  F  S  Q  D  S  *  F  R  D  L :   V  C  P  Y  G  G  D  G  T  I  G  L  I  L  L  P  G  H  C  M  V  W  L  Y  R  N  S  E  T  S  K  I  K  L  L  I  *  M  R  H  P  N  N  S  *  G  V  T  L  G  S  S  M  I  F  L  E  *  L  Q  L  *  L  L  H  M  L  L  F  L  P  S  H  L  V  W  P  L  S  F  S  T  S  R  K  D  R  R  A  Y  L  L  K  M  E  H  S  *  N  G  Y  K  T  S  V  F  R  L  P  L  E  Q  V  Y  I  C  S  V  C  F  V  S  H  Y  Y  A  V  K  *  F  C  K  F  E  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104993" stop="104922"/>
                    <exon start="104851" stop="104597"/>
                    <exon start="104503" stop="104243"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERTVFYRERAAGMYSSLPYAFGQTFIEIPYVFVQAVTYAVIIYAMIGFEWTVSKFFWYLFIMYFTFLYFTFYGMMSVAVSPNQNIAQIVSLFGYSMWNLFSGFMIPRPSMPIWWRWYYWADPVAWTLYGLVVSQFGDLQDKITDIDETSKQFLRRYFGFKHDFLGVVAAVTVAYAVVFAFTFGLAIKFFNFQKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109933" PGL_stop="106062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109933" e_stop="109548"/>
            <exon e_start="109026" e_stop="108906"/>
            <exon e_start="108817" e_stop="108644"/>
            <exon e_start="108501" e_stop="108342"/>
            <exon e_start="108000" e_stop="107924"/>
            <exon e_start="107862" e_stop="107809"/>
            <exon e_start="107712" e_stop="107320"/>
            <exon e_start="107237" e_stop="106956"/>
            <exon e_start="106859" e_stop="106543"/>
            <exon e_start="106447" e_stop="106287"/>
            <exon e_start="106202" e_stop="106062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.911" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="0.981"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.785" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.900" e_score="0.991"/>
          <exon-intron don_prob="0.358" acc_prob="0.889" e_score="0.975"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109933" e_stop="109548" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="109026" e_stop="108906" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.992">
            <gDNA_intron_boundary i_start="108905" i_stop="108818" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108817" e_stop="108644" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108643" i_stop="108502" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="108501" e_stop="108342" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108341" i_stop="108001" i_length="341"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="108000" e_stop="107924" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107923" i_stop="107863" i_length="61"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="107862" e_stop="107809" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="107808" i_stop="107713" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="107712" e_stop="107320" e_length="393"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107319" i_stop="107238" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107237" e_stop="106956" e_length="282"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.915">
            <gDNA_intron_boundary i_start="106955" i_stop="106860" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="106859" e_stop="106543" e_length="317"/>
          </exon>
          <intron i_serial="9" don_prob="0.635" acc_prob="0.900">
            <gDNA_intron_boundary i_start="106542" i_stop="106448" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="106447" e_stop="106287" e_length="161"/>
          </exon>
          <intron i_serial="10" don_prob="0.358" acc_prob="0.889">
            <gDNA_intron_boundary i_start="106286" i_stop="106203" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="106202" e_stop="106062" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109933" stop="109548"/>
              <exon start="109026" stop="108906"/>
              <exon start="108817" stop="108644"/>
              <exon start="108501" stop="108342"/>
              <exon start="108000" stop="107924"/>
              <exon start="107862" stop="107809"/>
              <exon start="107712" stop="107320"/>
              <exon start="107237" stop="106956"/>
              <exon start="106859" stop="106543"/>
              <exon start="106447" stop="106287"/>
              <exon start="106202" stop="106062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG : AGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG : GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG : GTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG : AGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG : GCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAG : CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAA : GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG : CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAG : ATTTTTCAAACAGTTTTTGCTACTCATATCACTAAACCAGATGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGATTCGTTCTTTCACGAG : TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</gDNA_template>
            <first_frame> V  W  F  K  M  E  L  T  N  S  R  G  T  S  L  R  E  K  I  I  R  G  S  S  L  R  G  S  L  S  R  K  R  N  S  T  N  N  S  R  W  N  G  N  D  G  E  I  F  N  R  S  T  R  D  E  D  D  E  E  A  L  K  W  A  A  L  E  K  L  P  T  F  D  R  L  R  K  G  L  L  F  G  S  Q  G  A  S  A  E  I  D  I  H  D  I  G  F  Q  E  R  N  K  L  L  E  R  L  V  K  V  A  D  E  D  N  E  K  L  L  L  K  L  K  Q  R  I  D  R :   V  G  I  D  L  P  E  I  E  V  R  Y  E  H  L  T  I  E  A  D  A  Y  V  G  S  R  A  L  P  T  F  I  N  F  I  S  N  F  F  E  :  D  I  L  N  S  V  H  I  L  P  S  R  K  R  K  L  T  I  L  N  D  V  S  G  I  I  K  P  R  R  L  T  L  L  L  G  P  P  S  S  G  K  T  T  L  L  L  A  L  A  G  K  L  D  S  A  L  K  :  V  T  G  K  V  T  Y  N  G  H  E  M  N  E  F  V  P  Q  R  T  A  A  Y  I  S  Q  Y  D  L  H  I  G  E  M  T  V  R  E  T  L  E  F  S  A  R  C  Q  G  V  G  S  S  Y   : E  L  L  V  E  L  S  R  R  E  K  A  A  K  I  K  P  D  P  D  I  D  I  F  M  K  :  A  L  A  T  E  G  Q  E  A  V  F  V  T  D  Y  V  L  K  :  L  L  G  L  D  I  C  A  D  T  M  V  G  D  E  M  I  R  G  I  S  G  G  Q  K  K  R  V  T  T  G  E  M  L  V  G  P  S  K  A  L  F  M  D  E  I  S  T  G  L  D  S  S  T  T  Y  S  I  V  N  S  L  R  Q  S  V  Q  I  L  H  G  T  A  V  I  S  L  L  Q  P  A  P  E  T  Y  N  L  F  D  D  I  I  L  L  S  D  E  K  I  V  Y  Q  G  P  R  E  D  V  L  G  F  F  E  S  M  G  F  K  C  P  D  R  K  G  V  A  D  F  L  Q  E  :  V  T  S  K  K  D  Q  Q  Q  Y  W  V  R  R  D  E  T  Y  R  F  I  T  S  K  E  F  A  E  A  H  Q  S  F  H  V  G  R  K  L  A  D  K  L  A  A  S  Y  D  K  S  K  S  H  P  A  A  L  S  T  Q  K  Y  G  I  G  K  K  Q  L  L  K  V  C  T  E  R  E  L  L  L  M  K  R  N  S  F  V  Y  I  F  K  F  I  Q  :  L  T  I  V  A  L  I  S  M  T  L  F  F  R  T  K  M  P  R  D  T  I  E  D  G  V  K  Y  V  G  A  L  F  L  V  V  T  Q  I  M  F  N  G  M  A  E  I  A  L  T  I  Y  K  L  P  V  F  Y  K  Q  R  D  L  L  F  Y  P  S  W  A  Y  A  V  P  T  W  I  L  K  M  P  I  T  F  A  E  V  G  L  W  V  F  L  T  Y  Y  V  I  G  F  D  P  S  A  A  R :   F  F  K  Q  F  L  L  L  I  S  L  N  Q  M  A  S  A  L  F  R  F  I  G  A  A  G  R  T  M  G  V  A  N  T  F  G  T  F  V  L  L  L  Q  F  A  L  G  G  F  V  L  S  R   : V  D  V  K  K  W  W  L  W  G  Y  W  S  S  P  M  M  Y  A  M  N  S  I  L  V  N  E  F  D  G  K  K  W  K  Q  I  A  P  N  G  T  D  S  L  G  V  T  </first_frame>
            <second_frame>  F  G  S  K  W  S  *  L  I  Q  E  V  L  V  *  E  K  K  *  S  G  E  V  V  *  E  G  A  *  V  E  R  G  I  V  L  I  T  P  G  G  M  A  M  M  G  R  F  L  I  V  Q  R  E  T  K  M  M  K  R  L  L  N  G  Q  L  L  K  S  F  Q  R  L  I  V  *  E  K  V  S  C  L  D  H  K  V  H  L  L  K  L  I  Y  M  I  L  V  F  K  K  E  T  S  C  L  K  G  L  S  K  L  Q  M  R  I  M  R  S  S  C  *  N  S  S  K  E  L  T   : E  L  G  *  I  C  Q  K  *  K  *  D  M  S  I  *  L  L  R  Q  M  H  M  *  E  V  E  L  C  L  H  L  S  T  L  S  L  I  F  L  R :   I  Y  *  T  L  S  I  S  Y  R  V  E  R  G  N  *  L  F  L  M  M  *  V  V  S  L  S  L  A  D  *  L  C  F  *  D  L  Q  V  P  G  K  L  H  Y  Y  *  L  W  P  E  S  S  T  L  P  L  R :   L  L  E  K  *  R  I  M  D  M  K  *  M  S  L  C  R  K  E  Q  R  L  I  L  A  S  M  I  Y  I  L  E  K  *  L  *  E  K  P  W  N  S  P  P  D  A  R  E  L  D  R  V  M  :  S  C  W  L  N  C  Q  E  E  R  K  Q  L  K  S  S  Q  I  L  I  L  I  F  S  *  R :   H  *  Q  Q  R  D  K  K  Q  F  L  L  Q  I  M  F  *  S :   F  W  G  W  I  F  V  Q  I  L  W  W  E  M  K  *  L  G  V  F  Q  E  D  K  R  S  V  *  Q  P  V  K  C  S  L  D  R  P  R  H  F  S  W  M  K  S  Q  L  D  W  I  V  L  L  L  T  Q  L  *  T  H  *  D  N  L  C  K  S  C  T  E  L  L  *  Y  L  S  C  S  Q  H  P  R  R  T  T  C  S  T  T  L  F  C  Y  Q  M  R  K  L  S  I  R  D  L  E  R  M  S  L  A  S  S  S  P  W  G  S  N  V  Q  I  E  K  A  W  P  T  S  C  K  K :   *  L  Q  R  K  I  N  S  N  I  G  *  G  G  M  K  L  T  G  L  S  L  Q  K  N  L  L  R  H  I  N  R  S  M  L  G  G  N  S  R  I  S  L  Q  L  H  M  T  R  A  K  A  I  L  L  L  C  Q  L  K  S  M  V  *  G  R  N  N  S  *  R  S  A  L  N  E  N  S  Y  *  *  R  G  T  H  L  F  T  S  S  S  S  F  S :   L  Q  L  W  H  S  Y  Q  *  L  S  F  S  V  L  R  C  R  V  I  Q  L  K  M  E  *  N  M  L  V  P  S  F  W  L  S  L  R  L  C  L  T  E  W  L  R  S  P  *  Q  F  T  N  F  L  S  S  T  S  K  G  T  F  S  F  T  L  H  G  L  M  Q  C  P  H  G  Y  S  K  C  L  *  H  L  L  K  L  D  F  G  C  S  S  L  T  M  S  *  D  L  I  R  A  L  Q   : D  F  S  N  S  F  C  Y  S  Y  H  *  T  R  W  H  Q  H  C  F  A  S  L  G  Q  L  E  G  P  W  E  L  L  I  H  L  E  H  L  F  C  F  C  S  L  H  W  V  D  S  F  F  H  E  :  L  M  *  R  N  G  G  Y  G  V  T  G  H  H  R  *  C  M  L  *  I  Q  F  L  *  M  N  L  M  E  K  S  G  N  K  L  H  Q  M  E  L  I  H  L  E  L  Q </second_frame>
            <third_frame>   L  V  Q  N  G  A  N  *  F  K  R  Y  *  F  K  R  K  N  N  Q  G  K  *  F  E  R  E  L  K  *  K  E  E  *  Y  *  *  L  Q  V  E  W  Q  *  W  G  D  F  *  S  F  N  E  R  R  R  *  *  R  G  S  *  M  G  S  S  *  K  A  S  N  V  *  S  F  E  K  R  S  L  V  W  I  T  R  C  I  C  *  N  *  Y  T  *  Y  W  F  S  R  K  K  Q  V  A  *  K  A  C  Q  S  C  R  *  G  *  *  E  A  P  V  E  T  Q  A  K  N  *  Q  :  S  W  D  R  F  A  R  N  R  S  K  I  *  A  F  N  Y  *  G  R  C  I  C  R  K  *  S  F  A  Y  I  Y  Q  L  Y  L  *  F  F  *   : G  Y  I  E  L  C  P  Y  P  T  E  S  K  E  E  T  N  Y  S  *  *  C  E  W  Y  H  *  A  S  Q  I  D  F  A  F  R  T  S  K  F  R  E  N  Y  I  I  I  S  F  G  R  K  A  R  L  C  P  *   : G  Y  W  K  S  D  V  *  W  T  *  N  E  *  V  C  A  A  K  N  S  G  L  Y  *  P  V  *  F  T  Y  W  R  N  D  C  E  R  N  L  G  I  L  R  Q  M  P  G  S  W  I  E  L  * :   A  V  G  *  T  V  K  K  R  E  S  S  *  N  Q  A  R  S  *  Y  *  Y  F  H  E   : G  I  S  N  R  G  T  R  S  S  F  C  Y  R  L  C  S  E   : A  F  G  A  G  Y  L  C  R  Y  Y  G  G  R  *  N  D  *  G  Y  F  R  R  T  K  E  A  C  D  N  R  *  N  A  R  W  T  V  Q  G  T  F  H  G  *  N  L  N  W  I  G  *  F  Y  Y  L  L  N  C  E  L  T  K  T  I  C  A  N  L  A  R  N  C  C  D  I  S  L  A  A  S  T  R  D  V  Q  L  V  R  R  H  Y  S  V  I  R  *  E  N  C  L  S  G  T  S  R  G  C  P  W  L  L  R  V  H  G  V  Q  M  S  R  *  K  R  R  G  R  L  L  A  R   : S  D  F  K  E  R  S  T  A  I  L  G  E  E  G  *  N  L  P  V  Y  H  F  K  R  I  C  *  G  T  S  I  V  P  C  W  E  E  T  R  G  *  A  C  S  F  I  *  Q  E  Q  K  P  S  C  C  F  V  N  S  K  V  W  Y  R  E  E  T  T  L  K  G  L  H  *  T  R  T  L  T  N  E  E  E  L  I  C  L  H  L  Q  V  H  S   : A  Y  N  C  G  T  H  I  N  D  S  L  F  P  Y  *  D  A  A  *  Y  N  *  R  W  S  K  I  C  W  C  P  L  F  G  C  H  S  D  Y  V  *  R  N  G  *  D  R  P  D  N  L  Q  T  S  C  L  L  Q  A  K  G  P  S  L  L  P  F  M  G  L  C  S  A  H  M  D  T  Q  N  A  Y  N  I  C  *  S  W  T  L  G  V  P  H  L  L  C  H  R  I  *  S  E  R  C  K  :  I  F  Q  T  V  F  A  T  H  I  T  K  P  D  G  I  S  I  V  S  L  H  W  G  S  W  K  D  H  G  S  C  *  Y  I  W  N  I  C  S  A  F  A  V  C  I  G  W  I  R  S  F  T  S :   *  C  E  E  M  V  V  M  G  L  L  V  I  T  D  D  V  C  Y  E  F  N  S  C  E  *  I  *  W  K  K  V  E  T  N  C  T  K  W  N  *  F  T  W  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109933" stop="109548"/>
                    <exon start="109026" stop="108906"/>
                    <exon start="108817" stop="108644"/>
                    <exon start="108501" stop="108342"/>
                    <exon start="108000" stop="107924"/>
                    <exon start="107862" stop="107809"/>
                    <exon start="107712" stop="107320"/>
                    <exon start="107237" stop="106956"/>
                    <exon start="106859" stop="106543"/>
                    <exon start="106447" stop="106287"/>
                    <exon start="106202" stop="106063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2265</number_coding_nucleotides>
                  <number_encoded_amino_acids>755</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFKMELTNSRGTSLREKIIRGSSLRGSLSRKRNSTNNSRWNGNDGEIFNRSTRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGASAEIDIHDIGFQERNKLLERLVKVADEDNEKLLLKLKQRIDRVGIDLPEIEVRYEHLTIEADAYVGSRALPTFINFISNFFEDILNSVHILPSRKRKLTILNDVSGIIKPRRLTLLLGPPSSGKTTLLLALAGKLDSALKVTGKVTYNGHEMNEFVPQRTAAYISQYDLHIGEMTVRETLEFSARCQGVGSSYELLVELSRREKAAKIKPDPDIDIFMKALATEGQEAVFVTDYVLKLLGLDICADTMVGDEMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILHGTAVISLLQPAPETYNLFDDIILLSDEKIVYQGPREDVLGFFESMGFKCPDRKGVADFLQEVTSKKDQQQYWVRRDETYRFITSKEFAEAHQSFHVGRKLADKLAASYDKSKSHPAALSTQKYGIGKKQLLKVCTERELLLMKRNSFVYIFKFIQLTIVALISMTLFFRTKMPRDTIEDGVKYVGALFLVVTQIMFNGMAEIALTIYKLPVFYKQRDLLFYPSWAYAVPTWILKMPITFAEVGLWVFLTYYVIGFDPSAARFFKQFLLLISLNQMASALFRFIGAAGRTMGVANTFGTFVLLLQFALGGFVLSRVDVKKWWLWGYWSSPMMYAMNSILVNEFDGKKWKQIAPNGTDSLGVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="115199" PGL_stop="114543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115199" e_stop="114543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="115199" e_stop="114543" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115199" stop="114543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGT</gDNA_template>
            <first_frame> P  C  F  Y  P  L  I  V  Y  C  F  A  L  T  L  N  G  Q  T  S  R  *  L  V  V  V  E  F  *  E  L  *  *  R  T  S  L  G  I  I  T  I  N  H  K  V  F  D  A  S  L  Y  *  M  S  L  L  N  P  R  R  Y  V  Y  M  I  E  Y  P  Y  R  K  C  H  T  H  A  L  S  *  K  N  I  H  D  F  N  N  *  T  *  F  S  T  W  N  F  H  L  H  D  S  R  L  *  *  *  *  S  S  V  S  Q  N  F  V  I  K  V  *  F  C  T  P  N  D  F  L  S  T  S  K  A  I  I  C  V  L  H  Q  L  Y  Q  T  F  C  Q  Y  L  R  T  V  Y  K  I  F  H  N  L  I  T  V  V  M  L  V  N  S  S  D  N  V  *  M  H  I  F  *  V  F  T  L  K  M  F  F  F  F  I  K  L  G  R  T  L  T  D  N  M  V  V  G  V  S  K  G  F  E  K  K  L  Q  L  V  G  V  G  Y  R </first_frame>
            <second_frame>  L  V  F  I  H  L  *  F  I  V  L  P  L  L  *  M  V  K  L  A  V  N  *  S  L  *  S  F  R  S  F  N  K  E  L  V  *  V  *  *  P  *  I  I  R  F  L  M  L  V  Y  T  R  *  A  C  *  I  L  G  D  T  F  I  *  L  N  I  L  T  E  S  V  I  H  T  P  *  A  R  R  I  S  M  I  S  T  I  R  R  D  F  Q  L  G  I  F  I  Y  T  T  L  V  S  D  D  D  D  H  Q  F  H  R  I  L  *  *  R  Y  D  S  A  P  Q  M  I  S  S  Q  L  Q  K  P  *  Y  V  S  Y  T  N  S  I  K  H  S  A  N  T  Y  G  L  Y  I  K  F  F  I  I  L  S  L  L  L  C  W  S  I  L  V  T  M  Y  R  C  T  Y  F  E  C  L  L  *  R  C  S  F  S  S  S  N  S  A  G  L  *  L  I  T  W  *  S  A  F  P  K  D  S  R  R  N  F  N  W  *  G  L  D  I   </second_frame>
            <third_frame>   L  F  L  S  T  Y  S  L  L  F  C  P  Y  F  K  W  S  N  *  P  L  T  S  R  C  R  V  L  G  A  L  I  K  N  *  F  R  Y  N  N  H  K  S  *  G  F  *  C  *  F  I  L  D  E  L  V  E  S  *  E  I  R  L  Y  D  *  I  S  L  Q  K  V  S  Y  T  R  L  K  L  E  E  Y  P  *  F  Q  Q  L  D  V  I  F  N  L  E  F  S  F  T  R  L  S  S  L  M  M  M  I  I  S  F  T  E  F  C  D  K  G  M  I  L  H  P  K  *  F  P  L  N  F  K  S  H  N  M  C  L  T  P  T  L  S  N  I  L  P  I  P  T  D  C  I  *  N  F  S  *  S  Y  H  C  C  Y  V  G  Q  F  *  *  Q  C  I  D  A  H  I  L  S  V  Y  S  E  D  V  L  F  L  H  Q  T  R  Q  D  S  N  *  *  H  G  S  R  R  F  Q  R  I  R  E  E  T  S  I  G  R  G  W  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 76 chains have been computed
$ 
$ memory statistics:
$ 46856 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2231 bytes was the average size of a spliced alignment
$ 26768 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1574 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 87 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:26:03
-->
